Supporting data for “Computational analysis of shotgun metagenomic data from human gut microbiota”.

This dataset contains raw source data and scripts written to generate figures for the thesis entitled "Supporting data for “Computational analysis of shotgun metagenomic data from human gut microbiota". This includes raw species abundance tables used for statistical analysis and methods evaluation, clinical patient records and blood/stool biochemical measurements. Files are separated by their chapter contribution. Chapter 2 files are related to methods comparison and evaluation in gut metagenomics species abundance estimation. Chapter 3 primarily contains raw patient clinical data and their gut microbial compositions for statistical analysis. Chapter 4 contains files related to the scripts utilized to investigate the phenomenon of read coverage bias in human gut metagenomic data.