Carbon fixation in photosynthetic organisms - Reference pathway
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Reference pathway
Reference pathway (KO)
Reference pathway (EC)
Reference pathway (Reaction)
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Arabidopsis thaliana (thale cress)
Arabidopsis lyrata (lyrate rockcress)
Capsella rubella
Camelina sativa (false flax)
Eutrema salsugineum
Brassica rapa (field mustard)
Brassica napus (rape)
Brassica oleracea (wild cabbage)
Tarenaya hassleriana (spider flower)
Carica papaya (papaya)
Citrus sinensis (Valencia orange)
Citrus clementina (mandarin orange)
Theobroma cacao (cacao)
Gossypium raimondii
Gossypium hirsutum (upland cotton)
Gossypium arboreum
Durio zibethinus (durian)
Eucalyptus grandis (rose gum)
Glycine max (soybean)
Phaseolus vulgaris (common bean)
Vigna radiata (mung bean)
Vigna angularis (adzuki bean)
Cajanus cajan (pigeon pea)
Medicago truncatula (barrel medic)
Cicer arietinum (chickpea)
Lotus japonicus
Arachis duranensis
Arachis ipaensis
Lupinus angustifolius (narrow-leaved blue lupine)
Fragaria vesca (woodland strawberry)
Prunus persica (peach)
Prunus mume (Japanese apricot)
Prunus avium (sweet cherry)
Malus domestica (apple)
Pyrus x bretschneideri (Chinese white pear)
Ziziphus jujuba (Chinese jujube)
Cucumis sativus (cucumber)
Cucumis melo (muskmelon)
Momordica charantia (bitter melon)
Cucurbita maxima (winter squash)
Cucurbita moschata (crookneck pumpkin)
Cucurbita pepo subsp. pepo (vegetable marrow)
Ricinus communis (castor bean)
Jatropha curcas
Hevea brasiliensis (rubber tree)
Manihot esculenta (cassava)
Populus trichocarpa (black cottonwood)
Juglans regia (English walnut)
Quercus suber (cork oak)
Vitis vinifera (wine grape)
Solanum lycopersicum (tomato)
Solanum pennellii
Solanum tuberosum (potato)
Capsicum annuum
Nicotiana tabacum (common tobacco)
Nicotiana sylvestris
Nicotiana tomentosiformis
Nicotiana attenuata
Ipomoea nil (Japanese morning glory)
Sesamum indicum (sesame)
Olea europaea var. sylvestris (wild olive)
Helianthus annuus (common sunflower)
Lactuca sativa (garden lettuce)
Cynara cardunculus var. scolymus (artichoke)
Daucus carota (carrot)
Beta vulgaris (sugar beet)
Spinacia oleracea (spinach)
Chenopodium quinoa (quinoa)
Nelumbo nucifera (sacred lotus)
Papaver somniferum (opium poppy)
Oryza sativa japonica (Japanese rice) (RefSeq)
Oryza sativa japonica (Japanese rice) (RAPDB)
Oryza brachyantha (malo sina)
Brachypodium distachyon
Aegilops tauschii (wheat D)
Sorghum bicolor (sorghum)
Zea mays (maize)
Setaria italica (foxtail millet)
Phoenix dactylifera (date palm)
Elaeis guineensis (African oil palm)
Musa acuminata (wild Malaysian banana)
Dendrobium catenatum
Phalaenopsis equestris
Asparagus officinalis (garden asparagus)
Amborella trichopoda
Selaginella moellendorffii
Physcomitrella patens subsp. patens
Chlamydomonas reinhardtii
Volvox carteri f. nagariensis
Monoraphidium neglectum
Ostreococcus lucimarinus
Ostreococcus tauri
Bathycoccus prasinos
Micromonas commoda
Micromonas pusilla
Coccomyxa subellipsoidea
Chlorella variabilis
Auxenochlorella protothecoides
Cyanidioschyzon merolae
Galdieria sulphuraria
Chondrus crispus (carragheen)
Phaeodactylum tricornutum
Fragilariopsis cylindrus
Thalassiosira pseudonana
Thiomicrospira cyclica
Thiomicrospira aerophila
Thiomicrospira sp. S5
Methylophaga nitratireducenticrescens
Methylophaga frappieri
Nitrosococcus oceani
Nitrosococcus halophilus
Nitrosococcus watsonii
Nitrosococcus wardiae
Allochromatium vinosum
Thiocystis violascens
Thioflavicoccus mobilis
Alkalilimnicola ehrlichii
Halorhodospira halophila
Halorhodospira halochloris
Thioalkalivibrio sulfidiphilus
Thioalkalivibrio sp. K90mix
Thioalkalivibrio nitratireducens
Thioalkalivibrio paradoxus
Thioalkalivibrio versutus
Halothiobacillus neapolitanus
Halothiobacillus sp. LS2
Cupriavidus pinatubonensis JMP134
Cupriavidus necator H16
Cupriavidus necator N-1
Cupriavidus necator NH9
Cupriavidus metallidurans
Cupriavidus taiwanensis
Cupriavidus basilensis
Cupriavidus gilardii
Cupriavidus sp. USMAHM13
Cupriavidus sp. USMAA1020
Cupriavidus sp. USMAA2-4
Cupriavidus pauculus
Burkholderia mallei ATCC 23344
Burkholderia mallei SAVP1
Burkholderia mallei NCTC 10229
Burkholderia mallei NCTC 10247
Burkholderia mallei 23344
Burkholderia mallei 6
Burkholderia mallei BMQ
Burkholderia mallei 2000031063
Burkholderia mallei FMH 23344
Burkholderia mallei NCTC 10247
Burkholderia mallei 2002734299
Burkholderia pseudomallei K96243
Burkholderia pseudomallei 1710b
Burkholderia pseudomallei 1106a
Burkholderia pseudomallei 668
Burkholderia pseudomallei MSHR346
Burkholderia pseudomallei MSHR305
Burkholderia pseudomallei MSHR511
Burkholderia pseudomallei MSHR146
Burkholderia pseudomallei MSHR520
Burkholderia pseudomallei 1026b
Burkholderia pseudomallei BPC006
Burkholderia pseudomallei NCTC 13179
Burkholderia pseudomallei HBPUB10134a
Burkholderia pseudomallei NAU35A-3
Burkholderia pseudomallei A79A
Burkholderia pseudomallei TSV202
Burkholderia thailandensis E264
Burkholderia thailandensis 2002721723
Burkholderia thailandensis E444
Burkholderia thailandensis H0587
Burkholderia thailandensis MSMB121
Burkholderia thailandensis MSMB59
Burkholderia thailandensis E254
Burkholderia thailandensis USAMRU Malaysia #20
Burkholderia thailandensis 2003015869
Burkholderia thailandensis 2002721643
Burkholderia oklahomensis E0147
Burkholderia oklahomensis C6786
Burkholderia vietnamiensis G4
Burkholderia vietnamiensis LMG 10929
Burkholderia lata
Burkholderia cenocepacia AU1054
Burkholderia cenocepacia HI2424
Burkholderia cenocepacia MC0-3
Burkholderia cenocepacia J2315
Burkholderia cenocepacia DDS 22E-1
Burkholderia cenocepacia DWS 37E-2
Burkholderia cenocepacia H111
Burkholderia ambifaria AMMD
Burkholderia ambifaria MC40-6
Burkholderia multivorans ATCC 17616 (JGI)
Burkholderia multivorans ATCC 17616 (Tohoku)
Burkholderia multivorans DDS 15A-1
Burkholderia multivorans ATCC BAA-247
Burkholderia cepacia GG4
Burkholderia cepacia DDS 7H-2
Burkholderia cepacia ATCC 25416
Burkholderia dolosa
Burkholderia pyrrocinia
Burkholderia contaminans
Burkholderia ubonensis
Burkholderia diffusa
Burkholderia latens
Burkholderia territorii
Burkholderia seminalis
Burkholderia pseudomultivorans
Burkholderia metallica
Burkholderia stagnalis
Burkholderia stabilis
Burkholderia glumae BGR1
Burkholderia glumae LMG 2196 = ATCC 33617
Burkholderia sp. CCGE1001
Burkholderia sp. CCGE1003
Burkholderia gladioli BSR3
Burkholderia gladioli ATCC 10248
Burkholderia sp. YI23
Burkholderia sp. KJ006
Burkholderia insecticola
Burkholderia sp. RPE67
Burkholderia sp. 2002721687
Burkholderia sp. HB1
Burkholderia plantarii PG1
Burkholderia plantarii ATCC 43733
Burkholderia sp. Bp5365
Burkholderia sp. OLGA172
Burkholderia sp. PAMC 26561
Burkholderia sp. PAMC 28687
Advenella kashmirensis
Advenella mimigardefordensis
Variovorax paradoxus S110
Variovorax paradoxus EPS
Variovorax paradoxus B4
Variovorax sp. PAMC 28711
Variovorax boronicumulans
Variovorax sp. PMC12
Methylibium petroleiphilum
Methylibium sp. Pch-M
Thiomonas intermedia
Thiomonas arsenitoxydans
Rubrivivax gelatinosus
Rubrivivax benzoatilyticus
Nitrosomonas europaea
Nitrosomonas eutropha
Nitrosomonas sp. AL212
Nitrosomonas sp. Is79A3
Nitrosomonas communis
Nitrosomonas ureae
Thiobacillus denitrificans
Sideroxydans lithotrophicus
Azoarcus sp. BH72
Azoarcus sp. KH32C
Azoarcus sp. CIB
Azoarcus olearius
Azoarcus sp. SY39
Azoarcus communis
Azoarcus sp. DN11
Mesorhizobium japonicum MAFF 303099
Mesorhizobium loti NZP2037
Mesorhizobium ciceri (biovar Biserrulae)
Mesorhizobium opportunistum
Mesorhizobium australicum
Mesorhizobium amorphae
Mesorhizobium sp. B7
Mesorhizobium sp. WSM1497
Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2
Mesorhizobium sp. Pch-S
Sinorhizobium meliloti 1021
Sinorhizobium meliloti AK83
Sinorhizobium meliloti BL225C
Sinorhizobium meliloti SM11
Sinorhizobium meliloti Rm41
Sinorhizobium meliloti GR4
Sinorhizobium meliloti 2011
Sinorhizobium meliloti RMO17
Sinorhizobium medicae
Sinorhizobium fredii NGR234
Sinorhizobium fredii HH103
Sinorhizobium fredii USDA 257
Sinorhizobium sp. RAC02
Sinorhizobium americanum
Sinorhizobium sp. CCBAU 05631
Bradyrhizobium diazoefficiens USDA 110
Bradyrhizobium japonicum USDA 6
Bradyrhizobium japonicum E109
Bradyrhizobium sp. ORS 278
Bradyrhizobium sp. BTAi1
Bradyrhizobium sp. S23321
Bradyrhizobium oligotrophicum
Bradyrhizobium sp. CCGE-LA001
Bradyrhizobium sp. BF49
Bradyrhizobium icense
Bradyrhizobium sp. ORS 285
Bradyrhizobium sp. SK17
Bradyrhizobium ottawaense
Bradyrhizobium sp. 2 39S1MB
Bradyrhizobium guangdongense
Rhodopseudomonas palustris CGA009
Rhodopseudomonas palustris HaA2
Rhodopseudomonas palustris BisB18
Rhodopseudomonas palustris BisB5
Rhodopseudomonas palustris BisA53
Rhodopseudomonas palustris TIE-1
Rhodopseudomonas palustris DX-1
Nitrobacter winogradskyi
Nitrobacter hamburgensis
Oligotropha carboxidovorans OM5 (Mississippi)
Oligotropha carboxidovorans OM5 (Goettingen)
Oligotropha carboxidovorans OM4
Xanthobacter autotrophicus
Starkeya novella
Methylobacterium radiotolerans
Methylobacterium sp. 4-46
Methylobacterium nodulans
Methylobacterium oryzae
Methylobacterium sp. AMS5
Methylobacterium aquaticum
Methylobacterium phyllosphaerae
Methylobacterium currus
Methylobacterium sp. DM1
Methylobacterium sp. XJLW
Methylobacterium sp. 17SD2-17
Methylobacterium sp. 17Sr1-43
Methylocella silvestris
Methylocella tundrae
Hyphomicrobium denitrificans ATCC 51888
Hyphomicrobium denitrificans 1NES1
Hyphomicrobium sp. MC1
Hyphomicrobium nitrativorans
Rhodomicrobium vannielii
Methylocystis sp. SC2
Methylocystis bryophila
Methylocystis rosea
Rhodobacter sphaeroides 2.4.1
Rhodobacter sphaeroides ATCC 17029
Rhodobacter sphaeroides ATCC 17025
Rhodobacter sphaeroides KD131
Rhodobacter capsulatus
Rhodobacter sp. LPB0142
Rhodobacter blasticus
Paracoccus denitrificans
Paracoccus aminophilus
Paracoccus yeei
Paracoccus contaminans
Paracoccus zhejiangensis
Paracoccus sp. BM15
Paracoccus sp. CBA4604
Paracoccus aminovorans
Paracoccus mutanolyticus
Paracoccus sp. SC2-6
Acidiphilium cryptum
Acidiphilium multivorum
Rhodospirillum rubrum ATCC 11170
Rhodospirillum rubrum F11
Rhodospirillum centenum
Magnetospirillum magneticum
Magnetospirillum gryphiswaldense MSR-1 v2
Magnetospirillum gryphiswaldense MSR-1
Magnetospirillum sp. XM-1
Magnetospirillum sp. ME-1
Azospirillum sp. B510
Azospirillum lipoferum
Azospirillum brasilense Sp245
Azospirillum brasilense Az39
Azospirillum brasilense Sp7
Azospirillum thiophilum
Azospirillum humicireducens
Azospirillum sp. TSH58
Azospirillum sp. M2T2B2
Azospirillum sp. CFH 70021
Polymorphum gilvum
Acidithiobacillus ferrooxidans ATCC 53993
Acidithiobacillus ferrooxidans ATCC 23270
Acidithiobacillus caldus SM-1
Acidithiobacillus caldus ATCC 51756
Acidithiobacillus ferrivorans
Acidithiobacillus ferridurans
Kyrpidia tusciae
Kyrpidia spormannii
Sulfobacillus acidophilus TPY
Sulfobacillus acidophilus DSM 10332
Nocardia farcinica IFM 10152
Nocardia farcinica NCTC11134
Nocardia cyriacigeorgica
Nocardia brasiliensis
Nocardia nova
Nocardia sp. Y48
Nocardia seriolae
Nocardia terpenica
Thermomonospora curvata
Pseudonocardia dioxanivorans
Pseudonocardia sp. AL041005-10
Pseudonocardia sp. EC080625-04
Pseudonocardia sp. HH130629-09
Pseudonocardia sp. EC080610-09
Pseudonocardia sp EC080619-01
Pseudonocardia sp. HH130630-07
Acidimicrobium ferrooxidans
Synechocystis sp. PCC 6803
Synechocystis sp. PCC 6803
Synechocystis sp. PCC 6803 GT-S
Synechocystis sp. PCC 6803 GT-I
Synechocystis sp. PCC 6803 PCC-N
Synechocystis sp. PCC 6803 PCC-P
Synechocystis sp. PCC 6714
Synechocystis sp. IPPAS B-1465
Synechococcus sp. WH8102
Synechococcus elongatus PCC6301
Synechococcus elongatus PCC7942
Synechococcus sp. CC9605
Synechococcus sp. CC9902
Synechococcus sp. CC9311
Synechococcus sp. RCC307
Synechococcus sp. WH7803
Synechococcus sp. PCC7002
Synechococcus sp. JA-3-3Ab
Synechococcus sp. JA-2-3B'a(2-13)
Synechococcus sp. PCC 6312
Synechococcus sp. PCC 7502
Synechococcus sp. KORDI-100
Synechococcus sp. KORDI-49
Synechococcus sp. KORDI-52
Synechococcus sp. UTEX 2973
Synechococcus sp. WH 8109
Synechococcus sp. WH 8103
Synechococcus lividus
Synechococcus sp. PCC 73109
Thermosynechococcus elongatus
Thermosynechococcus sp. NK55
Thermosynechococcus vulcanus
Cyanobium gracile
Cyanobium sp. NIES-981
Dactylococcopsis salina
Chamaesiphon minutus
Leptolyngbya sp. PCC 7376
Leptolyngbya sp. NIES-3755
Leptolyngbya sp. O-77
Leptolyngbya boryana
Halomicronema hongdechloris
Pseudanabaena sp. PCC 7367
Pseudanabaena sp. ABRG5-3
Prochlorococcus marinus subsp. marinus CCMP1375
Prochlorococcus marinus subsp. pastoris CCMP1986
Prochlorococcus marinus MIT 9313
Prochlorococcus marinus NATL2A
Prochlorococcus marinus MIT 9312
Prochlorococcus marinus AS9601
Prochlorococcus marinus MIT 9515
Prochlorococcus marinus MIT 9303
Prochlorococcus marinus MIT 9301
Prochlorococcus marinus MIT 9215
Prochlorococcus marinus MIT 9211
Prochlorococcus marinus NATL1A
Prochlorococcus sp. MIT 0604
Prochlorococcus sp. MIT 0801
Acaryochloris marina
Microcystis aeruginosa
Microcystis panniformis
Microcystis sp. MC19
Cyanobacterium aponinum
Cyanobacterium stanieri
Cyanobacterium sp. HL-69
Halothece sp. PCC 7418
Candidatus Atelocyanobacterium thalassa
Crocosphaera subtropica
Crocosphaera watsonii
Rippkaea orientalis PCC 8801
Rippkaea orientalis PCC 8802
Gloeocapsa sp. PCC 7428
Geminocystis sp. NIES-3709
Geminocystis sp. NIES-3708
Chondrocystis sp. NIES-4102
Cyanothece sp. PCC 7424
Cyanothece sp. PCC 7425
Cyanothece sp. PCC 7822
Trichodesmium erythraeum
Microcoleus sp. PCC 7113
Arthrospira platensis
Planktothrix agardhii
Geitlerinema sp. PCC 7407
Oscillatoria acuminata
Oscillatoria nigro-viridis
Moorea producens
Crinalium epipsammum
Gloeobacter violaceus
Gloeobacter kilaueensis
Nostoc sp. PCC 7120
Nostoc punctiforme
Nostoc sp. PCC 7107
Nostoc sp. PCC 7524
Nostoc sp. NIES-3756
Nostoc flagelliforme
Nostoc sp. CENA543
Trichormus variabilis
'Nostoc azollae' 0708
Anabaena sp. 90
Anabaena cylindrica
Anabaena sp. wa102
Cylindrospermum stagnale
Calothrix sp. PCC 7507
Calothrix sp. PCC 6303
Calothrix sp. 336/3
Rivularia sp. PCC 7116
Fischerella sp. NIES-3754
Nodularia spumigena
Nostocales cyanobacterium HT-58-2
Chroococcidiopsis thermalis
Pleurocapsa sp. PCC 7327
Stanieria cyanosphaera
Stanieria sp. NIES-3757
Cyanobacterium endosymbiont of Epithemia turgida
Cyanobacterium endosymbiont of Rhopalodia gibberula
Thermus thermophilus HB27
Thermus thermophilus HB8
Thermus thermophilus SG0.5JP17-16
Thermus thermophilus JL-18
Thermus scotoductus
Thermus sp. CCB_US3_UF1
Thermus oshimai
Thermus aquaticus
Thermus parvatiensis
Thermus brockianus
Meiothermus ruber DSM 1279
Meiothermus ruber DSM 1279
Meiothermus silvanus
Meiothermus taiwanensis
Methylacidiphilum infernorum
Candidatus Methylomirabilis oxyfera
184%
150%
122%
100%
82%
67%
55%