<p dir="ltr"><i>ISL1</i> was selected for reverse genetic study. An <i>ISL1-EGFP</i> reporter hEPSC line was derived and their differentiation in hTSCM revealed the inter-cellular heterogeneity in ISL1 protein levels, which were undetectable in primary hTSC-like colonies. These dynamics appeared as altered by BMP4 or LDN193189 supplement. Also, stable <i>ISL1</i><sup>+/+</sup>, <i>ISL1</i><sup>+/-</sup>, and <i>ISL1</i><sup>-/-</sup> hEPSC lines were derived but <i>ISL1</i>-KO did not impact their pluripotency or extra-embryonic differentiation. The function role of <i>ISL1</i> in hEPSCs awaits further investigation.</p>