Supporting data for "Pylogenomics and comparative transcriptomics of selected clades in the early divergent angiosperm family Annonaceae: unlocking patterns of flora evolution, pollination ecology, and evolutionary diversification"

Filename: Chapter 2

The supporting data for the chapter2 of the thesis, including two folders: one folder ("alignment_file_of_protein_coding_genes")contains 70 aligned protein coding genes .txt documents; the other folder ("complete_chloroplast_genome_fasta_files")contains 62 species complete chloroplast genome .txt documents.

Filename: Chapter 3

The supporting data for the chapter3 of the thesis, including two folders: one folder ("Unigenes") contains three .txt files of assembled unigenes of three species; the other folder ("DEGs") contains three .csv files of the different expression genes parameters of limestone samples to non-limestone samples within each species.

Filename: Chapter 4

The supporting data for the chapter4 of the thesis, including two .csv and one .txt documents:"Biogeography_area_region.csv" is biogeographical regions information for each species; "niche_data.csv" contains GPS locations and 19 climatic variables for each individuals;"final_dated_tree_with_95HPD.txt" is the dated phylogenetic tree with 95% highest probability density (HPD) intervals value.

Filename: Chapter 5

The supporting data for the chapter5 of the thesis, including one .csv, and one .txt documents: "niche_data.csv" includes GPS locations and 19 climatic variables for each individuals; "final_dated_tree_with_95HPD.txt" is the dated phylogenetic tree with 95% highest probability density (HPD) intervals value.