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Reason: The data is provided by our collaborators, and is maintained by collaborators. Chapter 3 and 4 includes clinical information that are part of a larger study.

Supporting data for "Coronary artery disease biomarker discovery using computational omics approaches"

dataset
posted on 2024-05-21, 01:15 authored by Chun Hin LeeChun Hin Lee
  • Metabolomic and lipidomic analysis in CAD using 33 mice. Plaque tissue were collected using the Multi-ABLE method and was analysed and processed using the multi-ABLE pipeline. Uploaded data includes the input data for multi-ABLE, processed data and the code to processed the data. Full data and methodology is published at https://doi.org/10.1016/j.isci.2023.106881.
  • Proteomic analysis in CAD using 1004 samples. Plasma proteins were collected under the BioHEART study and is analysed using LC-MS. DIA-NN is used to process the LC-MS raw data. Uploaded data includes processed data and the code to generate the figures in the chapter.
  • CITE-seq data in CAD using 51 samples. PBMC of 51 samples were collected under the BioHEART study and is analysed using CITE-seq. scClassify and Seurat is used to process and annotate the raw data. Uploaded data includes processed data and the code to generate those figures in the chapter which does not requires raw data.


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