PeakID (cmd=annotatePeaks.pl Shared_nocontrol_MA_xls.bed mm10 -m MORE+1_VM_v2.0.mot MORE_VM_v2.0.mot soxoct_VM_2.mot -size -100,100)	Chr	Start	End	Strand	Peak Score	Focus Ratio/Region Size	Annotation	Detailed Annotation	Distance to TSS	Nearest PromoterID	Entrez ID	Nearest Unigene	Nearest Refseq	Nearest Ensembl	Gene Name	Gene Alias	Gene Description	Gene Type	CpG%	GC%	MORE+1_VM_v2 Distance From Peak(sequence,strand,conservation)	MORE_VM_v2 Distance From Peak(sequence,strand,conservation)	soxoct_Marson_VM_soxpartStringent Distance From Peak(sequence,strand,conservation)
merged_common-71	chr1	178360715	178360915	+	0.98800	NA	Intergenic	RLTR13D3|LTR|ERVK	-23000	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.000000	0.363184	81(AATGTATTATTCATG,+,0.00),81(AATGTATTATTCATG,-,0.00)		
merged_common-689	chr6	39102720	39102920	+	0.98800	NA	intron (NM_172893, intron 4 of 11)	intron (NM_172893, intron 4 of 11)	15529	NM_172893	243771	Mm.268462	NM_172893	ENSMUSG00000038507	Parp12	9930021O16|AA409132|AA536654|ARTD12|PARP-12|Zc3hdc1	poly (ADP-ribose) polymerase family, member 12	protein-coding	0.010000	0.417910			
merged_common-664	chr5	122900293	122900493	+	0.96567	NA	promoter-TSS (NM_013910)	promoter-TSS (NM_013910)	-43	NM_013910	30841	Mm.86406	NM_013910	ENSMUSG00000029475	Kdm2b	Cxxc2|Fbl10|Fbxl10|Jhdm1b|PCCX2	lysine (K)-specific demethylase 2B	protein-coding	0.155000	0.796020		-6(CATGCATATGCATG,+,0.00),-6(CATGCATATGCATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2269	chr7	100582941	100583141	+	0.95838	NA	promoter-TSS (NM_198831)	promoter-TSS (NM_198831)	89	NR_153427	52443	Mm.473730	NM_198831	ENSMUSG00000030706	Mrpl48	1810030E20Rik|2610028L11Rik|CGI-118|D4Ertd786e|L48mt|MRP-L48	mitochondrial ribosomal protein L48	protein-coding	0.075000	0.567164			
ePOU_nocontrol_ChIP_peaks_unique-2001	chr5	135008879	135009079	+	0.95838	NA	promoter-TSS (NM_145215)	promoter-TSS (NM_145215)	-173	NM_001190437	68758	Mm.389700	NM_145215	ENSMUSG00000040532	Abhd11	1110054D16Rik|A630008N09Rik|Wbscr21	abhydrolase domain containing 11	protein-coding	0.070000	0.572139			
merged_common-243	chr13	91178765	91178965	+	0.95838	NA	intron (NM_025770, intron 2 of 7)	LTR101_Mam|LTR|ERVL	45122	NM_025770	66795	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.015000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-322	chr10	120251821	120252021	+	0.95838	NA	Intergenic	MIRb|SINE|MIR	24861	NM_025431	66225	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.005000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-2273	chr7	109986363	109986563	+	0.95838	NA	promoter-TSS (NM_153525)	promoter-TSS (NM_153525)	-233	NM_153525	233724	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0.085000	0.557214			
ePOU_nocontrol_ChIP_peaks_unique-932	chr15	96286526	96286726	+	0.95838	NA	promoter-TSS (NM_175251)	promoter-TSS (NM_175251)	-896	NM_175251	77044	Mm.17166	NM_175251	ENSMUSG00000033237	Arid2	1700124K17Rik|4432409D24Rik|BAF200|zipzap/p200	AT rich interactive domain 2 (ARID, RFX-like)	protein-coding	0.150000	0.751244			
ePOU_nocontrol_ChIP_peaks_unique-451	chr11	95259210	95259410	+	0.95838	NA	Intergenic	CpG	-2219	NM_053093	93670	Mm.40085	NM_053093	ENSMUSG00000020872	Tac4	AW489379|PPT-C	tachykinin 4	protein-coding	0.110000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-1117	chr17	59432056	59432256	+	0.95838	NA	Intergenic	Intergenic	-418834	NM_001368393	67993	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.015000	0.338308		-38(TATGCATATTCAAT,+,0.00),-38(TATGCATATTCAAT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1525	chr2	181244854	181245054	+	0.95838	NA	Intergenic	Intergenic	-2927	NM_183162	229003	Mm.315872	NM_183162	ENSMUSG00000027580	Helz2	PDIP1|Pric285|mKIAA1769|mPDIP1	helicase with zinc finger 2, transcriptional coactivator	protein-coding	0.015000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-255	chr10	68355933	68356133	+	0.95838	NA	Intergenic	Intergenic	-34891	NR_045357	75148	Mm.23505	NR_045357	ENSMUSG00000112157	4930545H06Rik	-	RIKEN cDNA 4930545H06 gene	ncRNA	0.015000	0.363184			-75(TTTTGCATAAAAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-440	chr11	84088777	84088977	+	0.95838	NA	intron (NM_172562, intron 11 of 15)	MLTR25A|LTR|ERVK	-20520	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.000000	0.388060			
merged_common-348	chr17	10567624	10567824	+	0.95838	NA	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	111508	NR_077239	319750	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.005000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-717	chr13	100730790	100730990	+	0.95838	NA	promoter-TSS (NM_009874)	promoter-TSS (NM_009874)	52	NM_009874	12572	Mm.259718	NM_009874	ENSMUSG00000069089	Cdk7	AI323415|AI528512|C230069N13|Cdkn7|Crk4	cyclin-dependent kinase 7	protein-coding	0.085000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-893	chr15	73645723	73645923	+	0.95838	NA	Intergenic	CpG	-21079	NM_001033219	106068	Mm.212813	NM_001033219	ENSMUSG00000079020	Slc45a4	9330175B01Rik|AW552276	solute carrier family 45, member 4	protein-coding	0.115000	0.726368		-63(CATGACTATGCAGT,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1938	chr5	66981215	66981415	+	0.95838	NA	intron (NM_001256122, intron 3 of 20)	intron (NM_001256122, intron 3 of 20)	12887	NM_001256122	77569	Mm.374778	NM_001001980	ENSMUSG00000037736	Limch1	3732412D22Rik|mKIAA1102	LIM and calponin homology domains 1	protein-coding	0.005000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-2087	chr6	54042058	54042258	+	0.95838	NA	intron (NM_001163640, intron 1 of 12)	intron (NM_001163640, intron 1 of 12)	2226	NM_001163640	69993	Mm.321147	NM_023543	ENSMUSG00000004633	Chn2	1700026N20Rik|4930557O16Rik|ARHGAP3|Bch	chimerin 2	protein-coding	0.000000	0.358209	47(AATGAATAATTCAGA,+,0.00),47(AATGAATAATTCAGA,-,0.00)		-81(ACTATTTCATGTAAAT,+,0.00),-17(ACTTTGTCTTGCAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-135	chr1	159592126	159592326	+	0.95838	NA	intron (NM_022312, intron 1 of 22)	intron (NM_022312, intron 1 of 22)	68457	NM_022312	21960	Mm.44701	NM_022312	ENSMUSG00000015829	Tnr	J1-tenascin|TN-R|janusin|restrictin	tenascin R	protein-coding	0.005000	0.388060		41(CATAAATTTGCATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-724	chr13	105754237	105754437	+	0.95838	NA	Intergenic	Intergenic	310644	NM_008308	15550	Mm.4716	NM_008308	ENSMUSG00000021721	Htr1a	Gpcr18	5-hydroxytryptamine (serotonin) receptor 1A	protein-coding	0.000000	0.353234			84(TAATTGTAATGCAATT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-881	chr15	59648439	59648639	+	0.95838	NA	promoter-TSS (NM_144549)	promoter-TSS (NM_144549)	-115	NM_144549	211770	Mm.40298	NM_144549	ENSMUSG00000032501	Trib1	A530090O15Rik|TRB-1|Trb1	tribbles pseudokinase 1	protein-coding	0.065000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-1049	chr17	9536121	9536321	+	0.95838	NA	Intergenic	Charlie19a|DNA|hAT-Charlie	133483	NM_001163836	67543	Mm.26987	NM_026226	ENSMUSG00000046173	Pabpc6	4932702K14Rik|AI428050|Pabpc3	poly(A) binding protein, cytoplasmic 6	protein-coding	0.010000	0.328358			-79(ATTTACAAAATTATTG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2187	chr7	24506888	24507088	+	0.95838	NA	promoter-TSS (NR_110958)	promoter-TSS (NR_110958)	-99	NM_146183	232969	Mm.181332	NM_146183	ENSMUSG00000064264	Zfp428	2410005H09Rik|AV271806|AW047854|Znf428	zinc finger protein 428	protein-coding	0.045000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-564	chr12	69772349	69772549	+	0.95838	NA	intron (NM_183294, intron 2 of 9)	intron (NM_183294, intron 2 of 9)	-8505	NR_030450	751538		NR_030450	ENSMUSG00000076065	Mir681	Mirn681|mmu-mir-681	microRNA 681	ncRNA	0.000000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-2255	chr7	90024951	90025151	+	0.95838	NA	Intergenic	URR1A|DNA|hAT-Charlie	-4108	NR_110364	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0.015000	0.398010			-48(GAATTGTAATGTAAAT,+,0.00),12(ATTTGCCTTACAAAGG,-,0.00),67(TTTTTGTCTTGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2232	chr7	68213842	68214042	+	0.95838	NA	intron (NM_010513, intron 18 of 20)	intron (NM_010513, intron 18 of 20)	50291	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.015000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-2048	chr6	29609633	29609833	+	0.95838	NA	5' UTR (NM_177296, exon 1 of 23)	5' UTR (NM_177296, exon 1 of 23)	116	NM_177296	320938	Mm.276381	NM_177296	ENSMUSG00000012535	Tnpo3	5730544L10Rik|C430013M08Rik|C81142|D6Ertd313e|Trn-SR|mKIAA4133	transportin 3	protein-coding	0.080000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-1395	chr2	73086076	73086276	+	0.95838	NA	Intergenic	L2|LINE|L2	-105730	NM_001018042	20687	Mm.124328	NM_011450	ENSMUSG00000027109	Sp3	D130027J01Rik	trans-acting transcription factor 3	protein-coding	0.020000	0.527363			-73(ATCTACATCACAATGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1578	chr3	54084938	54085138	+	0.95838	NA	Intergenic	Intergenic	-71019	NM_016984	22066	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.000000	0.353234		-98(TATGCTTATGCAAA,-,0.00),-34(AATGCATATTCAGT,+,0.00),-34(AATGCATATTCAGT,-,0.00)	2(AGATTATCTTTCAAAG,+,0.00),61(GTTTCCATGACTAACA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1191	chr18	38992939	38993139	+	0.95838	NA	promoter-TSS (NM_001361073)	promoter-TSS (NM_001361073)	-106	NM_175164	71302	Mm.329396	NM_175164	ENSMUSG00000036452	Arhgap26	1810044B20Rik|2610010G17Rik|4933432P15Rik|AI853435|mKIAA0621	Rho GTPase activating protein 26	protein-coding	0.090000	0.686567			
merged_common-261	chr14	60218140	60218340	+	0.95838	NA	3' UTR (NM_001362439, exon 14 of 14)	3' UTR (NM_001362439, exon 14 of 14)	10675	NR_030458	751526		NR_030458	ENSMUSG00000076270	Mir719	Mirn719|mmu-mir-719	microRNA 719	ncRNA	0.005000	0.288557		-45(TATGAAAATGTATA,+,0.00),-6(TATAAATATTCAGA,-,0.00)	9(ATTTGCAGCATAATAC,-,0.00)
merged_common-11	chr1	52553951	52554151	+	0.95838	NA	Intergenic	Intergenic	26241	NR_151614	102634661	Mm.337881	NR_151614	ENSMUSG00000099878	Gm28178	-	predicted gene 28178	ncRNA	0.015000	0.393035		-1(TCTGCATATTCATA,+,0.00),-1(TCTGCATATTCATA,-,0.00)	
merged_common-815	chr8	125665887	125666087	+	0.95838	NA	Intergenic	Intergenic	-3831	NM_028908	74393	Mm.41709	NM_028908	ENSMUSG00000050930	Map10	4933403G14Rik|AI835009|mKIAA1383	microtubule-associated protein 10	protein-coding	0.010000	0.452736			-24(CCATTGTTATTTAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-253	chr10	68275553	68275753	+	0.95838	NA	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	3073	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.020000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-1728	chr4	20564717	20564917	+	0.95838	NA	intron (NM_172987, intron 1 of 4)	RLTR22_Mur|LTR|ERVK	213851	NM_172987	269513	Mm.317473	NM_172987	ENSMUSG00000055761	Nkain3	C530048M05|E130310K16Rik	Na+/K+ transporting ATPase interacting 3	protein-coding	0.000000	0.328358			
ePOU_nocontrol_ChIP_peaks_unique-2261	chr7	93336625	93336825	+	0.95838	NA	Intergenic	Intergenic	-152549	NM_001358087	100040298	Mm.260904	NM_001358087		Gm15501	EyeLinc5	predicted pseudogene 15501	protein-coding	0.000000	0.348259	-55(AATGCATTATTTATG,+,0.00),-55(AATGCATTATTTATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1468	chr2	130752526	130752726	+	0.95838	NA	intron (NM_029432, intron 20 of 36)	L1M4|LINE|L1	51475	NR_024097	100043766	Mm.447040	NR_024097		Gm14057	-	Ppp1r14c pseudogene	pseudo	0.010000	0.373134			
merged_common-715	chr6	115676463	115676663	+	0.95838	NA	promoter-TSS (NM_029780)	promoter-TSS (NM_029780)	72	NM_029780	110157	Mm.184163	NM_029780	ENSMUSG00000000441	Raf1	6430402F14Rik|AA990557|BB129353|Craf1|D830050J10Rik|Raf-1|c-Raf|cRaf|v-Raf	v-raf-leukemia viral oncogene 1	protein-coding	0.120000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-606	chr12	100166324	100166524	+	0.95838	NA	Intergenic	MER77B|LTR|ERVL	-6771	NM_001290303	217827	Mm.224076	NM_183155	ENSMUSG00000021179	Nrde2	6720454P05Rik	nrde-2 necessary for RNA interference, domain containing	protein-coding	0.005000	0.432836		41(CATGAATATGCATG,+,0.00),41(CATGAATATGCATG,-,0.00)	46(ATATGCATGAGAGATT,-,0.00),81(ATATAAAAAACAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2148	chr6	119115016	119115216	+	0.95838	NA	intron (NM_009781, intron 1 of 46)	intron (NM_009781, intron 1 of 46)	-6621	NM_001159535	12288	Mm.41628	NM_009781	ENSMUSG00000051331	Cacna1c	Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC	calcium channel, voltage-dependent, L type, alpha 1C subunit	protein-coding	0.025000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-1854	chr4	134396064	134396264	+	0.95838	NA	promoter-TSS (NM_001285875)	promoter-TSS (NM_001285875)	-156	NM_133880	100163	Mm.22116	NM_133880	ENSMUSG00000037366	Pafah2	2310074E22Rik|AI507170	platelet-activating factor acetylhydrolase 2	protein-coding	0.055000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-2100	chr6	71731256	71731456	+	0.95838	NA	intron (NM_178608, intron 1 of 6)	intron (NM_178608, intron 1 of 6)	23675	NM_178608	52250	Mm.146332	NM_178608	ENSMUSG00000052852	Reep1	D6Ertd253e	receptor accessory protein 1	protein-coding	0.005000	0.412935			-11(GTTCTCTTATTCAAAG,+,0.00)
merged_common-440	chr19	49716837	49717037	+	0.95838	NA	Intergenic	Intergenic	961709	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.010000	0.318408			
ePOU_nocontrol_ChIP_peaks_unique-839	chr15	8109329	8109529	+	0.95838	NA	5' UTR (NM_133227, exon 1 of 35)	5' UTR (NM_133227, exon 1 of 35)	116	NM_133227	170762	Mm.295168	NM_133227	ENSMUSG00000022142	Nup155	D930027M19Rik|mKIAA0791	nucleoporin 155	protein-coding	0.100000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-1496	chr2	150982378	150982578	+	0.95838	NA	intron (NM_207204, intron 1 of 23)	intron (NM_207204, intron 1 of 23)	26920	NM_207204	78177	Mm.120911	NM_207204	ENSMUSG00000068115	Ninl	4930519N13Rik|Gm1004|Gm1634|mKIAA0980	ninein-like	protein-coding	0.000000	0.323383	-39(TATACATTATACATG,+,0.00),-39(TATACATTATACATG,-,0.00)		48(ATATTCTGATGTAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2301	chr7	121700176	121700376	+	0.95838	NA	intron (NM_001033173, intron 1 of 15)	L1M3|LINE|L1	7166	NM_001033173	76179	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	0.005000	0.363184			15(ATTTCCAAACCAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1644	chr3	96161221	96161421	+	0.95838	NA	promoter-TSS (NM_181409)	promoter-TSS (NM_181409)	-649	NM_181409	194126	Mm.268536	NM_181409	ENSMUSG00000045934	Mtmr11	AI035306|BC051083|Cra	myotubularin related protein 11	protein-coding	0.015000	0.502488	-7(CATGAATCATTCATT,+,0.00),-7(CATGAATCATTCATT,-,0.00)		-99(TCTTTGCTTTTTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-940	chr15	101283933	101284133	+	0.95838	NA	promoter-TSS (NM_026566)	promoter-TSS (NM_026566)	-268	NM_026566	68118	Mm.482360	NM_026566	ENSMUSG00000037204	Atg101	9430023L20Rik|AA407441|AU022967	autophagy related 101	protein-coding	0.055000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-1937	chr5	65436325	65436525	+	0.95838	NA	promoter-TSS (NM_009466)	promoter-TSS (NM_009466)	-583	NM_009466	22235	Mm.344831	NM_009466	ENSMUSG00000029201	Ugdh	Udpgdh	UDP-glucose dehydrogenase	protein-coding	0.060000	0.567164			
ePOU_nocontrol_ChIP_peaks_unique-1230	chr18	69992530	69992730	+	0.95838	NA	intron (NM_001302799, intron 3 of 5)	intron (NM_001302799, intron 3 of 5)	60958	NM_001302798	80718	Mm.246753	NM_030554	ENSMUSG00000024511	Rab27b	2310021G14Rik|B130064M09Rik	RAB27B, member RAS oncogene family	protein-coding	0.010000	0.457711			74(ACTTTTTTTTTCATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2030	chr6	12815429	12815629	+	0.95838	NA	Intergenic	RLTR11A2|LTR|ERVK	-66276	NM_001164805	330267	Mm.11989	NM_001164805	ENSMUSG00000032625	Thsd7a	Gm837	thrombospondin, type I, domain containing 7A	protein-coding	0.000000	0.402985			-9(GTATTGTAATGCTAAA,+,0.00),63(CTTTTGTTGTGCAAAC,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-602	chr12	99264257	99264457	+	0.95838	NA	intron (NM_183186, intron 4 of 5)	intron (NM_183186, intron 4 of 5)	-101549	NR_038130	67639	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.005000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-2257	chr7	90262044	90262244	+	0.95838	NA	intron (NM_029256, intron 1 of 7)	intron (NM_029256, intron 1 of 7)	3288	NM_029256	75338	Mm.487222	NM_029256	ENSMUSG00000030617	Ccdc83	4930549K11Rik|4930554C01Rik|4932423M01Rik	coiled-coil domain containing 83	protein-coding	0.020000	0.407960	-79(CATGAATAATTCATG,+,0.00),-79(CATGAATAATTCATG,-,0.00)		-17(ATTAGCAAGACAATTG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2377	chr8	46480766	46480966	+	0.95838	NA	intron (NM_007981, intron 1 of 20)	intron (NM_007981, intron 1 of 20)	9829	NM_007981	14081	Mm.210323	NM_007981	ENSMUSG00000018796	Acsl1	Acas|Acas1|Acs|FACS|Facl2|LACS 1|LACS1	acyl-CoA synthetase long-chain family member 1	protein-coding	0.005000	0.363184			28(ATTTTGTTATGCATTT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-150	chr13	63980080	63980280	+	0.95838	NA	Intergenic	Intergenic	109021	NM_008291	15487	Mm.5109	NM_008291	ENSMUSG00000033122	Hsd17b3	-	hydroxysteroid (17-beta) dehydrogenase 3	protein-coding	0.015000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-1871	chr4	151604602	151604802	+	0.95838	NA	intron (NM_001081557, intron 3 of 23)	intron (NM_001081557, intron 3 of 23)	257066	NM_001195565	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.065000	0.611940			
merged_common-339	chr16	82816777	82816977	+	0.95838	NA	Intergenic	Intergenic	-1554266	NR_040567	75247	Mm.417813	NR_040567	ENSMUSG00000116907	4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0.010000	0.338308		-38(AATGAATATGGATG,+,0.00),-38(AATGAATATGGATG,-,0.00)	74(GTATTTTCATGTAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-871	chr15	44860506	44860706	+	0.95838	NA	Intergenic	Intergenic	-20788	NR_033609	239410	Mm.352401	NR_033609	ENSMUSG00000060530	A930017M01Rik	Gm305	Smg-5 homolog, nonsense mediated mRNA decay factor pseudogene	pseudo	0.005000	0.343284	-12(GTTGCATTATGCATA,+,0.00),-12(GTTGCATTATGCATA,-,0.00)	26(TTTAAATATGCATA,+,0.00),32(TATGCATATGTAGG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2009	chr5	138941324	138941524	+	0.95838	NA	Intergenic	Intergenic	52857	NR_156469	18590	Mm.2675	NM_008808	ENSMUSG00000025856	Pdgfa	PDGF-1	platelet derived growth factor, alpha	protein-coding	0.005000	0.452736	18(TATGCATTATGTATG,+,0.00),18(TATGCATTATGTATG,-,0.00)		-11(GCACTGTCATGTATAT,+,0.00),1(ATATACATGTCAAAGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-943	chr15	102350586	102350786	+	0.95838	NA	promoter-TSS (NM_153416)	promoter-TSS (NM_153416)	73	NM_153416	223921	Mm.352946	NM_153416	ENSMUSG00000036678	Aaas	AAA|ADRACALA|D030041N15Rik|GL003	achalasia, adrenocortical insufficiency, alacrimia	protein-coding	0.100000	0.621891			
Oct4_nocontrol_ChIP_peaks_unique-164	chr14	7954149	7954349	+	0.95838	NA	Intergenic	Intergenic	-3051	NM_001371278									0.020000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-936	chr15	98934479	98934679	+	0.95838	NA	promoter-TSS (NM_011654)	promoter-TSS (NM_011654)	-189	NM_011654	22143	Mm.392113	NM_011654	ENSMUSG00000023004	Tuba1b	Tuba2	tubulin, alpha 1B	protein-coding	0.165000	0.830846			
ePOU_nocontrol_ChIP_peaks_unique-1470	chr2	132816090	132816290	+	0.95838	NA	promoter-TSS (NM_175113)	promoter-TSS (NM_175113)	49	NM_025676	66634	Mm.157070	NM_025676	ENSMUSG00000027353	Mcm8	5730432L01Rik	minichromosome maintenance 8 homologous recombination repair factor	protein-coding	0.105000	0.611940			
Oct4_nocontrol_ChIP_peaks_unique-270	chr18	83681756	83681956	+	0.95838	NA	Intergenic	Intergenic	-355972	NR_045361	70960	Mm.410834	NR_045361	ENSMUSG00000118333	4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.010000	0.412935		0(AATGCATATTCAGC,+,0.00),0(AATGCATATTCAGC,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1582	chr3	56437253	56437453	+	0.95838	NA	Intergenic	Intergenic	-253652	NM_030595	26422	Mm.384353	NM_030595	ENSMUSG00000027799	Nbea	Lyst2|mKIAA1544	neurobeachin	protein-coding	0.005000	0.398010			2(TAATTGACATGTTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1418	chr2	91526799	91526999	+	0.95838	NA	intron (NM_001165989, intron 1 of 43)	CpG	137	NM_001165989	75786	Mm.168478	NM_029437	ENSMUSG00000040549	Ckap5	3110043H24Rik|4930432B04Rik|D730027C18Rik|T25636|mKIAA0097	cytoskeleton associated protein 5	protein-coding	0.140000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-407	chr11	61761920	61762120	+	0.95838	NA	promoter-TSS (NM_001164244)	promoter-TSS (NM_001164244)	68	NM_001164243	212627	Mm.27703	NM_144806	ENSMUSG00000020528	Prpsap2	A230054F23Rik|PAP41	phosphoribosyl pyrophosphate synthetase-associated protein 2	protein-coding	0.115000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-2527	chr9	56398162	56398362	+	0.95838	NA	intron (NM_172924, intron 1 of 6)	MIR|SINE|MIR	19788	NM_172924	244895	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0.010000	0.333333			-81(ATTTTGCAATTCAAAT,+,0.00),-63(CTATTGTTTTGTAGAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-30	chr1	53773801	53774001	+	0.95838	NA	intron (NM_133810, intron 2 of 7)	intron (NM_133810, intron 2 of 7)	11314	NM_133810	98267	Mm.25559	NM_133810	ENSMUSG00000026094	Stk17b	3110009A03Rik|AI120141|Drak2	serine/threonine kinase 17b (apoptosis-inducing)	protein-coding	0.015000	0.318408		-82(ATTTCATATGCATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2020	chr5	146832977	146833177	+	0.95838	NA	5' UTR (NM_019647, exon 1 of 6)	5' UTR (NM_019647, exon 1 of 6)	187	NM_019647	19933	Mm.316592	NM_019647	ENSMUSG00000041453	Rpl21	8430440E03Rik|L21	ribosomal protein L21	protein-coding	0.105000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-1275	chr19	22268090	22268290	+	0.95838	NA	intron (NM_001035239, intron 1 of 24)	intron (NM_001035239, intron 1 of 24)	129144	NM_001035240	226025	Mm.131943	NM_177341	ENSMUSG00000052387	Trpm3	6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2	transient receptor potential cation channel, subfamily M, member 3	protein-coding	0.005000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-1465	chr2	128430943	128431143	+	0.95838	NA	Intergenic	Intergenic	-1692	NR_028590	100043424	Mm.297222	NR_028589		Morrbid	Gm14005|Mir4435-2hg	myeloid RNA regulator of BCL2L11 induced cell death	ncRNA	0.020000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-681	chr13	69534684	69534884	+	0.95838	NA	promoter-TSS (NM_198600)	promoter-TSS (NM_198600)	-920	NM_001169131	210106	Mm.315959	NM_198600	ENSMUSG00000034575	Tent4a	LAK-1|POLK|Papd7|Pols|TRF4|TRF4-1	terminal nucleotidyltransferase 4A	protein-coding	0.155000	0.756219			
merged_common-42	chr1	125560175	125560375	+	0.95838	NA	promoter-TSS (NM_028787)	promoter-TSS (NM_028787)	-320	NM_001356294	74150	Mm.28654	NM_028787	ENSMUSG00000026342	Slc35f5	1300003P13Rik|AI646727	solute carrier family 35, member F5	protein-coding	0.035000	0.557214			
ePOU_nocontrol_ChIP_peaks_unique-989	chr16	33187111	33187311	+	0.95838	NA	intron (NM_176840, intron 1 of 12)	B1_Mur2|SINE|Alu	2140	NM_176840	106326	Mm.486405	NM_176840	ENSMUSG00000022807	Osbpl11	9430097N02Rik|AI132306|AU019795|ORP-11	oxysterol binding protein-like 11	protein-coding	0.015000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-2541	chr9	63819187	63819387	+	0.95838	NA	Intergenic	L1ME4c|LINE|L1	-61293	NM_016769	17127	Mm.7320	NM_016769	ENSMUSG00000032402	Smad3	AU022421|Madh3	SMAD family member 3	protein-coding	0.000000	0.358209	-11(CATGCATAAAACATT,+,0.00),-11(CATGCATAAAACATT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2376	chr8	45233376	45233576	+	0.95838	NA	Intergenic	MLTR14|LTR|ERV1	28555	NM_028066	109821	Mm.33326	NM_028066	ENSMUSG00000031645	F11	1600027G01Rik|AI503996|Cf11|FXI|PTA	coagulation factor XI	protein-coding	0.005000	0.432836	-64(ACTTAATTATGCATG,+,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1590	chr3	65145294	65145494	+	0.95838	NA	intron (NR_126080, intron 3 of 4)	intron (NR_126080, intron 3 of 4)	36380	NM_010597	16497	Mm.316402	NM_010597	ENSMUSG00000027827	Kcnab1	Akr8a8|Kvbeta1.1|mKv(beta)1	potassium voltage-gated channel, shaker-related subfamily, beta member 1	protein-coding	0.020000	0.477612			
merged_common-794	chr8	83608214	83608414	+	0.95838	NA	promoter-TSS (NM_001308227)	promoter-TSS (NM_001308227)	139	NM_018808	81489	Mm.282092	NM_018808	ENSMUSG00000005483	Dnajb1	0610007I11Rik|DjB1|HSPF1|Hdj1|Hsp40	DnaJ heat shock protein family (Hsp40) member B1	protein-coding	0.120000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-1139	chr17	78936998	78937198	+	0.95838	NA	promoter-TSS (NM_028611)	promoter-TSS (NM_028611)	-28	NM_001024806	12607	Mm.24169	NM_009882	ENSMUSG00000024081	Cebpz	AI848081|CBF2|Cbf|Cebpa-rs1	CCAAT/enhancer binding protein zeta	protein-coding	0.105000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-1837	chr4	124021552	124021752	+	0.95838	NA	Intergenic	Intergenic	104219	NM_017475	54170	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.015000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-2237	chr7	76788819	76789019	+	0.95838	NA	intron (NM_001199224, intron 21 of 22)	intron (NM_001199224, intron 21 of 22)	559032	NM_001199224	244071	Mm.322829	NM_172902	ENSMUSG00000025754	Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding	0.000000	0.363184	12(TATACATTATTCAGT,-,0.00)		71(CATTGCTTATGCTAAT,+,0.00)
merged_common-776	chr8	27023664	27023864	+	0.95838	NA	promoter-TSS (NM_153592)	promoter-TSS (NM_153592)	-35	NM_153592	244373	Mm.277699	NM_153592	ENSMUSG00000031483	Erlin2	BC036333|C87251|Spfh2	ER lipid raft associated 2	protein-coding	0.115000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-98	chr1	124409755	124409955	+	0.95838	NA	Intergenic	Eulor8|DNA|TcMar?	-364296	NM_199021	269109	Mm.417716	NM_199021	ENSMUSG00000036815	Dpp10	6430601K09Rik|DPP X|Dprp3	dipeptidylpeptidase 10	protein-coding	0.005000	0.318408			
ePOU_nocontrol_ChIP_peaks_unique-1718	chr4	3416758	3416958	+	0.95838	NA	Intergenic	Intergenic	-120232	NR_037306	100499523		NR_037306	ENSMUSG00000094253	Mir3471-2	mmu-mir-3471-2	microRNA 3471-2	ncRNA	0.025000	0.542289			
ePOU_nocontrol_ChIP_peaks_unique-1404	chr2	79047765	79047965	+	0.95838	NA	Intergenic	L3|LINE|CR1	178187	NM_001356395	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.005000	0.333333			-45(TGATTCTTATGTAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-646	chr13	28953631	28953831	+	0.95838	NA	promoter-TSS (NM_009238)	promoter-TSS (NM_009238)	-32	NM_009238	20677	Mm.240627	NM_009238	ENSMUSG00000076431	Sox4	AA682046|Sox-4	SRY (sex determining region Y)-box 4	protein-coding	0.050000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-398	chr11	58326839	58327039	+	0.95838	NA	intron (NM_001256520, intron 1 of 2)	B3|SINE|B2	3400	NM_001256520	319475	Mm.72124	NM_178761	ENSMUSG00000049755	Zfp672	4930488P06Rik|4930511N19Rik|Znf672	zinc finger protein 672	protein-coding	0.005000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-2198	chr7	29071099	29071299	+	0.95838	NA	intron (NM_009109, intron 49 of 105)	intron (NM_009109, intron 49 of 105)	12495	NR_035489	100316710		NR_035489	ENSMUSG00000089219	Mir1963	mir-1963|mmu-mir-1963	microRNA 1963	ncRNA	0.015000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-605	chr12	99577081	99577281	+	0.95838	NA	intron (NR_136760, intron 2 of 3)	Lx10|LINE|L1	13340	NR_136760	102639404	Mm.396324	NR_136760	ENSMUSG00000097917	Gm26839	-	predicted gene, 26839	ncRNA	0.015000	0.487562			-99(CAATGGTTATGTTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-983	chr16	29657719	29657919	+	0.95838	NA	Intergenic	Intergenic	78485	NM_133752	74143	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	0.035000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-75	chr1	86487458	86487658	+	0.95838	NA	Intergenic	CpG	-38999	NM_001360830	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.140000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-887	chr15	63639865	63640065	+	0.95838	NA	Intergenic	B3A|SINE|B2	-160357	NR_045279	432958	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.005000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-877	chr15	56004012	56004212	+	0.95838	NA	Intergenic	Intergenic	-97163	NM_016667	20649	Mm.309425	NM_016667	ENSMUSG00000060429	Sntb1	-	syntrophin, basic 1	protein-coding	0.010000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-49	chr1	63176803	63177003	+	0.95838	NA	promoter-TSS (NM_001160039)	promoter-TSS (NM_001160039)	72	NM_018796	55949	Mm.2718	NM_018796	ENSMUSG00000025967	Eef1b2	2810017J07Rik|Eef1b	eukaryotic translation elongation factor 1 beta 2	protein-coding	0.080000	0.552239			
ePOU_nocontrol_ChIP_peaks_unique-1588	chr3	63325749	63325949	+	0.95838	NA	intron (NM_008604, intron 3 of 22)	intron (NM_008604, intron 3 of 22)	29754	NM_001289463	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.005000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-590	chr12	91583484	91583684	+	0.95838	NA	intron (NM_031391, intron 2 of 8)	intron (NM_031391, intron 2 of 8)	6065	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.025000	0.402985			-34(CTTAACATAACAAAAA,-,0.00)
merged_common-345	chr16	97851407	97851607	+	0.95838	NA	promoter-TSS (NM_144789)	promoter-TSS (NM_144789)	-280	NM_144789	114604	Mm.328741	NM_144789	ENSMUSG00000014039	Prdm15	C21orf83|E130018M06Rik|ORF62|Zfp298	PR domain containing 15	protein-coding	0.145000	0.766169			
ePOU_nocontrol_ChIP_peaks_unique-944	chr15	102405365	102405565	+	0.95838	NA	promoter-TSS (NM_013672)	promoter-TSS (NM_013672)	-851	NM_013672	20683	Mm.4618	NM_013672	ENSMUSG00000001280	Sp1	1110003E12Rik|AA450830|AI845540|Sp1-1	trans-acting transcription factor 1	protein-coding	0.090000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-1161	chr18	9450078	9450278	+	0.95838	NA	promoter-TSS (NM_026484)	promoter-TSS (NM_026484)	-24	NM_026484	67974	Mm.86523	NM_026484	ENSMUSG00000024286	Ccny	1700025H17Rik|3110050L10Rik|4631402G10Rik|5730405I09Rik	cyclin Y	protein-coding	0.130000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-310	chr10	111488042	111488242	+	0.95838	NA	intron (NR_152558, intron 4 of 14)	intron (NR_152558, intron 4 of 14)	-12646	NR_033603	382421	Mm.245643	NR_033603	ENSMUSG00000111997	Gm5176	EG382421	high mobility group box 2 pseudogene	pseudo	0.010000	0.328358	48(ATTGAATAATTTATA,+,0.00)		
merged_common-676	chr5	147379474	147379674	+	0.95838	NA	intron (NM_010229, intron 2 of 23)	RLTR11B|LTR|ERVK	20915	NM_010229	14255	Mm.194	NM_010229	ENSMUSG00000042817	Flt3	B230315G04|CD135|Flk-2|Flk2|Flt-3|Ly72|wmfl	FMS-like tyrosine kinase 3	protein-coding	0.005000	0.388060			44(CCTTTGTTATGCAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-144	chr1	165236892	165237092	+	0.95838	NA	promoter-TSS (NM_145513)	promoter-TSS (NM_145513)	-32	NM_001357410	226591	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	0.120000	0.706468			
Oct4_nocontrol_ChIP_peaks_unique-34	chr1	169531545	169531745	+	0.95838	NA	promoter-TSS (NM_023284)	promoter-TSS (NM_023284)	-181	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.050000	0.542289			
ePOU_nocontrol_ChIP_peaks_unique-1312	chr19	45946969	45947169	+	0.95838	NA	intron (NM_198296, intron 14 of 25)	intron (NM_198296, intron 14 of 25)	-51068	NR_152221	100174921	Mm.487206	NR_152221		4930505N22Rik	-	RIKEN cDNA 4930505N22 gene	ncRNA	0.005000	0.348259		-94(AATATATATTCATA,-,0.00)	
merged_common-619	chr4	148626743	148626943	+	0.95838	NA	non-coding (NR_027864, exon 1 of 8)	non-coding (NR_027864, exon 1 of 8)	153	NM_001008546	230908	Mm.22453	NM_145556	ENSMUSG00000041459	Tardbp	1190002A23Rik|C85084|TDP-43|Tdp43	TAR DNA binding protein	protein-coding	0.085000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-1905	chr5	24423589	24423789	+	0.95838	NA	promoter-TSS (NM_007668)	promoter-TSS (NM_007668)	-125	NM_007668	12568	Mm.298798	NM_007668	ENSMUSG00000028969	Cdk5	AW048668|Crk6	cyclin-dependent kinase 5	protein-coding	0.075000	0.592040			
Oct4_nocontrol_ChIP_peaks_unique-143	chr13	37016118	37016318	+	0.95838	NA	intron (NM_028784, intron 3 of 14)	intron (NM_028784, intron 3 of 14)	32995	NM_028784	74145	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0.000000	0.273632			
ePOU_nocontrol_ChIP_peaks_unique-689	chr13	76101944	76102144	+	0.95838	NA	intron (NM_001081352, intron 2 of 43)	intron (NM_001081352, intron 2 of 43)	3310	NM_001081352	218343	Mm.277964	NM_001081352	ENSMUSG00000033991	Ttc37	-	tetratricopeptide repeat domain 37	protein-coding	0.005000	0.308458			63(CTTTTCTTATGGAAAC,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2454	chr8	109693259	109693459	+	0.95838	NA	promoter-TSS (NM_028018)	promoter-TSS (NM_028018)	-65	NR_155034	71955	Mm.290036	NM_028018	ENSMUSG00000031729	Ist1	2400003C14Rik|AW536298|mKIAA0174	increased sodium tolerance 1 homolog (yeast)	protein-coding	0.085000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-2234	chr7	73618069	73618269	+	0.95838	NA	Intergenic	CpG	-59774	NR_037569	69170	Mm.34539	NR_037569	ENSMUSG00000101970	1810026B05Rik	-	RIKEN cDNA 1810026B05 gene	ncRNA	0.090000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-2154	chr6	124805964	124806164	+	0.95838	NA	Intergenic	Lx9|LINE|L1	-2597	NM_001306050	14794	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.010000	0.437811		-84(TATGTATAAGCATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1765	chr4	62408874	62409074	+	0.95838	NA	promoter-TSS (NM_139291)	promoter-TSS (NM_139291)	191	NM_027297	70052	Mm.30660	NM_027297	ENSMUSG00000066148	Prpf4	1600015H11Rik|AI874830|AW047464|bN189G18.1	pre-mRNA processing factor 4	protein-coding	0.045000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-603	chr12	99299915	99300115	+	0.95838	NA	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	-137207	NR_038130	67639	Mm.87374	NR_038130	ENSMUSG00000113210	4930474N09Rik	-	RIKEN cDNA 4930474N09 gene	ncRNA	0.005000	0.373134			
Oct4_nocontrol_ChIP_peaks_unique-161	chr13	108949102	108949302	+	0.95838	NA	intron (NM_011056, intron 2 of 16)	L1MA9|LINE|L1	295025	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.005000	0.363184		-75(CATGCATATGCAAA,+,0.00),-75(CATGCATATGCAAA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-405	chr11	61408001	61408201	+	0.95838	NA	Intergenic	CpG	-30026	NM_026183	67473	Mm.100741	NM_026183	ENSMUSG00000010122	Slc47a1	1300013J15Rik|AI036982|MATE1|mMATE1	solute carrier family 47, member 1	protein-coding	0.100000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-1107	chr17	47502123	47502323	+	0.95838	NA	promoter-TSS (NM_022015)	promoter-TSS (NM_022015)	68	NM_022015	63856	Mm.275901	NM_022015	ENSMUSG00000023980	Taf8	AW260255|Tbn	TATA-box binding protein associated factor 8	protein-coding	0.100000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-1517	chr2	165884678	165884878	+	0.95838	NA	promoter-TSS (NM_001252587)	promoter-TSS (NM_001252587)	60	NM_001252584	228880	Mm.227598	NM_027230	ENSMUSG00000039671	Zmynd8	1110013E22Rik|2010005I16Rik|3632413B07Rik|AI316811|AL024039|Prkcbp1|RACK7	zinc finger, MYND-type containing 8	protein-coding	0.050000	0.532338			
ePOU_nocontrol_ChIP_peaks_unique-2360	chr8	34855672	34855872	+	0.95838	NA	intron (NM_175091, intron 14 of 26)	intron (NM_175091, intron 14 of 26)	48162	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.015000	0.258706	-37(AATGAATCATGTATA,+,0.00),-37(AATGAATCATGTATA,-,0.00)		-21(ATTTTAATAAGAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-922	chr15	89638267	89638467	+	0.95838	NA	Intergenic	MTB-int|LTR|ERVL-MaLR	-46444	NM_026817	68708	Mm.23258	NM_026817	ENSMUSG00000022621	Rabl2	1110031N17Rik|AW549303|Rabl2a	RAB, member RAS oncogene family-like 2	protein-coding	0.000000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-260	chr10	72986885	72987085	+	0.95838	NA	intron (NR_040646, intron 2 of 4)	intron (NR_040646, intron 2 of 4)	99720	NR_040646	327768	Mm.417745	NR_040646	ENSMUSG00000111994	A330049N07Rik	-	RIKEN cDNA A330049N07 gene	ncRNA	0.015000	0.298507			
merged_common-350	chr17	11887291	11887491	+	0.95838	NA	intron (NM_016694, intron 9 of 11)	intron (NM_016694, intron 9 of 11)	-4202	NR_045808	52027	Mm.442257	NR_045808		D17Ertd648e	-	DNA segment, Chr 17, ERATO Doi 648, expressed	ncRNA	0.005000	0.323383			
ePOU_nocontrol_ChIP_peaks_unique-1042	chr17	5007286	5007486	+	0.95838	NA	intron (NM_001085355, intron 1 of 19)	intron (NM_001085355, intron 1 of 19)	12312	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.040000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-2538	chr9	63132864	63133064	+	0.95838	NA	Intergenic	Intergenic	14016	NM_172446	207667	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.105000	0.666667			
merged_common-117	chr10	95461278	95461478	+	0.95838	NA	Intergenic	RLTR12B2|LTR|ERVK	40571	NM_001359476	67270	Mm.30008	NM_026065	ENSMUSG00000062981	Mrpl42	2700009F22Rik|2900055D03Rik|D10Ertd322e|HSPC204|L31mt|L42mt|MRP-L31|MRP-L42|MRP-S32|PTD007|Rpml31|S32mt	mitochondrial ribosomal protein L42	protein-coding	0.010000	0.432836			-46(ATAAACATAACAAAGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2523	chr9	54649344	54649544	+	0.95838	NA	intron (NM_053178, intron 1 of 13)	intron (NM_053178, intron 1 of 13)	12441	NM_053178	94180	Mm.20592	NM_053178	ENSMUSG00000032281	Acsbg1	BG1|Bgm|E230019G03Rik|GR-LACS|Lpd|R75185	acyl-CoA synthetase bubblegum family member 1	protein-coding	0.005000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-1184	chr18	34624017	34624217	+	0.95838	NA	promoter-TSS (NM_009004)	promoter-TSS (NM_009004)	-507	NM_001166407	19348	Mm.258846	NM_009004	ENSMUSG00000003779	Kif20a	AA415432|Rab6kifl	kinesin family member 20A	protein-coding	0.075000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-1859	chr4	139380456	139380656	+	0.95838	NA	promoter-TSS (NM_001160319)	promoter-TSS (NM_001160319)	-103	NM_001160319	69116	Mm.271956	NM_001160319	ENSMUSG00000066036	Ubr4	1810009A16Rik|A930005E13Rik|D930005K06Rik|Gm1032|Gm1666|N28143|RBAF600|Zubr1|mKIAA0462|p600	ubiquitin protein ligase E3 component n-recognin 4	protein-coding	0.105000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-2057	chr6	33455271	33455471	+	0.95838	NA	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	206243	NM_001347089	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.000000	0.323383		13(TTTGCATATTCATG,+,0.00),13(TTTGCATATTCATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1234	chr18	75005703	75005903	+	0.95838	NA	promoter-TSS (NM_001358304)	promoter-TSS (NM_001358304)	-36	NM_001358305	407819	Mm.29866	NM_001001181	ENSMUSG00000036299	BC031181	-	cDNA sequence BC031181	protein-coding	0.080000	0.641791			
merged_common-192	chr12	29954564	29954764	+	0.93223	NA	intron (NM_181395, intron 1 of 22)	intron (NM_181395, intron 1 of 22)	16628	NM_181395	69675	Mm.251774	NM_181395	ENSMUSG00000020674	Pxdn	2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230	peroxidasin	protein-coding	0.005000	0.422886			
merged_common-456	chr2	25180619	25180819	+	0.91393	NA	promoter-TSS (NM_025980)	promoter-TSS (NM_025980)	-39	NM_025980	67122	Mm.46539	NM_025980	ENSMUSG00000078202	Nrarp	2700054M22Rik	Notch-regulated ankyrin repeat protein	protein-coding	0.095000	0.582090			-18(CTATTGTTATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2082	chr6	51469933	51470133	+	0.90281	NA	promoter-TSS (NM_016806)	promoter-TSS (NM_016806)	-139	NR_104468	53379	Mm.155896	NM_016806	ENSMUSG00000004980	Hnrnpa2b1	9130414A06Rik|Hnrpa2|Hnrpa2b1|hnrnp-A	heterogeneous nuclear ribonucleoprotein A2/B1	protein-coding	0.110000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-628	chr13	6886071	6886271	+	0.90281	NA	Intergenic	Intergenic	-237400	NM_001291071	56421	Mm.273874	NM_019703	ENSMUSG00000021196	Pfkp	1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P	phosphofructokinase, platelet	protein-coding	0.000000	0.373134			
merged_common-29	chr1	84086517	84086717	+	0.90281	NA	intron (NM_001003948, intron 2 of 2)	intron (NM_001003948, intron 2 of 2)	132344	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.005000	0.348259			-48(ATTAGAATAAAAAGAC,-,0.00),-21(ATTAACATCCCAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1711	chr3	155723861	155724061	+	0.90281	NA	Intergenic	Intergenic	-252393	NR_040553	329780	Mm.119000	NR_040553	ENSMUSG00000104553	9330178D15Rik	9330178D15	RIKEN cDNA 9330178D15 gene	ncRNA	0.010000	0.333333			
merged_common-379	chr17	80261986	80262186	+	0.90281	NA	intron (NM_198942, intron 10 of 22)	RLTR13B4|LTR|ERVK	-28126	NM_194269	378462	Mm.45208	NM_194269	ENSMUSG00000045257	Morn2	Mopt	MORN repeat containing 2	protein-coding	0.005000	0.388060	13(ATTGCATTATTCATG,+,0.00),13(ATTGCATTATTCATG,-,0.00)		
merged_common-220	chr13	5803812	5804012	+	0.90281	NA	Intergenic	Intergenic	54180	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.005000	0.427861			41(GTCTGAATAACAAAGG,-,0.00)
merged_common-397	chr18	31018835	31019035	+	0.90281	NA	intron (NM_009065, intron 4 of 4)	intron (NM_009065, intron 4 of 4)	298193	NM_009065	19762	Mm.5163	NM_009065	ENSMUSG00000057455	Rit2	RIBA|Rin|Roc2	Ras-like without CAAX 2	protein-coding	0.010000	0.378109	28(AATGAATAATGCATA,+,0.00),28(AATGAATAATGCATA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-604	chr12	99308469	99308669	+	0.90281	NA	intron (NM_183186, intron 3 of 5)	intron (NM_183186, intron 3 of 5)	141505	NM_183186	71375	Mm.341972	NM_183186	ENSMUSG00000033713	Foxn3	5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1	forkhead box N3	protein-coding	0.010000	0.398010	-16(AATGCATTATTCAGT,+,0.00),-16(AATGCATTATTCAGT,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-168	chr14	23039275	23039475	+	0.90281	NA	non-coding (NR_033550, exon 4 of 4)	non-coding (NR_033550, exon 4 of 4)	55196	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	0.005000	0.358209			
merged_common-700	chr6	81367811	81368011	+	0.90281	NA	Intergenic	Intergenic	527752	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0.010000	0.422886			
merged_common-427	chr19	29383328	29383528	+	0.90281	NA	intron (NM_021893, intron 5 of 6)	intron (NM_021893, intron 5 of 6)	15990	NM_021893	60533	Mm.245363	NM_021893	ENSMUSG00000016496	Cd274	A530045L16Rik|B7h1|Pdcd1l1|Pdcd1lg1|Pdl1	CD274 antigen	protein-coding	0.000000	0.313433			
merged_common-811	chr8	114439461	114439661	+	0.90281	NA	promoter-TSS (NM_019573)	promoter-TSS (NM_019573)	-91	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.065000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-872	chr15	48957062	48957262	+	0.90281	NA	Intergenic	Intergenic	-165173	NM_001081391	239420	Mm.309363	NM_001081391	ENSMUSG00000022311	Csmd3	4930500N14Rik|mKIAA1894	CUB and Sushi multiple domains 3	protein-coding	0.000000	0.293532			
ePOU_nocontrol_ChIP_peaks_unique-2450	chr8	107293297	107293497	+	0.90281	NA	promoter-TSS (NM_001286260)	promoter-TSS (NM_001286260)	-73	NM_133957	54446	Mm.390057	NM_018823	ENSMUSG00000003847	Nfat5	AI225870|B130038B15Rik|CAG-8|CAG80|NFATL1|OREBP|TonEBP|mKIAA0827|nfatz	nuclear factor of activated T cells 5	protein-coding	0.125000	0.746269			
merged_common-799	chr8	90870655	90870855	+	0.90281	NA	intron (NM_177224, intron 2 of 39)	intron (NM_177224, intron 2 of 39)	41920	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.020000	0.587065			
ePOU_nocontrol_ChIP_peaks_unique-2380	chr8	47990476	47990676	+	0.90281	NA	promoter-TSS (NM_133791)	promoter-TSS (NM_133791)	-32	NM_133791	52357	Mm.235074	NM_133791	ENSMUSG00000031563	Wwc2	5330431C14Rik|AU022508|C85457|D8Ertd594e	WW, C2 and coiled-coil domain containing 2	protein-coding	0.135000	0.731343			-22(ATTTGCATGCGATTAG,-,0.00)
merged_common-853	chrUn_JH584304	5674	5874	+	0.90281	NA	Intergenic	Intergenic	53915	NR_003518	66776	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.010000	0.532338			
ePOU_nocontrol_ChIP_peaks_unique-1165	chr18	19421122	19421322	+	0.90281	NA	Intergenic	L1_Mur2|LINE|L1	580875	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0.005000	0.343284			31(CCTTTGTTATGTATAT,+,0.00)
merged_common-507	chr2	154613307	154613507	+	0.90281	NA	promoter-TSS (NM_199304)	promoter-TSS (NM_199304)	39	NM_199304	228807	Mm.103555	NM_199304	ENSMUSG00000059842	Zfp341	Znf341	zinc finger protein 341	protein-coding	0.155000	0.786070			
ePOU_nocontrol_ChIP_peaks_unique-626	chr13	5583811	5584011	+	0.90281	NA	Intergenic	RLTR13B1|LTR|ERVK	274181	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.015000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-1205	chr18	53921349	53921549	+	0.90281	NA	intron (NM_152809, intron 6 of 12)	intron (NM_152809, intron 6 of 12)	59336	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.010000	0.313433			-16(ATTTAAAACACAATTG,-,0.00)
merged_common-404	chr18	43343148	43343348	+	0.90281	NA	intron (NM_009468, intron 7 of 13)	intron (NM_009468, intron 7 of 13)	30024	NM_001136086	22240	Mm.8180	NM_009468	ENSMUSG00000024501	Dpysl3	CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1	dihydropyrimidinase-like 3	protein-coding	0.005000	0.467662			46(CCATTCCTTTTCATAT,+,0.00)
merged_common-115	chr10	94453753	94453953	+	0.90281	NA	intron (NM_001359762, intron 2 of 4)	MTB_Mm-int|LTR|ERVL-MaLR	-61004	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.000000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-1635	chr3	94838274	94838474	+	0.90281	NA	intron (NM_001368812, intron 1 of 16)	intron (NM_001368812, intron 1 of 16)	937	NM_001368812	229584	Mm.274787	NM_172683	ENSMUSG00000038902	Pogz	9530006B08Rik	pogo transposable element with ZNF domain	protein-coding	0.045000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-524	chr12	34220187	34220387	+	0.90281	NA	intron (NM_001271386, intron 21 of 27)	intron (NM_001271386, intron 21 of 27)	262616	NM_011658	22160	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	0.005000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-1034	chr16	92680127	92680327	+	0.90281	NA	intron (NM_001111023, intron 2 of 5)	intron (NM_001111023, intron 2 of 5)	17102	NM_001111023	12394	Mm.4081	NM_009821	ENSMUSG00000022952	Runx1	AML1|CBF-alpha-2|Cbfa2|Pebp2a2|Pebpa2b	runt related transcription factor 1	protein-coding	0.025000	0.432836	-1(CATGTATGATTCATA,+,0.00)		
merged_common-842	chr9	85264103	85264303	+	0.90281	NA	Intergenic	Intergenic	62921	NM_001160378	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Tent5a	BAP014|D930050G01Rik|Fam46a	terminal nucleotidyltransferase 5A	protein-coding	0.005000	0.378109			
merged_common-786	chr8	57580097	57580297	+	0.90281	NA	intron (NM_001167981, intron 2 of 11)	intron (NM_001167981, intron 2 of 11)	68354	NM_001363445	97165	Mm.276881	NM_008252	ENSMUSG00000054717	Hmgb2	C80539|HMG-2|Hmg2	high mobility group box 2	protein-coding	0.015000	0.328358			-20(GATTTTTTTTTTAAAT,+,0.00)
merged_common-132	chr11	19981043	19981243	+	0.90281	NA	intron (NM_033523, intron 1 of 5)	intron (NM_033523, intron 1 of 5)	56701	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related EVH1 domain containing 2	protein-coding	0.005000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-1698	chr3	136091499	136091699	+	0.90281	NA	intron (NM_001033350, intron 10 of 16)	intron (NM_001033350, intron 10 of 16)	234467	NM_001310749	242248	Mm.30832	NM_001033350	ENSMUSG00000037922	Bank1	A530094C12Rik|AI451642|AVIEF|BANK	B cell scaffold protein with ankyrin repeats 1	protein-coding	0.000000	0.278607	-24(TATGAATAATGCATT,+,0.00),-24(TATGAATAATGCATT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1625	chr3	87944907	87945107	+	0.90281	NA	Intergenic	Intergenic	-3686	NM_007759	12904	Mm.4757	NM_007759	ENSMUSG00000004885	Crabp2	AI893628|Crabp-2|CrabpII	cellular retinoic acid binding protein II	protein-coding	0.010000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-1120	chr17	63176477	63176677	+	0.90281	NA	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	136396	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.000000	0.457711			39(ATTTGCATCACAATGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-617	chr12	112929758	112929958	+	0.90281	NA	promoter-TSS (NM_010588)	promoter-TSS (NM_010588)	-363	NM_010588	16450	Mm.186146	NM_010588	ENSMUSG00000002799	Jag2	D12Ggc2e|Serh|mJagged2-1|sm	jagged 2	protein-coding	0.120000	0.721393		-8(CCTGCATATGCATG,+,0.00),-8(CCTGCATATGCATG,-,0.00)	
merged_common-368	chr17	40923732	40923932	+	0.88757	NA	intron (NM_031863, intron 8 of 8)	intron (NM_031863, intron 8 of 8)	-9482	NM_001145060	435528	Mm.359622	NM_001145060	ENSMUSG00000091043	Glyatl3	EG435528|Gm5683	glycine-N-acyltransferase-like 3	protein-coding	0.005000	0.348259			-25(ATTTACATGACAATAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-661	chr13	44751738	44751938	+	0.88757	NA	intron (NM_021878, intron 2 of 18)	intron (NM_021878, intron 2 of 18)	20567	NM_001360281	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.000000	0.398010			
merged_common-616	chr4	136981553	136981753	+	0.85970	NA	3' UTR (NM_198248, exon 19 of 19)	3' UTR (NM_198248, exon 19 of 19)	-24837	NM_007939	13842	Mm.1390	NM_007939	ENSMUSG00000028661	Epha8	AW047546|Eek|Hek3|mKIAA1459	Eph receptor A8	protein-coding	0.020000	0.562189			
merged_common-714	chr6	113420342	113420542	+	0.85970	NA	Intergenic	Intergenic	-1094	NM_001346511	101122	Mm.31204	NM_001033204	ENSMUSG00000051169	Rpusd3	AI527266	RNA pseudouridylate synthase domain containing 3	protein-coding	0.015000	0.303483			
merged_common-373	chr17	66104133	66104333	+	0.85970	NA	Intergenic	Intergenic	-2674	NM_028388	72900	Mm.2206	NM_028388	ENSMUSG00000024099	Ndufv2	2900010C23Rik	NADH:ubiquinone oxidoreductase core subunit V2	protein-coding	0.025000	0.407960			3(TTTGTATAATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-343	chr11	6476229	6476429	+	0.85970	NA	promoter-TSS (NM_011221)	promoter-TSS (NM_011221)	-253	NM_011221	19291	Mm.296150	NM_011221	ENSMUSG00000094483	Purb	2310015K15Rik|AA114818|Cager-2|D11Bwg0414e	purine rich element binding protein B	protein-coding	0.030000	0.512438	35(CATGAATTATTCAAC,+,0.00),35(CATGAATTATTCAAC,-,0.00)		
merged_common-850	chr9	123929255	123929455	+	0.85970	NA	Intergenic	Intergenic	39337	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.035000	0.442786			
merged_common-493	chr2	115042960	115043160	+	0.85970	NA	Intergenic	Intergenic	301220	NR_040516	78193	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA	0.000000	0.298507			
merged_common-380	chr17	80762759	80762959	+	0.85970	NA	Intergenic	Intergenic	-34834	NM_001290345	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.005000	0.368159	-71(GCTGAATAATTCATG,+,0.00),-71(GCTGAATAATTCATG,-,0.00)		
merged_common-541	chr3	81996090	81996290	+	0.85970	NA	promoter-TSS (NM_021370)	promoter-TSS (NM_021370)	-732	NM_021370	58170	Mm.88839	NM_021370	ENSMUSG00000028008	Asic5	Accn5|Blinac|Inac	acid-sensing (proton-gated) ion channel family member 5	protein-coding	0.005000	0.368159		52(TATACATATGGATG,+,0.00),52(TATACATATGGATG,-,0.00)	-23(ATTACCATGACAAAGG,-,0.00)
merged_common-729	chr7	44496147	44496347	+	0.85970	NA	promoter-TSS (NM_001357650)	promoter-TSS (NM_001357650)	171	NM_197991	69683	Mm.294759	NM_197991	ENSMUSG00000008140	Emc10	2310044H10Rik|5430410O10Rik|Inm02|Mirta22	ER membrane protein complex subunit 10	protein-coding	0.080000	0.661692		-61(CATGAATATTCATG,+,0.00),-61(CATGAATATTCATG,-,0.00)	
merged_common-524	chr3	38912652	38912852	+	0.85051	NA	intron (NM_183221, intron 1 of 16)	intron (NM_183221, intron 1 of 16)	25812	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.000000	0.412935	-8(CATGCATTATTTATG,+,0.00),-8(CATGCATTATTTATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-335	chr11	3199423	3199623	+	0.82448	NA	intron (NM_001363224, intron 1 of 28)	intron (NM_001363224, intron 1 of 28)	1129	NM_001363223	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.000000	0.447761			-34(ATGTAAATAAAAAAAA,-,0.00)
merged_common-556	chr3	110088584	110088784	+	0.82448	NA	intron (NM_030699, intron 2 of 7)	B3|SINE|B2	54788	NM_001163350	80883	Mm.39262	NM_030699	ENSMUSG00000059857	Ntng1	A930010C08Rik|AI853992|Lmnt1	netrin G1	protein-coding	0.005000	0.407960			-59(ATTAGCAACACTAAGA,-,0.00),65(ATTTTCAAGTCAAAAG,-,0.00)
merged_common-252	chr14	7826572	7826772	+	0.82448	NA	intron (NM_001081427, intron 1 of 45)	intron (NM_001081427, intron 1 of 45)	8715	NM_001081427	286940	Mm.489652	NM_134080	ENSMUSG00000025278	Flnb	AL024016|Fln-b	filamin, beta	protein-coding	0.015000	0.457711			-36(CCTTTCTCATGGAGAT,+,0.00)
merged_common-761	chr7	128461598	128461798	+	0.79470	NA	promoter-TSS (NM_009383)	promoter-TSS (NM_009383)	-25	NM_001347640	21843	Mm.242072	NM_009383	ENSMUSG00000030846	Tial1	5330433G13Rik|AL033329|TIAR|mTIAR	Tia1 cytotoxic granule-associated RNA binding protein-like 1	protein-coding	0.090000	0.597015			
merged_common-57	chr1	157645956	157646156	+	0.79470	NA	Intergenic	L1MB8|LINE|L1	119886	NM_001159986	89867	Mm.87114	NM_033354	ENSMUSG00000026589	Sec16b	Lztr2|Rgpr|Rgpr-p117	SEC16 homolog B (S. cerevisiae)	protein-coding	0.000000	0.378109			10(TTATTCTTATGCATAT,+,0.00)
merged_common-534	chr3	57575828	57576028	+	0.72580	NA	promoter-TSS (NM_001168281)	promoter-TSS (NM_001168281)	-18	NM_001168281	97064	Mm.405029	NM_133784	ENSMUSG00000027803	Wwtr1	2310058J06Rik|2610021I22Rik|C78399|Taz	WW domain containing transcription regulator 1	protein-coding	0.085000	0.711443	-61(GTTGAATTATGCATG,+,0.00),-61(GTTGAATTATGCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2490	chr9	20385066	20385266	+	0.72306	NA	promoter-TSS (NM_001004190)	promoter-TSS (NM_001004190)	-8	NM_001004190	434377	Mm.379669	NM_001004190	ENSMUSG00000045519	Zfp560	2310030G09Rik|Znf560	zinc finger protein 560	protein-coding	0.100000	0.686567			
merged_common-673	chr5	140249671	140249871	+	0.72306	NA	intron (NM_001359025, intron 10 of 17)	intron (NM_001359025, intron 10 of 17)	71781	NM_010752	17120	Mm.27250	NM_010752	ENSMUSG00000029554	Mad1l1	AI173502|AW550425|Mad1	MAD1 mitotic arrest deficient 1-like 1	protein-coding	0.015000	0.398010		-30(CATGAATATGTAAA,+,0.00)	1(ATATGCAAGACATACA,-,0.00)
merged_common-490	chr2	109860935	109861135	+	0.72306	NA	Intergenic	Kanga2_a|DNA|TcMar-Tc2	-29843	NM_011699	22343	Mm.235300	NM_011699	ENSMUSG00000027162	Lin7c	9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3	lin-7 homolog C (C. elegans)	protein-coding	0.015000	0.462687			
Oct4_nocontrol_ChIP_peaks_unique-155	chr13	86013355	86013555	+	0.72306	NA	Intergenic	Intergenic	33340	NM_007749	12867	Mm.378898	NM_007749	ENSMUSG00000017778	Cox7c	COXVIIc|Cox7c1	cytochrome c oxidase subunit 7C	protein-coding	0.020000	0.373134			
merged_common-166	chr11	94327827	94328027	+	0.72306	NA	promoter-TSS (NM_146024)	promoter-TSS (NM_146024)	-74	NM_027799	71452	Mm.141054	NM_027799	ENSMUSG00000020864	Ankrd40	1110011C06Rik|5530600A18Rik|Gcap15	ankyrin repeat domain 40	protein-coding	0.070000	0.587065			
ePOU_nocontrol_ChIP_peaks_unique-359	chr11	30933824	30934024	+	0.72306	NA	intron (NM_025745, intron 13 of 13)	L1ME2|LINE|L1	20207	NM_025745	66753	Mm.294641	NM_025745	ENSMUSG00000020311	Erlec1	4933407N01Rik	endoplasmic reticulum lectin 1	protein-coding	0.000000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-2433	chr8	90908338	90908538	+	0.72306	NA	intron (NM_177224, intron 2 of 39)	CpG	-23811	NM_001310530	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.110000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-1420	chr2	92375164	92375364	+	0.72306	NA	promoter-TSS (NM_145122)	promoter-TSS (NM_145122)	25	NM_145122	18633	Mm.202782	NM_145122	ENSMUSG00000027222	Pex16	-	peroxisomal biogenesis factor 16	protein-coding	0.035000	0.567164			
merged_common-762	chr7	129920724	129920924	+	0.72306	NA	Intergenic	Intergenic	-41341	NR_046077	100043150	Mm.334264	NR_046077	ENSMUSG00000108504	Gm4265	-	predicted gene 4265	ncRNA	0.000000	0.348259	32(AATGAATAATGCAAA,+,0.00),32(AATGAATAATGCAAA,-,0.00)		-55(TTTCTTTTATTTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-45	chr1	60851145	60851345	+	0.72306	NA	Intergenic	Intergenic	-57780	NM_009843	12477	Mm.390	NM_009843	ENSMUSG00000026011	Ctla4	Cd152|Ctla-4|Ly-56	cytotoxic T-lymphocyte-associated protein 4	protein-coding	0.005000	0.452736			-66(CTTTCAATAATAATGC,-,0.00)
merged_common-468	chr2	51753375	51753575	+	0.72306	NA	Intergenic	Intergenic	-21466	NR_040639	433426	Mm.244381	NR_040639	ENSMUSG00000085014	Gm13490	-	predicted gene 13490	ncRNA	0.025000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-2570	chr9	88482648	88482848	+	0.72306	NA	promoter-TSS (NM_001311113)	promoter-TSS (NM_001311113)	-351	NM_019796	56403	Mm.260545	NM_019666	ENSMUSG00000032423	Syncrip	2610109K23Rik|4632417O19Rik|GRY-RBP|Nsap1|Nsap1l|hnRNP Q|pp68	synaptotagmin binding, cytoplasmic RNA interacting protein	protein-coding	0.120000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-538	chr12	44573074	44573274	+	0.72306	NA	intron (NM_176930, intron 23 of 30)	intron (NM_176930, intron 23 of 30)	244289	NM_176930	319504	Mm.208439	NM_176930	ENSMUSG00000020598	Nrcam	Bravo|C030017F07Rik|C130076O07Rik|mKIAA0343	neuronal cell adhesion molecule	protein-coding	0.000000	0.378109			
Oct4_nocontrol_ChIP_peaks_unique-76	chr11	26103911	26104111	+	0.72306	NA	intron (NR_027973, intron 1 of 5)	intron (NR_027973, intron 1 of 5)	-98229	NR_105791	102466154		NR_105791	ENSMUSG00000099015	Mir6372	Gm27358|mmu-mir-6372	microRNA 6372	ncRNA	0.025000	0.388060		-77(AATGCAAATGTATT,+,0.00)	-84(TTATTGTAATGCAAAT,+,0.00)
merged_common-394	chr18	24394305	24394505	+	0.72306	NA	Intergenic	MER34A|LTR|ERV1	34765	NR_029573	387182		NR_029573	ENSMUSG00000065532	Mir187	Mirn187|mir-187|mmu-mir-187	microRNA 187	ncRNA	0.005000	0.393035			-91(GATTTGTCATGCAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2024	chr5	148995966	148996166	+	0.72306	NA	promoter-TSS (NR_102384)	promoter-TSS (NR_102384)	-851	NR_102384	319982	Mm.33303	NR_102383	ENSMUSG00000106951	5930430L01Rik	-	RIKEN cDNA 5930430L01 gene	ncRNA	0.010000	0.368159		18(CATGCATATGAATG,+,0.00),18(CATGCATATGAATG,-,0.00)	23(ATATGAATGAAAATAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1366	chr2	35108276	35108476	+	0.72306	NA	Intergenic	Intergenic	-1116	NM_012018	26920	Mm.231332	NM_012018	ENSMUSG00000057110	Cntrl	6720467O09Rik|AA968343|Cep1|Cep110|IB3/5|Ma2a8|b2b1468.1Clo|b2b1468Clo	centriolin	protein-coding	0.020000	0.427861	-24(TTTGCATAATTCATA,+,0.00),-24(TTTGCATAATTCATA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1997	chr5	125444590	125444790	+	0.72306	NA	intron (NM_029752, intron 1 of 2)	intron (NM_029752, intron 1 of 2)	3122	NM_029752	76809	Mm.290720	NM_029752	ENSMUSG00000037905	Bri3bp	2410150I18Rik|AI841257|AW742481	Bri3 binding protein	protein-coding	0.010000	0.407960			-58(CCTTTCATATGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-840	chr15	9177905	9178105	+	0.72306	NA	intron (NM_177178, intron 12 of 17)	(TATATG)n|Simple_repeat|Simple_repeat	-22580	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.000000	0.288557		-3(CATGTATATGGATA,+,0.00),3(TATGGATATGCATG,+,0.00),3(TATGGATATGCATG,-,0.00),13(CATGTATATGCATG,+,0.00),13(CATGTATATGCATG,-,0.00),23(CATGTATATGGATA,+,0.00),29(TATGGATATGCATA,+,0.00),29(TATGGATATGCATA,-,0.00)	-10(GCATTAGCATGTATAT,+,0.00)
merged_common-577	chr4	30933300	30933500	+	0.72306	NA	Intergenic	Intergenic	268804	NR_040655	75332	Mm.108636	NR_040655		4930556G01Rik	-	RIKEN cDNA 4930556G01 gene	ncRNA	0.005000	0.313433		-96(TATGCATATGTATA,+,0.00),-96(TATGCATATGTATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2306	chr7	126799330	126799530	+	0.72306	NA	promoter-TSS (NM_007438)	promoter-TSS (NM_007438)	-176	NM_007438	11674	Mm.275831	NM_007438	ENSMUSG00000030695	Aldoa	Aldo-1|Aldo1	aldolase A, fructose-bisphosphate	protein-coding	0.075000	0.681592			
merged_common-769	chr8	8286028	8286228	+	0.72306	NA	Intergenic	Intergenic	375114	NM_010111	13642	Mm.209813	NM_010111	ENSMUSG00000001300	Efnb2	ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1	ephrin B2	protein-coding	0.015000	0.378109			
merged_common-657	chr5	111205101	111205301	+	0.72306	NA	intron (NM_001267622, intron 6 of 22)	intron (NM_001267622, intron 6 of 22)	-125496	NM_001301666	56305	Mm.200516	NM_019640	ENSMUSG00000050017	Pitpnb	PI-TP-beta	phosphatidylinositol transfer protein, beta	protein-coding	0.000000	0.402985			
merged_common-149	chr11	58103950	58104150	+	0.72306	NA	promoter-TSS (NM_001356477)	promoter-TSS (NM_001356477)	80	NM_026949	69125	Mm.28910	NM_026949	ENSMUSG00000020515	Cnot8	1500015I04Rik|1810022F04Rik|AA536816|AU015770|AU043059	CCR4-NOT transcription complex, subunit 8	protein-coding	0.120000	0.701493			
Oct4_nocontrol_ChIP_peaks_unique-104	chr11	112038384	112038584	+	0.72306	NA	Intergenic	Intergenic	672872	NR_024085	217294	Mm.297761	NM_146031	ENSMUSG00000041674	BC006965	-	cDNA sequence BC006965	ncRNA	0.005000	0.333333			-53(AAATGCATGACAATCA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-209	chr10	24765974	24766174	+	0.72306	NA	Intergenic	Intergenic	-53915	NM_001308329	18605	Mm.27254	NM_008813	ENSMUSG00000037370	Enpp1	4833416E15Rik|AI428932|C76301|CD203c|E-NPP 1|E-NPP1|Ly-41|M6S1|NPP1|Npps|PC-1|Pca|Pca-1|Pdnp1|ttw|twy	ectonucleotide pyrophosphatase/phosphodiesterase 1	protein-coding	0.000000	0.323383			55(GTTTGAATGGCAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-169	chr1	180725922	180726122	+	0.72306	NA	promoter-TSS (NM_133225)	promoter-TSS (NM_133225)	-21	NM_133225	170760	Mm.272981	NM_133225	ENSMUSG00000026499	Acbd3	60kDa|8430407O11Rik|D1Ertd10e|GCP60|GOLPH1|Gocap1|Pap7	acyl-Coenzyme A binding domain containing 3	protein-coding	0.135000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-8	chr1	17540377	17540577	+	0.72306	NA	Intergenic	Intergenic	-61424	NM_053191	94227	Mm.442452	NM_053191	ENSMUSG00000067780	Pi15	P24TI|P25TI|PI-15|SugarCrisp	peptidase inhibitor 15	protein-coding	0.010000	0.417910			-73(ATTTGAAAGACAATAA,-,0.00),32(ATTTGAATGTGAAATG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2097	chr6	66896263	66896463	+	0.72306	NA	promoter-TSS (NM_001177560)	promoter-TSS (NM_001177560)	-34	NM_001177557	14701	Mm.234342	NM_025278	ENSMUSG00000036402	Gng12	2010305F15Rik|AA536815|AI115529|AI314170|AI842738	guanine nucleotide binding protein (G protein), gamma 12	protein-coding	0.145000	0.786070			
merged_common-568	chr3	149405902	149406102	+	0.72306	NA	Intergenic	Intergenic	131265	NR_040591	381482	Mm.393866	NR_040591		Gm1653	-	predicted gene 1653	ncRNA	0.000000	0.378109			-10(CCATTGCTATGTAATT,+,0.00),24(TTTTGCATCACAATCA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1374	chr2	48943651	48943851	+	0.72306	NA	intron (NM_001355296, intron 1 of 13)	intron (NM_001355296, intron 1 of 13)	5516	NM_011958	26428	Mm.291059	NM_011958	ENSMUSG00000026761	Orc4	Orc4P|Orc4l|mMmORC4	origin recognition complex, subunit 4	protein-coding	0.000000	0.278607			
merged_common-542	chr3	83079661	83079861	+	0.72306	NA	Intergenic	MER45B|DNA|hAT-Tip100	24223	NM_016784	53317	Mm.286349	NM_016784	ENSMUSG00000027998	Plrg1	AA958940|C80566|Tango4	pleiotropic regulator 1	protein-coding	0.005000	0.348259			44(TTTTAAATAAAAATAA,-,0.00)
merged_common-506	chr2	146062657	146062857	+	0.72306	NA	intron (NM_001369121, intron 17 of 26)	intron (NM_001369121, intron 17 of 26)	127973	NM_175280	78774	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	0.020000	0.427861			
merged_common-372	chr17	65713532	65713732	+	0.72306	NA	intron (NM_133685, intron 3 of 6)	intron (NM_133685, intron 3 of 6)	59120	NM_133685	106572	Mm.29274	NM_133685	ENSMUSG00000056515	Rab31	1700093E07Rik|AI415285|Rab22B	RAB31, member RAS oncogene family	protein-coding	0.015000	0.442786		27(TATACATATGCATA,+,0.00),27(TATACATATGCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-211	chr10	25191571	25191771	+	0.72306	NA	intron (NM_018747, intron 7 of 7)	intron (NM_018747, intron 7 of 7)	8499	NM_001347460	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.000000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-2391	chr8	64196848	64197048	+	0.72306	NA	intron (NM_009390, intron 1 of 20)	intron (NM_009390, intron 1 of 20)	9060	NM_009390	21892	Mm.418367	NM_009390	ENSMUSG00000053626	Tll1	Tll|Tll-1|b2b2476Clo	tolloid-like	protein-coding	0.000000	0.303483			
merged_common-257	chr14	45486591	45486791	+	0.72306	NA	intron (NM_001360525, intron 3 of 15)	L1ME1|LINE|L1	43374	NM_146054	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family member 2	protein-coding	0.020000	0.338308			
Oct4_nocontrol_ChIP_peaks_unique-128	chr12	100199376	100199576	+	0.72306	NA	promoter-TSS (NM_001313934)	promoter-TSS (NM_001313934)	41	NM_009790	12313	Mm.285993	NM_009790	ENSMUSG00000001175	Calm1	AI256814|AI327027|AI461935|AL024000|CaM|Calm|Cam1	calmodulin 1	protein-coding	0.160000	0.721393			
merged_common-266	chr14	67242270	67242470	+	0.72306	NA	intron (NM_010095, intron 6 of 16)	intron (NM_010095, intron 6 of 16)	7726	NM_001360202	13592	Mm.319947	NM_010095	ENSMUSG00000022053	Ebf2	D14Ggc1e|EBF-2|Mmot1|O/E-3|OE-3	early B cell factor 2	protein-coding	0.005000	0.383085			-82(CTTTTGTTATGCAATC,+,0.00)
merged_common-2	chr1	6315789	6315989	+	0.72306	NA	Intergenic	L1_Mus2|LINE|L1	-43442	NM_001195732	620393	Mm.388992	NM_001195732	ENSMUSG00000087247	Alkal1	EG620393|Fam150a	ALK and LTK ligand 1	protein-coding	0.005000	0.353234			
Oct4_nocontrol_ChIP_peaks_unique-462	chr7	4154436	4154636	+	0.72306	NA	intron (NM_021454, intron 2 of 2)	intron (NM_021454, intron 2 of 2)	-4664	NM_175529	243813	Mm.347643	NM_175529	ENSMUSG00000043432	Leng9	9530024C23Rik|F630035L11Rik	leukocyte receptor cluster (LRC) member 9	protein-coding	0.010000	0.432836			-21(AACTGCATGAGAAAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1868	chr4	149542090	149542290	+	0.72306	NA	intron (NM_023465, intron 2 of 4)	intron (NM_023465, intron 2 of 4)	-2927	NM_001141930	67087	Mm.299735	NM_023465	ENSMUSG00000028988	Ctnnbip1	1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat	catenin beta interacting protein 1	protein-coding	0.015000	0.447761			
merged_common-648	chr5	81179652	81179852	+	0.72306	NA	intron (NM_001359828, intron 2 of 26)	intron (NM_001359828, intron 2 of 26)	158159	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.005000	0.383085			28(CCTTTGTCATGCAATA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1143	chr17	80468791	80468991	+	0.72306	NA	intron (NM_009231, intron 1 of 21)	intron (NM_009231, intron 1 of 21)	11562	NM_009231	20662	Mm.60975	NM_009231	ENSMUSG00000024241	Sos1	4430401P03Rik|9630010N06|AI449023	SOS Ras/Rac guanine nucleotide exchange factor 1	protein-coding	0.010000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-1460	chr2	122515501	122515701	+	0.72306	NA	intron (NM_001085518, intron 6 of 17)	MLTR25A|LTR|ERVK	30660	NM_001085518	381417	Mm.482295	NM_001085518	ENSMUSG00000079071	Gm14085	-	predicted gene 14085	protein-coding	0.005000	0.358209			57(CAATTGATATGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2549	chr9	69467554	69467754	+	0.72306	NA	intron (NM_007585, intron 3 of 12)	intron (NM_007585, intron 3 of 12)	10710	NR_037296	100526560		NR_037296	ENSMUSG00000093042	Mir3109	mir-3109|mmu-mir-3109	microRNA 3109	ncRNA	0.000000	0.417910			
merged_common-843	chr9	86899824	86900024	+	0.72306	NA	Intergenic	Intergenic	-19216	NM_001357770	20616	Mm.281651	NM_013669	ENSMUSG00000033419	Snap91	91kDa|AP180|F1-20|mKIAA0656	synaptosomal-associated protein 91	protein-coding	0.010000	0.383085			-52(ATTCTGTTATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1783	chr4	82859333	82859533	+	0.72306	NA	intron (NR_149737, intron 1 of 7)	CpG	240	NM_026647	68268	Mm.32047	NM_026647	ENSMUSG00000028403	Zdhhc21	9130404H11Rik|AL024349|D130004H04Rik|dep	zinc finger, DHHC domain containing 21	protein-coding	0.120000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-1162	chr18	10290377	10290577	+	0.72306	NA	Intergenic	Intergenic	-34702	NM_001083628	381157	Mm.261535	NM_001083628	ENSMUSG00000042942	Greb1l	mKIAA4095	growth regulation by estrogen in breast cancer-like	protein-coding	0.015000	0.368159			
merged_common-250	chr13	112770681	112770881	+	0.72306	NA	Intergenic	Intergenic	-29996	NM_008903	19012	Mm.291029	NM_008247	ENSMUSG00000021759	Plpp1	Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP	phospholipid phosphatase 1	protein-coding	0.010000	0.442786			-38(CTTTTGTTATGTATTT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2507	chr9	37560854	37561054	+	0.72306	NA	Intergenic	B3|SINE|B2	-8209	NM_022029	64011	Mm.335065	NM_022029	ENSMUSG00000053310	Nrgn	0710001B06Rik|AI838505|NG|NG/RC3|Pss1|R75334|RC3	neurogranin	protein-coding	0.010000	0.412935			
merged_common-240	chr13	78427780	78427980	+	0.72306	NA	Intergenic	Intergenic	-229007	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.025000	0.537313			26(ATTTGCATGATAATCA,-,0.00)
merged_common-114	chr10	90709495	90709695	+	0.72306	NA	intron (NM_001359242, intron 3 of 10)	intron (NM_001359242, intron 3 of 10)	-120059	NM_001347054	77531	Mm.440605	NM_181398	ENSMUSG00000058589	Anks1b	AIDA-1|AIDA-1b|C030032C09Rik|E530015N03Rik|EB-1|Gm10937|Gm1555	ankyrin repeat and sterile alpha motif domain containing 1B	protein-coding	0.005000	0.383085			
merged_common-97	chr10	39023486	39023686	+	0.71788	NA	intron (NM_010681, intron 4 of 37)	intron (NM_010681, intron 4 of 37)	58071	NM_010681	16775	Mm.258065	NM_010681	ENSMUSG00000019846	Lama4	-	laminin, alpha 4	protein-coding	0.005000	0.393035	-47(GATGAATAATTTATG,+,0.00),-47(GATGAATAATTTATG,-,0.00)		20(ATATGAATAACAAAGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-256	chr10	69099785	69099985	+	0.71788	NA	Intergenic	Intergenic	-65997	NR_155866	102635787	Mm.412577	NR_155866		Gm33035	-	predicted gene, 33035	ncRNA	0.025000	0.452736			15(CCTTTGTCATGCAAAC,+,0.00)
merged_common-599	chr4	91448007	91448207	+	0.71788	NA	Intergenic	Intergenic	-48123	NM_207685	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV like RNA binding protein 1	protein-coding	0.005000	0.407960			-63(TCTTTGTTATGTAAAT,+,0.00),17(TTTTGCATTACAAAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1589	chr3	63964676	63964876	+	0.71788	NA	promoter-TSS (NM_001272035)	promoter-TSS (NM_001272035)	-43	NM_001331067	11416	Mm.135619	NM_015728	ENSMUSG00000027822	Slc33a1	AI315656|AI788741|Acatn|D630022N01Rik	solute carrier family 33 (acetyl-CoA transporter), member 1	protein-coding	0.120000	0.592040			
merged_common-618	chr4	143426562	143426762	+	0.71788	NA	Intergenic	Intergenic	14236	NM_001355724	242736	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	0.010000	0.407960			0(ATATGCATGAGAATGG,-,0.00)
merged_common-352	chr17	12502616	12502816	+	0.71788	NA	intron (NM_011395, intron 1 of 10)	L1M5|LINE|L1	4988	NM_011395	20519	Mm.99252	NM_011395	ENSMUSG00000023828	Slc22a3	EMT|Oct3|Orct3|Slca22a3	solute carrier family 22 (organic cation transporter), member 3	protein-coding	0.010000	0.323383			
merged_common-322	chr16	22439674	22439874	+	0.71788	NA	promoter-TSS (NM_023794)	promoter-TSS (NM_023794)	-204	NM_023794	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.070000	0.616915			
merged_common-423	chr19	8953601	8953801	+	0.71788	NA	promoter-TSS (NM_197993)	promoter-TSS (NM_197993)	-131	NM_197993	70044	Mm.165979	NM_197993	ENSMUSG00000071645	Tut1	2700038E08Rik|PAPD2|Rbm21|TUTase6|Tent1|U6-TUTase|star-PAP	terminal uridylyl transferase 1, U6 snRNA-specific	protein-coding	0.055000	0.472637		-61(AATGAATATTCACG,+,0.00),-61(AATGAATATTCACG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1957	chr5	97016326	97016526	+	0.71788	NA	intron (NM_080708, intron 1 of 15)	intron (NM_080708, intron 1 of 15)	18737	NM_080708	140780	Mm.281490	NM_080708	ENSMUSG00000034663	Bmp2k	4933417M22Rik|AA673486|AV128808|BIKE	BMP2 inducible kinase	protein-coding	0.010000	0.363184			
merged_common-332	chr16	57496668	57496868	+	0.71788	NA	intron (NM_001040397, intron 1 of 4)	intron (NM_001040397, intron 1 of 4)	-52474	NM_001177871	78749	Mm.328360	NM_001040397	ENSMUSG00000043336	Filip1l	4631422O05Rik|Doc1	filamin A interacting protein 1-like	protein-coding	0.025000	0.477612			
merged_common-771	chr8	12004044	12004244	+	0.71788	NA	Intergenic	Intergenic	163623	NM_029326	75528	Mm.440342	NM_029326	ENSMUSG00000031512	Tex29	1700018L24Rik	testis expressed 29	protein-coding	0.010000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-707	chr13	96608787	96608987	+	0.71296	NA	intron (NM_023420, intron 6 of 17)	L1MD|LINE|L1	62049	NM_001360166	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.000000	0.343284			
merged_common-560	chr3	120650054	120650254	+	0.71296	NA	intron (NR_130170, intron 9 of 18)	intron (NR_130170, intron 9 of 18)	236578	NR_130170	320739	Mm.388474	NR_130170		6530403H02Rik	-	RIKEN cDNA 6530403H02 gene	ncRNA	0.005000	0.323383			8(CCATTATTAAGCAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1270	chr19	14091161	14091361	+	0.71296	NA	Intergenic	B3A|SINE|B2	172239	NM_001011850	258151	Mm.377361	NM_001011850	ENSMUSG00000062314	Olfr1505	MOR211-4P	olfactory receptor 1505	protein-coding	0.000000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-709	chr13	96680970	96681170	+	0.71296	NA	Intergenic	Intergenic	-10134	NM_001360165	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.000000	0.303483			
merged_common-547	chr3	93521158	93521358	+	0.71296	NA	intron (NM_016740, intron 1 of 2)	intron (NM_016740, intron 1 of 2)	762	NM_016740	20195	Mm.280038	NM_016740	ENSMUSG00000027907	S100a11	EMAPI|Emap1|S100a14|S100c|cal	S100 calcium binding protein A11	protein-coding	0.010000	0.432836			
merged_common-744	chr7	80246259	80246459	+	0.71296	NA	promoter-TSS (NM_177765)	promoter-TSS (NM_177765)	-17	NM_177765	269954	Mm.276780	NM_177765	ENSMUSG00000045467	Ttll13	1700111A04Rik|4921538O11|BC024578	tubulin tyrosine ligase-like family, member 13	protein-coding	0.100000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-2582	chr9	101251576	101251776	+	0.71296	NA	5' UTR (NM_001161362, exon 1 of 14)	5' UTR (NM_001161362, exon 1 of 14)	156	NM_001161362	235542	Mm.335386	NM_172144	ENSMUSG00000043154	Ppp2r3a	3222402P14Rik|A730042E07|C530025M11Rik	protein phosphatase 2, regulatory subunit B'', alpha	protein-coding	0.140000	0.771144			
ePOU_nocontrol_ChIP_peaks_unique-2101	chr6	71831407	71831607	+	0.71296	NA	exon (NM_001253688, exon 1 of 13)	exon (NM_001253688, exon 1 of 13)	187	NM_001253686	76614	Mm.235123	NM_029673	ENSMUSG00000052337	Immt	1700082C19Rik|D830041H16Rik|HMP|Micos60|P87|P87/89|P89	inner membrane protein, mitochondrial	protein-coding	0.125000	0.686567			
ePOU_nocontrol_ChIP_peaks_unique-1099	chr17	36271306	36271506	+	0.71296	NA	promoter-TSS (NM_001357889)	promoter-TSS (NM_001357889)	25	NM_001357889	79263	Mm.40624	NM_024468	ENSMUSG00000045409	Trim39	1100001D15Rik|E130103K13Rik|RBCC-B30.2|Rnf23|mKIAA4179|tfp	tripartite motif-containing 39	protein-coding	0.145000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-1504	chr2	154426588	154426788	+	0.71296	NA	Intergenic	Intergenic	-9796	NM_172860	12396	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	CBFA2/RUNX1 translocation partner 2	protein-coding	0.060000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-452	chr11	95309733	95309933	+	0.71296	NA	promoter-TSS (NR_155298)	promoter-TSS (NR_155298)	413	NM_001195003	217127	Mm.90213	NM_177619	ENSMUSG00000038909	Kat7	Hbo1|Hboa|Myst2	K(lysine) acetyltransferase 7	protein-coding	0.070000	0.577114			
ePOU_nocontrol_ChIP_peaks_unique-1620	chr3	86873230	86873430	+	0.71296	NA	intron (NM_001357460, intron 2 of 16)	intron (NM_001357460, intron 2 of 16)	47554	NM_001195497	70762	Mm.44490	NM_027539	ENSMUSG00000028078	Dclk2	6330415M09Rik|AU044875|CL2|CLICK2|Click-II|Dcamkl2	doublecortin-like kinase 2	protein-coding	0.015000	0.467662			
merged_common-298	chr15	59983709	59983909	+	0.71296	NA	Intergenic	Intergenic	32809	NM_027668	71088	Mm.425950	NM_027668	ENSMUSG00000071749	4933412E24Rik	-	RIKEN cDNA 4933412E24 gene	protein-coding	0.005000	0.398010			41(ATTATCATAACAAATT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1152	chr17	88099550	88099750	+	0.71296	NA	Intergenic	Intergenic	-25862	NM_001190356	225058	Mm.312053	NM_001190356		Gm4832	EG225058	predicted gene 4832	protein-coding	0.030000	0.383085			-68(TTGTTTTCATGTAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-511	chr12	12254735	12254935	+	0.71296	NA	Intergenic	Intergenic	-7342	NM_001146119	76820	Mm.440802	NM_029758	ENSMUSG00000020589	Fam49a	2410157M17Rik|9630047E15|D12Ertd553e	family with sequence similarity 49, member A	protein-coding	0.000000	0.338308			
ePOU_nocontrol_ChIP_peaks_unique-2238	chr7	79310291	79310491	+	0.71296	NA	intron (NM_018811, intron 3 of 10)	L1M5|LINE|L1	37125	NM_018811	54608	Mm.365490	NM_018811	ENSMUSG00000039202	Abhd2	2210009N18Rik|LABH2|Labh-2	abhydrolase domain containing 2	protein-coding	0.005000	0.412935			13(CATTTGCCATGCAGAG,+,0.00)
merged_common-457	chr2	26147781	26147981	+	0.71296	NA	Intergenic	Intergenic	-7375	NM_001256521	109299	Mm.389259	NM_001256521		Tmem250-ps	AI551216|C330006A16Rik	transmembrane protein 250, pseudogene	protein-coding	0.020000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-1558	chr3	33906684	33906884	+	0.71296	NA	Intergenic	Intergenic	-62474	NM_026222	51938	Mm.275710	NM_026222	ENSMUSG00000027676	Ccdc39	4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo|prh	coiled-coil domain containing 39	protein-coding	0.010000	0.412935			-49(ACAATGTTTTGCAAAT,+,0.00),-4(ATCTGCAGGACAATGG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-232	chr16	66574660	66574860	+	0.71296	NA	Intergenic	Intergenic	-82358	NR_040512	75501	Mm.394300	NR_040512	ENSMUSG00000092599	1700010K23Rik	-	RIKEN cDNA 1700010K23 gene	ncRNA	0.000000	0.313433			-58(CCATTCTTATTCAAAA,+,0.00),-26(GTTTTGTCATGCATTT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-103	chr1	131137294	131137494	+	0.71296	NA	intron (NM_145508, intron 1 of 2)	intron (NM_145508, intron 1 of 2)	840	NM_145508	226419	Mm.39299	NM_145508	ENSMUSG00000016526	Dyrk3	BC006704	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 3	protein-coding	0.015000	0.432836	1(CTTGAATAATGCATT,+,0.00),1(CTTGAATAATGCATT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-966	chr16	20445008	20445208	+	0.71296	NA	Intergenic	Intergenic	-18714	NM_176839	27416	Mm.20845	NM_013790	ENSMUSG00000022822	Abcc5	2900011L11Rik|AI132311|Abcc5a|Abcc5b|Mrp5	ATP-binding cassette, sub-family C (CFTR/MRP), member 5	protein-coding	0.000000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-116	chr1	143060836	143061036	+	0.71296	NA	Intergenic	L1ME3A|LINE|L1	-579761	NM_020025	26878	Mm.285580	NM_020025	ENSMUSG00000033849	B3galt2	-	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2	protein-coding	0.000000	0.363184			83(CATTGCATGAAAATAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-51	chr1	63553481	63553681	+	0.71296	NA	intron (NM_011780, intron 15 of 25)	intron (NM_011780, intron 15 of 25)	-62387	NM_001370842	105243944		NM_001370842	ENSMUSG00000115378	Gm39653	-	predicted gene, 39653	protein-coding	0.000000	0.308458		38(TATGCATAGGCAAG,-,0.00)	68(CCATTGATATGCATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1513	chr2	164823210	164823410	+	0.71296	NA	intron (NM_028028, intron 1 of 1)	intron (NM_028028, intron 1 of 1)	624	NM_028028	71971	Mm.161149	NM_028028	ENSMUSG00000017764	Zswim1	2410003H12Rik|AI850991|BB046916	zinc finger SWIM-type containing 1	protein-coding	0.020000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-802	chr14	75911758	75911958	+	0.71296	NA	intron (NM_026816, intron 6 of 7)	intron (NM_026816, intron 6 of 7)	-43145	NM_026214	67516	Mm.390712	NM_026214	ENSMUSG00000046523	Kctd4	2210017A09Rik|AU017169	potassium channel tetramerisation domain containing 4	protein-coding	0.005000	0.407960			81(TCCTTGGTATGCAAAT,+,0.00)
merged_common-161	chr11	86083743	86083943	+	0.71296	NA	intron (NM_178309, intron 16 of 19)	intron (NM_178309, intron 16 of 19)	-59493	NR_046030	629393	Mm.372867	NR_046030		Gm20759	-	predicted gene, 20759	ncRNA	0.000000	0.328358			-4(TTTTACATAACAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1282	chr19	25230950	25231150	+	0.71296	NA	Intergenic	Intergenic	-5925	NM_181404	107351	Mm.260722	NM_181404	ENSMUSG00000032702	Kank1	A930031B09Rik|AU015049|AW121052|Ankrd15|D330024H06Rik|mKIAA0172	KN motif and ankyrin repeat domains 1	protein-coding	0.000000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-2559	chr9	78623418	78623618	+	0.71296	NA	intron (NM_153098, intron 2 of 32)	intron (NM_153098, intron 2 of 32)	7972	NM_153098	235505	Mm.32955	NM_153098	ENSMUSG00000046186	Cd109	9930012E15Rik|AI480638|GARP	CD109 antigen	protein-coding	0.010000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-486	chr11	116130567	116130767	+	0.71296	NA	exon (NM_178802, exon 1 of 6)	exon (NM_178802, exon 1 of 6)	461	NM_178802	338364	Mm.439976	NM_178802	ENSMUSG00000054517	Trim65	4732463G12Rik	tripartite motif-containing 65	protein-coding	0.150000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-723	chr13	104610567	104610767	+	0.71296	NA	Intergenic	Intergenic	206286	NM_001360094	67285	Mm.235398	NM_026072	ENSMUSG00000021715	Cwc27	3110009E13Rik|NY-CO-10|Sdccag10	CWC27 spliceosome-associated protein	protein-coding	0.040000	0.522388			
ePOU_nocontrol_ChIP_peaks_unique-1995	chr5	125081376	125081576	+	0.71296	NA	intron (NM_001253904, intron 12 of 47)	intron (NM_001253904, intron 12 of 47)	78028	NM_028443	73121	Mm.296138	NM_028443	ENSMUSG00000037962	Rflna	3110032G18Rik|Fam101a|cfm|cfm2	refilin A	protein-coding	0.030000	0.582090			
ePOU_nocontrol_ChIP_peaks_unique-1112	chr17	56218736	56218936	+	0.71296	NA	promoter-TSS (NM_172624)	promoter-TSS (NM_172624)	53	NM_172624	224897	Mm.205535	NM_172624	ENSMUSG00000001229	Dpp9	6430584G11Rik|A330078I11|DPP IX|DPRP2	dipeptidylpeptidase 9	protein-coding	0.120000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-2562	chr9	82974229	82974429	+	0.71296	NA	intron (NM_001081216, intron 4 of 39)	(CCG)n|Simple_repeat|Simple_repeat	1160	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.130000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-1850	chr4	133729710	133729910	+	0.71296	NA	intron (NM_001363070, intron 1 of 19)	intron (NM_001363070, intron 1 of 19)	-12702	NR_106086	102465707		NR_106086	ENSMUSG00000104566	Mir7227	mmu-mir-7227	microRNA 7227	ncRNA	0.030000	0.547264			
merged_common-500	chr2	126151924	126152124	+	0.71296	NA	promoter-TSS (NM_029455)	promoter-TSS (NM_029455)	-20	NM_029455	75823	Mm.444732	NM_029455	ENSMUSG00000027209	Fam227b	4930525F21Rik	family with sequence similarity 227, member B	protein-coding	0.080000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-1434	chr2	106498526	106498726	+	0.71296	NA	intron (NR_040637, intron 1 of 2)	intron (NR_040637, intron 1 of 2)	24477	NR_040637	329483	Mm.246777	NR_040637	ENSMUSG00000087226	Gm14015	9330126M15	predicted gene 14015	ncRNA	0.015000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-701	chr13	93423115	93423315	+	0.71296	NA	Intergenic	Intergenic	76593	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.005000	0.338308			-13(ATTTTGTGATGCAAAC,+,0.00)
merged_common-505	chr2	145979942	145980142	+	0.71296	NA	intron (NM_001369121, intron 8 of 26)	intron (NM_001369121, intron 8 of 26)	45258	NM_175280	78774	Mm.136347	NM_175280	ENSMUSG00000037143	Cfap61	4930529M08Rik|BB178539|BC024760	cilia and flagella associated protein 61	protein-coding	0.010000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-1086	chr17	29490421	29490621	+	0.71296	NA	promoter-TSS (NM_008842)	promoter-TSS (NM_008842)	-264	NM_008842	18712	Mm.328931	NM_008842	ENSMUSG00000024014	Pim1	Pim-1	proviral integration site 1	protein-coding	0.125000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-2276	chr7	110441804	110442004	+	0.71296	NA	intron (NM_177324, intron 10 of 40)	intron (NM_177324, intron 10 of 40)	173016	NM_177324	319934	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.000000	0.258706			72(CTGTTCTTATTCTAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-381	chr4	53217904	53218104	+	0.71296	NA	Intergenic	Intergenic	-28192	NR_040665	78180	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.040000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-1946	chr5	76184079	76184279	+	0.71296	NA	exon (NM_011626, exon 1 of 6)	exon (NM_011626, exon 1 of 6)	299	NM_011626	21982	Mm.790	NM_011626	ENSMUSG00000029234	Tmem165	AV026557|Tpardl|Tparl|pFT27	transmembrane protein 165	protein-coding	0.140000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-1692	chr3	131799826	131800026	+	0.71296	NA	Intergenic	MLT1B|LTR|ERVL-MaLR	233894	NM_001289477	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.010000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-434	chr11	78113444	78113644	+	0.71296	NA	intron (NM_145430, intron 1 of 2)	L1M5|LINE|L1	-2082	NM_001364110	216971	Mm.119387	NM_145430	ENSMUSG00000037750	Fam222b	9630020I17Rik	family with sequence similarity 222, member B	protein-coding	0.010000	0.373134			
merged_common-6	chr1	30949765	30949965	+	0.71296	NA	promoter-TSS (NR_002688)	promoter-TSS (NR_002688)	-110	NM_011200	19243	Mm.491181	NM_011200	ENSMUSG00000026064	Ptp4a1	AA415290|AU019864|C130021B01|Prl-1	protein tyrosine phosphatase 4a1	protein-coding	0.155000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-747	chr14	17660763	17660963	+	0.71296	NA	promoter-TSS (NM_001113417)	promoter-TSS (NM_001113417)	-97	NM_001113417	21834	Mm.32563	NM_009380	ENSMUSG00000021779	Thrb	Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta	thyroid hormone receptor beta	protein-coding	0.115000	0.701493			58(CTTTGCATGGCTAATA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1031	chr16	83977431	83977631	+	0.71296	NA	Intergenic	Intergenic	-393612	NR_040567	75247	Mm.417813	NR_040567	ENSMUSG00000116907	4930553E22Rik	-	RIKEN cDNA 4930553E22 gene	ncRNA	0.000000	0.333333			18(ATATGCAATACAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-733	chr13	109840127	109840327	+	0.71296	NA	intron (NM_011056, intron 7 of 16)	intron (NM_011056, intron 7 of 16)	-63582	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.000000	0.393035			63(GCATTTTCATGAATAT,+,0.00),65(ATTTTCATGAATATGA,-,0.00)
merged_common-20	chr1	64214949	64215149	+	0.71296	NA	Intergenic	Intergenic	-93660	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.000000	0.402985			71(GTTTTGTGATGCAGAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1406	chr2	79888237	79888437	+	0.71296	NA	intron (NM_001159582, intron 7 of 15)	intron (NM_001159582, intron 7 of 15)	20062	NM_001009979	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.005000	0.278607			-71(ATGTAAATGAAAATAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-718	chr13	100774812	100775012	+	0.71296	NA	intron (NM_021886, intron 1 of 8)	B2_Mm2|SINE|B2	987	NM_021886	26886	Mm.273502	NM_021886	ENSMUSG00000045273	Cenph	1700021I11Rik|2410018A12Rik|2610042E16Rik|2810046K12Rik|AU044255|CENP-H|ENP	centromere protein H	protein-coding	0.000000	0.432836			9(CCTTTGTTATGCATTT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2040	chr6	15888778	15888978	+	0.71296	NA	Intergenic	Intergenic	168217	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.005000	0.298507			2(CAATTCTTATGTTAAA,+,0.00),34(TTTTTTTAATTTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-478	chr11	109811575	109811775	+	0.71296	NA	intron (NM_027038, intron 2 of 4)	ID_B1|SINE|B4	16371	NM_027038	69324	Mm.31700	NM_027038	ENSMUSG00000020617	1700012B07Rik	1700069D21Rik	RIKEN cDNA 1700012B07 gene	protein-coding	0.010000	0.398010			
merged_common-207	chr12	75520305	75520505	+	0.71296	NA	intron (NM_012024, intron 2 of 13)	MIR|SINE|MIR	75827	NM_012024	26932	Mm.259626	NM_012024	ENSMUSG00000021051	Ppp2r5e	4633401M22Rik|B56beta	protein phosphatase 2, regulatory subunit B', epsilon	protein-coding	0.005000	0.363184			
merged_common-120	chr10	105580669	105580869	+	0.71296	NA	intron (NR_038032, intron 2 of 2)	L1MC4|LINE|L1	6218	NR_038032	327812	Mm.191660	NR_038032	ENSMUSG00000085282	Gm15663	9330159K06	predicted gene 15663	ncRNA	0.020000	0.472637			17(GTTTGCATGAGAATAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-510	chr12	10390865	10391065	+	0.71296	NA	TTS (NM_027588)	TTS (NM_027588)	185	NM_023697	105014	Mm.119343	NM_023697	ENSMUSG00000020621	Rdh14	3110030G19Rik|AW215439|PAN2	retinol dehydrogenase 14 (all-trans and 9-cis)	protein-coding	0.100000	0.731343			
ePOU_nocontrol_ChIP_peaks_unique-69	chr1	83839989	83840189	+	0.71296	NA	Intergenic	Intergenic	378872	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-1319	chr19	54855334	54855534	+	0.71296	NA	Intergenic	Intergenic	244043	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.010000	0.373134			48(TAATTGTCATGGTGAT,+,0.00)
merged_common-280	chr14	117156063	117156263	+	0.71296	NA	intron (NM_001079844, intron 1 of 9)	intron (NM_001079844, intron 1 of 9)	230866	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.010000	0.383085			60(TTTTTGTTTTGCATAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1266	chr19	10388649	10388849	+	0.71296	NA	promoter-TSS (NM_173068)	promoter-TSS (NM_173068)	-341	NM_173068	54525	Mm.182654	NM_018801	ENSMUSG00000024743	Syt7	AI851541|B230112P13Rik	synaptotagmin VII	protein-coding	0.090000	0.656716			
merged_common-79	chr10	3891967	3892167	+	0.71296	NA	intron (NM_001033253, intron 2 of 15)	intron (NM_001033253, intron 2 of 15)	19400	NM_001033253	213783	Mm.150831	NM_001033253	ENSMUSG00000040624	Plekhg1	D10Ertd733e|Gm521|mKIAA1209	pleckstrin homology domain containing, family G (with RhoGef domain) member 1	protein-coding	0.000000	0.452736			-55(CTTTTCTTATGCAGAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2143	chr6	114875134	114875334	+	0.71296	NA	intron (NM_177683, intron 2 of 4)	intron (NM_177683, intron 2 of 4)	46587	NM_177683	232334	Mm.268357	NM_177683	ENSMUSG00000030315	Vgll4	BC048841|VGL-4	vestigial like family member 4	protein-coding	0.055000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-328	chr10	125213811	125214011	+	0.71296	NA	Intergenic	Intergenic	94905	NM_001358915	20503	Mm.29161	NM_011391	ENSMUSG00000020102	Slc16a7	4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2	solute carrier family 16 (monocarboxylic acid transporters), member 7	protein-coding	0.010000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-401	chr11	59459064	59459264	+	0.71296	NA	TTS (NM_001205068)	TTS (NM_001205068)	9119	NM_001205068	194952	Mm.295954	NM_178659	ENSMUSG00000036819	Jmjd4	6430559I23	jumonji domain containing 4	protein-coding	0.020000	0.502488			
ePOU_nocontrol_ChIP_peaks_unique-2298	chr7	120835692	120835892	+	0.71296	NA	Intergenic	Intergenic	-7039	NM_007908	13631	Mm.25997	NM_007908	ENSMUSG00000035064	Eef2k	C86191|eEF-2K	eukaryotic elongation factor-2 kinase	protein-coding	0.045000	0.547264			
ePOU_nocontrol_ChIP_peaks_unique-1190	chr18	38338648	38338848	+	0.71296	NA	intron (NM_011937, intron 1 of 6)	intron (NM_011937, intron 1 of 6)	245	NM_011937	26384	Mm.22374	NM_011937	ENSMUSG00000052102	Gnpda1	GNPDA|Gnp1|Gnpi|oscillin	glucosamine-6-phosphate deaminase 1	protein-coding	0.085000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-287	chr10	94172728	94172928	+	0.71296	NA	intron (NM_011629, intron 9 of 13)	intron (NM_011629, intron 9 of 13)	24897	NM_011629	22025	Mm.107483	NM_011629	ENSMUSG00000005897	Nr2c1	4831444H07Rik|80.3|Eenr|TR2|Tr2-11	nuclear receptor subfamily 2, group C, member 1	protein-coding	0.020000	0.467662			0(GATTTGTTATTCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1216	chr18	62175502	62175702	+	0.71296	NA	Intergenic	Intergenic	4379	NM_007420	11555	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.010000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-1326	chr2	4396967	4397167	+	0.71296	NA	intron (NM_172475, intron 1 of 22)	intron (NM_172475, intron 1 of 22)	-3909	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.005000	0.477612			7(ACTTTGCAATGCAAAG,+,0.00),8(CTTTGCAATGCAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-552	chr12	59001430	59001630	+	0.71296	NA	intron (NM_001361956, intron 5 of 19)	intron (NM_001361956, intron 5 of 19)	10487	NM_009147	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0.000000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-581	chr12	79663196	79663396	+	0.71296	NA	intron (NM_009014, intron 8 of 10)	intron (NM_009014, intron 8 of 10)	261437	NR_131075	77290	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.035000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-976	chr16	23988685	23988885	+	0.71296	NA	promoter-TSS (NM_009744)	promoter-TSS (NM_009744)	67	NM_009744	12053	Mm.347398	NM_009744	ENSMUSG00000022508	Bcl6	Bcl5	B cell leukemia/lymphoma 6	protein-coding	0.155000	0.781095			
ePOU_nocontrol_ChIP_peaks_unique-1951	chr5	90223892	90224092	+	0.71296	NA	promoter-TSS (NR_028088)	promoter-TSS (NR_028088)	4	NR_028088	231430	Mm.319697	NM_001033310	ENSMUSG00000035505	Cox18	BC038311	cytochrome c oxidase assembly protein 18	protein-coding	0.100000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-957	chr16	15984478	15984678	+	0.71296	NA	intron (NM_001355731, intron 7 of 18)	intron (NM_001355731, intron 7 of 18)	97292	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.010000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-1555	chr3	31145812	31146012	+	0.71296	NA	Intergenic	Intergenic	-4008	NM_008770	18417	Mm.4425	NM_008770	ENSMUSG00000037625	Cldn11	Claudin-11|Claudin11|Osp|Otm	claudin 11	protein-coding	0.020000	0.417910			
merged_common-442	chr19	53284718	53284918	+	0.71296	NA	Intergenic	Intergenic	-25688	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.040000	0.452736		-17(AATGAATATGCAGT,+,0.00),-17(AATGAATATGCAGT,-,0.00)	43(ATTTCCATGATAAAAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1565	chr3	39318671	39318871	+	0.71296	NA	Intergenic	Intergenic	431831	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.000000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-1199	chr18	45284625	45284825	+	0.71296	NA	intron (NM_001312905, intron 1 of 10)	L1MA4A|LINE|L1	15866	NM_001312905	140492	Mm.411614	NM_080465	ENSMUSG00000054477	Kcnn2	KCa2.2|SK2|SKCA2|bc|fri	potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2	protein-coding	0.000000	0.323383		-19(AATGCATAATCATA,+,0.00),-19(AATGCATAATCATA,-,0.00)	
merged_common-572	chr4	12905005	12905205	+	0.71296	NA	Intergenic	Intergenic	-1732	NM_001171801	208820	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0.005000	0.263682		-13(TGTGAATATGCATT,+,0.00),-13(TGTGAATATGCATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-323	chr10	120257802	120258002	+	0.71296	NA	Intergenic	Intergenic	30842	NM_025431	66225	Mm.291755	NM_025431	ENSMUSG00000020224	Llph	1190005P17Rik	LLP homolog, long-term synaptic facilitation (Aplysia)	protein-coding	0.030000	0.358209			
merged_common-326	chr16	25407459	25407659	+	0.71296	NA	intron (NM_175165, intron 4 of 5)	intron (NM_175165, intron 4 of 5)	120742	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	0.025000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-918	chr15	86410752	86410952	+	0.71296	NA	intron (NM_001358062, intron 8 of 9)	intron (NM_001358062, intron 8 of 9)	133177	NM_001358062	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.020000	0.552239			
ePOU_nocontrol_ChIP_peaks_unique-11	chr1	25704998	25705198	+	0.71296	NA	intron (NM_175642, intron 2 of 30)	intron (NM_175642, intron 2 of 30)	124609	NM_175642	210933	Mm.336569	NM_175642	ENSMUSG00000033569	Adgrb3	A830096D10Rik|Bai3	adhesion G protein-coupled receptor B3	protein-coding	0.000000	0.273632		-1(TATATATATGCATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2310	chr7	127195849	127196049	+	0.71296	NA	5' UTR (NM_001285907, exon 1 of 7)	5' UTR (NM_001285907, exon 1 of 7)	128	NM_001285905	70233	Mm.28050	NM_027353	ENSMUSG00000042502	Cd2bp2	1500011B02Rik|2410024K20Rik|AW048183	CD2 cytoplasmic tail binding protein 2	protein-coding	0.080000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-216	chr10	25929456	25929656	+	0.71296	NA	Intergenic	Intergenic	-92119	NR_045349	73803	Mm.258921	NR_045349	ENSMUSG00000112444	4930401C15Rik	-	RIKEN cDNA 4930401C15 gene	ncRNA	0.015000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-721	chr13	102600232	102600432	+	0.71296	NA	Intergenic	Intergenic	-93215	NM_001360519	17079	Mm.373974	NM_008533	ENSMUSG00000021624	Cd180	F630107B15|Ly-78|Ly78|RP105	CD180 antigen	protein-coding	0.005000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-1431	chr2	104590356	104590556	+	0.71296	NA	promoter-TSS (NM_145529)	promoter-TSS (NM_145529)	-28	NM_145529	228410	Mm.259876	NM_145529	ENSMUSG00000027176	Cstf3	4732468G05Rik|C79532|CstF-77	cleavage stimulation factor, 3' pre-RNA, subunit 3	protein-coding	0.105000	0.666667			37(CCATTTTAATTCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1775	chr4	70781780	70781980	+	0.71296	NA	Intergenic	Intergenic	-246952	NM_172694	230316	Mm.251188	NM_172694	ENSMUSG00000039270	Megf9	4933405H16Rik|9630025C07|Egfl5|mKIAA0818	multiple EGF-like-domains 9	protein-coding	0.010000	0.378109			80(TCCTTGTTATTCATAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-235	chr16	75853914	75854114	+	0.71296	NA	Intergenic	Intergenic	55252	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.020000	0.427861		51(TATGAATATGCATA,+,0.00),51(TATGAATATGCATA,-,0.00)	44(ATATTGTTATGAATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-58	chr1	70881273	70881473	+	0.71296	NA	intron (NM_177164, intron 3 of 3)	intron (NM_177164, intron 3 of 3)	155658	NM_177164	320460	Mm.360649	NM_177164	ENSMUSG00000045648	Vwc2l	A830006F12Rik|Brl	von Willebrand factor C domain-containing protein 2-like	protein-coding	0.005000	0.363184	6(CATGAATAAATCATC,+,0.00),6(CATGAATAAATCATC,-,0.00),25(CATGAATTATTCATT,+,0.00),25(CATGAATTATTCATT,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-277	chr19	29421101	29421301	+	0.71296	NA	intron (NM_021396, intron 1 of 5)	L1M2|LINE|L1	10282	NM_021396	58205	Mm.116737	NM_021396	ENSMUSG00000016498	Pdcd1lg2	B7-DC|Btdc|F730015O22Rik|PD-L2	programmed cell death 1 ligand 2	protein-coding	0.005000	0.293532		23(CATACATATGTATA,+,0.00),23(CATACATATGTATA,-,0.00),57(CATATATATGCATA,+,0.00),63(TATGCATATACATA,+,0.00),63(TATGCATATACATA,-,0.00),83(CATATATATGCATA,+,0.00)	
merged_common-24	chr1	72307204	72307404	+	0.71296	NA	promoter-TSS (NM_009533)	promoter-TSS (NM_009533)	-117	NM_009533	22596	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.020000	0.502488			
ePOU_nocontrol_ChIP_peaks_unique-969	chr16	22389678	22389878	+	0.71296	NA	intron (NM_001358428, intron 11 of 12)	intron (NM_001358428, intron 11 of 12)	48590	NM_001358428	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.015000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-2611	chr9	119448710	119448910	+	0.71296	NA	intron (NR_153320, intron 4 of 6)	intron (NR_153320, intron 4 of 6)	3850	NR_153320	208194	Mm.101578	NM_172456	ENSMUSG00000042787	Exog	AW557704|ENGL-B|ENGL-a|Endogl1|Endogl2|Engl|Engla|Englb	endo/exonuclease (5'-3'), endonuclease G-like	protein-coding	0.020000	0.507463			
merged_common-477	chr2	69069185	69069385	+	0.71296	NA	intron (NM_172856, intron 7 of 9)	intron (NM_172856, intron 7 of 9)	-66515	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.000000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-1809	chr4	102570318	102570518	+	0.71296	NA	5' UTR (NM_001177980, exon 1 of 10)	5' UTR (NM_001177980, exon 1 of 10)	358	NM_001177980	18578	Mm.20181	NM_019840	ENSMUSG00000028525	Pde4b	Dpde4|R74983|dunce	phosphodiesterase 4B, cAMP specific	protein-coding	0.015000	0.527363			46(GCACAGTTATGCAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-393	chr11	54860754	54860954	+	0.71296	NA	promoter-TSS (NM_001363191)	promoter-TSS (NM_001363191)	-257	NM_001363191	75530	Mm.83578	NM_029327	ENSMUSG00000020268	Lyrm7	1700024C24Rik|9330147L21Rik	LYR motif containing 7	protein-coding	0.080000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-1605	chr3	70488794	70488994	+	0.71296	NA	Intergenic	Intergenic	318397	NR_040556	625901	Mm.366028	NR_040556	ENSMUSG00000097252	Gm6634	EG625901	predicted gene 6634	ncRNA	0.005000	0.278607			
ePOU_nocontrol_ChIP_peaks_unique-1697	chr3	134050724	134050924	+	0.71296	NA	Intergenic	Intergenic	-185671	NM_001004367	319478	Mm.224814	NM_001004367	ENSMUSG00000044365	Cxxc4	9330210J02Rik|C030003J12Rik|Idax	CXXC finger 4	protein-coding	0.000000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-426	chr11	72953850	72954050	+	0.71296	NA	Intergenic	Intergenic	-7219	NM_001163337	53313	Mm.6306	NM_016745	ENSMUSG00000020788	Atp2a3	SERCA3b|Serca3	ATPase, Ca++ transporting, ubiquitous	protein-coding	0.000000	0.592040			44(GCATTGTCATGGAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1423	chr2	94437975	94438175	+	0.71296	NA	5' UTR (NM_001349003, exon 1 of 14)	5' UTR (NM_001349003, exon 1 of 14)	111	NM_001305258	11800	Mm.181824	NM_007466	ENSMUSG00000027193	Api5	AAC-11|AI196452|API-5	apoptosis inhibitor 5	protein-coding	0.150000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-472	chr11	103159038	103159238	+	0.71296	NA	Intergenic	Intergenic	-12000	NM_001077698	57778	Mm.138913	NM_019679	ENSMUSG00000055805	Fmnl1	8030453N10Rik|AI553564|Fmnl|Fnrl|Frls	formin-like 1	protein-coding	0.055000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-2389	chr8	60865530	60865730	+	0.71296	NA	Intergenic	Intergenic	-24763	NM_028299	72612	Mm.25263	NM_028299	ENSMUSG00000038005	Hpf1	2700029M09Rik|C230006B22Rik|C4orf27	histone PARylation factor 1	protein-coding	0.010000	0.358209			-15(TCACTATCATATAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1226	chr18	69428985	69429185	+	0.71296	NA	intron (NM_001361127, intron 3 of 19)	intron (NM_001361127, intron 3 of 19)	82925	NM_001361128	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.015000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-914	chr15	81858244	81858444	+	0.71296	NA	promoter-TSS (NM_020507)	promoter-TSS (NM_020507)	-18	NM_020507	57259	Mm.323595	NM_020507	ENSMUSG00000048546	Tob2	2900090N22Rik|4930545K18Rik|AV071822|mKIAA1663	transducer of ERBB2, 2	protein-coding	0.060000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-2580	chr9	99629203	99629403	+	0.71296	NA	promoter-TSS (NM_001311142)	promoter-TSS (NM_001311142)	-228	NM_028258	72507	Mm.221455	NM_028258	ENSMUSG00000037784	Dzip1l	2610524A10Rik|AI663976	DAZ interacting protein 1-like	protein-coding	0.020000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-894	chr15	75748319	75748519	+	0.71296	NA	promoter-TSS (NM_194350)	promoter-TSS (NM_194350)	-98	NM_194350	378435		NM_194350	ENSMUSG00000047591	Mafa	RIPE3b1	v-maf musculoaponeurotic fibrosarcoma oncogene family, protein A (avian)	protein-coding	0.080000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-166	chr1	180089182	180089382	+	0.71296	NA	intron (NM_001359544, intron 12 of 35)	AT_rich|Low_complexity|Low_complexity	104203	NM_001163290	67426	Mm.38330	NM_023341	ENSMUSG00000026489	Coq8a	4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451	coenzyme Q8A	protein-coding	0.005000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-372	chr11	37560902	37561102	+	0.71296	NA	Intergenic	Intergenic	-97987	NR_131154	100039148	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	-	predicted gene 12128	ncRNA	0.010000	0.323383			
ePOU_nocontrol_ChIP_peaks_unique-1249	chr18	88971782	88971982	+	0.71296	NA	promoter-TSS (NR_105777)	promoter-TSS (NR_105777)	92	NM_175542	246102	Mm.772	NM_175542	ENSMUSG00000023066	Rttn	4921538A15Rik|AI666264|C530033I08Rik|D230040K24	rotatin	protein-coding	0.035000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-740	chr13	116694674	116694874	+	0.71296	NA	Intergenic	Intergenic	143404	NR_153406	74680	Mm.488118	NR_153406	ENSMUSG00000114290	4930435F18Rik	-	RIKEN cDNA 4930435F18 gene	ncRNA	0.010000	0.338308	-25(TATACATTATTCATT,+,0.00),-25(TATACATTATTCATT,-,0.00)		-13(ATTTCCTAAACAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1550	chr3	27454341	27454541	+	0.71296	NA	intron (NM_001356953, intron 22 of 26)	intron (NM_001356953, intron 22 of 26)	83090	NM_177330	208188	Mm.194721	NM_177330	ENSMUSG00000051136	Ghsr	C530020I22Rik|GHRP|GHS-R|Ghsr1a	growth hormone secretagogue receptor	protein-coding	0.010000	0.373134			42(GTATAGTTATGAAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1900	chr5	24053219	24053419	+	0.71296	NA	Intergenic	Intergenic	-22629	NM_053090	84652	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.015000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-2157	chr6	127349789	127349989	+	0.71296	NA	Intergenic	Intergenic	-41922	NR_073373	232386	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.025000	0.472637			
Oct4_nocontrol_ChIP_peaks_unique-403	chr4	134910319	134910519	+	0.71296	NA	intron (NM_027935, intron 2 of 6)	B2_Mm2|SINE|B2	4497	NM_027935	71817	Mm.88349	NM_027935	ENSMUSG00000028822	Tmem50a	3200001F09Rik|CAM|Smp1	transmembrane protein 50A	protein-coding	0.005000	0.378109			
merged_common-590	chr4	70410317	70410517	+	0.71296	NA	promoter-TSS (NM_001313762)	promoter-TSS (NM_001313762)	18	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.120000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-27	chr1	52059656	52059856	+	0.71296	NA	intron (NM_011487, intron 3 of 23)	intron (NM_011487, intron 3 of 23)	51516	NM_011487	20849	Mm.1550	NM_011487	ENSMUSG00000062939	Stat4	-	signal transducer and activator of transcription 4	protein-coding	0.005000	0.358209			25(GCATTACCATTAAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1636	chr3	94954114	94954314	+	0.71296	NA	promoter-TSS (NM_001355706)	promoter-TSS (NM_001355706)	106	NM_017395	53970	Mm.24308	NM_017395	ENSMUSG00000005774	Rfx5	-	regulatory factor X, 5 (influences HLA class II expression)	protein-coding	0.060000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-654	chr13	38635016	38635216	+	0.71296	NA	promoter-TSS (NM_139063)	promoter-TSS (NM_139063)	-24	NM_139063	17828	Mm.261554	NM_139063	ENSMUSG00000038982	Bloc1s5	1810074A19Rik|Muted|mu	biogenesis of lysosomal organelles complex-1, subunit 5, muted	protein-coding	0.105000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-77	chr1	86758265	86758465	+	0.71296	NA	intron (NM_153530, intron 4 of 20)	intron (NM_153530, intron 4 of 20)	54561	NM_001172157	208718	Mm.389152	NM_153530	ENSMUSG00000053333	Dis3l2	4930429A22Rik|8030493P09Rik	DIS3 like 3'-5' exoribonuclease 2	protein-coding	0.025000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-402	chr11	60352798	60352998	+	0.71296	NA	promoter-TSS (NM_029044)	promoter-TSS (NM_029044)	7	NM_001039092	216810	Mm.218875	NM_153080	ENSMUSG00000000538	Tom1l2	2900016I08Rik|A730055F12Rik|AU042072|Srebf1	target of myb1-like 2 (chicken)	protein-coding	0.095000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-2335	chr8	3221133	3221333	+	0.71296	NA	intron (NM_001330056, intron 2 of 21)	CpG	58384	NM_001330056	16337	Mm.268003	NM_010568	ENSMUSG00000005534	Insr	4932439J01Rik|CD220|D630014A15Rik|IR|IR-A|IR-B	insulin receptor	protein-coding	0.085000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-1869	chr4	150333989	150334189	+	0.71296	NA	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	52173	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.005000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-2311	chr7	127232882	127233082	+	0.71296	NA	promoter-TSS (NM_001360912)	promoter-TSS (NM_001360912)	-79	NM_001360912	233887	Mm.258371	NM_146201	ENSMUSG00000045598	Zfp553	2600009K23Rik|AI431057|BC026401|C330013F15Rik|Znf48	zinc finger protein 553	protein-coding	0.080000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-2119	chr6	94283934	94284134	+	0.71296	NA	promoter-TSS (NM_001286786)	promoter-TSS (NM_001286786)	-117	NM_001286784	14924	Mm.217216	NM_010367	ENSMUSG00000045095	Magi1	AIP3|BAP1|Baiap1|Gukmi1|MAGI1c|Magi-1|TNRC19|WWP3|mKIAA4129	membrane associated guanylate kinase, WW and PDZ domain containing 1	protein-coding	0.070000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-2437	chr8	91889895	91890095	+	0.71296	NA	Intergenic	Intergenic	-88341	NM_008393	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.010000	0.417910			73(ATATTATTATGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2563	chr9	84240724	84240924	+	0.71296	NA	Intergenic	Intergenic	292043	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.000000	0.338308			-58(TAATTCTGATTCAAAT,+,0.00),-10(CTTTACAAGACAAATG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1670	chr3	116675961	116676161	+	0.71296	NA	intron (NM_001362374, intron 7 of 8)	B3A|SINE|B2	-8444	NR_162801	114482884		NR_162801		Mir3473h	mmu-mir-3473h	microRNA mir-3473h	ncRNA	0.010000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-684	chr13	70057953	70058153	+	0.71296	NA	intron (NR_131156, intron 2 of 2)	intron (NR_131156, intron 2 of 2)	-29705	NR_045965	74280	Mm.273343	NR_045965	ENSMUSG00000099639	1700084F23Rik	1700003E18Rik|4930589D02Rik	RIKEN cDNA 1700084F23 gene	ncRNA	0.030000	0.437811	51(AATGCATAATAGATG,-,0.00)		65(GTATGCATGACAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-43	chr1	59944130	59944330	+	0.71296	NA	intron (NM_001037725, intron 1 of 7)	Cheshire|DNA|hAT-Charlie	31224	NM_001037725	72750	Mm.258250	NM_001037725	ENSMUSG00000041040	Fam117b	2810425F24Rik|6330416D14Rik|Als2cr13	family with sequence similarity 117, member B	protein-coding	0.010000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-901	chr15	77153651	77153851	+	0.71296	NA	promoter-TSS (NM_001286419)	promoter-TSS (NM_001286419)	61	NM_001286418	93686	Mm.202774	NM_053104	ENSMUSG00000033565	Rbfox2	Fbm2|Fxh|Hrnbp2|Rbm9	RNA binding protein, fox-1 homolog (C. elegans) 2	protein-coding	0.020000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-411	chr11	62865208	62865408	+	0.71296	NA	intron (NM_001291441, intron 8 of 12)	MER2|DNA|TcMar-Tigger	-14147	NM_001356520	67510	Mm.9806	NM_026210	ENSMUSG00000014177	Tvp23b	1810036I24Rik|Fam18b|Fam18b1	trans-golgi network vesicle protein 23B	protein-coding	0.000000	0.358209	-38(GATAAATAATGCACA,+,0.00)		-15(CAAATGCCATGTAAAT,+,0.00)
merged_common-540	chr3	81909991	81910191	+	0.71296	NA	Intergenic	Intergenic	-22510	NM_177662	229445	Mm.254642	NM_177662	ENSMUSG00000028015	Ctso	A330105D01Rik|AI118514	cathepsin O	protein-coding	0.000000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-1427	chr2	103268802	103269002	+	0.71296	NA	intron (NM_007914, intron 6 of 8)	intron (NM_007914, intron 6 of 8)	34294	NM_007914	13661	Mm.10724	NM_007914	ENSMUSG00000012350	Ehf	9030625L19Rik|AU019492	ets homologous factor	protein-coding	0.005000	0.437811			-76(TTTTTGGCATGCAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-518	chr12	31804754	31804954	+	0.71296	NA	intron (NM_001163126, intron 10 of 22)	intron (NM_001163126, intron 10 of 22)	-90971	NM_175191	73010	Mm.441517	NM_175191	ENSMUSG00000044067	Gpr22	2900068K05Rik|AW061316	G protein-coupled receptor 22	protein-coding	0.005000	0.293532			63(TATTTATTATGTAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1072	chr17	24478858	24479058	+	0.71296	NA	intron (NM_001252463, intron 1 of 8)	CpG	120	NM_001252464	56716	Mm.289516	NM_019988	ENSMUSG00000024142	Mlst8	0610033N12Rik|AA409454|AI505104|AI851821|Gbl	MTOR associated protein, LST8 homolog (S. cerevisiae)	protein-coding	0.080000	0.661692			
merged_common-301	chr15	66572605	66572805	+	0.71296	NA	Intergenic	Intergenic	-4867	NM_001081409	239510	Mm.267473	NM_178718	ENSMUSG00000072501	Phf20l1	CGI-72|E130113K22Rik	PHD finger protein 20-like 1	protein-coding	0.005000	0.363184			-75(ATTTGAATACAAAAAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2089	chr6	59434436	59434636	+	0.71296	NA	Intergenic	Intergenic	-8230	NM_183183	243385	Mm.138080	NM_183183	ENSMUSG00000045441	Gprin3	C030038J10Rik|C730021L23	GPRIN family member 3	protein-coding	0.010000	0.348259			75(TTTTAAATGAAAATTA,-,0.00)
merged_common-501	chr2	128967162	128967362	+	0.71296	NA	promoter-TSS (NM_178404)	promoter-TSS (NM_178404)	-140	NM_178404	78751	Mm.26377	NM_178404	ENSMUSG00000042851	Zc3h6	4631426G04Rik|4833425H18Rik|AU024389|AW060453|Zc3hdc6|mKIAA2035	zinc finger CCCH type containing 6	protein-coding	0.100000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-152	chr1	171150486	171150686	+	0.71296	NA	promoter-TSS (NM_008623)	promoter-TSS (NM_008623)	17	NM_025321	66052	Mm.198138	NM_025321	ENSMUSG00000058076	Sdhc	0610010E03Rik|AI316496|AU019277	succinate dehydrogenase complex, subunit C, integral membrane protein	protein-coding	0.075000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-2361	chr8	35974578	35974778	+	0.71296	NA	Intergenic	Intergenic	-91721	NR_046181	330737	Mm.381743	NR_046181	ENSMUSG00000109761	5430403N17Rik	5430403N17	RIKEN cDNA 5430403N17 gene	ncRNA	0.010000	0.417910			-92(CATTTGTTCTGAAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2277	chr7	110614385	110614585	+	0.71296	NA	intron (NM_177324, intron 1 of 40)	CpG	435	NM_177324	319934	Mm.102970	NM_177324	ENSMUSG00000038371	Sbf2	4833411B01Rik|AA414977|AI317167|B430219L04Rik|Mtmr13|mMTMH1	SET binding factor 2	protein-coding	0.165000	0.796020			
ePOU_nocontrol_ChIP_peaks_unique-2537	chr9	62828839	62829039	+	0.71296	NA	Intergenic	Intergenic	-9846	NM_001033175	76524	Mm.283636	NM_001033175	ENSMUSG00000032245	Cln6	1810065L06Rik|AW743417|D9Bwg1455e|nclf	ceroid-lipofuscinosis, neuronal 6	protein-coding	0.070000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-158	chr1	175034404	175034604	+	0.71296	NA	Intergenic	Intergenic	-112685	NM_011825	23893	Mm.25760	NM_011825	ENSMUSG00000050069	Grem2	Gremlin2|Prdc	gremlin 2, DAN family BMP antagonist	protein-coding	0.010000	0.333333	22(CATAAATAATGCATA,+,0.00),22(CATAAATAATGCATA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2042	chr6	18240538	18240738	+	0.71296	NA	intron (NM_021050, intron 11 of 26)	intron (NM_021050, intron 11 of 26)	69951	NM_021050	12638	Mm.15621	NM_021050	ENSMUSG00000041301	Cftr	AW495489|Abcc7	cystic fibrosis transmembrane conductance regulator	protein-coding	0.000000	0.278607			
ePOU_nocontrol_ChIP_peaks_unique-982	chr16	29645025	29645225	+	0.71296	NA	intron (NM_133752, intron 27 of 28)	intron (NM_133752, intron 27 of 28)	65791	NM_133752	74143	Mm.274285	NM_133752	ENSMUSG00000038084	Opa1	1200011N24Rik|AI225888|AI847218|lilr3|mKIAA0567	OPA1, mitochondrial dynamin like GTPase	protein-coding	0.015000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-920	chr15	88862292	88862492	+	0.71296	NA	5' UTR (NM_145478, exon 1 of 6)	5' UTR (NM_145478, exon 1 of 6)	198	NM_145478	223775	Mm.400129	NM_145478	ENSMUSG00000035828	Pim3	BC026639|Kid1	proviral integration site 3	protein-coding	0.105000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-2519	chr9	50775255	50775455	+	0.71296	NA	non-coding (NR_045601, exon 1 of 14)	non-coding (NR_045601, exon 1 of 14)	130	NR_045601	102580	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	0.125000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-566	chr12	70875688	70875888	+	0.71296	NA	intron (NM_028127, intron 3 of 13)	Lx7|LINE|L1	50274	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.005000	0.323383		73(TGTAAATATGCATG,-,0.00)	-98(GTTTTGTTTTTTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1987	chr5	122372448	122372648	+	0.71296	NA	promoter-TSS (NM_026883)	promoter-TSS (NM_026883)	40	NM_024216	68080	Mm.266328	NM_024216	ENSMUSG00000029464	Gpn3	A930018B01Rik|Atpbd1c|D5Ertd708e	GPN-loop GTPase 3	protein-coding	0.110000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-1210	chr18	57249395	57249595	+	0.71296	NA	intron (NM_001001979, intron 8 of 24)	intron (NM_001001979, intron 8 of 24)	-105238	NM_028447	73137	Mm.29889	NM_028447	ENSMUSG00000024594	Prrc1	1190002C06Rik|2310058D16Rik|3110038B19Rik|9430085A19Rik	proline-rich coiled-coil 1	protein-coding	0.020000	0.492537			
merged_common-696	chr6	64265798	64265998	+	0.71296	NA	intron (NM_001370966, intron 8 of 15)	intron (NM_001370966, intron 8 of 15)	-463227	NM_007500	11921	Mm.57229	NM_007500	ENSMUSG00000073043	Atoh1	Hath1|MATH-1|Math1|bHLHa14	atonal bHLH transcription factor 1	protein-coding	0.005000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-1037	chr16	94312993	94313193	+	0.71296	NA	intron (NM_139145, intron 1 of 10)	intron (NM_139145, intron 1 of 10)	470	NM_139145	110948	Mm.30921	NM_139145	ENSMUSG00000040820	Hlcs	410I21.SP6|D16Jhu34	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	protein-coding	0.040000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-345	chr11	6762400	6762600	+	0.71296	NA	Intergenic	Intergenic	-42463	NR_046025	626419	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	-	predicted gene 11981	ncRNA	0.025000	0.477612	-68(TATGTTTTATTCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-5	chr1	12580074	12580274	+	0.71296	NA	Intergenic	Intergenic	-87389	NR_045297	329096	Mm.417782	NR_045297	ENSMUSG00000097171	Gm17644	4932411L15	predicted gene, 17644	ncRNA	0.005000	0.378109	83(CCTGAAAAATGCATA,+,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1548	chr3	26044674	26044874	+	0.71296	NA	intron (NM_138666, intron 3 of 7)	intron (NM_138666, intron 3 of 7)	109212	NM_001357096	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.005000	0.378109			-17(ATTTACATAACAAAGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-868	chr15	43803561	43803761	+	0.71296	NA	Intergenic	Intergenic	66368	NM_175502	239408	Mm.41219	NM_175502	ENSMUSG00000054409	Tmem74	AA549547|B230382K22Rik	transmembrane protein 74	protein-coding	0.010000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-1509	chr2	157840835	157841035	+	0.71296	NA	intron (NM_025680, intron 11 of 15)	intron (NM_025680, intron 11 of 15)	-73718	NM_198627	277432	Mm.441156	NM_198627	ENSMUSG00000037843	Vstm2l	Gm691	V-set and transmembrane domain containing 2-like	protein-coding	0.000000	0.432836			-46(TTATTGTAATTGAAAT,+,0.00),-22(GTTTGCATAATAAAAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-981	chr16	28050092	28050292	+	0.71296	NA	Intergenic	L1MCb|LINE|L1	200262	NR_033475	100038623	Mm.387135	NR_033475	ENSMUSG00000116654	Gm10823	-	predicted gene 10823	ncRNA	0.000000	0.308458	-41(AATGAATTAGGAATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-442	chr11	85517990	85518190	+	0.71296	NA	intron (NM_138681, intron 16 of 25)	intron (NM_138681, intron 16 of 25)	164926	NM_001166642	192197	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.000000	0.223881			
ePOU_nocontrol_ChIP_peaks_unique-525	chr12	34935622	34935822	+	0.71296	NA	Intergenic	Intergenic	-18627	NM_001271386	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.005000	0.328358	18(CATGAATTATTCATT,+,0.00),18(CATGAATTATTCATT,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-25	chr1	133667734	133667934	+	0.71296	NA	Intergenic	RLTR12D|LTR|ERVK	-6435	NM_001276767	70579	Mm.245357	NM_144530	ENSMUSG00000102976	Zc3h11a	1110003F06Rik|5730454B08Rik|G630041M05Rik|Zc3hdc11a|Zc3hh11a|mKIAA0663	zinc finger CCCH type containing 11A	protein-coding	0.005000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-1342	chr2	18494785	18494985	+	0.71296	NA	Intergenic	RLTR13B4|LTR|ERVK	-102055	NM_001190817	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.010000	0.402985	59(ATTGCATTATTCATG,+,0.00),59(ATTGCATTATTCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2477	chr9	3925771	3925971	+	0.71296	NA	Intergenic	Intergenic	383623	NR_136940	67618	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.005000	0.363184			
Oct4_nocontrol_ChIP_peaks_unique-6	chr1	43445790	43445990	+	0.71296	NA	5' UTR (NM_010879, exon 1 of 5)	5' UTR (NM_010879, exon 1 of 5)	139	NM_010879	17974	Mm.389903	NM_010879	ENSMUSG00000066877	Nck2	4833426I10Rik|Grb4|NCKbeta|Nck-2	non-catalytic region of tyrosine kinase adaptor protein 2	protein-coding	0.165000	0.800995			
ePOU_nocontrol_ChIP_peaks_unique-358	chr11	30022701	30022901	+	0.71296	NA	intron (NM_146016, intron 2 of 41)	intron (NM_146016, intron 2 of 41)	3232	NM_146016	237711	Mm.445271	NM_146016	ENSMUSG00000044072	Eml6	2900083P10Rik|C230094A16Rik|EMAP-6	echinoderm microtubule associated protein like 6	protein-coding	0.005000	0.402985			-55(ATTAGCAAGGCAAAAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-706	chr13	96388064	96388264	+	0.71296	NA	promoter-TSS (NM_026173)	promoter-TSS (NM_026173)	-130	NM_026173	67463	Mm.86472	NM_026173	ENSMUSG00000021671	Poc5	1200014M14Rik|AV144706	POC5 centriolar protein	protein-coding	0.055000	0.547264			
ePOU_nocontrol_ChIP_peaks_unique-2416	chr8	78122364	78122564	+	0.71296	NA	Intergenic	Intergenic	-90878	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.000000	0.308458			54(ATCTACAGGAAAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-550	chr12	57354804	57355004	+	0.71296	NA	intron (NM_001164370, intron 7 of 9)	ORR1C2|LTR|ERVL-MaLR	124479	NM_001164370	73490	Mm.268180	NM_001164370	ENSMUSG00000047022	Mipol1	1700081O04Rik|6030439O22Rik|AU021838|AW536152|D12Ertd19e	mirror-image polydactyly 1	protein-coding	0.005000	0.432836		10(TATGAATATGCGTG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2338	chr8	4275767	4275967	+	0.71296	NA	promoter-TSS (NM_011592)	promoter-TSS (NM_011592)	38	NM_011592	21856	Mm.195249	NM_011592	ENSMUSG00000002949	Timm44	0710005E20Rik|D8Ertd118e|Mimt44|Tim44	translocase of inner mitochondrial membrane 44	protein-coding	0.095000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-179	chr1	186566933	186567133	+	0.71296	NA	Intergenic	Intergenic	-8352	NR_131124	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.000000	0.338308			60(CTTTTTTGTTGCATAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-387	chr4	58899303	58899503	+	0.71296	NA	intron (NM_172381, intron 1 of 48)	intron (NM_172381, intron 1 of 48)	12527	NM_001355696	230249	Mm.234801	NM_172381	ENSMUSG00000050812	Ecpas	AI314180|AW558785|BB181316|mKIAA0368	Ecm29 proteasome adaptor and scaffold	protein-coding	0.000000	0.338308			
ePOU_nocontrol_ChIP_peaks_unique-521	chr12	33035838	33036038	+	0.71296	NA	intron (NM_001024478, intron 18 of 19)	intron (NM_001024478, intron 18 of 19)	56937	NM_001024478	68764	Mm.60083	NM_001024478	ENSMUSG00000035860	Cdhr3	1110049B09Rik|BB172694|Cdh28	cadherin-related family member 3	protein-coding	0.040000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-70	chr1	84041200	84041400	+	0.71296	NA	intron (NM_001003948, intron 2 of 2)	intron (NM_001003948, intron 2 of 2)	177661	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.358209		81(AGTGAATATGCATA,+,0.00),81(AGTGAATATGCATA,-,0.00),87(TATGCATATACAGT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1785	chr4	83417516	83417716	+	0.71296	NA	promoter-TSS (NM_001358795)	promoter-TSS (NM_001358795)	-108	NR_152448	77634	Mm.271985	NM_029949	ENSMUSG00000028483	Snapc3	1810020H02Rik|4930558A07Rik|5031401C21Rik|AI414457|E030018J20Rik	small nuclear RNA activating complex, polypeptide 3	protein-coding	0.100000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-2587	chr9	105745025	105745225	+	0.71296	NA	intron (NM_001102607, intron 20 of 36)	intron (NM_001102607, intron 20 of 36)	64523	NM_172927	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.020000	0.447761		-27(TCTGCATATGCATC,+,0.00),-27(TCTGCATATGCATC,-,0.00)	-5(ATTAGCAAAGCAAAGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-712	chr13	98094008	98094208	+	0.71296	NA	intron (NM_012026, intron 2 of 35)	intron (NM_012026, intron 2 of 35)	112057	NM_012026	110596	Mm.252718	NM_012026	ENSMUSG00000021662	Arhgef28	9230110L08Rik|AI323540|D13Bwg1089e|RIP2|Rgnef|RhoGEF|Rhoip2|p190RhoGEF	Rho guanine nucleotide exchange factor (GEF) 28	protein-coding	0.005000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-736	chr13	112569154	112569354	+	0.71296	NA	intron (NM_139299, intron 1 of 16)	Lx9|LINE|L1	11408	NM_139299	218624	Mm.380801	NM_139299	ENSMUSG00000050377	Il31ra	CRL3|GLM-R|GPL|Glmr|NR10	interleukin 31 receptor A	protein-coding	0.000000	0.333333		-85(TGTACATATGCATT,+,0.00),-85(TGTACATATGCATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1401	chr2	77812765	77812965	+	0.71296	NA	intron (NM_178723, intron 1 of 9)	intron (NM_178723, intron 1 of 9)	3951	NM_178723	241494	Mm.490320	NM_178723	ENSMUSG00000027016	Zfp385b	B830010L13Rik|C130013B13Rik|Zfp533|Znf385b	zinc finger protein 385B	protein-coding	0.015000	0.388060		-77(TGTGCATATTCAAG,-,0.00)	
merged_common-416	chr18	75149181	75149381	+	0.71296	NA	intron (NM_027727, intron 13 of 16)	intron (NM_027727, intron 13 of 16)	130517	NM_027727	69190	Mm.173826	NM_027727	ENSMUSG00000035765	Dym	1810041M12Rik|4933427L07Rik|C030019K18Rik	dymeclin	protein-coding	0.025000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-1690	chr3	131085148	131085348	+	0.71296	NA	Intergenic	Intergenic	-25049	NM_010703	16842	Mm.255219	NM_010703	ENSMUSG00000027985	Lef1	3000002B05|AI451430|Lef-1	lymphoid enhancer binding factor 1	protein-coding	0.045000	0.502488			
ePOU_nocontrol_ChIP_peaks_unique-2168	chr6	145340820	145341020	+	0.71296	NA	Intergenic	CpG	-46705	NR_003625	381827	Mm.179075	NM_001001987		1700073E17Rik	-	ribosomal protein L7 pseudogene	pseudo	0.100000	0.676617			
merged_common-181	chr11	117000289	117000489	+	0.71296	NA	Intergenic	Intergenic	-76394	NR_027059	76972	Mm.309167	NR_027059	ENSMUSG00000086859	Snhg20	2810008D09Rik	small nucleolar RNA host gene 20	ncRNA	0.015000	0.512438			-33(CCATTATTATACAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-536	chr9	78527300	78527500	+	0.71296	NA	Intergenic	Intergenic	-45676	NM_010106	13627	Mm.138471	NM_010106	ENSMUSG00000037742	Eef1a1	-	eukaryotic translation elongation factor 1 alpha 1	protein-coding	0.050000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-329	chr10	127189103	127189303	+	0.71296	NA	promoter-TSS (NM_001358557)	promoter-TSS (NM_001358557)	-431	NM_001358557	52666	Mm.272230	NM_028027	ENSMUSG00000019467	Arhgef25	2410008H17Rik|D10Ertd610e|GEFT	Rho guanine nucleotide exchange factor (GEF) 25	protein-coding	0.040000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-2599	chr9	110624286	110624486	+	0.71296	NA	promoter-TSS (NM_026012)	promoter-TSS (NM_026012)	7	NM_026012	67169	Mm.46680	NM_026012	ENSMUSG00000032491	Nradd	2610311B09Rik|BB104149|NRDD|NRH2|PLAIDD	neurotrophin receptor associated death domain	protein-coding	0.045000	0.651741			
merged_common-627	chr4_JH584295_random	353	553	+	0.70735	NA	NA	Intergenic	NA	NA									0.025000	0.557214			
merged_common-218	chr12	108275517	108275717	+	0.70735	NA	promoter-TSS (NM_001159910)	promoter-TSS (NM_001159910)	-224	NM_001159910	668158		NM_001159910	ENSMUSG00000084883	Ccdc85c	EG668158|Gm265|Gm9010|hhy	coiled-coil domain containing 85C	protein-coding	0.115000	0.756219			
merged_common-833	chr9	60430120	60430320	+	0.70735	NA	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	80815	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.005000	0.482587			16(CCTTTGTTATGCAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-559	chr12	65377948	65378148	+	0.70735	NA	Intergenic	RLTR13B4|LTR|ERVK	152531	NM_027614	70948	Mm.219475	NM_027614	ENSMUSG00000035560	Wdr20rt	4921538B03Rik|4930427E19Rik|Wdr20|Wdr20b	WD repeat domain 20, retrogene	protein-coding	0.000000	0.398010	-27(CATGAATAATGCAAT,+,0.00),-27(CATGAATAATGCAAT,-,0.00)		
merged_common-112	chr10	86923296	86923496	+	0.70735	NA	intron (NM_138673, intron 28 of 68)	intron (NM_138673, intron 28 of 68)	84546	NM_138673	192188	Mm.279611	NM_138673	ENSMUSG00000035459	Stab2	FEEL-2|FELL|MFEEL-2|STAB-2	stabilin 2	protein-coding	0.000000	0.353234			
merged_common-722	chr6	143530913	143531113	+	0.70735	NA	Intergenic	Intergenic	4495	NR_155418	75904	Mm.414916	NR_155418	ENSMUSG00000084971	4930579D09Rik	-	RIKEN cDNA 4930579D09 gene	ncRNA	0.005000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-1379	chr2	52072380	52072580	+	0.69494	NA	promoter-TSS (NM_001355415)	promoter-TSS (NM_001355415)	-357	NM_175238	51869	Mm.254530	NM_175238	ENSMUSG00000036202	Rif1	5730435J01Rik|6530403D07Rik|AU016181|AW549474|D2Ertd145e	replication timing regulatory factor 1	protein-coding	0.010000	0.487562			57(TCACTCTCAATCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2079	chr6	50735910	50736110	+	0.64946	NA	Intergenic	Intergenic	-40105	NR_045984	319981	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0.010000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-333	chr10	128232164	128232364	+	0.64946	NA	TTS (NM_008600)	TTS (NM_008600)	201	NM_001136082	21853	Mm.6458	NM_011589	ENSMUSG00000039994	Timeless	C77407|Debt69|tim	timeless circadian clock 1	protein-coding	0.155000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-2341	chr8	6699316	6699516	+	0.64946	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-1594129	NM_011388	20494	Mm.3500	NM_011388	ENSMUSG00000023073	Slc10a2	9130221J18Rik|AI605518|ASBT|IBAT|ISBT	solute carrier family 10, member 2	protein-coding	0.000000	0.238806	-21(CATGCATTATTTATT,+,0.00),-21(CATGCATTATTTATT,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-107	chr11	121354323	121354523	+	0.64946	NA	promoter-TSS (NM_025793)	promoter-TSS (NM_025793)	24	NM_025793	66840	Mm.103986	NM_025793	ENSMUSG00000025173	Wdr45b	0610008N23Rik|AA408735|D16Bwg0193e|WIPI-3|Wdr45l	WD repeat domain 45B	protein-coding	0.150000	0.701493			
merged_common-595	chr4	83486297	83486497	+	0.64946	NA	promoter-TSS (NM_001347143)	promoter-TSS (NM_001347143)	66	NM_001290527	101739	Mm.105331	NM_133948	ENSMUSG00000028484	Psip1	AA408851|AU015605|Dfs70|Ledgfa|Ledgfb|Psip2	PC4 and SFRS1 interacting protein 1	protein-coding	0.165000	0.776119			
ePOU_nocontrol_ChIP_peaks_unique-2236	chr7	75650234	75650434	+	0.64946	NA	intron (NM_029332, intron 8 of 36)	intron (NM_029332, intron 8 of 36)	194800	NM_029332	75547	Mm.216107	NM_029332	ENSMUSG00000066406	Akap13	1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC	A kinase (PRKA) anchor protein 13	protein-coding	0.005000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-4	chr1	9615247	9615447	+	0.64946	NA	intron (NM_178399, intron 3 of 5)	intron (NM_178399, intron 3 of 5)	14080	NM_178399	76982	Mm.491098	NM_178399	ENSMUSG00000067879	Vxn	3110035E14Rik|AI415019|AV164974|R75066	vexin	protein-coding	0.015000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-1931	chr5	44798180	44798380	+	0.64946	NA	intron (NM_001077398, intron 1 of 8)	intron (NM_001077398, intron 1 of 8)	1466	NM_001359071	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.005000	0.373134			15(ATTTTATCATGCAAAC,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-858	chr15	36496639	36496839	+	0.64946	NA	promoter-TSS (NM_175134)	promoter-TSS (NM_175134)	-5	NM_001358007	68839	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0.120000	0.766169			
ePOU_nocontrol_ChIP_peaks_unique-551	chr12	57585776	57585976	+	0.64946	NA	TTS (NR_131110)	TTS (NR_131110)	21761	NM_001312644	70846	Mm.84118	NM_001037743	ENSMUSG00000046782	Ttc6	4921506M07Rik|EG639426|Gm69|Gm9813	tetratricopeptide repeat domain 6	protein-coding	0.015000	0.398010	-48(AATGCATAATTCATA,+,0.00),-48(AATGCATAATTCATA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2431	chr8	89310794	89310994	+	0.64946	NA	Intergenic	Intergenic	-266732	NM_021390	58198	Mm.214361	NM_021390	ENSMUSG00000031665	Sall1	Msal-3	spalt like transcription factor 1	protein-coding	0.005000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-2278	chr7	111122681	111122881	+	0.64946	NA	promoter-TSS (NR_015573)	promoter-TSS (NR_015573)	-106	NR_015573	75479	Mm.381620	NR_015573	ENSMUSG00000110424	1700012D14Rik	-	RIKEN cDNA 1700012D14 gene	ncRNA	0.095000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1972	chr5	107611132	107611332	+	0.64946	NA	intron (NM_001359918, intron 6 of 12)	intron (NM_001359918, intron 6 of 12)	13271	NM_001359916	231571	Mm.482420	NM_144911	ENSMUSG00000033773	Rpap2	AW060207	RNA polymerase II associated protein 2	protein-coding	0.005000	0.348259			-99(AATTGAAAGAGAATCA,-,0.00),81(ACATTTTCTTGTTGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1843	chr4	126046986	126047186	+	0.64946	NA	exon (NM_025544, exon 1 of 8)	exon (NM_025544, exon 1 of 8)	158	NM_025544	66407	Mm.195628	NM_025544	ENSMUSG00000028861	Mrps15	1500003E24Rik|2410002B11Rik|Mprs15	mitochondrial ribosomal protein S15	protein-coding	0.115000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-950	chr16	7797172	7797372	+	0.64946	NA	Intergenic	Intergenic	627864	NM_029070	74720	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	0.010000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-1596	chr3	66812440	66812640	+	0.64946	NA	Intergenic	Intergenic	166271	NM_001302358	20429	Mm.39093	NM_013665	ENSMUSG00000027833	Shox2	6330543G17Rik|OG12|Og12x|Prx3|SHOT	short stature homeobox 2	protein-coding	0.000000	0.313433			
ePOU_nocontrol_ChIP_peaks_unique-2420	chr8	82282333	82282533	+	0.64946	NA	Intergenic	Intergenic	120153	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.005000	0.318408			-7(ATCTGAATCAGAAATG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1006	chr16	45038724	45038924	+	0.64946	NA	Intergenic	Intergenic	-55187	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.005000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-339	chr11	3482068	3482268	+	0.64946	NA	Intergenic	Intergenic	-6059	NM_172791	237625	Mm.100476	NM_172791	ENSMUSG00000034579	Pla2g3	-	phospholipase A2, group III	protein-coding	0.010000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-1973	chr5	108286370	108286570	+	0.64946	NA	Intergenic	MYSERV6-int|LTR|ERVK	17573	NM_026106	13486	Mm.303534	NM_026106	ENSMUSG00000029265	Dr1	1700121L09Rik|Dr1l|NC2|NC2beta	down-regulator of transcription 1	protein-coding	0.000000	0.447761	6(TCTACATTATTCATT,+,0.00),6(TCTACATTATTCATT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2330	chr7	142533129	142533329	+	0.64946	NA	intron (NM_011288, intron 1 of 4)	CpG	197	NM_011288	19935	Mm.12144	NM_011288	ENSMUSG00000037772	Mrpl23	L23mrp|Rpl23|Rpl23l	mitochondrial ribosomal protein L23	protein-coding	0.120000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-2586	chr9	105696154	105696354	+	0.64946	NA	intron (NM_001102607, intron 35 of 36)	intron (NM_001102607, intron 35 of 36)	53259	NM_001081309	75669	Mm.274830	NM_029380	ENSMUSG00000032571	Pik3r4	2210010O15Rik|C730038E05Rik|C85833|D9Ertd418e|Vps15|p150	phosphoinositide-3-kinase regulatory subunit 4	protein-coding	0.010000	0.308458			-38(TTTTTCATAACAATAA,-,0.00),76(GATTTGTTAAGCAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-444	chr6	89475260	89475460	+	0.64946	NA	intron (NM_025351, intron 4 of 7)	Lx8b|LINE|L1	-112747	NM_008881	18844	Mm.3789	NM_008881	ENSMUSG00000030084	Plxna1	2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053	plexin A1	protein-coding	0.010000	0.338308			
Oct4_nocontrol_ChIP_peaks_unique-313	chr2	109913466	109913666	+	0.64946	NA	promoter-TSS (NR_033473)	promoter-TSS (NR_033473)	-247	NR_033473	100038454	Mm.365649	NR_033473	ENSMUSG00000063751	Platr8	Gm13939	pluripotency associated transcript 8	ncRNA	0.030000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-2052	chr6	30229276	30229476	+	0.64946	NA	intron (NM_001169576, intron 3 of 4)	intron (NM_001169576, intron 3 of 4)	14427	NM_001169577	22214	Mm.332967	NM_009459	ENSMUSG00000039159	Ube2h	1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8	ubiquitin-conjugating enzyme E2H	protein-coding	0.005000	0.353234			-96(CCATTGTAATTCAAAT,+,0.00)
merged_common-182	chr11	117654449	117654649	+	0.64946	NA	5' UTR (NM_198022, exon 1 of 22)	5' UTR (NM_198022, exon 1 of 22)	260	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.140000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-331	chr10	127289182	127289382	+	0.64946	NA	promoter-TSS (NM_033072)	promoter-TSS (NM_033072)	-264	NM_001347171	110962	Mm.372826	NM_033072	ENSMUSG00000025409	Mbd6	D10Wsu93e	methyl-CpG binding domain protein 6	protein-coding	0.040000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-1780	chr4	77514459	77514659	+	0.64946	NA	intron (NR_160919, intron 4 of 39)	intron (NR_160919, intron 4 of 39)	697183	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.313433			
ePOU_nocontrol_ChIP_peaks_unique-369	chr11	36566622	36566822	+	0.64946	NA	intron (NM_011856, intron 2 of 28)	intron (NM_011856, intron 2 of 28)	377519	NM_011856	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.005000	0.288557			-46(AATTACATTAGAATGA,-,0.00),-40(ATTAGAATGATCATAA,-,0.00),25(TGATTGTTATTAAAAT,+,0.00),39(ATTAGCATTATTATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2287	chr7	115867777	115867977	+	0.64946	NA	intron (NM_001025559, intron 2 of 15)	intron (NM_001025559, intron 2 of 15)	-21737	NM_001277326	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.015000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-1274	chr19	21637136	21637336	+	0.64946	NA	intron (NM_025423, intron 1 of 3)	intron (NM_025423, intron 1 of 3)	15555	NM_025423	66206	Mm.272430	NM_025423	ENSMUSG00000035171	1110059E24Rik	-	RIKEN cDNA 1110059E24 gene	protein-coding	0.005000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-2180	chr7	16135143	16135343	+	0.64946	NA	intron (NM_148946, intron 2 of 9)	intron (NM_148946, intron 2 of 9)	5417	NM_001347561	110891	Mm.241147	NM_148946	ENSMUSG00000030376	Slc8a2	Ncx2	solute carrier family 8 (sodium/calcium exchanger), member 2	protein-coding	0.020000	0.477612	48(TTTGCATAATTTATT,+,0.00),52(CATAATTTATTCATG,+,0.00),52(CATAATTTATTCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1974	chr5	110107909	110108109	+	0.64946	NA	exon (NM_145147, exon 1 of 10)	exon (NM_145147, exon 1 of 10)	188	NM_145147	107999	Mm.86267	NM_145147	ENSMUSG00000033434	Gtpbp6	AV119224|Pgbpll|pgpl	GTP binding protein 6 (putative)	protein-coding	0.110000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-1759	chr4	54415118	54415318	+	0.64946	NA	Intergenic	MER2|DNA|TcMar-Tigger	-532727	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip|Znf462	zinc finger protein 462	protein-coding	0.000000	0.318408			
ePOU_nocontrol_ChIP_peaks_unique-1174	chr18	28470608	28470808	+	0.64946	NA	Intergenic	Intergenic	-89456	NR_045398	320624	Mm.50107	NR_045398	ENSMUSG00000117473	4930474G06Rik	-	RIKEN cDNA 4930474G06 gene	ncRNA	0.015000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-693	chr13	81265865	81266065	+	0.64946	NA	intron (NM_054053, intron 85 of 89)	intron (NM_054053, intron 85 of 89)	301891	NR_015587	319983	Mm.343027	NR_015587	ENSMUSG00000097098	9330111N05Rik	-	RIKEN cDNA 9330111N05 gene	ncRNA	0.000000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-1294	chr19	32210909	32211109	+	0.64946	NA	promoter-TSS (NM_001168526)	promoter-TSS (NM_001168526)	4	NM_001168526	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.060000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-290	chr10	95044390	95044590	+	0.64946	NA	Intergenic	Intergenic	-99645	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.000000	0.358209			-81(ATTTGCAAACCAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-404	chr11	61174877	61175077	+	0.64946	NA	promoter-TSS (NM_001004143)	promoter-TSS (NM_001004143)	82	NM_001004143	216825	Mm.30602	NM_001004143	ENSMUSG00000042506	Usp22	AI427806	ubiquitin specific peptidase 22	protein-coding	0.115000	0.731343			
ePOU_nocontrol_ChIP_peaks_unique-2418	chr8	79711564	79711764	+	0.64946	NA	promoter-TSS (NM_001357235)	promoter-TSS (NM_001357235)	76	NR_152614	24015	Mm.5831	NM_015751	ENSMUSG00000058355	Abce1	C79080|Oabp|RLI|RNS41|RNS4I|Rnaseli	ATP-binding cassette, sub-family E (OABP), member 1	protein-coding	0.125000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1183	chr18	34093109	34093309	+	0.64946	NA	Intergenic	Intergenic	-86003	NM_013512	13824	Mm.3465	NM_013512	ENSMUSG00000024376	Epb41l4a	Epb4.1l4|Epb4.1l4a|NBL4	erythrocyte membrane protein band 4.1 like 4a	protein-coding	0.015000	0.437811			-96(GCTTTGATATGTTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2080	chr6	50777041	50777241	+	0.64946	NA	intron (NR_045984, intron 2 of 4)	intron (NR_045984, intron 2 of 4)	1026	NR_045984	319981	Mm.131454	NR_045984	ENSMUSG00000107667	C530044C16Rik	-	RIKEN cDNA C530044C16 gene	ncRNA	0.015000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-1961	chr5	100416308	100416508	+	0.64946	NA	promoter-TSS (NM_026969)	promoter-TSS (NM_026969)	-174	NM_001359344	69162	Mm.18634	NM_026969	ENSMUSG00000035325	Sec31a	1810024J13Rik|ABP125|ABP130|AU042160|HSPC275|Sec31l1	Sec31 homolog A (S. cerevisiae)	protein-coding	0.105000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-2263	chr7	96169046	96169246	+	0.64946	NA	Intergenic	Intergenic	-2098	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.000000	0.512438			
ePOU_nocontrol_ChIP_peaks_unique-91	chr1	98084141	98084341	+	0.64946	NA	intron (NM_001357127, intron 1 of 25)	intron (NM_001357127, intron 1 of 25)	11391	NM_013626	18484	Mm.5121	NM_013626	ENSMUSG00000026335	Pam	PHM	peptidylglycine alpha-amidating monooxygenase	protein-coding	0.005000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-267	chr10	79997088	79997288	+	0.64946	NA	intron (NM_013850, intron 1 of 46)	MIR3|SINE|MIR	694	NM_013850	27403	Mm.103351	NM_013850	ENSMUSG00000035722	Abca7	ABCX|Abc51	ATP-binding cassette, sub-family A (ABC1), member 7	protein-coding	0.055000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-176	chr1	184245656	184245856	+	0.64946	NA	Intergenic	Intergenic	211375	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.010000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-1686	chr3	127780243	127780443	+	0.64946	NA	5' UTR (NM_027808, exon 1 of 14)	5' UTR (NM_027808, exon 1 of 14)	184	NM_027808	71481	Mm.158704	NM_027808	ENSMUSG00000028028	Alpk1	8430410J10Rik|LAK	alpha-kinase 1	protein-coding	0.050000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-288	chr10	94198675	94198875	+	0.64946	NA	promoter-TSS (NM_025551)	promoter-TSS (NM_025551)	-260	NM_025551	66414	Mm.27886	NM_025551	ENSMUSG00000020022	Ndufa12	2410011G03Rik|AW112974|CI-B17.2|CIB17.2	NADH:ubiquinone oxidoreductase subunit A12	protein-coding	0.035000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-766	chr14	34660864	34661064	+	0.64946	NA	Intergenic	Intergenic	-7390	NR_029647	723831		NR_029647	ENSMUSG00000094316	Mir297-1	Mir297a-1|Mirn297-1	microRNA 297-1	ncRNA	0.020000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-963	chr16	17530911	17531111	+	0.64946	NA	promoter-TSS (NM_026909)	promoter-TSS (NM_026909)	41	NM_026909	69009	Mm.10174	NM_026909	ENSMUSG00000022760	Thap7	1810004B07Rik	THAP domain containing 7	protein-coding	0.110000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-2332	chr7	144678802	144679002	+	0.64946	NA	intron (NM_178642, intron 1 of 25)	CpG-13775	59690	NM_178642	101772	Mm.26700	NM_178642	ENSMUSG00000031075	Ano1	Tmem16a	anoctamin 1, calcium activated chloride channel	protein-coding	0.135000	0.681592			
merged_common-751	chr7	96670273	96670473	+	0.64946	NA	intron (NM_001310760, intron 6 of 32)	B4A|SINE|B4	131176	NR_045874	791381	Mm.402112	NR_045874	ENSMUSG00000053049	Gm15413	-	predicted gene 15413	ncRNA	0.000000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-548	chr12	55302763	55302963	+	0.64946	NA	5' UTR (NM_025373, exon 1 of 7)	5' UTR (NM_025373, exon 1 of 7)	137	NM_021529	59032	Mm.427307	NM_021529	ENSMUSG00000021022	Ppp2r3c	4930511A21Rik|5730412A08Rik|G4-1|G5pr	protein phosphatase 2, regulatory subunit B'', gamma	protein-coding	0.055000	0.477612			
merged_common-347	chr17	10335404	10335604	+	0.64946	NA	Intergenic	CpG	10902	NR_045461	76634	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.060000	0.587065			
merged_common-290	chr15	33914925	33915125	+	0.64946	NA	Intergenic	Intergenic	-167694	NM_001357925	67154	Mm.130883	NM_026002	ENSMUSG00000022255	Mtdh	2610103J23Rik|3D3|3D3/Lyric|AEG-1|AV353288|D8Bwg1112e|Lyric	metadherin	protein-coding	0.005000	0.378109			-55(ATTTAAAAGAGAAATT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1546	chr3	21866710	21866910	+	0.64946	NA	Intergenic	Intergenic	-209842	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.000000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-1890	chr5	9910897	9911097	+	0.64946	NA	Intergenic	Intergenic	-185645	NM_181850	108069	Mm.318966	NM_181850	ENSMUSG00000003974	Grm3	0710001G23Rik|Gprc1c|mGlu3|mGluR3	glutamate receptor, metabotropic 3	protein-coding	0.000000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-992	chr16	33979869	33980069	+	0.64946	NA	intron (NM_177357, intron 58 of 59)	RLTR25B|LTR|ERVK	-12931	NM_009471	22247	Mm.13145	NM_009471	ENSMUSG00000022814	Umps	1700095D23Rik|AA408257|AL033308|BB164745	uridine monophosphate synthetase	protein-coding	0.005000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-2644	chrX	141876296	141876496	+	0.64946	NA	Intergenic	Intergenic	-151179	NM_010572	16370	Mm.261591	NM_010572	ENSMUSG00000054667	Irs4	IRS-4	insulin receptor substrate 4	protein-coding	0.000000	0.283582			
ePOU_nocontrol_ChIP_peaks_unique-430	chr11	76945539	76945739	+	0.64946	NA	promoter-TSS (NM_178645)	promoter-TSS (NM_178645)	-17	NM_178645	104184	Mm.399785	NM_178645	ENSMUSG00000020840	Blmh	AI035728|Bh|Bmh	bleomycin hydrolase	protein-coding	0.095000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-2248	chr7	83572160	83572360	+	0.64946	NA	Intergenic	Intergenic	-12671	NM_177695	233424	Mm.486619	NM_177695	ENSMUSG00000038540	Tmc3	9030203A06	transmembrane channel-like gene family 3	protein-coding	0.010000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-2037	chr6	15756298	15756498	+	0.64946	NA	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	35737	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.005000	0.388060			13(ATGTAAAAGAGAAAAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2529	chr9	56547527	56547727	+	0.64946	NA	Intergenic	Intergenic	88021	NM_001311076	235402	Mm.246605	NM_181074	ENSMUSG00000049556	Lingo1	4930471K13Rik|AV148400|LERN1|LINGO-1|Lrrn6a|UNQ201	leucine rich repeat and Ig domain containing 1	protein-coding	0.010000	0.522388			
ePOU_nocontrol_ChIP_peaks_unique-2453	chr8	109565733	109565933	+	0.64946	NA	promoter-TSS (NM_175646)	promoter-TSS (NM_175646)	28	NM_178380	64340	Mm.23705	NM_178380	ENSMUSG00000037993	Dhx38	5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16	DEAH (Asp-Glu-Ala-His) box polypeptide 38	protein-coding	0.070000	0.552239			
ePOU_nocontrol_ChIP_peaks_unique-2262	chr7	94174174	94174374	+	0.64946	NA	Intergenic	Intergenic	-990098	NM_001358087	100040298	Mm.260904	NM_001358087		Gm15501	EyeLinc5	predicted pseudogene 15501	protein-coding	0.005000	0.452736			-25(GCATTGTCCTTCAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-181	chr1	187787518	187787718	+	0.64946	NA	intron (NM_001357535, intron 1 of 7)	intron (NM_001357535, intron 1 of 7)	135377	NM_001357535	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.015000	0.432836			-99(TATTTGTAATTTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1701	chr3	138527258	138527458	+	0.64946	NA	promoter-TSS (NM_001313980)	promoter-TSS (NM_001313980)	90	NM_001313980	13684	Mm.3941	NM_007917	ENSMUSG00000028156	Eif4e	EG668879|Eif4e-ps|If4e|eIF-4E	eukaryotic translation initiation factor 4E	protein-coding	0.130000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-1991	chr5	123906986	123907186	+	0.64946	NA	promoter-TSS (NM_026603)	promoter-TSS (NM_026603)	-189	NM_026603	68184	Mm.28549	NM_026603	ENSMUSG00000023106	Denr	1500003K04Rik	density-regulated protein	protein-coding	0.080000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-1993	chr5	124439742	124439942	+	0.64946	NA	promoter-TSS (NM_001310725)	promoter-TSS (NM_001310725)	-88	NM_001310725	67956	Mm.137966	NM_030241	ENSMUSG00000049327	Kmt5a	2410195B05Rik|AA617402|AW536475|PR-SET7|PR/SET07|Setd8	lysine methyltransferase 5A	protein-coding	0.070000	0.641791			
Oct4_nocontrol_ChIP_peaks_unique-221	chr16	4964141	4964341	+	0.64946	NA	promoter-TSS (NR_073370)	promoter-TSS (NR_073370)	-4	NM_028301	72615	Mm.290628	NM_028301	ENSMUSG00000022515	Anks3	2700067D09Rik|C81345|mKIAA1977	ankyrin repeat and sterile alpha motif domain containing 3	protein-coding	0.090000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-2086	chr6	52769818	52770018	+	0.64946	NA	3' UTR (NM_001168277, exon 5 of 5)	3' UTR (NM_001168277, exon 5 of 5)	55753	NM_001355596	52440	Mm.389757	NM_025816	ENSMUSG00000004535	Tax1bp1	1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151	Tax1 (human T cell leukemia virus type I) binding protein 1	protein-coding	0.010000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-1364	chr2	32395847	32396047	+	0.64946	NA	promoter-TSS (NM_133783)	promoter-TSS (NM_133783)	57	NM_133783	96979	Mm.28048	NM_133783	ENSMUSG00000026820	Ptges2	0610038H10Rik|C79137|Gbf1|Mpges2|Pges2	prostaglandin E synthase 2	protein-coding	0.055000	0.532338			
ePOU_nocontrol_ChIP_peaks_unique-479	chr11	115276867	115277067	+	0.64946	NA	promoter-TSS (NM_007997)	promoter-TSS (NM_007997)	2	NM_007997	14149	Mm.4719	NM_007997	ENSMUSG00000018861	Fdxr	AR	ferredoxin reductase	protein-coding	0.055000	0.597015			
merged_common-271	chr14	73525001	73525201	+	0.64946	NA	exon (NM_172527, exon 3 of 5)	exon (NM_172527, exon 3 of 5)	148	NM_001360484	214254	Mm.386852	NM_172527	ENSMUSG00000033405	Nudt15	6530403O17|A730068G11Rik|MTH2	nudix (nucleoside diphosphate linked moiety X)-type motif 15	protein-coding	0.085000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-2128	chr6	99050564	99050764	+	0.64946	NA	intron (NM_001197321, intron 4 of 17)	intron (NM_001197321, intron 4 of 17)	-22366	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.005000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-1628	chr3	89090701	89090901	+	0.64946	NA	promoter-TSS (NM_001083808)	promoter-TSS (NM_001083808)	-770	NM_001083808	72296	Mm.27687	NM_028188	ENSMUSG00000041263	Rusc1	2210403N08Rik|AA408288|NESCA	RUN and SH3 domain containing 1	protein-coding	0.095000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-1177	chr18	31634933	31635133	+	0.64946	NA	promoter-TSS (NM_001357555)	promoter-TSS (NM_001357555)	-95	NM_001357555	269003	Mm.194538	NM_172965	ENSMUSG00000024260	Sap130	2610304F09Rik|6720406D06	Sin3A associated protein	protein-coding	0.090000	0.691542			
Oct4_nocontrol_ChIP_peaks_unique-439	chr6	67190743	67190943	+	0.64946	NA	Intergenic	B3A|SINE|B2	-76136	NM_001113566	66870	Mm.240490	NM_025814	ENSMUSG00000036371	Serbp1	1200009K13Rik|9330147J08Rik|AL022786|Pairbp1	serpine1 mRNA binding protein 1	protein-coding	0.015000	0.348259		-26(TGTACATATGCATG,-,0.00)	-57(TTTTTATTATGTTTAT,+,0.00),-21(ATATGCATGTAAATGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1130	chr17	72836333	72836533	+	0.64946	NA	promoter-TSS (NM_027166)	promoter-TSS (NM_027166)	-195	NM_027166	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	0.090000	0.686567			
Oct4_nocontrol_ChIP_peaks_unique-401	chr4	134327862	134328062	+	0.64946	NA	intron (NM_001039048, intron 8 of 8)	B4A|SINE|B4	12842	NM_001369245	433766	Mm.331961	NM_001039048	ENSMUSG00000028834	Trim63	MuRF1|RF1|Rnf28	tripartite motif-containing 63	protein-coding	0.015000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-2344	chr8	11227550	11227750	+	0.64946	NA	intron (NR_133670, intron 24 of 52)	intron (NR_133670, intron 24 of 52)	-85155	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.015000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-1009	chr16	46497173	46497373	+	0.64946	NA	promoter-TSS (NM_021496)	promoter-TSS (NM_021496)	-306	NM_021495	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.075000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-1062	chr17	15144497	15144697	+	0.64946	NA	Intergenic	Intergenic	96186	NR_046164	328747	Mm.256835	NR_046164	ENSMUSG00000097624	Gm5091	C330048F19	predicted gene 5091	ncRNA	0.005000	0.407960			
merged_common-607	chr4	117210850	117211050	+	0.64946	NA	Intergenic	U5|snRNA|snRNA	-28326	NM_134471	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.020000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-588	chr12	86824195	86824395	+	0.64946	NA	Intergenic	Intergenic	60519	NM_145836	238330	Mm.248358	NM_145836	ENSMUSG00000034168	Irf2bpl	6430527G18Rik|Eap1	interferon regulatory factor 2 binding protein-like	protein-coding	0.030000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-1968	chr5	105519261	105519461	+	0.64946	NA	promoter-TSS (NM_133897)	promoter-TSS (NM_133897)	-110	NM_133897	100604	Mm.319847	NM_133897	ENSMUSG00000054720	Lrrc8c	AD158|AI326115|E430036I04Rik|fad158	leucine rich repeat containing 8 family, member C	protein-coding	0.150000	0.810945			
ePOU_nocontrol_ChIP_peaks_unique-592	chr12	93186068	93186268	+	0.64946	NA	Intergenic	Intergenic	258655	NR_126436	75295	Mm.243878	NR_126436	ENSMUSG00000113164	4930559C10Rik	-	RIKEN cDNA 4930559C10 gene	ncRNA	0.000000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-334	chr10	128669327	128669527	+	0.64946	NA	TTS (NM_173733)	TTS (NM_173733)	4491	NM_173733	211389	Mm.23352	NM_173733	ENSMUSG00000049858	Suox	SO	sulfite oxidase	protein-coding	0.040000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-2400	chr8	70630049	70630249	+	0.64946	NA	exon (NM_001330687, exon 3 of 3)	exon (NM_001330687, exon 3 of 3)	1946	NM_011819	23886	Mm.31325	NM_011819	ENSMUSG00000038508	Gdf15	MIC-1|NAG-1|SBF	growth differentiation factor 15	protein-coding	0.080000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-1188	chr18	35703074	35703274	+	0.64946	NA	promoter-TSS (NM_029669)	promoter-TSS (NM_029669)	-30	NM_029669	76594	Mm.108596	NM_029669	ENSMUSG00000024350	Dnajc18	2700075B01Rik|AU041129	DnaJ heat shock protein family (Hsp40) member C18	protein-coding	0.095000	0.626866			
Oct4_nocontrol_ChIP_peaks_unique-397	chr4	126770310	126770510	+	0.64946	NA	intron (NM_001035526, intron 2 of 23)	L2|LINE|L2	16640	NM_133886	100317	Mm.206206	NM_133886	ENSMUSG00000028830	AU040320	A730047D20Rik|AAVR|Kiaa0319l	expressed sequence AU040320	protein-coding	0.010000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-1721	chr4	13096206	13096406	+	0.64946	NA	Intergenic	Intergenic	189469	NM_173746	208820	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0.005000	0.432836			58(ATCTGAATGTCAATGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-161	chr1	178221217	178221417	+	0.64946	NA	intron (NM_024282, intron 1 of 4)	PB1D10|SINE|Alu	33900	NM_024282	78825	Mm.440132	NM_024282	ENSMUSG00000026502	Desi2	5830417C01Rik|DeSI-2|Fam152a|Pppde1	desumoylating isopeptidase 2	protein-coding	0.000000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-2463	chr8	121652986	121653186	+	0.64946	NA	Intergenic	CpG-14599	-1153	NM_080855	142682	Mm.103202	NM_080855	ENSMUSG00000061410	Zcchc14	AA792890|BDG29	zinc finger, CCHC domain containing 14	protein-coding	0.115000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-1654	chr3	104936420	104936620	+	0.64946	NA	Intergenic	Intergenic	25189	NM_009520	22414	Mm.10740	NM_009520	ENSMUSG00000027840	Wnt2b	Wnt13	wingless-type MMTV integration site family, member 2B	protein-coding	0.005000	0.338308			
ePOU_nocontrol_ChIP_peaks_unique-1810	chr4	103017680	103017880	+	0.64946	NA	TTS (NM_011831)	TTS (NM_011831)	-5815	NR_028391	100473	Mm.393171	NR_028391	ENSMUSG00000085041	BB031773	-	expressed sequence BB031773	ncRNA	0.005000	0.407960			-20(ATTTGTATAAGAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2186	chr7	24399632	24399832	+	0.64946	NA	5' UTR (NM_028047, exon 1 of 14)	5' UTR (NM_028047, exon 1 of 14)	104	NM_028047	71997	Mm.150977	NM_028047	ENSMUSG00000002210	Smg9	1500002O20Rik|AI429693|N28092	smg-9 homolog, nonsense mediated mRNA decay factor (C. elegans)	protein-coding	0.075000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-996	chr16	37994708	37994908	+	0.64946	NA	intron (NM_153394, intron 8 of 9)	intron (NM_153394, intron 8 of 9)	-22515	NR_040565	75175	Mm.399335	NR_040565		4930542C21Rik	-	RIKEN cDNA 4930542C21 gene	ncRNA	0.025000	0.547264			
ePOU_nocontrol_ChIP_peaks_unique-2589	chr9	106159992	106160192	+	0.64946	NA	Intergenic	CpG	-1954	NM_174846	235582	Mm.335420	NM_174846	ENSMUSG00000020258	Glyctk	6230410P16Rik|C430006L12	glycerate kinase	protein-coding	0.055000	0.552239			
Oct4_nocontrol_ChIP_peaks_unique-224	chr16	22178044	22178244	+	0.64946	NA	Intergenic	L1MC4a|LINE|L1	-14845	NM_183029	319765	Mm.489442	NM_183029	ENSMUSG00000033581	Igf2bp2	C330012H03Rik|IMP-2|Imp2|Neilsen	insulin-like growth factor 2 mRNA binding protein 2	protein-coding	0.005000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-266	chr10	79854330	79854530	+	0.64946	NA	promoter-TSS (NM_008956)	promoter-TSS (NM_008956)	-2	NM_001077363	19205	Mm.265610	NM_008956	ENSMUSG00000006498	Ptbp1	AA407203|AL033359|HNRPI|PTB-1|PTB2|PTB3|PTB4|Ptb|pPTB	polypyrimidine tract binding protein 1	protein-coding	0.075000	0.582090			
ePOU_nocontrol_ChIP_peaks_unique-464	chr11	100738238	100738438	+	0.64946	NA	promoter-TSS (NM_001305003)	promoter-TSS (NM_001305003)	-123	NM_024456	19345	Mm.29829	NM_024456	ENSMUSG00000019173	Rab5c	AI326010|Rabl	RAB5C, member RAS oncogene family	protein-coding	0.070000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-201	chr10	19836041	19836241	+	0.64946	NA	Intergenic	Intergenic	15318	NM_029529	76157	Mm.74324	NM_029529	ENSMUSG00000050473	Slc35d3	6230421J19Rik|Frcl1	solute carrier family 35, member D3	protein-coding	0.010000	0.407960			
Oct4_nocontrol_ChIP_peaks_unique-40	chr1	184690001	184690201	+	0.64946	NA	Intergenic	Lx7|LINE|L1	-22396	NR_040627	74971	Mm.410816	NR_040627	ENSMUSG00000092578	4930488B22Rik	-	RIKEN cDNA 4930488B22 gene	ncRNA	0.005000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-985	chr16	29814197	29814397	+	0.64946	NA	Intergenic	Intergenic	164827	NR_037689	328657	Mm.425982	NM_001033403	ENSMUSG00000075286	Gm1968	-	predicted gene 1968	ncRNA	0.055000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-2133	chr6	105517045	105517245	+	0.64946	NA	Intergenic	Intergenic	-24477	NR_040297	100503536	Mm.366960	NR_040297	ENSMUSG00000108237	Gm19757	-	predicted gene, 19757	ncRNA	0.005000	0.303483			15(AAAAGCATAACAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1310	chr19	45363353	45363553	+	0.64946	NA	promoter-TSS (NM_001286466)	promoter-TSS (NM_001286466)	-281	NM_001360126	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.045000	0.517413			
ePOU_nocontrol_ChIP_peaks_unique-2615	chr9	120676970	120677170	+	0.64946	NA	Intergenic	Intergenic	99739	NR_073359	76100	Mm.48212	NR_073359	ENSMUSG00000052658	5830454E08Rik	-	RIKEN cDNA 5830454E08 gene	ncRNA	0.020000	0.398010			18(ATTTAAATGTTAATGA,-,0.00)
merged_common-674	chr5	142367493	142367693	+	0.64946	NA	Intergenic	CpG	-33904	NM_199068	17425	Mm.24214	NM_010812	ENSMUSG00000056493	Foxk1	A630048H08Rik|AI463295|Gm10868|Mnf	forkhead box K1	protein-coding	0.110000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-2044	chr6	21593801	21594001	+	0.64946	NA	intron (NM_019697, intron 1 of 5)	intron (NM_019697, intron 1 of 5)	258266	NM_001363814	269831	Mm.21950	NM_173007	ENSMUSG00000029669	Tspan12	9030619E17|AI426782|AI663988|AW111457|Tm4sf12	tetraspanin 12	protein-coding	0.000000	0.338308			
merged_common-544	chr3	88531541	88531741	+	0.64946	NA	promoter-TSS (NM_001029890)	promoter-TSS (NM_001029890)	-305	NM_001029890	72640	Mm.275154	NM_001029890	ENSMUSG00000074480	Mex3a	2700083E18Rik|Gm411|Rkhd4	mex3 RNA binding family member A	protein-coding	0.090000	0.666667			6(ATTACCATAAGAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2061	chr6	37825408	37825608	+	0.64946	NA	Intergenic	RLTR13D4|LTR|ERVK	-45303	NM_145076	21848	Mm.41063	NM_145076	ENSMUSG00000029833	Trim24	A130082H20Rik|AI447469|D430004I05Rik|TIF1|TIF1-alpha|TIF1alpha|Tif1a	tripartite motif-containing 24	protein-coding	0.005000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-139	chr1	160219619	160219819	+	0.64946	NA	3' UTR (NM_001038621, exon 9 of 9)	3' UTR (NM_001038621, exon 9 of 9)	-6827	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.005000	0.383085	-10(CATGCATTATGCAAA,+,0.00),-10(CATGCATTATGCAAA,-,0.00)		
merged_common-810	chr8	111548063	111548263	+	0.64946	NA	intron (NM_001363489, intron 1 of 4)	L1_Rod|LINE|L1	9820	NM_001363489	170737	Mm.271578	NM_133206	ENSMUSG00000033545	Znrf1	B830022L21Rik|Rnf42|Zrfp1|nin283	zinc and ring finger 1	protein-coding	0.010000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-1094	chr17	34647099	34647299	+	0.64946	NA	promoter-TSS (NM_017406)	promoter-TSS (NM_017406)	53	NM_017406	12915	Mm.4068	NM_017406	ENSMUSG00000015461	Atf6b	AA617266|ATF6beta|Creb-rp|Crebl1	activating transcription factor 6 beta	protein-coding	0.090000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-1541	chr3	19216292	19216492	+	0.64946	NA	intron (NR_045575, intron 6 of 8)	intron (NR_045575, intron 6 of 8)	28097	NM_001356295	67472	Mm.45125	NM_026182	ENSMUSG00000027601	Mtfr1	1300002C08Rik|1700080D04Rik|2810026O10Rik|4930579E05Rik|Chppr|Fam54a2	mitochondrial fission regulator 1	protein-coding	0.010000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-793	chr14	66868688	66868888	+	0.64946	NA	promoter-TSS (NM_009955)	promoter-TSS (NM_009955)	-62	NR_157372	432870	Mm.425890	NM_001034881		Gm5464	EG432870	predicted gene 5464	ncRNA	0.115000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-1260	chr19	6909954	6910154	+	0.64946	NA	promoter-TSS (NM_001358444)	promoter-TSS (NM_001358444)	52	NM_001358444	54683	Mm.279782	NM_012021	ENSMUSG00000024953	Prdx5	AOEB166|AOPP|PLP|Pmp20|Prdx6|PrxV	peroxiredoxin 5	protein-coding	0.090000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-1223	chr18	67775042	67775242	+	0.64946	NA	TTS (NR_045376)	TTS (NR_045376)	266	NM_028112	72124	Mm.307315	NM_028112	ENSMUSG00000079614	Seh1l	2610007A16Rik|AW540070|SEC13L|SEH1A|SEH1B|Seh1	SEH1-like (S. cerevisiae	protein-coding	0.150000	0.721393			
merged_common-647	chr5	80675514	80675714	+	0.64946	NA	Intergenic	Intergenic	-344957	NM_001347369	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.000000	0.258706			-31(ATTTACATAACAATGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1943	chr5	74535612	74535812	+	0.64946	NA	exon (NM_024183, exon 1 of 17)	exon (NM_024183, exon 1 of 17)	230	NM_001159573	66899	Mm.272468	NM_024183	ENSMUSG00000029227	Fip1l1	1300019H17Rik|Rje	FIP1 like 1 (S. cerevisiae)	protein-coding	0.080000	0.656716			
merged_common-553	chr3	103914402	103914602	+	0.64946	NA	exon (NM_001356558, exon 1 of 6)	exon (NM_001356558, exon 1 of 6)	382	NM_001356557	229675	Mm.29366	NM_172684	ENSMUSG00000044098	Rsbn1	C230004D03Rik|E330004N01|KDM9|Rosbin|Rsbn|Rsbp|mKIAA3002	rosbin, round spermatid basic protein 1	protein-coding	0.105000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-2320	chr7	134619709	134619909	+	0.64946	NA	Intergenic	Intergenic	-50878	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0.005000	0.502488			
ePOU_nocontrol_ChIP_peaks_unique-477	chr11	108410268	108410468	+	0.64946	NA	intron (NM_013475, intron 6 of 7)	intron (NM_013475, intron 6 of 7)	-14898	NM_029606	76380	Mm.344071	NM_029586	ENSMUSG00000020728	Cep112	1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco	centrosomal protein 112	protein-coding	0.015000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-667	chr13	49362453	49362653	+	0.64946	NA	intron (NM_029791, intron 1 of 7)	intron (NM_029791, intron 1 of 7)	21004	NM_029791	76895	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0.025000	0.567164			
Oct4_nocontrol_ChIP_peaks_unique-16	chr1	84839453	84839653	+	0.64946	NA	promoter-TSS (NM_025386)	promoter-TSS (NM_025386)	-249	NM_133975	14897	Mm.209265	NM_133975	ENSMUSG00000026219	Trip12	1110036I07Rik|6720416K24Rik|AA410158|Gtl6|TRIP-12	thyroid hormone receptor interactor 12	protein-coding	0.070000	0.636816			
merged_common-652	chr5	92774717	92774917	+	0.64946	NA	intron (NM_015756, intron 1 of 10)	intron (NM_015756, intron 1 of 10)	13745	NR_035487	100316841		NR_035487	ENSMUSG00000089268	Mir1961	mmu-mir-1961	microRNA 1961	ncRNA	0.005000	0.407960			-26(AAATTATTATGTTAAT,+,0.00)
merged_common-434	chr19	34959310	34959510	+	0.64946	NA	intron (NM_001362434, intron 24 of 31)	intron (NM_001362434, intron 24 of 31)	-5986	NR_035473	100316775		NR_035473	ENSMUSG00000089151	Mir1950	mmu-mir-1950	microRNA 1950	ncRNA	0.015000	0.318408			
ePOU_nocontrol_ChIP_peaks_unique-1529	chr3	7366424	7366624	+	0.64946	NA	promoter-TSS (NM_008862)	promoter-TSS (NM_008862)	-80	NM_008862	18767	Mm.3193	NM_008862	ENSMUSG00000027499	Pkia	AI415001|PKIalpha	protein kinase inhibitor, alpha	protein-coding	0.085000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-351	chr11	19925375	19925575	+	0.64946	NA	intron (NM_033523, intron 1 of 5)	CpG	1033	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related EVH1 domain containing 2	protein-coding	0.130000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-65	chr1	80169982	80170182	+	0.64946	NA	Intergenic	Intergenic	43862	NM_173425	241128	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0.005000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-1254	chr19	5001956	5002156	+	0.64946	NA	Intergenic	Intergenic	-12085	NM_153553	225872	Mm.287867	NM_153553	ENSMUSG00000045903	Npas4	LE-PAS|Nxf	neuronal PAS domain protein 4	protein-coding	0.050000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-1606	chr3	72658662	72658862	+	0.64946	NA	Intergenic	Intergenic	309101	NM_001081137	69983	Mm.261054	NM_001081137	ENSMUSG00000027790	Sis	2010204N08Rik|SI|Si-s	sucrase isomaltase (alpha-glucosidase)	protein-coding	0.000000	0.358209			-58(GCATTGTTATGCACAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-195	chr10	12868576	12868776	+	0.64946	NA	Intergenic	Intergenic	-6941	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.040000	0.601990	57(CTTCAATAATGCATG,+,0.00),57(CTTCAATAATGCATG,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-398	chr4	132212100	132212300	+	0.64946	NA	promoter-TSS (NM_145393)	promoter-TSS (NM_145393)	56	NM_145393	213541	Mm.23998	NM_145393	ENSMUSG00000040025	Ythdf2	9430020E02Rik|HGRG8|NY-REN-2	YTH N6-methyladenosine RNA binding protein 2	protein-coding	0.170000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-1638	chr3	95434064	95434264	+	0.64946	NA	promoter-TSS (NM_001037737)	promoter-TSS (NM_001037737)	-226	NM_001037737	11863	Mm.250265	NM_009709	ENSMUSG00000015522	Arnt	D3Ertd557e|Drnt|ESTM42|Hif1b|W08714|bHLHe2|mKIAA4051	aryl hydrocarbon receptor nuclear translocator	protein-coding	0.040000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-769	chr14	45219292	45219492	+	0.64946	NA	promoter-TSS (NM_001310534)	promoter-TSS (NM_001310534)	33	NM_001310534	70561	Mm.28129	NM_172597	ENSMUSG00000021830	Txndc16	5730420B22Rik|C77647	thioredoxin domain containing 16	protein-coding	0.080000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-1091	chr17	32364366	32364566	+	0.64946	NA	intron (NR_033525, intron 4 of 10)	intron (NR_033525, intron 4 of 10)	-13889	NM_017476	54194	Mm.281005	NM_017476	ENSMUSG00000002625	Akap8l	HAP95|Nakap95	A kinase (PRKA) anchor protein 8-like	protein-coding	0.165000	0.781095			
ePOU_nocontrol_ChIP_peaks_unique-2200	chr7	29983622	29983822	+	0.64946	NA	promoter-TSS (NM_001167873)	promoter-TSS (NM_001167873)	-233	NM_001033355	243905	Mm.322432	NM_001033355	ENSMUSG00000074221	Zfp568	C80731|Gm1691|Znf568|chato	zinc finger protein 568	protein-coding	0.085000	0.651741			
Oct4_nocontrol_ChIP_peaks_unique-418	chr5	67607936	67608136	+	0.64946	NA	5' UTR (NM_001033415, exon 1 of 2)	5' UTR (NM_001033415, exon 1 of 2)	153	NM_001033415	330096	Mm.442747	NM_001033415	ENSMUSG00000050010	Shisa3	D830007B15Rik	shisa family member 3	protein-coding	0.095000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-830	chr14	120395732	120395932	+	0.64946	NA	intron (NM_001360380, intron 6 of 7)	intron (NM_001360380, intron 6 of 7)	-82629	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.020000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-1204	chr18	53327837	53328037	+	0.64946	NA	intron (NM_029394, intron 2 of 6)	intron (NM_029394, intron 2 of 6)	82312	NM_029394	69226	Mm.32414	NM_029394	ENSMUSG00000024535	Snx24	2810011K15Rik|5730433I16Rik|AI451341	sorting nexing 24	protein-coding	0.000000	0.373134			85(ATTAAAAAAACAGAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-973	chr16	22876801	22877001	+	0.64946	NA	intron (NR_110508, intron 3 of 3)	intron (NR_110508, intron 3 of 3)	-15114	NM_013465	11625	Mm.197554	NM_013465	ENSMUSG00000022868	Ahsg	-	alpha-2-HS-glycoprotein	protein-coding	0.010000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-1616	chr3	84814238	84814438	+	0.64946	NA	Intergenic	CpG	-1239	NM_001177773	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.110000	0.706468			
merged_common-365	chr17	35591034	35591234	+	0.64946	NA	Intergenic	Intergenic	23649	NM_175148	69542	Mm.265291	NM_175148	ENSMUSG00000039269	2300002M23Rik	Stg|emprin	RIKEN cDNA 2300002M23 gene	protein-coding	0.010000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-418	chr11	67218206	67218406	+	0.64946	NA	intron (NM_030679, intron 30 of 39)	intron (NM_030679, intron 30 of 39)	18204	NM_030679	17879	Mm.477065	NM_030679	ENSMUSG00000056328	Myh1	A530084A17Rik|IId|IId/x|MHC-2X/D|MHC2X/D|MYHC-IIX|MdMs|MyHC-IId/x|MyHC-IIx/d|Myhs-f|Myhs-f2|Myhsf2	myosin, heavy polypeptide 1, skeletal muscle, adult	protein-coding	0.010000	0.373134			69(ATATGCAAAAATATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2626	chrX	20075241	20075441	+	0.64946	NA	intron (NM_021715, intron 1 of 1)	L1MA4|LINE|L1	15771	NM_021715	60322	Mm.44827	NM_021715	ENSMUSG00000037347	Chst7	2600013M07Rik|C6ST-2|GST5|Gn6st-4|glcNAc6ST-4	carbohydrate (N-acetylglucosamino) sulfotransferase 7	protein-coding	0.000000	0.348259			-22(TCTTTCTTATGCAGAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1203	chr18	53066937	53067137	+	0.64946	NA	Intergenic	Intergenic	-109255	NM_026386	67804	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.025000	0.402985	-29(TTTGAATTATGCATA,+,0.00),-29(TTTGAATTATGCATA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-611	chr12	105962159	105962359	+	0.64946	NA	Intergenic	Intergenic	-48004	NM_001029844	22367	Mm.2981	NM_011705	ENSMUSG00000021115	Vrk1	51PK	vaccinia related kinase 1	protein-coding	0.030000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-1171	chr18	23954608	23954808	+	0.64946	NA	promoter-TSS (NM_027007)	promoter-TSS (NM_027007)	20	NM_027007	69256	Mm.218343	NM_027007	ENSMUSG00000024276	Zfp397	2810411K16Rik|6720480F11Rik|AI461664	zinc finger protein 397	protein-coding	0.125000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-899	chr15	76788905	76789105	+	0.64946	NA	intron (NM_198420, intron 1 of 10)	intron (NM_198420, intron 1 of 10)	29161	NM_001168288	223666	Mm.322931	NM_198420	ENSMUSG00000033697	Arhgap39	9530053N22|AI843066|D15Wsu169e|Kiaa1688|Porf-2	Rho GTPase activating protein 39	protein-coding	0.000000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-441	chr11	84095335	84095535	+	0.64946	NA	intron (NM_172562, intron 8 of 15)	intron (NM_172562, intron 8 of 15)	-27078	NM_019819	56405	Mm.240885	NM_019819	ENSMUSG00000018648	Dusp14	1110014C10Rik|2310042C07Rik|D11Ertd395e|MKP-L|Mkp6	dual specificity phosphatase 14	protein-coding	0.010000	0.373134		23(TTTGAATATTCATT,+,0.00),23(TTTGAATATTCATT,-,0.00)	-14(ATTAAAAAAAAAATAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1534	chr3	9556162	9556362	+	0.64946	NA	intron (NM_133218, intron 2 of 8)	intron (NM_133218, intron 2 of 8)	53823	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.005000	0.373134			83(GTTAGTAAGACAAAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-159	chr1	175692723	175692923	+	0.64946	NA	promoter-TSS (NM_010098)	promoter-TSS (NM_010098)	-191	NM_010098	13603	Mm.32744	NM_010098	ENSMUSG00000026525	Opn3	ERO|Ecpn	opsin 3	protein-coding	0.065000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-100	chr1	128082314	128082514	+	0.64946	NA	intron (NM_001285945, intron 2 of 20)	L1MA4|LINE|L1	20057	NM_027678	226409	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.015000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-529	chr12	36358793	36358993	+	0.64946	NA	Intergenic	Intergenic	-22557	NM_001289502	75847	Mm.261764	NM_178629	ENSMUSG00000043153	Crppa	4930579E17Rik|AV040780|Ispd	CDP-L-ribitol pyrophosphorylase A	protein-coding	0.010000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-1405	chr2	79814808	79815008	+	0.64946	NA	intron (NR_110979, intron 4 of 4)	intron (NR_110979, intron 4 of 4)	93491	NM_001009979	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.005000	0.363184		-41(CATAAATATGCATA,+,0.00),-41(CATAAATATGCATA,-,0.00)	-46(TTTTGCATAAATATGC,-,0.00),-36(ATATGCATAAGTGAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2558	chr9	77917329	77917529	+	0.64946	NA	promoter-TSS (NM_134255)	promoter-TSS (NM_134255)	64	NM_134255	68801	Mm.430736	NM_134255	ENSMUSG00000032349	Elovl5	1110059L23Rik|AI747313|AU043003|HELO1	ELOVL family member 5, elongation of long chain fatty acids (yeast)	protein-coding	0.110000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-314	chr10	114854896	114855096	+	0.64946	NA	Intergenic	Intergenic	53270	NR_155864	102633245		NR_155864		Gm15723	-	predicted gene 15723	ncRNA	0.000000	0.323383		-7(TATGAATATGTAAA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-35	chr1	55570142	55570342	+	0.64946	NA	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	164296	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.010000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-2398	chr8	70439645	70439845	+	0.64946	NA	promoter-TSS (NM_001004062)	promoter-TSS (NM_001004062)	-172	NM_001004062	382056	Mm.227767	NM_001004062	ENSMUSG00000003575	Crtc1	AI413414|Mect1|R74955|TORC1|mKIAA0616	CREB regulated transcription coactivator 1	protein-coding	0.140000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-2208	chr7	36690616	36690816	+	0.64946	NA	Intergenic	Intergenic	-7402	NM_172298	243931	Mm.44141	NM_172298	ENSMUSG00000021217	Tshz3	A630038G13Rik|Tsh3|Zfp537|mKIAA1474|teashirt3	teashirt zinc finger family member 3	protein-coding	0.055000	0.616915			35(AATTTATCATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1399	chr2	75246279	75246479	+	0.64946	NA	Intergenic	Intergenic	197800	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	0.025000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-2602	chr9	112060940	112061140	+	0.64946	NA	Intergenic	Intergenic	57671	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.005000	0.303483			
ePOU_nocontrol_ChIP_peaks_unique-2479	chr9	7995948	7996148	+	0.64946	NA	intron (NM_001171147, intron 2 of 8)	ID_B1|SINE|B4	8548	NM_001171147	22601	Mm.221992	NM_009534	ENSMUSG00000053110	Yap1	AI325207|Yap|Yap65|Yki|Yorkie	yes-associated protein 1	protein-coding	0.010000	0.482587			
Oct4_nocontrol_ChIP_peaks_unique-263	chr18	59274628	59274828	+	0.64946	NA	intron (NM_001081328, intron 2 of 2)	intron (NM_001081328, intron 2 of 2)	99388	NM_001081328	78923	Mm.84007	NM_001081328	ENSMUSG00000058152	Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding	0.000000	0.348259			-22(ATTTGAATGAGTTTGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-355	chr11	22982063	22982263	+	0.64946	NA	exon (NM_144514, exon 1 of 3)	exon (NM_144514, exon 1 of 3)	121	NM_144514	17846	Mm.259903	NM_144514	ENSMUSG00000051355	Commd1	AI256843|Murr1|U2/Mu	COMM domain containing 1	protein-coding	0.075000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-2520	chr9	51305496	51305696	+	0.64946	NA	intron (NM_027217, intron 2 of 4)	AT_rich|Low_complexity|Low_complexity	23321	NM_027217	69809	Mm.75315	NM_027217	ENSMUSG00000036027	1810046K07Rik	-	RIKEN cDNA 1810046K07 gene	protein-coding	0.005000	0.398010			0(TTATTATTATTTAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1045	chr17	5748287	5748487	+	0.64946	NA	intron (NM_146073, intron 8 of 8)	intron (NM_146073, intron 8 of 8)	-50270	NR_045081	78512	Mm.23696	NR_045079	ENSMUSG00000096965	3300005D01Rik	-	RIKEN cDNA 3300005D01 gene	ncRNA	0.015000	0.353234			-83(TCTTTATCATTTAAAC,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2388	chr8	56172096	56172296	+	0.64946	NA	Intergenic	L1ME2|LINE|L1	-122356	NM_008278	15446	Mm.18832	NM_008278	ENSMUSG00000031613	Hpgd	15-PGDH|AV026552	hydroxyprostaglandin dehydrogenase 15 (NAD)	protein-coding	0.005000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-2324	chr7	139359753	139359953	+	0.64946	NA	Intergenic	ID4_|SINE|ID	-29256	NM_001127363	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.005000	0.432836			25(TCTTAGCATTGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1526	chr2	181287873	181288073	+	0.64946	NA	promoter-TSS (NM_198169)	promoter-TSS (NM_198169)	-7	NM_198169	229004	Mm.220423	NM_198169	ENSMUSG00000038705	Gmeb2	AI839884	glucocorticoid modulatory element binding protein 2	protein-coding	0.170000	0.786070			
ePOU_nocontrol_ChIP_peaks_unique-492	chr11	118290185	118290385	+	0.64946	NA	promoter-TSS (NM_001033528)	promoter-TSS (NM_001033528)	-41	NM_001033528	72344	Mm.232293	NM_001033528	ENSMUSG00000033909	Usp36	2700002L06Rik|mKIAA1453	ubiquitin specific peptidase 36	protein-coding	0.110000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-123	chr1	150845040	150845240	+	0.64946	NA	intron (NM_001024720, intron 4 of 106)	intron (NM_001024720, intron 4 of 106)	148295	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.000000	0.348259			-41(ACATTGTTTTTCAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-822	chr14	105127869	105128069	+	0.64946	NA	intron (NM_001368684, intron 18 of 21)	intron (NM_001368684, intron 18 of 21)	49345	NM_134077	74213	Mm.124957	NM_134077	ENSMUSG00000022119	Rbm26	1700009P03Rik|AI447318|C230097K14Rik|C86225|MLZ-393|Pro1777|Se70-2	RNA binding motif protein 26	protein-coding	0.005000	0.358209			-93(ATTTTCTCTTTTAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2553	chr9	71959666	71959866	+	0.64946	NA	intron (NM_001253862, intron 5 of 19)	intron (NM_001253862, intron 5 of 19)	-63670	NM_001253864	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.010000	0.393035			9(GTTTCCATGACAATAA,-,0.00)
merged_common-695	chr6	47650996	47651196	+	0.64946	NA	Intergenic	(CAA)n|Simple_repeat|Simple_repeat	3998	NR_002841	19799		NR_002841		Rn4.5s	-	4.5S RNA	rRNA	0.040000	0.552239			
ePOU_nocontrol_ChIP_peaks_unique-2189	chr7	25316630	25316830	+	0.64946	NA	promoter-TSS (NM_001160400)	promoter-TSS (NM_001160400)	-434	NM_001160400	269878	Mm.38527	NM_001160400	ENSMUSG00000045039	Megf8	AW049492|Egfl4|b2b1702.2Clo|b2b1702Clo|b2b288Clo|m687Ddg|mKIAA0817	multiple EGF-like-domains 8	protein-coding	0.065000	0.542289			
ePOU_nocontrol_ChIP_peaks_unique-1909	chr5	31698322	31698522	+	0.64946	NA	promoter-TSS (NM_153196)	promoter-TSS (NM_153196)	372	NM_181281	107976	Mm.482126	NM_144541	ENSMUSG00000052139	Babam2	6030405P19Rik|AI429776|B830038C02Rik|Bre	BRISC and BRCA1 A complex member 2	protein-coding	0.035000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-241	chr10	60162266	60162466	+	0.64946	NA	Intergenic	LTRIS2|LTR|ERV1	35590	NR_105871	102465546		NR_105871	ENSMUSG00000105468	Mir6906	mmu-mir-6906	microRNA 6906	ncRNA	0.010000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-2207	chr7	36095700	36095900	+	0.64946	NA	Intergenic	Intergenic	-292811	NM_177739	668501	Mm.286296	NM_177739	ENSMUSG00000044452	Zfp507	1810022O10Rik|A230056M16Rik|AL024009|AU021817|BB105092|Gm480|Znf507|mKIAA1084	zinc finger protein 507	protein-coding	0.015000	0.437811			28(GTTAACATAACAATCT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-811	chr14	86149141	86149341	+	0.64946	NA	Intergenic	Intergenic	-96729	NR_040457	75155	Mm.399239	NR_040457	ENSMUSG00000115271	4930529K09Rik	4930507G21Rik	RIKEN cDNA 4930529K09 gene	ncRNA	0.005000	0.258706			-27(ATTTAAATAACAATAG,-,0.00)
merged_common-321	chr16	18876797	18876997	+	0.64946	NA	promoter-TSS (NM_010922)	promoter-TSS (NM_010922)	147	NM_010435	15260	Mm.15694	NM_010435	ENSMUSG00000022702	Hira	AA138857|D16Ertd95e|Gm15797|N28177|Tuple1	histone cell cycle regulator	protein-coding	0.085000	0.582090			
ePOU_nocontrol_ChIP_peaks_unique-1058	chr17	12156829	12157029	+	0.64946	NA	intron (NM_026644, intron 2 of 8)	intron (NM_026644, intron 2 of 8)	37645	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.010000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-414	chr11	64183511	64183711	+	0.64946	NA	Intergenic	Intergenic	104127	NR_033780	66456	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	0.000000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-782	chr14	55015143	55015343	+	0.64946	NA	promoter-TSS (NM_026890)	promoter-TSS (NM_026890)	-211	NM_026890	68966	Mm.21214	NM_026890	ENSMUSG00000022204	Ngdn	1500001L15Rik|Ngd|neuroguidin	neuroguidin, EIF4E binding protein	protein-coding	0.045000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-585	chr12	82737041	82737241	+	0.64946	NA	intron (NM_015812, intron 2 of 16)	intron (NM_015812, intron 2 of 16)	119642	NM_001282061	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.010000	0.393035			-4(GCTTTGTCTTGGAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1955	chr5	92897701	92897901	+	0.64946	NA	promoter-TSS (NM_001077596)	promoter-TSS (NM_001077596)	-192	NM_001077596	27428	Mm.46014	NM_015756	ENSMUSG00000029381	Shroom3	AL022960|D5Ertd287e|Shrm|Shrm3	shroom family member 3	protein-coding	0.065000	0.577114			63(CTATTGACATGCAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-267	chr18	73754343	73754543	+	0.64946	NA	promoter-TSS (NM_053255)	promoter-TSS (NM_053255)	36	NM_053255	114615	Mm.50642	NM_053255	ENSMUSG00000036941	Elac1	2610018O07Rik|8430417G19Rik	elaC ribonuclease Z 1	protein-coding	0.160000	0.800995			
ePOU_nocontrol_ChIP_peaks_unique-487	chr11	116138768	116138968	+	0.64946	NA	promoter-TSS (NM_024177)	promoter-TSS (NM_024177)	0	NM_024177	60441	Mm.29974	NM_024177	ENSMUSG00000020775	Mrpl38	1110036N21Rik|4733401F03Rik|MRP-L3|R75240|Rpml3	mitochondrial ribosomal protein L38	protein-coding	0.105000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-597	chr12	97779516	97779716	+	0.64946	NA	Intergenic	Intergenic	479843	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.010000	0.333333	-96(AATGCATAATTCATT,+,0.00),-96(AATGCATAATTCATT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2212	chr7	39552610	39552810	+	0.64946	NA	Intergenic	CpG	34944	NM_001004139	70227	Mm.333800	NM_001004139	ENSMUSG00000068959	Zfp619	3000002G13Rik	zinc finger protein 619	protein-coding	0.100000	0.736318			
ePOU_nocontrol_ChIP_peaks_unique-2	chr1	4934175	4934375	+	0.64946	NA	intron (NM_001177795, intron 2 of 5)	RLTR18B|LTR|ERVK	75947	NM_001159751	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.000000	0.373134			5(CTTTGCAAAAGACAAG,-,0.00),55(GCTTTGTTGTGATAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1175	chr18	30087133	30087333	+	0.64946	NA	Intergenic	Intergenic	-185632	NR_151699	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.010000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-2640	chrX	109112835	109113035	+	0.64946	NA	intron (NM_019989, intron 1 of 3)	MER113A|DNA|hAT-Charlie	17528	NM_019989	56726	Mm.260760	NM_019989	ENSMUSG00000031246	Sh3bgrl	1190008F14Rik	SH3-binding domain glutamic acid-rich protein like	protein-coding	0.005000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-2005	chr5	136136027	136136227	+	0.64946	NA	promoter-TSS (NM_001347492)	promoter-TSS (NM_001347492)	-18	NM_001359414	72041	Mm.294725	NM_028070	ENSMUSG00000039754	Alkbh4	2010004B12Rik|Abj4	alkB homolog 4, lysine demethylase	protein-coding	0.100000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-2314	chr7	127875614	127875814	+	0.64946	NA	promoter-TSS (NM_001362191)	promoter-TSS (NM_001362191)	-72	NM_001362191	244219	Mm.207872	NM_146259	ENSMUSG00000049728	Zfp668	BC030314|E130018B19Rik|Znf668	zinc finger protein 668	protein-coding	0.095000	0.666667			
Oct4_nocontrol_ChIP_peaks_unique-116	chr12	41161393	41161593	+	0.64946	NA	intron (NM_053122, intron 4 of 6)	ID4|SINE|ID	137403	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.000000	0.432836		-75(TATAAATATGCAAA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2426	chr8	84687669	84687869	+	0.64946	NA	promoter-TSS (NM_025788)	promoter-TSS (NM_025788)	93	NM_025788	66830	Mm.289698	NM_025788	ENSMUSG00000001910	Nacc1	2010001H03Rik|4930511N13Rik|Btbd14b|Nac1	nucleus accumbens associated 1, BEN and BTB (POZ) domain containing	protein-coding	0.135000	0.805970			
Oct4_nocontrol_ChIP_peaks_unique-525	chr8	123254230	123254430	+	0.64946	NA	promoter-TSS (NM_028200)	promoter-TSS (NM_028200)	-108	NM_001310661	72325	Mm.276193	NM_028200	ENSMUSG00000001062	Vps9d1	1300018I17Rik|2410004N05Rik|5DOS1|Vsp9d1	VPS9 domain containing 1	protein-coding	0.115000	0.726368			
merged_common-470	chr2	57716742	57716942	+	0.64946	NA	Intergenic	Intergenic	-281313	NM_172855	241391	Mm.484118	NM_172855	ENSMUSG00000026828	Galnt5	4832424J23	polypeptide N-acetylgalactosaminyltransferase 5	protein-coding	0.005000	0.402985			
Oct4_nocontrol_ChIP_peaks_unique-19	chr1	87755967	87756167	+	0.64946	NA	promoter-TSS (NM_001205391)	promoter-TSS (NM_001205391)	56	NM_001205392	77040	Mm.272972	NM_029846	ENSMUSG00000026289	Atg16l1	1500009K01Rik|Apg16l|Atg16l|WDR30	autophagy related 16-like 1 (S. cerevisiae)	protein-coding	0.105000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-39	chr1	57847685	57847885	+	0.64946	NA	intron (NM_001164566, intron 1 of 11)	intron (NM_001164566, intron 1 of 11)	2214	NM_001164566	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.000000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-2136	chr6	108709780	108709980	+	0.64946	NA	Intergenic	Intergenic	-48946	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.020000	0.522388			
ePOU_nocontrol_ChIP_peaks_unique-745	chr14	12102544	12102744	+	0.64946	NA	intron (NM_008981, intron 6 of 29)	intron (NM_008981, intron 6 of 29)	-87299	NM_001347593	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.005000	0.308458	-33(CATGCATTATTCATT,+,0.00),-33(CATGCATTATTCATT,-,0.00)		-12(ATTTGAATAACTTTGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-174	chr1	182528336	182528536	+	0.64946	NA	Intergenic	Intergenic	-10826	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.015000	0.567164			
merged_common-671	chr5	138171434	138171634	+	0.64946	NA	promoter-TSS (NM_021392)	promoter-TSS (NM_021392)	-268	NM_001356576	17220	Mm.378965	NM_008568	ENSMUSG00000029730	Mcm7	AI747533|Mcmd7|mCDC47	minichromosome maintenance complex component 7	protein-coding	0.050000	0.557214			
Oct4_nocontrol_ChIP_peaks_unique-84	chr11	63350236	63350436	+	0.64946	NA	Intergenic	Intergenic	217533	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.010000	0.422886			28(TCTTTGTTATTTAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-415	chr5	46354619	46354819	+	0.64946	NA	Intergenic	Intergenic	-422310	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	0.000000	0.308458		29(TATGCATATTTAAC,-,0.00)	22(TTGTTATTATGCATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-776	chr14	49191757	49191957	+	0.64946	NA	TTS (NM_027492)	TTS (NM_027492)	19611	NM_027492	70646	Mm.275688	NM_027492	ENSMUSG00000036282	Naa30	4930487N19Rik|5730533P17Rik|AI447922|AW322455|Nat12	N(alpha)-acetyltransferase 30, NatC catalytic subunit	protein-coding	0.000000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-2465	chr8	121907538	121907738	+	0.64946	NA	promoter-TSS (NM_011404)	promoter-TSS (NM_011404)	48	NM_011404	20539	Mm.22374	NM_011404	ENSMUSG00000040010	Slc7a5	4F2LC|D0H16S474E|LAT1|TA1	solute carrier family 7 (cationic amino acid transporter, y+ system), member 5	protein-coding	0.185000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-1247	chr18	84081088	84081288	+	0.64946	NA	intron (NM_001364993, intron 1 of 1)	intron (NM_001364993, intron 1 of 1)	5277	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|teashirt1	teashirt zinc finger family member 1	protein-coding	0.010000	0.268657			3(ATTAAAAAAAAAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-752	chr14	20891945	20892145	+	0.64946	NA	Intergenic	Intergenic	-37353	NM_009502	22330	Mm.279361	NM_009502	ENSMUSG00000021823	Vcl	9430097D22|AA571387|AI462105|AW545629	vinculin	protein-coding	0.005000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-2191	chr7	27159911	27160111	+	0.64946	NA	intron (NM_053208, intron 3 of 5)	intron (NM_053208, intron 3 of 5)	5717	NM_001357767	112406	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.020000	0.577114			57(ACATTGCCATGGAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2067	chr6	42264902	42265102	+	0.64946	NA	promoter-TSS (NM_007610)	promoter-TSS (NM_007610)	17	NM_007610	12366	Mm.3921	NM_007610	ENSMUSG00000029863	Casp2	CASP-2|ICH-1|NEDD-2|Nedd2	caspase 2	protein-coding	0.110000	0.696517			
Oct4_nocontrol_ChIP_peaks_unique-369	chr3	157922496	157922696	+	0.64946	NA	intron (NM_145953, intron 1 of 11)	intron (NM_145953, intron 1 of 11)	2467	NM_145953	107869	Mm.28301	NM_145953	ENSMUSG00000028179	Cth	0610010I13Rik|AI314617|BC019483|CSE|Cys3	cystathionase (cystathionine gamma-lyase)	protein-coding	0.010000	0.398010			-27(CCATGGCTTTTCAAAT,+,0.00)
merged_common-92	chr10	32593416	32593616	+	0.64946	NA	intron (NM_001013411, intron 1 of 6)	RLTR22_Mur|LTR|ERVK	296399	NM_001013411	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0.005000	0.338308		26(TATACATATTCACA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2069	chr6	43858017	43858217	+	0.64946	NA	Intergenic	Intergenic	-191839	NM_001311111	29807	Mm.320979	NM_013861	ENSMUSG00000029735	Tpk1	-	thiamine pyrophosphokinase	protein-coding	0.005000	0.313433			
merged_common-866	chrX	147241766	147241966	+	0.64946	NA	Intergenic	RLTR13D1|LTR|ERVK	83656	NR_029956	723914		NR_029956	ENSMUSG00000065450	Mir448	Mirn448|mir-448|mmu-mir-448	microRNA 448	ncRNA	0.000000	0.412935			-82(GCATTGTTATGTACAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-640	chr13	21402556	21402756	+	0.64946	NA	promoter-TSS (NM_023685)	promoter-TSS (NM_023685)	99	NM_001145778	72739	Mm.296071	NM_023685	ENSMUSG00000021327	Zkscan3	2810435N07Rik|AA408594|AI132359|Skz1|Zf47|Zfp-47|Zfp306|Zfp307|mszf35	zinc finger with KRAB and SCAN domains 3	protein-coding	0.090000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-1924	chr5	41708059	41708259	+	0.64946	NA	promoter-TSS (NR_132325)	promoter-TSS (NR_132325)	20	NM_001310590	100972	Mm.41555	NM_027295	ENSMUSG00000029128	Rab28	2700023P08Rik|AW496496	RAB28, member RAS oncogene family	protein-coding	0.085000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-415	chr11	65775305	65775505	+	0.64946	NA	intron (NM_009157, intron 1 of 10)	intron (NM_009157, intron 1 of 10)	12954	NM_001316367	26398	Mm.412922	NM_009157	ENSMUSG00000033352	Map2k4	JNKK1|MAPKK 4|MEK4|MKK4|PRKMK4|Sek1|Serk1	mitogen-activated protein kinase kinase 4	protein-coding	0.010000	0.328358			41(AATTTGTGATTTAAAT,+,0.00),49(ATTTAAATTACAATTA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-912	chr15	81730012	81730212	+	0.64946	NA	promoter-TSS (NM_011241)	promoter-TSS (NM_011241)	-193	NR_152441	19387	Mm.270975	NM_011241	ENSMUSG00000022391	Rangap1	C79654|Fug1|mKIAA1835	RAN GTPase activating protein 1	protein-coding	0.095000	0.587065			
ePOU_nocontrol_ChIP_peaks_unique-1017	chr16	64771072	64771272	+	0.64946	NA	promoter-TSS (NM_026273)	promoter-TSS (NM_026273)	-233	NM_026273	67609	Mm.212157	NM_026273	ENSMUSG00000059920	4930453N24Rik	AI649104|din	RIKEN cDNA 4930453N24 gene	protein-coding	0.070000	0.621891			
Oct4_nocontrol_ChIP_peaks_unique-17	chr1	86504336	86504536	+	0.64946	NA	Intergenic	CpG	-22121	NM_001360830	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.060000	0.646766			
Oct4_nocontrol_ChIP_peaks_unique-294	chr2	14275207	14275407	+	0.64946	NA	intron (NM_008625, intron 9 of 29)	intron (NM_008625, intron 9 of 29)	14304	NR_030609	100124488		NR_030609	ENSMUSG00000077897	Mir511	Mirn511|mir-511|mmu-mir-511	microRNA 511	ncRNA	0.000000	0.283582			
Oct4_nocontrol_ChIP_peaks_unique-180	chr14	56364604	56364804	+	0.64946	NA	promoter-TSS (NM_138652)	promoter-TSS (NM_138652)	-364	NM_138652	192113	Mm.273271	NM_138652	ENSMUSG00000022229	Atp12a	Atp1al1|HKalpha2|cHKA	ATPase, H+/K+ transporting, nongastric, alpha polypeptide	protein-coding	0.055000	0.582090			
ePOU_nocontrol_ChIP_peaks_unique-2274	chr7	110164148	110164348	+	0.64946	NA	Intergenic	Intergenic	42189	NM_009516	22390	Mm.287173	NM_009516	ENSMUSG00000031016	Wee1	Wee1A	WEE 1 homolog 1 (S. pombe)	protein-coding	0.055000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-417	chr11	67024116	67024316	+	0.64946	NA	promoter-TSS (NM_001291042)	promoter-TSS (NM_001291042)	-938	NM_001291042	338369	Mm.128138	NM_177392	ENSMUSG00000050270	Tmem220	-	transmembrane protein 220	protein-coding	0.010000	0.412935			-63(TTTAGAATAACAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1515	chr2	165369612	165369812	+	0.64946	NA	Intergenic	Intergenic	-7593	NM_001005425	381405	Mm.296323	NM_001005425	ENSMUSG00000056824	Zfp663	Gm1008	zinc finger protein 663	protein-coding	0.010000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-2319	chr7	133709124	133709324	+	0.64946	NA	promoter-TSS (NM_001302085)	promoter-TSS (NM_001302085)	71	NM_001302086	22276	Mm.3160	NM_009479	ENSMUSG00000030979	Uros	AI415298|UROIIIS|Uros3	uroporphyrinogen III synthase	protein-coding	0.055000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-1834	chr4	119802284	119802484	+	0.64946	NA	Intergenic	Intergenic	-12294	NM_010657	16656	Mm.302758	NM_010657	ENSMUSG00000028634	Hivep3	2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3	human immunodeficiency virus type I enhancer binding protein 3	protein-coding	0.000000	0.278607			
ePOU_nocontrol_ChIP_peaks_unique-890	chr15	66969741	66969941	+	0.64946	NA	promoter-TSS (NM_008681)	promoter-TSS (NM_008681)	-200	NM_008681	17988	Mm.30837	NM_008681	ENSMUSG00000005125	Ndrg1	CAP43|CMT4D|DRG1|HMSNL|NMSL|Ndr1|Ndrl|PROXY1|RTP|TDD5	N-myc downstream regulated gene 1	protein-coding	0.105000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-2118	chr6	91533597	91533797	+	0.64946	NA	Intergenic	Intergenic	17662	NM_026309	67678	Mm.246693	NM_026309	ENSMUSG00000034192	Lsm3	1010001J12Rik|2610005D18Rik|6030401D18Rik|SMX4|USS2	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.015000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-2221	chr7	64872905	64873105	+	0.64946	NA	promoter-TSS (NM_023239)	promoter-TSS (NM_023239)	35	NM_023239	66647	Mm.19944	NM_023239	ENSMUSG00000070520	Nsmce3	5730494G16Rik|AI642138|BB044375|HCA4|Mageg1|Ndnl2|mage-g1	NSE3 homolog, SMC5-SMC6 complex component	protein-coding	0.150000	0.731343			
Oct4_nocontrol_ChIP_peaks_unique-454	chr6	124796041	124796241	+	0.64946	NA	Intergenic	B1_Mus1|SINE|Alu	-12520	NM_001306050	14794	Mm.261906	NM_013539	ENSMUSG00000038451	Spsb2	AI461677|C9|Grcc9|SSB2	splA/ryanodine receptor domain and SOCS box containing 2	protein-coding	0.010000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-773	chr14	48012711	48012911	+	0.64946	NA	Intergenic	Intergenic	-108058	NM_033602	93834	Mm.296457	NM_033602	ENSMUSG00000021846	Peli2	AW047589|BB129927	pellino 2	protein-coding	0.000000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-819	chr14	101804696	101804896	+	0.64946	NA	intron (NM_201529, intron 2 of 30)	intron (NM_201529, intron 2 of 30)	-35827	NM_001347628	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.005000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-739	chr13	115887213	115887413	+	0.64946	NA	Intergenic	Intergenic	422375	NM_021459	16392	Mm.42242	NM_021459	ENSMUSG00000042258	Isl1	-	ISL1 transcription factor, LIM/homeodomain	protein-coding	0.000000	0.333333			64(ATTAGCATATGAAAAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2573	chr9	94268839	94269039	+	0.64946	NA	Intergenic	Intergenic	269142	NM_001033145	68861	Mm.258746	NM_001033145	ENSMUSG00000045414	Dipk2a	1190002N15Rik|GoPro49|HASF	divergent protein kinase domain 2A	protein-coding	0.005000	0.407960			-40(TCTTTGTTATGCACTT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1219	chr18	62977817	62978017	+	0.64946	NA	promoter-TSS (NM_028017)	promoter-TSS (NM_028017)	1	NM_028017	108123	Mm.292687	NM_028017	ENSMUSG00000024581	Napg	2400003O04Rik|SNARE	N-ethylmaleimide sensitive fusion protein attachment protein gamma	protein-coding	0.085000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-68	chr1	82323815	82324015	+	0.64946	NA	intron (NM_029777, intron 1 of 6)	intron (NM_029777, intron 1 of 6)	7336	NM_029777	76867	Mm.226994	NM_029777	ENSMUSG00000026142	Rhbdd1	4930418P06Rik|RRP4|mRHBDD1	rhomboid domain containing 1	protein-coding	0.010000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-1456	chr2	120731213	120731413	+	0.64946	NA	intron (NM_026891, intron 1 of 27)	CpG	204	NM_026891	68968	Mm.2289	NM_026891	ENSMUSG00000027284	Cdan1	1500015A01Rik|AI448026|AW492297|CDA-I|CDA1|CDAI	congenital dyserythropoietic anemia, type I (human)	protein-coding	0.110000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-1520	chr2	170009749	170009949	+	0.64946	NA	intron (NM_001363022, intron 2 of 2)	UCON20|Unknown|Unknown	-46662	NR_131974	446211	Mm.266854	NR_131974	ENSMUSG00000103935	AY702102	STDP1	cDNA sequence AY702102	ncRNA	0.035000	0.432836	39(CATGCATAATGGATC,+,0.00),39(CATGCATAATGGATC,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1917	chr5	34336462	34336662	+	0.64946	NA	promoter-TSS (NM_001304270)	promoter-TSS (NM_001304270)	182	NM_001304269	19822	Mm.21281	NM_011278	ENSMUSG00000029110	Rnf4	AU018689|Gtrgeo8|SNURF	ring finger protein 4	protein-coding	0.115000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-428	chr11	76201992	76202192	+	0.64946	NA	promoter-TSS (NM_027773)	promoter-TSS (NM_027773)	36	NM_027773	116972	Mm.188413	NM_027773	ENSMUSG00000069808	Fam57a	2310047D13Rik|4932415L08Rik|5430402E13Rik|5430420K21Rik|Wdt3	family with sequence similarity 57, member A	protein-coding	0.145000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-1865	chr4	147848306	147848506	+	0.64946	NA	promoter-TSS (NM_198619)	promoter-TSS (NM_198619)	12	NM_001355730	242747	Mm.332053	NM_198619	ENSMUSG00000059423	Zfp933	2810408P10Rik	zinc finger protein 933	protein-coding	0.020000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-1329	chr2	5266586	5266786	+	0.64946	NA	Intergenic	RLTR13B4|LTR|ERVK	-112704	NR_030601	100124465		NR_030601	ENSMUSG00000078031	Mir466d	Mirn466d	microRNA 466d	ncRNA	0.005000	0.402985	29(ATTGCATTATTCATA,+,0.00),29(ATTGCATTATTCATA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1239	chr18	79996104	79996304	+	0.64946	NA	Intergenic	ORR1A3-int|LTR|ERVL-MaLR	-23090	NM_001370903	102640717		NM_001370903		Gm36718	-	predicted gene, 36718	protein-coding	0.010000	0.407960		43(TATGCTTATTCAAA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-273	chr10	81320702	81320902	+	0.64946	NA	promoter-TSS (NM_027381)	promoter-TSS (NM_027381)	-301	NM_027381	70312	Mm.87628	NM_027381	ENSMUSG00000034889	Cactin	2510012J08Rik	cactin, spliceosome C complex subunit	protein-coding	0.070000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-327	chr10	121689700	121689900	+	0.64946	NA	exon (NM_177335, exon 12 of 13)	exon (NM_177335, exon 12 of 13)	48099	NM_177335	216393	Mm.119759	NM_177335	ENSMUSG00000047642	D930020B18Rik	1500017I17Rik	RIKEN cDNA D930020B18 gene	protein-coding	0.025000	0.552239			
ePOU_nocontrol_ChIP_peaks_unique-542	chr12	48012005	48012205	+	0.64946	NA	Intergenic	Intergenic	-1193338	NM_001364634	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.000000	0.318408			80(TTTTGCTCATTGAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-104	chr1	132139458	132139658	+	0.64946	NA	5' UTR (NM_008795, exon 1 of 16)	5' UTR (NM_008795, exon 1 of 16)	127	NM_008795	18557	Mm.28130	NM_008795	ENSMUSG00000026437	Cdk18	AA682070|Ctk18|Pctk3	cyclin-dependent kinase 18	protein-coding	0.090000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-2152	chr6	124512384	124512584	+	0.64946	NA	promoter-TSS (NM_023143)	promoter-TSS (NM_023143)	-137	NM_023143	50909	Mm.333375	NM_023143	ENSMUSG00000055172	C1ra	AI132558|C1r|mC1rA	complement component 1, r subcomponent A	protein-coding	0.020000	0.517413			
ePOU_nocontrol_ChIP_peaks_unique-757	chr14	27838584	27838784	+	0.64946	NA	intron (NM_177814, intron 3 of 15)	intron (NM_177814, intron 3 of 15)	216277	NM_177814	238988	Mm.318004	NM_177814	ENSMUSG00000040640	Erc2	6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha	ELKS/RAB6-interacting/CAST family member 2	protein-coding	0.005000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-150	chr1	169793614	169793814	+	0.64946	NA	Intergenic	Intergenic	-46072	NM_009062	19736	Mm.41642	NM_009062	ENSMUSG00000038530	Rgs4	AA004315|AA597169|ESTM48|ESTM50	regulator of G-protein signaling 4	protein-coding	0.000000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-1518	chr2	166713855	166714055	+	0.64946	NA	promoter-TSS (NM_177782)	promoter-TSS (NM_177782)	-123	NM_177782	277360	Mm.34420	NM_177782	ENSMUSG00000039621	Prex1	G630042G04|P-REX1|Setd6	phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 1	protein-coding	0.060000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-737	chr13	113353717	113353917	+	0.64946	NA	Intergenic	Intergenic	144158	NM_023612	71690	Mm.38929	NM_023612	ENSMUSG00000042379	Esm1	0610042H23Rik|AV004503|ESM-1	endothelial cell-specific molecule 1	protein-coding	0.010000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-1259	chr19	6118195	6118395	+	0.64946	NA	exon (NM_133678, exon 1 of 2)	exon (NM_133678, exon 1 of 2)	291	NM_133678	66406	Mm.303924	NM_133678	ENSMUSG00000024790	Sac3d1	2410004C24Rik|AU015683|shd1	SAC3 domain containing 1	protein-coding	0.115000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-2249	chr7	84672487	84672687	+	0.64946	NA	intron (NM_001360577, intron 1 of 7)	L1M5|LINE|L1	6809	NM_001360579	65098	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	0.000000	0.278607			-90(ATTAGCATCACAGTGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-22	chr1	46945218	46945418	+	0.64946	NA	Intergenic	RLTR13B1|LTR|ERVK	-19542	NM_001356417	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.005000	0.427861	-85(ATTGCATTATTCATG,+,0.00),-85(ATTGCATTATTCATG,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-160	chr13	108101048	108101248	+	0.64946	NA	intron (NM_001360140, intron 1 of 4)	intron (NM_001360140, intron 1 of 4)	56674	NM_001048250	75616	Mm.491164	NM_001048250	ENSMUSG00000071180	Smim15	2810008M24Rik	small integral membrane protein 15	protein-coding	0.000000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-2163	chr6	137936433	137936633	+	0.64946	NA	Intergenic	Intergenic	143383	NM_177787	277898	Mm.269823	NM_177787	ENSMUSG00000044378	Slc15a5	9830102E05Rik	solute carrier family 15, member 5	protein-coding	0.005000	0.402985			20(CTTTACTTATGGAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1986	chr5	120612765	120612965	+	0.64946	NA	promoter-TSS (NM_028041)	promoter-TSS (NM_028041)	-265	NM_028041	71990	Mm.24495	NM_028041	ENSMUSG00000029599	Ddx54	2410015A15Rik|AI414901|DP97	DEAD (Asp-Glu-Ala-Asp) box polypeptide 54	protein-coding	0.045000	0.557214			
ePOU_nocontrol_ChIP_peaks_unique-1812	chr4	105100684	105100884	+	0.64946	NA	intron (NM_178143, intron 1 of 8)	intron (NM_178143, intron 1 of 8)	9114	NM_001356568	108079	Mm.48638	NM_178143	ENSMUSG00000028518	Prkaa2	2310008I11Rik|A830082D05|AMPKalpha2	protein kinase, AMP-activated, alpha 2 catalytic subunit	protein-coding	0.005000	0.343284		16(TTTGCATATTCATC,+,0.00),16(TTTGCATATTCATC,-,0.00)	9(ACATTGCTTTGCATAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-171	chr14	26417114	26417314	+	0.64946	NA	intron (NM_032008, intron 21 of 22)	intron (NM_032008, intron 21 of 22)	59667	NR_038005	71106	Mm.158564	NR_038005	ENSMUSG00000021874	4933413J09Rik	GCSE	RIKEN cDNA 4933413J09 gene	ncRNA	0.005000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-1065	chr17	16209735	16209935	+	0.64946	NA	Intergenic	Intergenic	-383249	NM_178615	68799	Mm.293466	NM_178615	ENSMUSG00000048027	Rgmb	1110059F19Rik|DRAGON	repulsive guidance molecule family member B	protein-coding	0.000000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-883	chr15	60509862	60510062	+	0.64946	NA	Intergenic	Intergenic	-313003	NR_030696	320469	Mm.230853	NM_177166		9930014A18Rik	-	RIKEN cDNA 9930014A18 gene	ncRNA	0.005000	0.373134			
Oct4_nocontrol_ChIP_peaks_unique-298	chr2	27684457	27684657	+	0.64946	NA	intron (NM_011305, intron 1 of 9)	intron (NM_011305, intron 1 of 9)	7356	NM_011305	20181	Mm.24624	NM_011305	ENSMUSG00000015846	Rxra	9530071D11Rik|Nr2b1|RXRalpha1	retinoid X receptor alpha	protein-coding	0.020000	0.517413			-94(TTTTTGTCATGCAAAG,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-236	chr16	80078379	80078579	+	0.64946	NA	Intergenic	L1_Rod|LINE|L1	79103	NM_030146	78654		NM_030146		1700066C05Rik	-	RIKEN cDNA 1700066C05 gene	protein-coding	0.005000	0.258706			7(TCTTTGTCATGTATAA,+,0.00),24(CTTTTGTTATGTATAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-457	chr11	98400329	98400529	+	0.64946	NA	promoter-TSS (NM_001033537)	promoter-TSS (NM_001033537)	61	NM_001033537	320655	Mm.86519	NM_001033537	ENSMUSG00000038208	Pgap3	CAB2|D430035D22Rik|Perld1	post-GPI attachment to proteins 3	protein-coding	0.080000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-387	chr11	51689096	51689296	+	0.64946	NA	promoter-TSS (NM_025319)	promoter-TSS (NM_025319)	-562	NM_025319	66050	Mm.35693	NM_025319	ENSMUSG00000007777	0610009B22Rik	-	RIKEN cDNA 0610009B22 gene	protein-coding	0.040000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-2046	chr6	29212022	29212222	+	0.64946	NA	exon (NM_011829, exon 1 of 14)	exon (NM_011829, exon 1 of 14)	175	NM_011829	23917	Mm.260707	NM_011829	ENSMUSG00000003500	Impdh1	B930086D20Rik|IMPDH-I	inosine monophosphate dehydrogenase 1	protein-coding	0.115000	0.686567			
ePOU_nocontrol_ChIP_peaks_unique-108	chr1	133694517	133694717	+	0.64946	NA	Intergenic	Intergenic	-4509	NM_001159649	240754	Mm.36534	NM_172842	ENSMUSG00000051998	Lax1	A530029E09|E430019B13Rik	lymphocyte transmembrane adaptor 1	protein-coding	0.000000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-2476	chr8	128704631	128704831	+	0.64946	NA	intron (NM_010578, intron 1 of 15)	intron (NM_010578, intron 1 of 15)	19077	NM_010578	16412	Mm.263396	NM_010578	ENSMUSG00000025809	Itgb1	4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa	integrin beta 1 (fibronectin receptor beta)	protein-coding	0.000000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-1252	chr19	4510312	4510512	+	0.64946	NA	promoter-TSS (NM_001162946)	promoter-TSS (NM_001162946)	-60	NM_001162946	18563	Mm.1845	NM_008797	ENSMUSG00000024892	Pcx	Pc|Pcb	pyruvate carboxylase	protein-coding	0.070000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-1212	chr18	59175559	59175759	+	0.64946	NA	5' UTR (NM_001081328, exon 1 of 3)	5' UTR (NM_001081328, exon 1 of 3)	319	NM_001081328	78923	Mm.84007	NM_001081328	ENSMUSG00000058152	Chsy3	4833446K15Rik|AI662215	chondroitin sulfate synthase 3	protein-coding	0.115000	0.736318			
ePOU_nocontrol_ChIP_peaks_unique-926	chr15	92161083	92161283	+	0.64946	NA	promoter-TSS (NM_001159647)	promoter-TSS (NM_001159647)	-174	NM_001159647	12805	Mm.4911	NM_007727	ENSMUSG00000055022	Cntn1	AW495098|CNTN|F3cam|usl	contactin 1	protein-coding	0.005000	0.432836	45(CATGAATTATGCATG,+,0.00),45(CATGAATTATGCATG,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-558	chrX	166040178	166040378	+	0.64946	NA	Intergenic	Intergenic	-130176	NM_001310724	237221	Mm.209490	NM_146238	ENSMUSG00000040621	Gemin8	B130034M20Rik|B930082C09Rik|BC023488|gemin-8	gem nuclear organelle associated protein 8	protein-coding	0.000000	0.363184			-6(ATTTGCTTAAAAATGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1693	chr3	132915666	132915866	+	0.64946	NA	intron (NM_001287101, intron 4 of 13)	intron (NM_001287101, intron 4 of 13)	34048	NM_001287103	114249	Mm.279310	NM_033525	ENSMUSG00000040998	Npnt	1110009H02Rik|AA682063|AI314031|Nctn|POEM	nephronectin	protein-coding	0.020000	0.467662			
merged_common-837	chr9	73113203	73113403	+	0.64946	NA	promoter-TSS (NM_198609)	promoter-TSS (NM_198609)	-166	NM_198609	225215	Mm.379366	NM_198609	ENSMUSG00000032215	Rsl24d1	2410159K22Rik	ribosomal L24 domain containing 1	protein-coding	0.050000	0.547264			
ePOU_nocontrol_ChIP_peaks_unique-2299	chr7	120982150	120982350	+	0.64946	NA	promoter-TSS (NM_007672)	promoter-TSS (NM_007672)	62	NM_007672	12585	Mm.1640	NM_007672	ENSMUSG00000030878	Cdr2	AA617262	cerebellar degeneration-related 2	protein-coding	0.115000	0.736318			
ePOU_nocontrol_ChIP_peaks_unique-1556	chr3	32421728	32421928	+	0.64946	NA	Intergenic	Intergenic	-14323	NM_008839	18706	Mm.260521	NM_008839	ENSMUSG00000027665	Pik3ca	6330412C24Rik|caPI3K|p110|p110alpha	phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit alpha	protein-coding	0.000000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-497	chr11	120573189	120573389	+	0.64946	NA	promoter-TSS (NM_011032)	promoter-TSS (NM_011032)	-36	NM_011032	18453	Mm.16660	NM_011032	ENSMUSG00000025130	P4hb	ERp59|PDI|Pdia1|Thbp	prolyl 4-hydroxylase, beta polypeptide	protein-coding	0.100000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1936	chr5	65335682	65335882	+	0.64946	NA	promoter-TSS (NM_001347357)	promoter-TSS (NM_001347357)	-143	NM_001347358	19687	Mm.148877	NM_011258	ENSMUSG00000029191	Rfc1	140kDa|Alp145|RFC140|Recc1	replication factor C (activator 1) 1	protein-coding	0.090000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-2346	chr8	11486140	11486340	+	0.64946	NA	Intergenic	Intergenic	-7600	NM_011227	19332	Mm.37632	NM_011227	ENSMUSG00000031504	Rab20	AA536966|D8Ertd350e	RAB20, member RAS oncogene family	protein-coding	0.010000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-1228	chr18	69487824	69488024	+	0.64946	NA	intron (NM_001361127, intron 5 of 19)	intron (NM_001361127, intron 5 of 19)	141764	NM_001361128	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.005000	0.328358			-32(ATATGCATTAGAATAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2363	chr8	36987648	36987848	+	0.64946	NA	intron (NR_126063, intron 2 of 2)	intron (NR_126063, intron 2 of 2)	-5827	NM_001039220	621080	Mm.373292	NM_001039220	ENSMUSG00000074384	AI429214	-	expressed sequence AI429214	protein-coding	0.005000	0.318408			
ePOU_nocontrol_ChIP_peaks_unique-2209	chr7	38107623	38107823	+	0.64946	NA	promoter-TSS (NM_007633)	promoter-TSS (NM_007633)	-233	NM_007633	12447	Mm.16110	NM_007633	ENSMUSG00000002068	Ccne1	AW538188|CycE1	cyclin E1	protein-coding	0.135000	0.751244			
ePOU_nocontrol_ChIP_peaks_unique-1016	chr16	57721962	57722162	+	0.64946	NA	intron (NM_007739, intron 1 of 3)	intron (NM_007739, intron 1 of 3)	32675	NM_007739	12837	Mm.130388	NM_007739	ENSMUSG00000068196	Col8a1	Col8a-1	collagen, type VIII, alpha 1	protein-coding	0.000000	0.298507			
ePOU_nocontrol_ChIP_peaks_unique-277	chr10	82739042	82739242	+	0.64946	NA	exon (NM_001081218, exon 14 of 15)	exon (NM_001081218, exon 14 of 15)	24999	NM_010914	18045	Mm.245998	NM_010914	ENSMUSG00000020248	Nfyb	AA985999|Cbf-A	nuclear transcription factor-Y beta	protein-coding	0.015000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-696	chr13	82264209	82264409	+	0.64946	NA	Intergenic	Intergenic	434024	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.005000	0.313433			
ePOU_nocontrol_ChIP_peaks_unique-1106	chr17	46674145	46674345	+	0.64946	NA	promoter-TSS (NR_160853)	promoter-TSS (NR_160853)	61	NM_001368622	224823	Mm.45101	NM_144857	ENSMUSG00000023971	Rrp36	-	ribosomal RNA processing 36 homolog (S. cerevisiae)	protein-coding	0.080000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-679	chr13	64134926	64135126	+	0.64946	NA	3' UTR (NM_175494, exon 5 of 5)	3' UTR (NM_175494, exon 5 of 5)	-5696	NM_001001321	70484	Mm.133731	NM_001001321	ENSMUSG00000033114	Slc35d2	5730408I21Rik|SQV7L|UGTrel8|hfrc|mUGTrel8	solute carrier family 35, member D2	protein-coding	0.000000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-632	chr13	16498112	16498312	+	0.64946	NA	Intergenic	Intergenic	-474789	NR_155430	100503142	Mm.359204	NR_155430		B230303A05Rik	B230303A05|EG328191	U1 small nuclear ribonucleoprotein 1C pseudogene	pseudo	0.005000	0.492537			
Oct4_nocontrol_ChIP_peaks_unique-64	chr10	80398843	80399043	+	0.64946	NA	intron (NM_001306143, intron 1 of 6)	CpG	588	NM_013595	17192	Mm.7142	NM_013595	ENSMUSG00000035478	Mbd3	AI181826|AU019209	methyl-CpG binding domain protein 3	protein-coding	0.145000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-2356	chr8	31033389	31033589	+	0.64946	NA	Intergenic	Intergenic	-56038	NM_025869	66959	Mm.23916	NM_025869	ENSMUSG00000039661	Dusp26	2310043K02Rik|Skrp3	dual specificity phosphatase 26 (putative)	protein-coding	0.030000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-1459	chr2	121866748	121866948	+	0.64946	NA	promoter-TSS (NM_199038)	promoter-TSS (NM_199038)	-122	NM_001205369	319996	Mm.292109	NM_177054	ENSMUSG00000060227	Casc4	D130060C09Rik|VGFG2573	cancer susceptibility candidate 4	protein-coding	0.135000	0.731343			
ePOU_nocontrol_ChIP_peaks_unique-271	chr10	81137726	81137926	+	0.64946	NA	intron (NM_010731, intron 1 of 2)	CpG	1555	NM_010731	16969	Mm.20920	NM_010731	ENSMUSG00000035011	Zbtb7a	9030619K07Rik|9130006G12Rik|AI452336|FBI-1|Lrf|Pokemon|Zbtb7	zinc finger and BTB domain containing 7a	protein-coding	0.095000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-885	chr15	62137129	62137329	+	0.64946	NA	intron (NR_132746, intron 2 of 6)	intron (NR_132746, intron 2 of 6)	82222	NR_003523	67552	Mm.484027	NM_026230		H2afy3	4933432H23Rik	H2A histone family, member Y3	pseudo	0.020000	0.487562			
merged_common-677	chr5	147412956	147413156	+	0.64946	NA	Intergenic	RLTR10F|LTR|ERVK	-5564	NR_033625	100039805	Mm.394705	NR_033625	ENSMUSG00000106820	D5Ertd605e	Gm2433	DNA segment, Chr 5, ERATO Doi 605, expressed	ncRNA	0.035000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-295	chr10	97547912	97548112	+	0.64946	NA	Intergenic	Intergenic	-17489	NM_008524	17022	Mm.18888	NM_008524	ENSMUSG00000036446	Lum	Ldc|SLRR2D	lumican	protein-coding	0.005000	0.353234			-95(CTATGGTCTTTAAAAT,+,0.00),45(ATTTGAATGAGAAAGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2085	chr6	52058375	52058575	+	0.64946	NA	Intergenic	Intergenic	-44474	NR_110440	102635415	Mm.333063	NR_110440	ENSMUSG00000085412	Halr1	Gm15055|Haunt|Linchoxa1|linc-Evx1|linc-Hoxa1|linc1547	Hoxa adjacent long noncoding RNA 1	ncRNA	0.015000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-1912	chr5	32910668	32910868	+	0.64946	NA	intron (NM_001025426, intron 19 of 42)	intron (NM_001025426, intron 19 of 42)	47047	NM_001170567	277854	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0.010000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-2355	chr8	27128597	27128797	+	0.64946	NA	promoter-TSS (NM_025686)	promoter-TSS (NM_025686)	-65	NM_025686	66653	Mm.334467	NM_025686	ENSMUSG00000031487	Brf2	2700059M06Rik|5730512K07Rik|AU018504|AU022602|BRFU|TFIIIB50	BRF2, RNA polymerase III transcription initiation factor 50kDa subunit	protein-coding	0.060000	0.587065			
ePOU_nocontrol_ChIP_peaks_unique-2007	chr5	137307544	137307744	+	0.64946	NA	promoter-TSS (NM_031405)	promoter-TSS (NM_031405)	30	NM_031405	83701	Mm.387734	NM_031405	ENSMUSG00000037364	Srrt	2810019G02Rik|ASR2A|ASR2B|ASR2C|ASR2D|Ars2|Asr2	serrate RNA effector molecule homolog (Arabidopsis)	protein-coding	0.105000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-1023	chr16	72578074	72578274	+	0.64946	NA	Intergenic	Intergenic	-84975	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.015000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-1653	chr3	104818183	104818383	+	0.64946	NA	promoter-TSS (NM_001163441)	promoter-TSS (NM_001163441)	22	NM_008619	17454	Mm.1597	NM_008619	ENSMUSG00000002227	Mov10	C77703|Mov-10	Mov10 RISC complex RNA helicase	protein-coding	0.040000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-2632	chrX	75416620	75416820	+	0.64946	NA	promoter-TSS (NM_145956)	promoter-TSS (NM_145956)	92	NM_145956	210766	Mm.226957	NM_145956	ENSMUSG00000031201	Brcc3	C6.1A	BRCA1/BRCA2-containing complex, subunit 3	protein-coding	0.070000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-788	chr14	60554345	60554545	+	0.64946	NA	Intergenic	Intergenic	-80260	NM_001033272	219140	Mm.149776	NM_001033272	ENSMUSG00000021990	Spata13	C79050|ESTM11|X83327|mFLJ00298	spermatogenesis associated 13	protein-coding	0.015000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-236	chr10	54797458	54797658	+	0.64946	NA	Intergenic	L1MA7|LINE|L1	721636	NR_038016	100502920	Mm.403982	NR_038016	ENSMUSG00000097069	Gm16998	-	predicted gene, 16998	ncRNA	0.010000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-607	chr12	101679022	101679222	+	0.64946	NA	intron (NM_028924, intron 7 of 11)	intron (NM_028924, intron 7 of 11)	32451	NM_028924	74413	Mm.275939	NM_028924	ENSMUSG00000021187	Tc2n	4933406D09Rik|Mtac2d1|Tac2-N	tandem C2 domains, nuclear	protein-coding	0.010000	0.338308			-36(TTTTCCATAACAAATA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2609	chr9	118255805	118256005	+	0.64946	NA	Intergenic	Intergenic	105674	NR_155294	100502695	Mm.100991	NR_155294	ENSMUSG00000097402	Gm17399	-	predicted gene, 17399	ncRNA	0.030000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-1285	chr19	27454084	27454284	+	0.64946	NA	Intergenic	Intergenic	24147	NR_027987	107372	Mm.17942	NM_175354		C030016D13Rik	AW413347	RIKEN cDNA C030016D13 gene	ncRNA	0.005000	0.313433			
ePOU_nocontrol_ChIP_peaks_unique-394	chr11	55204165	55204365	+	0.64946	NA	promoter-TSS (NM_153139)	promoter-TSS (NM_153139)	-75	NM_153139	215335	Mm.35732	NM_153139	ENSMUSG00000020261	Slc36a1	5830411H19Rik|AI839897|Pat1	solute carrier family 36 (proton/amino acid symporter), member 1	protein-coding	0.060000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-50	chr1	63198509	63198709	+	0.64946	NA	intron (NM_146250, intron 2 of 2)	intron (NM_146250, intron 2 of 2)	-1749	NM_001285936	73884	Mm.86986	NM_028673	ENSMUSG00000027520	Zdbf2	4930431J08Rik|9330107J05Rik	zinc finger, DBF-type containing 2	protein-coding	0.015000	0.348259			49(ATTTGAATAACAATTC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-593	chr12	94003792	94003992	+	0.64946	NA	Intergenic	Intergenic	76554	NR_106175	102465890		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	0.005000	0.323383			19(TTTTACATGACAGTGC,-,0.00),49(CTATTGTGCTGCATAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-463	chr7	12478335	12478535	+	0.64946	NA	5' UTR (NM_001310620, exon 1 of 8)	5' UTR (NM_001310620, exon 1 of 8)	130	NM_001310620	67370	Mm.98929	NM_026112	ENSMUSG00000030386	Zfp606	2410022M24Rik|AW494727	zinc finger protein 606	protein-coding	0.100000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-1048	chr17	8986247	8986447	+	0.64946	NA	3' UTR (NM_001347321, exon 22 of 22)	3' UTR (NM_001347321, exon 22 of 22)	-1986	NM_001347544	66931	Mm.67591	NM_025851	ENSMUSG00000023873	1700010I14Rik	-	RIKEN cDNA 1700010I14 gene	protein-coding	0.000000	0.233831			
ePOU_nocontrol_ChIP_peaks_unique-742	chr14	10526322	10526522	+	0.64946	NA	intron (NM_001308285, intron 4 of 9)	ORR1F|LTR|ERVL-MaLR	-72964	NM_001308286	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.000000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-494	chr11	119491232	119491432	+	0.64946	NA	promoter-TSS (NM_001164636)	promoter-TSS (NM_001164636)	-15	NM_001164636	338371	Mm.271946	NM_177394	ENSMUSG00000039850	Endov	A730011L01Rik	endonuclease V	protein-coding	0.120000	0.681592			
Oct4_nocontrol_ChIP_peaks_unique-389	chr4	88722333	88722533	+	0.64946	NA	promoter-TSS (NM_172871)	promoter-TSS (NM_172871)	75	NM_172871	242521	Mm.260601	NM_172871	ENSMUSG00000070923	Klhl9	8030469P05|C530050O22Rik|mKIAA1354	kelch-like 9	protein-coding	0.100000	0.686567			
ePOU_nocontrol_ChIP_peaks_unique-639	chr13	21267950	21268150	+	0.64946	NA	Intergenic	Intergenic	24636	NM_010343	14780	Mm.1332	NM_010343	ENSMUSG00000004344	Gpx5	AV379049|Arep	glutathione peroxidase 5	protein-coding	0.040000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-1906	chr5	24843002	24843202	+	0.64946	NA	promoter-TSS (NM_053075)	promoter-TSS (NM_053075)	-741	NM_053075	19744	Mm.319175	NM_053075	ENSMUSG00000028945	Rheb	Rheb1	Ras homolog enriched in brain	protein-coding	0.040000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-2041	chr6	17455124	17455324	+	0.64946	NA	Intergenic	Intergenic	-8733	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.000000	0.383085		52(CATGTATATTGATT,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-206	chr10	22730105	22730305	+	0.64946	NA	promoter-TSS (NR_106123)	promoter-TSS (NR_106123)	-773	NR_106123	102465768		NR_106123	ENSMUSG00000098714	Mir7663	Gm28034|mmu-mir-7663	microRNA 7663	ncRNA	0.015000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-544	chr12	51077625	51077825	+	0.64946	NA	Intergenic	Intergenic	72569	NR_126468	75494	Mm.416848	NR_126468	ENSMUSG00000111986	1700008C04Rik	-	RIKEN cDNA 1700008C04 gene	ncRNA	0.005000	0.318408			
ePOU_nocontrol_ChIP_peaks_unique-645	chr13	26636599	26636799	+	0.64946	NA	Intergenic	Intergenic	133466	NM_008232	15192	Mm.7411	NM_008232	ENSMUSG00000045835	Hdgfl1	4921520N01Rik|HRP-1|Hdgfrp1|Pwwp1	HDGF like 1	protein-coding	0.000000	0.273632			-94(ATTTACATTAAAATTA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-226	chr10	39133702	39133902	+	0.64946	NA	promoter-TSS (NM_028006)	promoter-TSS (NM_028006)	98	NM_001359442	66337	Mm.45187	NM_183254	ENSMUSG00000051736	Fam229b	1700025K23Rik	family with sequence similarity 229, member B	protein-coding	0.030000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-720	chr13	102106302	102106502	+	0.64946	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-338185	NM_001077495	18708	Mm.259333	NM_001024955	ENSMUSG00000041417	Pik3r1	PI3K|p50alpha|p55alpha|p85alpha	phosphoinositide-3-kinase regulatory subunit 1	protein-coding	0.005000	0.482587			-16(ATTAACAAAACAAGCC,-,0.00)
merged_common-857	chrX	10264227	10264427	+	0.64946	NA	intron (NM_008769, intron 1 of 9)	intron (NM_008769, intron 1 of 9)	12022	NM_008769	18416	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	0.010000	0.388060	46(TCTACATAATGCATA,+,0.00),46(TCTACATAATGCATA,-,0.00)		24(ATTTCAAAAACAGTAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-297	chr10	98914409	98914609	+	0.64946	NA	promoter-TSS (NM_026482)	promoter-TSS (NM_026482)	-133	NM_001359509	67972	Mm.166944	NM_026482	ENSMUSG00000019943	Atp2b1	2810442I22Rik|E130111D10Rik|Pmca1	ATPase, Ca++ transporting, plasma membrane 1	protein-coding	0.165000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-2478	chr9	3988174	3988374	+	0.64946	NA	Intergenic	RLTR13D6|LTR|ERVK	321220	NR_136940	67618	Mm.33970	NM_026276	ENSMUSG00000025894	Aasdhppt	2010309J24Rik|2810407B07Rik|AASD-PPT|CGI-80|LYS2|LYS5	aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase	protein-coding	0.005000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-589	chr12	90664447	90664647	+	0.64946	NA	Intergenic	Intergenic	74491	NM_010050	13371	Mm.21389	NM_010050	ENSMUSG00000007682	Dio2	5DII|AI324267|DIOII	deiodinase, iodothyronine, type II	protein-coding	0.005000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-663	chr13	46669237	46669437	+	0.64946	NA	promoter-TSS (NM_001033192)	promoter-TSS (NM_001033192)	-185	NM_001033192	97863	Mm.275934	NM_001033192	ENSMUSG00000069237	Fam8a1	C78339	family with sequence similarity 8, member A1	protein-coding	0.105000	0.587065			
ePOU_nocontrol_ChIP_peaks_unique-185	chr1	193400263	193400463	+	0.64946	NA	Intergenic	Intergenic	-30081	NM_144817	215303	Mm.40329	NM_144817	ENSMUSG00000016179	Camk1g	CLICK-III|CaMKIgamma	calcium/calmodulin-dependent protein kinase I gamma	protein-coding	0.000000	0.353234			-16(AAATGAATAACAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-484	chr11	115963199	115963399	+	0.64946	NA	intron (NM_020483, intron 9 of 10)	intron (NM_020483, intron 9 of 10)	-11426	NM_133663	192897	Mm.213873	NM_133663	ENSMUSG00000020758	Itgb4	AA407042|C230078O20|CD104	integrin beta 4	protein-coding	0.015000	0.497512			
merged_common-49	chr1	134079082	134079282	+	0.64946	NA	promoter-TSS (NM_007570)	promoter-TSS (NM_007570)	-27	NM_007570	12227	Mm.392646	NM_007570	ENSMUSG00000020423	Btg2	AA959598|APRO1|Pc3|TIS21	B cell translocation gene 2, anti-proliferative	protein-coding	0.120000	0.746269			
ePOU_nocontrol_ChIP_peaks_unique-809	chr14	79677191	79677391	+	0.64946	NA	Intergenic	Intergenic	-15108	NM_010701	16840	Mm.46561	NM_010701	ENSMUSG00000022025	Cnmd	Bricd3|ChM-I|Chmd|Lect1	chondromodulin	protein-coding	0.040000	0.532338			
ePOU_nocontrol_ChIP_peaks_unique-1532	chr3	9173484	9173684	+	0.64946	NA	Intergenic	Intergenic	-76983	NM_177660	229055	Mm.103262	NM_177660	ENSMUSG00000069114	Zbtb10	4832414A18|AU021107|RINZF	zinc finger and BTB domain containing 10	protein-coding	0.010000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-1970	chr5	106574571	106574771	+	0.64946	NA	Intergenic	CpG	-116505	NM_001005477	104382	Mm.271593	NM_001005477	ENSMUSG00000034384	Barhl2	E130309B19Rik|MBH1	BarH like homeobox 2	protein-coding	0.140000	0.781095			
Oct4_nocontrol_ChIP_peaks_unique-102	chr11	107189263	107189463	+	0.64946	NA	promoter-TSS (NM_133702)	promoter-TSS (NM_133702)	18	NM_133702	68979	Mm.294617	NM_133702	ENSMUSG00000018433	Nol11	1500002M01Rik|AU015220|AU019874	nucleolar protein 11	protein-coding	0.090000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-1103	chr17	45563884	45564084	+	0.64946	NA	promoter-TSS (NM_001357105)	promoter-TSS (NM_001357105)	48	NM_001357105	73836	Mm.289716	NM_028662	ENSMUSG00000037089	Slc35b2	1110003M08Rik|AA407792|AI842275|PAPST1|Slc35b1	solute carrier family 35, member B2	protein-coding	0.100000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-1262	chr19	6969491	6969691	+	0.64946	NA	exon (NM_008874, exon 1 of 31)	exon (NM_008874, exon 1 of 31)	223	NM_008874	18797	Mm.273204	NM_008874	ENSMUSG00000024960	Plcb3	mKIAA4098	phospholipase C, beta 3	protein-coding	0.095000	0.661692			
merged_common-443	chr19	55316209	55316409	+	0.64946	NA	promoter-TSS (NM_001360595)	promoter-TSS (NM_001360595)	252	NM_001360432	53611	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.075000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-2010	chr5	139199964	139200164	+	0.64946	NA	promoter-TSS (NM_024451)	promoter-TSS (NM_024451)	-573	NM_001256116	77053	Mm.210845	NM_024451	ENSMUSG00000036817	Sun1	4632417G13Rik|5730434D03Rik|Unc84a|mKIAA0810	Sad1 and UNC84 domain containing 1	protein-coding	0.025000	0.462687			63(ATAAACAAAACAAATG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-269	chr10	80622291	80622491	+	0.64946	NA	promoter-TSS (NM_134002)	promoter-TSS (NM_134002)	-389	NM_134002	103236	Mm.29873	NM_134002	ENSMUSG00000003345	Csnk1g2	2810429I12Rik|AI463719	casein kinase 1, gamma 2	protein-coding	0.055000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-365	chr11	35682125	35682325	+	0.64946	NA	intron (NM_011412, intron 29 of 35)	intron (NM_011412, intron 29 of 35)	65409	NR_029799	723924		NR_029799	ENSMUSG00000065583	Mir218-2	Mirn218-2|mir-218-2	microRNA 218-2	ncRNA	0.015000	0.427861			-96(TTTTTGTCCTGTTAAG,+,0.00),64(ATTTACAAAGTAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2028	chr6	8493922	8494122	+	0.64946	NA	Intergenic	L1ME4a|LINE|L1	15139	NR_040452	320312	Mm.374890	NR_040452	ENSMUSG00000087305	A430035B10Rik	2810488G03Rik	RIKEN cDNA A430035B10 gene	ncRNA	0.005000	0.323383		13(CATGCATATGCAAA,+,0.00),13(CATGCATATGCAAA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2125	chr6	98093640	98093840	+	0.64946	NA	Intergenic	L1MC5|LINE|L1	101957	NM_008601	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.005000	0.338308			
Oct4_nocontrol_ChIP_peaks_unique-327	chr2	146951723	146951923	+	0.64946	NA	intron (NM_001033298, intron 10 of 13)	intron (NM_001033298, intron 10 of 13)	-61176	NM_001356402	24128	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0.005000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-2098	chr6	67037362	67037562	+	0.64946	NA	promoter-TSS (NM_007836)	promoter-TSS (NM_007836)	-55	NM_007836	13197	Mm.72235	NM_007836	ENSMUSG00000036390	Gadd45a	AA545191|Ddit1|GADD45	growth arrest and DNA-damage-inducible 45 alpha	protein-coding	0.035000	0.587065			27(ATTGGGTTATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1776	chr4	72299766	72299966	+	0.64946	NA	Intergenic	Intergenic	98622	NR_027923	68285	Mm.37541	NR_027923		C630043F03Rik	AI851307	RIKEN cDNA C630043F03 gene	ncRNA	0.000000	0.388060			-4(TATTTGTAATGCATAT,+,0.00),25(GTTTTGCATTTCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1867	chr4	149137418	149137618	+	0.64946	NA	promoter-TSS (NM_027263)	promoter-TSS (NM_027263)	82	NM_027263	69928	Mm.260893	NM_027263	ENSMUSG00000073705	Cenps	2610040C18Rik|2810407L01Rik|Apitd1|CENP-S	centromere protein S	protein-coding	0.095000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-2103	chr6	72711348	72711548	+	0.64946	NA	intron (NM_009332, intron 3 of 11)	intron (NM_009332, intron 3 of 11)	77597	NM_009332	21415	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.015000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-2254	chr7	89768759	89768959	+	0.64946	NA	intron (NM_181407, intron 3 of 13)	L1M2|LINE|L1	134770	NM_001162979	70884	Mm.252823	NM_001162979	ENSMUSG00000039391	Ccdc81	4921513D09Rik	coiled-coil domain containing 81	protein-coding	0.000000	0.278607			
ePOU_nocontrol_ChIP_peaks_unique-2565	chr9	85486510	85486710	+	0.64946	NA	Intergenic	RMER5|LTR|ERV1	-159460	NM_001160379	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Tent5a	BAP014|D930050G01Rik|Fam46a	terminal nucleotidyltransferase 5A	protein-coding	0.000000	0.303483		-40(CATGATTATTTATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1527	chr2	181410979	181411179	+	0.64946	NA	3' UTR (NM_028125, exon 3 of 3)	3' UTR (NM_028125, exon 3 of 3)	13309	NM_027656	72147	Mm.486504	NM_027656	ENSMUSG00000027583	Zbtb46	2610019F01Rik|4933406L05Rik|BZEL|Btbd4	zinc finger and BTB domain containing 46	protein-coding	0.005000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-1861	chr4	141060552	141060752	+	0.64946	NA	promoter-TSS (NM_001145958)	promoter-TSS (NM_001145958)	-107	NM_001145958	230872	Mm.80685	NM_172122	ENSMUSG00000040860	Crocc	-	ciliary rootlet coiled-coil, rootletin	protein-coding	0.105000	0.686567			
ePOU_nocontrol_ChIP_peaks_unique-1495	chr2	150741460	150741660	+	0.64946	NA	Intergenic	Intergenic	-7520	NM_001370629	12497	Mm.275524	NM_172117	ENSMUSG00000033068	Entpd6	2700026H11Rik|Cd39l2|NTPDase-6	ectonucleoside triphosphate diphosphohydrolase 6	protein-coding	0.015000	0.412935		-33(CATACATATGTATT,+,0.00),-33(CATACATATGTATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2291	chr7	116504363	116504563	+	0.64946	NA	promoter-TSS (NM_001130479)	promoter-TSS (NM_001130479)	94	NM_001360375	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.085000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-682	chr13	69586495	69586695	+	0.64946	NA	exon (NM_175283, exon 4 of 5)	exon (NM_175283, exon 4 of 5)	24868	NM_175283	78925	Mm.451912	NM_175283	ENSMUSG00000021594	Srd5a1	0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1	steroid 5 alpha-reductase 1	protein-coding	0.030000	0.522388			-73(AAATTGTTATGCTGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1077	chr17	26584682	26584882	+	0.64946	NA	intron (NM_026170, intron 1 of 9)	intron (NM_026170, intron 1 of 9)	23270	NM_026170	67458	Mm.30496	NM_026170	ENSMUSG00000001576	Ergic1	1200007D18Rik|maa-136	endoplasmic reticulum-golgi intermediate compartment (ERGIC) 1	protein-coding	0.025000	0.577114			
ePOU_nocontrol_ChIP_peaks_unique-459	chr11	99369296	99369496	+	0.64946	NA	intron (NM_027574, intron 5 of 7)	intron (NM_027574, intron 5 of 7)	5507	NM_027574	70843	Mm.180256	NM_027574	ENSMUSG00000055937	Krt28	4733401L19Rik|CK-28|K25D|K28|Krt25d	keratin 28	protein-coding	0.010000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-1057	chr17	11017156	11017356	+	0.64946	NA	intron (NM_016694, intron 1 of 11)	intron (NM_016694, intron 1 of 11)	176897	NM_001317726	50873	Mm.311110	NM_016694	ENSMUSG00000023826	Prkn	Park2	parkin RBR E3 ubiquitin protein ligase	protein-coding	0.000000	0.283582	-5(TATGAATTATGCATG,+,0.00),-5(TATGAATTATGCATG,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-141	chr13	34002616	34002816	+	0.64946	NA	promoter-TSS (NM_001243192)	promoter-TSS (NM_001243192)	78	NM_001243192	20719	Mm.252210	NM_009254	ENSMUSG00000060147	Serpinb6a	4930482L21Rik|D330015H01Rik|PI-6|Serpinb6|Spi3|ovalbumin	serine (or cysteine) peptidase inhibitor, clade B, member 6a	protein-coding	0.130000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-1573	chr3	51359327	51359527	+	0.64946	NA	Intergenic	tRNA-Pro-CCY|tRNA|tRNA	-18783	NM_001291059	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.060000	0.532338			
ePOU_nocontrol_ChIP_peaks_unique-2385	chr8	49742490	49742690	+	0.64946	NA	Intergenic	Intergenic	-625522	NR_046067	100039954	Mm.400419	NR_046067	ENSMUSG00000110281	Gm2516	-	predicted gene 2516	ncRNA	0.005000	0.333333		-83(TATGTATATGCACA,+,0.00)	52(ATTTACAATATAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2542	chr9	64022801	64023001	+	0.64946	NA	promoter-TSS (NM_008542)	promoter-TSS (NM_008542)	-842	NM_008542	17130	Mm.325757	NM_008542	ENSMUSG00000036867	Smad6	Madh6|b2b390Clo	SMAD family member 6	protein-coding	0.060000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-2557	chr9	77750634	77750834	+	0.64946	NA	Intergenic	CpG	-3801	NM_010295	14629	Mm.89888	NM_010295	ENSMUSG00000032350	Gclc	D9Wsu168e|GLCL-H|Ggcs-hs|Glclc	glutamate-cysteine ligase, catalytic subunit	protein-coding	0.150000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-1289	chr19	29251481	29251681	+	0.64946	NA	promoter-TSS (NM_008413)	promoter-TSS (NM_008413)	-222	NM_001048177	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.170000	0.845771			
ePOU_nocontrol_ChIP_peaks_unique-1879	chr4	155774432	155774632	+	0.64946	NA	promoter-TSS (NM_147776)	promoter-TSS (NM_147776)	29	NM_147776	246228	Mm.26515	NM_147776	ENSMUSG00000042116	Vwa1	4932416A11Rik|WARP	von Willebrand factor A domain containing 1	protein-coding	0.075000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-2260	chr7	91457388	91457588	+	0.64946	NA	intron (NM_011807, intron 2 of 22)	intron (NM_011807, intron 2 of 22)	366702	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	0.000000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-233	chr10	44716850	44717050	+	0.64946	NA	Intergenic	Intergenic	-258202	NM_007548	12142	Mm.4800	NM_007548	ENSMUSG00000038151	Prdm1	Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo	PR domain containing 1, with ZNF domain	protein-coding	0.010000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-703	chr13	94385097	94385297	+	0.64946	NA	intron (NM_009680, intron 1 of 26)	intron (NM_009680, intron 1 of 26)	26237	NM_009680	11774	Mm.21185	NM_009680	ENSMUSG00000021686	Ap3b1	AP-3|AU015684|C78395|Hps2|beta3A|pe|pearl|rim2	adaptor-related protein complex 3, beta 1 subunit	protein-coding	0.010000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-1642	chr3	95871424	95871624	+	0.64946	NA	promoter-TSS (NM_078479)	promoter-TSS (NM_078479)	2	NR_040446	100042889	Mm.440109	NR_040446	ENSMUSG00000080727	C920021L13Rik	-	RIKEN cDNA C920021L13 gene	ncRNA	0.095000	0.661692			
merged_common-509	chr2	157204530	157204730	+	0.64946	NA	promoter-TSS (NM_001139516)	promoter-TSS (NM_001139516)	-96	NM_001139516	19650	Mm.244671	NM_011249	ENSMUSG00000027641	Rbl1	AW547426|PRB1|p107	RB transcriptional corepressor like 1	protein-coding	0.085000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-2331	chr7	142967452	142967652	+	0.64946	NA	intron (NM_008554, intron 2 of 2)	CpG	1712	NM_008554	17173	Mm.196417	NM_008554	ENSMUSG00000009248	Ascl2	2410083I15Rik|Mash2|bHLHa45	achaete-scute family bHLH transcription factor 2	protein-coding	0.115000	0.726368			9(ATTTGCAATGCAAACT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1944	chr5	74716580	74716780	+	0.64946	NA	Intergenic	L1M4|LINE|L1	-13777	NM_001159577	16924	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.000000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-1027	chr16	74423463	74423663	+	0.64946	NA	intron (NM_001358491, intron 1 of 27)	intron (NM_001358491, intron 1 of 27)	-11738	NM_175549	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.010000	0.293532			-8(ATTAACATGATAATAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-937	chr15	99251856	99252056	+	0.64946	NA	promoter-TSS (NM_016766)	promoter-TSS (NM_016766)	5	NM_016766	51812	Mm.383472	NM_016766	ENSMUSG00000037570	Mcrs1	C78274|ICP22BP|MSP58|P78	microspherule protein 1	protein-coding	0.090000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-1136	chr17	75299962	75300162	+	0.64946	NA	intron (NM_206958, intron 15 of 29)	intron (NM_206958, intron 15 of 29)	121281	NM_206958	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.000000	0.338308			
ePOU_nocontrol_ChIP_peaks_unique-522	chr12	33380198	33380398	+	0.64946	NA	intron (NR_131031, intron 2 of 3)	B3|SINE|B2	14462	NR_131031	75836	Mm.410807	NR_131031	ENSMUSG00000085664	Atxn7l1os2	4930556N08Rik	ataxin 7-like 1, opposite strand 2	ncRNA	0.035000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-2369	chr8	42977402	42977602	+	0.64946	NA	Intergenic	Tigger13a|DNA|TcMar-Tigger	163984	NM_177742	244448	Mm.64542	NM_177742	ENSMUSG00000031651	Triml1	4933403D14|BC050188	tripartite motif family-like 1	protein-coding	0.000000	0.323383			
merged_common-104	chr10	69156937	69157137	+	0.64946	NA	Intergenic	Intergenic	-51515	NM_001252636	69288	Mm.26659	NM_001081347	ENSMUSG00000019944	Rhobtb1	1700008H16Rik|3110048G13Rik|AI173445|AI573858|AV350930	Rho-related BTB domain containing 1	protein-coding	0.000000	0.323383			-41(ATGTACATAAAAATGG,-,0.00),31(TCTTTGTGATGGTAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-349	chr11	16951209	16951409	+	0.64946	NA	promoter-TSS (NM_176982)	promoter-TSS (NM_176982)	-27	NR_110425	72735	Mm.268598	NR_015469		Eldr	2810442I21Rik|4930500E12Rik|Fabl	Egfr long non-coding downstream RNA	ncRNA	0.065000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-1066	chr17	17827072	17827272	+	0.64946	NA	Intergenic	CpG	-3016	NR_029536	387230		NR_029536	ENSMUSG00000065396	Mir99b	Mirn99b|mmu-mir-99b	microRNA 99b	ncRNA	0.105000	0.796020			
ePOU_nocontrol_ChIP_peaks_unique-378	chr11	45444440	45444640	+	0.64946	NA	Intergenic	MER58B|DNA|hAT-Charlie	-327612	NR_045100	100504255	Mm.123608	NR_045100	ENSMUSG00000084773	Gm12159	-	predicted gene 12159	ncRNA	0.020000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-2491	chr9	21073230	21073430	+	0.64946	NA	TTS (NM_027911)	TTS (NM_027911)	201	NR_157202	68165	Mm.490294	NM_001039824	ENSMUSG00000079677	Fdx2	B230118G17Rik|Fdx1l	ferredoxin 2	protein-coding	0.125000	0.726368			
Oct4_nocontrol_ChIP_peaks_unique-220	chr16	4214100	4214300	+	0.64946	NA	promoter-TSS (NM_001025432)	promoter-TSS (NM_001025432)	-796	NM_001025432	12914	Mm.132238	NM_001025432	ENSMUSG00000022521	Crebbp	AW558298|CBP|CBP/p300|KAT3A|p300/CBP	CREB binding protein	protein-coding	0.155000	0.746269			
ePOU_nocontrol_ChIP_peaks_unique-1825	chr4	116293420	116293620	+	0.64946	NA	intron (NM_181585, intron 9 of 9)	intron (NM_181585, intron 9 of 9)	70773	NM_001355586	18710	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	0.025000	0.452736			-71(ATTTGCATAATATTTA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1836	chr4	122999425	122999625	+	0.64946	NA	intron (NM_008506, intron 1 of 1)	intron (NM_008506, intron 1 of 1)	3594	NM_008506	16918	Mm.1055	NM_008506	ENSMUSG00000028654	Mycl	AW536278|L-myc|Lmyc-1|Lmyc1|Mycl1|bHLHe38	v-myc avian myelocytomatosis viral oncogene lung carcinoma derived	protein-coding	0.015000	0.542289			
ePOU_nocontrol_ChIP_peaks_unique-2378	chr8	46617189	46617389	+	0.64946	NA	promoter-TSS (NM_001284409)	promoter-TSS (NM_001284409)	-2	NM_009810	12367	Mm.34405	NM_009810	ENSMUSG00000031628	Casp3	A830040C14Rik|AC-3|CASP-3|CC3|CPP-32|CPP32|Caspase-3|Lice|SCA-1|Yama|mldy	caspase 3	protein-coding	0.090000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-1317	chr19	53296651	53296851	+	0.64946	NA	Intergenic	B3A|SINE|B2	-13755	NM_001008542	17859	Mm.2154	NM_010847	ENSMUSG00000025025	Mxi1	Gm10197|Mad2|bHLHc11	MAX interactor 1, dimerization protein	protein-coding	0.030000	0.517413			
ePOU_nocontrol_ChIP_peaks_unique-1772	chr4	65893078	65893278	+	0.64946	NA	intron (NM_207109, intron 10 of 22)	MER5B|DNA|hAT-Charlie	288192	NM_053084	69807	Mm.22786	NM_053084	ENSMUSG00000051675	Trim32	1810045E12Rik|3f3|BBS11|Zfp117	tripartite motif-containing 32	protein-coding	0.000000	0.338308			33(ACATTTTTATTTTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-37	chr1	57083151	57083351	+	0.64946	NA	Intergenic	Intergenic	-103003	NM_001358580	212712	Mm.145599	NM_139146	ENSMUSG00000038331	Satb2	BAP002|mKIAA1034	special AT-rich sequence binding protein 2	protein-coding	0.050000	0.497512			35(GTATTGTAATGCAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-768	chr14	38348808	38349008	+	0.64946	NA	Intergenic	Intergenic	-549394	NR_045713	75170	Mm.372967	NR_045713	ENSMUSG00000093528	Nrg3os	4930529F24Rik	neuregulin 3, opposite strand	ncRNA	0.000000	0.358209			-20(ATTTGTATGTGAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2624	chrX	10292640	10292840	+	0.64946	NA	intron (NM_008769, intron 4 of 9)	intron (NM_008769, intron 4 of 9)	40435	NM_008769	18416	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	0.010000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-1231	chr18	72484643	72484843	+	0.64946	NA	Intergenic	Intergenic	-133674	NM_007831	13176	Mm.167882	NM_007831	ENSMUSG00000060534	Dcc	C030036D22Rik|Igdcc1	deleted in colorectal carcinoma	protein-coding	0.000000	0.263682		-18(AATGCATATGTAAA,-,0.00),1(TGTGCATATTCATT,+,0.00),1(TGTGCATATTCATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-52	chr1	63770305	63770505	+	0.64946	NA	Intergenic	Intergenic	-1138	NM_001256158	74426	Mm.159197	NM_001256158	ENSMUSG00000025961	4933402D24Rik	-	RIKEN cDNA 4933402D24 gene	protein-coding	0.005000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-1398	chr2	74154114	74154314	+	0.64946	NA	Intergenic	Intergenic	153503	NR_040501	73962	Mm.50289	NR_040501	ENSMUSG00000085405	4930441J16Rik	Astx1a|Astx1b|Astx1c	RIKEN cDNA 4930441J16 gene	ncRNA	0.010000	0.412935			-60(GCATTGTCATGCAAAG,+,0.00)
merged_common-357	chr17	24426555	24426755	+	0.64946	NA	promoter-TSS (NM_010023)	promoter-TSS (NM_010023)	-28	NM_010023	13177	Mm.291743	NM_010023	ENSMUSG00000024132	Eci1	Dci|eci	enoyl-Coenzyme A delta isomerase 1	protein-coding	0.080000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-242	chr10	60277579	60277779	+	0.64946	NA	promoter-TSS (NM_011179)	promoter-TSS (NM_011179)	51	NM_001146121	19156	Mm.29978	NM_011179	ENSMUSG00000004207	Psap	AI037048|SGP-1	prosaposin	protein-coding	0.110000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-563	chr12	69296735	69296935	+	0.64946	NA	5' UTR (NM_027117, exon 1 of 13)	5' UTR (NM_027117, exon 1 of 13)	154	NM_027117	69554	Mm.234368	NM_027117	ENSMUSG00000020978	Klhdc2	2310022K15Rik|D12Ertd522e|HCLP-1|LCP	kelch domain containing 2	protein-coding	0.185000	0.800995			
ePOU_nocontrol_ChIP_peaks_unique-1059	chr17	12916483	12916683	+	0.64946	NA	promoter-TSS (NM_026310)	promoter-TSS (NM_026310)	254	NM_013686	21454	Mm.229342	NM_013686	ENSMUSG00000068039	Tcp1	AI528772|CCT|Cct1|Ccta|TRic|Tcp-1|Tp63|c-cpn|p63	t-complex protein 1	protein-coding	0.100000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-622	chr12	119440881	119441081	+	0.64946	NA	Intergenic	Intergenic	-2429	NM_001163136	238455	Mm.31376	NM_001163136	ENSMUSG00000041886	Macc1	4732474O15Rik|Gm267	metastasis associated in colon cancer 1	protein-coding	0.005000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-1076	chr17	25844659	25844859	+	0.64946	NA	promoter-TSS (NM_001364950)	promoter-TSS (NM_001364950)	-234	NM_145999	214952	Mm.40907	NM_145999	ENSMUSG00000025733	Rhot2	Arht2|Miro2	ras homolog family member T2	protein-coding	0.015000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-1461	chr2	125389649	125389849	+	0.64946	NA	intron (NM_007993, intron 11 of 65)	intron (NM_007993, intron 11 of 65)	116689	NM_007993	14118	Mm.271644	NM_007993	ENSMUSG00000027204	Fbn1	AI536462|B430209H23|Fib-1|Tsk	fibrillin 1	protein-coding	0.000000	0.313433			-78(ATATCAATAACAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2623	chrX	10285112	10285312	+	0.64946	NA	intron (NM_008769, intron 4 of 9)	L1MB1|LINE|L1	32907	NM_008769	18416	Mm.2611	NM_008769	ENSMUSG00000031173	Otc	AI265390|Sf|spf	ornithine transcarbamylase	protein-coding	0.010000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-223	chr10	37378987	37379187	+	0.64946	NA	Intergenic	Intergenic	-240161	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.010000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-1447	chr2	115418114	115418314	+	0.64946	NA	Intergenic	Intergenic	-73934	NR_040516	78193	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA	0.000000	0.313433		-16(TCTGAATATGCAAG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1073	chr17	24894863	24895063	+	0.64946	NA	promoter-TSS (NM_023260)	promoter-TSS (NM_023260)	124	NM_001163102	193838	Mm.440199	NM_001163102	ENSMUSG00000073436	Eme2	2810013J18Rik	essential meiotic structure-specific endonuclease subunit 2	protein-coding	0.100000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-1193	chr18	41951239	41951439	+	0.64946	NA	promoter-TSS (NM_029942)	promoter-TSS (NM_029942)	-145	NM_029942	77619	Mm.30649	NM_029942	ENSMUSG00000056671	Prelid2	1700003A01Rik|C330008K14Rik	PRELI domain containing 2	protein-coding	0.040000	0.537313			
merged_common-525	chr3	41901036	41901236	+	0.64946	NA	Intergenic	Lx8b|LINE|L1	158518	NM_027271	73852	Mm.29006	NM_027271	ENSMUSG00000025766	D3Ertd751e	2810009O15Rik|4930415G15Rik	DNA segment, Chr 3, ERATO Doi 751, expressed	protein-coding	0.000000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-1365	chr2	32939492	32939692	+	0.64946	NA	intron (NM_199302, intron 16 of 24)	B3|SINE|B2	21663	NM_199302	227738	Mm.248037	NM_199302	ENSMUSG00000026792	Lrsam1	-	leucine rich repeat and sterile alpha motif containing 1	protein-coding	0.010000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-848	chr15	21153225	21153425	+	0.64946	NA	intron (NM_001008420, intron 1 of 11)	intron (NM_001008420, intron 1 of 11)	41873	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.005000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-2127	chr6	98931190	98931390	+	0.64946	NA	intron (NM_001197321, intron 17 of 17)	intron (NM_001197321, intron 17 of 17)	97008	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.025000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-109	chr1	134244321	134244521	+	0.64946	NA	Intergenic	Intergenic	-8964	NM_001291930	11539	Mm.298908	NM_009629	ENSMUSG00000042429	Adora1	A1-AR|A1AR|A1R|AA1R|AI848715|ARA1|BB176431|Ri	adenosine A1 receptor	protein-coding	0.040000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-1901	chr5	24154710	24154910	+	0.64946	NA	intron (NM_026448, intron 8 of 10)	intron (NM_026448, intron 8 of 10)	-10153	NM_001346582	231042	Mm.45513	NM_153092	ENSMUSG00000048439	Nupl2	AV116043|CG1|NLP-1|Nlp1	nucleoporin like 2	protein-coding	0.000000	0.298507		66(AATGCATATTAATT,+,0.00),66(AATGCATATTAATT,-,0.00)	-77(CCTTTGTTTTACTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1387	chr2	61531468	61531668	+	0.64946	NA	Intergenic	Intergenic	-47018	NM_011529	21353	Mm.244393	NM_011529	ENSMUSG00000064289	Tank	C86182|E430026L09Rik|I-TRAF	TRAF family member-associated Nf-kappa B activator	protein-coding	0.005000	0.353234			85(TTCTTGTTATTCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1945	chr5	76140344	76140544	+	0.64946	NA	exon (NM_020611, exon 1 of 6)	exon (NM_020611, exon 1 of 6)	171	NM_020611	57357	Mm.289446	NM_020611	ENSMUSG00000029233	Srd5a3	1110025P14Rik|A430076C09|AV364670|AW987574|D730040M03Rik|H5ar|S5AR 3|Srd5a2l	steroid 5 alpha-reductase 3	protein-coding	0.110000	0.721393			
Oct4_nocontrol_ChIP_peaks_unique-178	chr14	55671932	55672132	+	0.64946	NA	promoter-TSS (NM_177992)	promoter-TSS (NM_177992)	-152	NM_008683	18002	Mm.296566	NM_008683	ENSMUSG00000010376	Nedd8	NEDD-8|Rub1	neural precursor cell expressed, developmentally down-regulated gene 8	protein-coding	0.070000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-31	chr1	54119685	54119885	+	0.64946	NA	intron (NM_001001883, intron 1 of 28)	intron (NM_001001883, intron 1 of 28)	75249	NM_172655	329152	Mm.132150	NM_172655	ENSMUSG00000042807	Hecw2	A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2	protein-coding	0.005000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-1035	chr16	93182765	93182965	+	0.64946	NA	Intergenic	Intergenic	170324	NR_040486	69857	Mm.81192	NR_040486	ENSMUSG00000100277	1810053B23Rik	1810008L18Rik|1810056K14Rik	RIKEN cDNA 1810053B23 gene	ncRNA	0.005000	0.323383			
ePOU_nocontrol_ChIP_peaks_unique-2051	chr6	30196089	30196289	+	0.64946	NA	Intergenic	Intergenic	19566	NR_038124	100463519	Mm.361139	NR_038124		BB283400	BF465573|Rncr4	expressed sequence BB283400	ncRNA	0.015000	0.577114			-18(CATTTCCCTTGCAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2606	chr9	114731171	114731371	+	0.64946	NA	promoter-TSS (NM_026036)	promoter-TSS (NM_026036)	68	NM_026036	67213	Mm.28858	NM_026036	ENSMUSG00000032434	Cmtm6	2810051A14Rik|AA536733|Cklfsf6	CKLF-like MARVEL transmembrane domain containing 6	protein-coding	0.095000	0.686567			
ePOU_nocontrol_ChIP_peaks_unique-1691	chr3	131752777	131752977	+	0.64946	NA	Intergenic	Intergenic	186845	NM_001289477	23971	Mm.244912	NM_011863	ENSMUSG00000028032	Papss1	AI325286|Asapk|SK1	3'-phosphoadenosine 5'-phosphosulfate synthase 1	protein-coding	0.000000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-2058	chr6	33497491	33497691	+	0.64946	NA	intron (NM_009148, intron 9 of 17)	intron (NM_009148, intron 9 of 17)	248463	NM_001347089	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.000000	0.358209	-48(CCTCAATTATGCATT,+,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1102	chr17	45039901	45040101	+	0.64946	NA	intron (NR_158206, intron 9 of 11)	intron (NR_158206, intron 9 of 11)	-159116	NM_029257	75341	Mm.386821	NM_029257		4930564C03Rik	-	RIKEN cDNA 4930564C03 gene	protein-coding	0.005000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-2228	chr7	67372850	67373050	+	0.64946	NA	promoter-TSS (NM_001291196)	promoter-TSS (NM_001291196)	-92	NM_001357325	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.085000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-1873	chr4	152120697	152120897	+	0.64946	NA	TTS (NM_033042)	TTS (NM_033042)	4454	NM_033042	85030	Mm.101198	NM_033042	ENSMUSG00000024793	Tnfrsf25	APO-3|DDR3|DR3|LARD|TR3|TRAMP|Tnfrsf12|WSL-1|WSL-LR|Wsl	tumor necrosis factor receptor superfamily, member 25	protein-coding	0.040000	0.557214			
ePOU_nocontrol_ChIP_peaks_unique-1562	chr3	38413546	38413746	+	0.64946	NA	Intergenic	Intergenic	71170	NM_001167883	99696	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.000000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-1902	chr5	24341633	24341833	+	0.64946	NA	intron (NM_013569, intron 2 of 14)	L1ME5|LINE|L1	9871	NM_013569	16511	Mm.6539	NM_013569	ENSMUSG00000038319	Kcnh2	AI326795|ERG1|LQT|Lqt2|M-erg|Merg1|merg1a|merg1b	potassium voltage-gated channel, subfamily H (eag-related), member 2	protein-coding	0.000000	0.407960		-42(AATCCATATGCATC,+,0.00),-42(AATCCATATGCATC,-,0.00),10(AAAGCATATTCATA,-,0.00)	-10(ATTTGCAAGAACATAT,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-35	chr1	169903428	169903628	+	0.64946	NA	Intergenic	Intergenic	-25411	NM_001033185	78465	Mm.291078	NM_001033185	ENSMUSG00000070532	Ccdc190	1700084C01Rik	coiled-coil domain containing 190	protein-coding	0.000000	0.258706			-2(TTTTGCATAATAATTT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1802	chr4	99151773	99151973	+	0.64946	NA	Intergenic	G-rich|Low_complexity|Low_complexity	-30948	NM_001369285	67299	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.000000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-2113	chr6	86758409	86758609	+	0.64946	NA	intron (NM_013471, intron 3 of 12)	intron (NM_013471, intron 3 of 12)	16605	NM_001331120	11746	Mm.259702	NM_013471	ENSMUSG00000029994	Anxa4	AI265406|AIV|AW106930|Anx4|Xanx-4	annexin A4	protein-coding	0.005000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-40	chr1	57948296	57948496	+	0.64946	NA	TTS (NM_144882)	TTS (NM_144882)	21128	NR_027630	51960	Mm.339711	NM_030211	ENSMUSG00000054770	Kctd18	4932411A20Rik|6530404F10Rik	potassium channel tetramerisation domain containing 18	protein-coding	0.020000	0.338308			
ePOU_nocontrol_ChIP_peaks_unique-743	chr14	10646819	10647019	+	0.64946	NA	intron (NM_001308285, intron 4 of 9)	intron (NM_001308285, intron 4 of 9)	-91634	NR_131139	547334	Mm.434606	NR_131139	ENSMUSG00000089833	Fhitos	Gm16542	fragile histidine triad gene, opposite strand	ncRNA	0.010000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-1852	chr4	133833054	133833254	+	0.64946	NA	Intergenic	Intergenic	41577	NM_001285506	20111	Mm.301827	NM_009097	ENSMUSG00000003644	Rps6ka1	Mapkapk-1a|Rsk|Rsk-1|Rsk1|S6K-alpha-1|p90-Rsk1|p90Rsk1|p90S6K|p90rsk	ribosomal protein S6 kinase polypeptide 1	protein-coding	0.005000	0.532338			
merged_common-661	chr5	115490292	115490492	+	0.64946	NA	Intergenic	U4|snRNA|snRNA	-5908	NM_133760	75387	Mm.332616	NM_133760	ENSMUSG00000029524	Sirt4	4930596O17Rik	sirtuin 4	protein-coding	0.035000	0.348259		2(ACTGAATATTCATG,+,0.00),2(ACTGAATATTCATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2568	chr9	88332563	88332763	+	0.64946	NA	intron (NM_011851, intron 1 of 8)	intron (NM_011851, intron 1 of 8)	5054	NM_011851	23959	Mm.244235	NM_011851	ENSMUSG00000032420	Nt5e	2210401F01Rik|5'-NT|AI447961|CD73|NT|Nt5|eNT	5' nucleotidase, ecto	protein-coding	0.010000	0.472637			-10(CTTTTGTTATTCATAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-668	chr13	51623890	51624090	+	0.64946	NA	Intergenic	Intergenic	-21242	NM_025415	66197	Mm.222228	NM_025415	ENSMUSG00000062248	Cks2	1110038L14Rik|CKSHS2	CDC28 protein kinase regulatory subunit 2	protein-coding	0.015000	0.407960		48(TATACATATGCAAT,-,0.00),62(TATGCATAGGCATA,+,0.00),62(TATGCATAGGCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2351	chr8	19979931	19980131	+	0.64946	NA	intron (NM_001270553, intron 6 of 9).2	CpG	250455	NM_001270553	100861668	Mm.491087	NM_001270553	ENSMUSG00000095294	Gm21119	-	predicted gene, 21119	protein-coding	0.090000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-1789	chr4	85535216	85535416	+	0.64946	NA	Intergenic	Intergenic	329860	NM_019535	20404	Mm.143603	NM_019535	ENSMUSG00000028488	Sh3gl2	9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a	SH3-domain GRB2-like 2	protein-coding	0.000000	0.343284			-26(TAATTGTTATCCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1933	chr5	53590266	53590466	+	0.64946	NA	promoter-TSS (NM_001277116)	promoter-TSS (NM_001277116)	20	NM_001277116	19664	Mm.209292	NM_009035	ENSMUSG00000039191	Rbpj	AI843960|CBF1|Igkjrb|Igkrsbp|RBP-J|RBP-J kappa|RBP-Jkappa|RBPjk|Rbpsuh	recombination signal binding protein for immunoglobulin kappa J region	protein-coding	0.100000	0.681592			
merged_common-531	chr3	55688241	55688441	+	0.64946	NA	intron (NM_030595, intron 47 of 57)	intron (NM_030595, intron 47 of 57)	-94169	NM_010750	17116	Mm.440209	NM_010750	ENSMUSG00000056947	Mab21l1	AW047968	mab-21-like 1	protein-coding	0.005000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-613	chr12	108894051	108894251	+	0.64946	NA	promoter-TSS (NM_001164488)	promoter-TSS (NM_001164488)	23	NM_001164314	22375	Mm.38433	NM_011710	ENSMUSG00000021266	Wars	TrpRS|WRS	tryptophanyl-tRNA synthetase	protein-coding	0.065000	0.631841			
Oct4_nocontrol_ChIP_peaks_unique-557	chrX	144405054	144405254	+	0.64946	NA	intron (NM_009428, intron 7 of 10)	L1MA4|LINE|L1	-51428	NM_001195579	100503240	Mm.387258	NM_001195579	ENSMUSG00000072934	Trpc5os	Gm15070	transient receptor potential cation channel, subfamily C, member 5, opposite strand	protein-coding	0.010000	0.407960			-50(ATCAGCATACCAAAGG,-,0.00)
merged_common-526	chr3	49672630	49672830	+	0.64946	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	84586	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding	0.000000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-1581	chr3	54807469	54807669	+	0.64946	NA	exon (NM_133231, exon 1 of 3)	exon (NM_133231, exon 1 of 3)	222	NM_133231	170767	Mm.185735	NM_133231	ENSMUSG00000036615	Rfxap	5730495K23Rik	regulatory factor X-associated protein	protein-coding	0.145000	0.771144			
ePOU_nocontrol_ChIP_peaks_unique-1696	chr3	133524638	133524838	+	0.64946	NA	intron (NM_001040400, intron 1 of 10)	intron (NM_001040400, intron 1 of 10)	19652	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.005000	0.417910			
merged_common-14	chr1	55131538	55131738	+	0.64946	NA	intron (NM_001310585, intron 1 of 6)	CpG	393	NM_025283	19070	Mm.291037	NM_025283	ENSMUSG00000025979	Mob4	2610109B12Rik|Mobkl3|Phocn|Prei3	MOB family member 4, phocein	protein-coding	0.095000	0.731343			
ePOU_nocontrol_ChIP_peaks_unique-1491	chr2	146855744	146855944	+	0.64946	NA	promoter-TSS (NM_001033298)	promoter-TSS (NM_001033298)	-36	NM_001033298	228730	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	0.110000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-71	chr1	84177561	84177761	+	0.64946	NA	intron (NM_001003948, intron 1 of 2)	L1MEc|LINE|L1	41300	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.010000	0.283582	50(CATACAAAATTCATA,+,0.00),50(CATACAAAATTCATA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1551	chr3	27604675	27604875	+	0.64946	NA	intron (NM_001356953, intron 4 of 26)	intron (NM_001356953, intron 4 of 26)	-19780	NR_037275	100526525		NR_037275	ENSMUSG00000092695	Mir3092	mir-3092|mmu-mir-3092	microRNA 3092	ncRNA	0.005000	0.412935			
merged_common-798	chr8	90670909	90671109	+	0.58916	NA	Intergenic	Intergenic	146384	NR_157160	100503868	Mm.442076	NR_157160	ENSMUSG00000110332	Gm19935	Gm45396	predicted gene, 19935	ncRNA	0.025000	0.462687			-41(CCATTGTGATGCAGAT,+,0.00)
merged_common-757	chr7	113569201	113569401	+	0.58916	NA	3' UTR (NM_001285831, exon 13 of 13)	3' UTR (NM_001285831, exon 13 of 13)	-4314	NR_126544	69295	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0.005000	0.293532	-35(AATGAATAATGCATA,+,0.00),-35(AATGAATAATGCATA,-,0.00)	-28(AATGCATAAGTATG,-,0.00)	6(ATTTTACCATGTAAAG,+,0.00)
merged_common-723	chr6	144073035	144073235	+	0.58916	NA	intron (NM_001113559, intron 3 of 13)	intron (NM_001113559, intron 3 of 13)	-126029	NM_001347506	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.010000	0.363184		-49(TCTGCATATTCATG,+,0.00),-49(TCTGCATATTCATG,-,0.00)	-56(CCTTTATTCTGCATAT,+,0.00)
merged_common-580	chr4	41569488	41569688	+	0.58760	NA	promoter-TSS (NM_175138)	promoter-TSS (NM_175138)	-61	NM_027993	71901	Mm.39215	NM_027993	ENSMUSG00000028439	Fam219a	2310028H24Rik	family with sequence similarity 219, member A	protein-coding	0.080000	0.661692	-13(CCTGCATTATTCATG,+,0.00),-13(CCTGCATTATTCATG,-,0.00)		
merged_common-678	chr5	149407005	149407205	+	0.58760	NA	Intergenic	L2a|LINE|L2	-4644	NR_151595	70717	Mm.252139	NM_027519	ENSMUSG00000029659	Medag	6330406I15Rik|Awms3|MEDA-4|Meda4|mAWMS3	mesenteric estrogen dependent adipogenesis	protein-coding	0.030000	0.368159			
merged_common-536	chr3	58259235	58259435	+	0.58720	NA	Intergenic	L1MA7|LINE|L1	-95528	NR_040538	67850	Mm.416968	NR_040538	ENSMUSG00000100666	1700007F19Rik	-	RIKEN cDNA 1700007F19 gene	ncRNA	0.005000	0.358209		36(TATGCATATTCAAG,+,0.00),36(TATGCATATTCAAG,-,0.00)	
merged_common-740	chr7	74624304	74624504	+	0.58720	NA	Intergenic	L1ME3Cz|LINE|L1	-69624	NM_001038643	108116	Mm.425467	NM_023908	ENSMUSG00000025790	Slco3a1	5830414C08Rik|Anr1|MJAM|OATP-D|R75096|Slc21a11	solute carrier organic anion transporter family, member 3a1	protein-coding	0.005000	0.373134		13(TATGCATATGTATA,+,0.00),13(TATGCATATGTATA,-,0.00)	
merged_common-581	chr4	41707113	41707313	+	0.58397	NA	Intergenic	Intergenic	6304	NM_027278	69961	Mm.425182	NM_027278	ENSMUSG00000036114	Rpp25l	2810432D09Rik|AW987258|Rppl25	ribonuclease P/MRP 25 subunit-like	protein-coding	0.025000	0.482587		12(TGTGCATATTCATG,+,0.00),12(TGTGCATATTCATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-600	chr12	98562754	98562954	+	0.57906	NA	intron (NM_029911, intron 1 of 6)	intron (NM_029911, intron 1 of 6)	11858	NM_001316665	72258	Mm.196158	NM_029911	ENSMUSG00000033854	Kcnk10	1700024D23Rik|3010005K24Rik|Trek2	potassium channel, subfamily K, member 10	protein-coding	0.020000	0.437811			
merged_common-552	chr3	101422365	101422565	+	0.57906	NA	intron (NM_207205, intron 2 of 10)	intron (NM_207205, intron 2 of 10)	45340	NM_207205	78908	Mm.257997	NM_207205	ENSMUSG00000042035	Igsf3	1700016K10Rik|2810035F16Rik|4833439O17Rik|mKIAA0466	immunoglobulin superfamily, member 3	protein-coding	0.015000	0.398010	23(TATGTATATTGCATA,+,0.00)	17(CATGCATATGTATA,+,0.00),17(CATGCATATGTATA,-,0.00),34(CATATATATGCATA,+,0.00)	-60(GTCTTGTCATTCATAG,+,0.00)
merged_common-51	chr1	140183571	140183771	+	0.57906	NA	promoter-TSS (NM_009888)	promoter-TSS (NM_009888)	-260	NM_009888	12628	Mm.8655	NM_009888	ENSMUSG00000026365	Cfh	Mud-1|NOM|Sas-1|Sas1	complement component factor h	protein-coding	0.000000	0.353234			26(AGATTGTCATGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1856	chr4	136836107	136836307	+	0.57906	NA	promoter-TSS (NM_001290753)	promoter-TSS (NM_001290753)	-195	NM_010142	13844	Mm.250981	NM_010142	ENSMUSG00000028664	Ephb2	Cek5|Drt|ETECK|Erk|Hek5|Nuk|Prkm5|Qek5|Sek3|Tyro5	Eph receptor B2	protein-coding	0.065000	0.572139			
merged_common-130	chr11	6389127	6389327	+	0.56737	NA	Intergenic	C-rich|Low_complexity|Low_complexity	-5898	NM_001005867	52915	Mm.1144	NM_028601	ENSMUSG00000041164	Zmiz2	Zimp7	zinc finger, MIZ-type containing 2	protein-coding	0.105000	0.776119			
merged_common-30	chr1	84461102	84461302	+	0.55933	NA	intron (NM_152915, intron 7 of 12)	intron (NM_152915, intron 7 of 12)	-176557	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.000000	0.328358	-15(TATGCATTATGCAAA,+,0.00),-15(TATGCATTATGCAAA,-,0.00)	-21(GTTGAATATGCATT,+,0.00),-21(GTTGAATATGCATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-804	chr14	76505924	76506124	+	0.55933	NA	intron (NM_001177751, intron 2 of 2)	intron (NM_001177751, intron 2 of 2)	1514	NM_009366	21807	Mm.153272	NM_009366	ENSMUSG00000022010	Tsc22d1	AA589566|AW105905|Egr5|TSC-22|Tgfb1i4|Tsc|Tsc22	TSC22 domain family, member 1	protein-coding	0.050000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-647	chr13	29370999	29371199	+	0.55933	NA	intron (NR_131896, intron 13 of 16)	intron (NR_131896, intron 13 of 16)	354844	NR_045075	77920	Mm.197051	NR_045073	ENSMUSG00000086363	A330102I10Rik	-	RIKEN cDNA A330102I10 gene	ncRNA	0.010000	0.447761			-23(ATTAGCATAACAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-250	chr10	62865337	62865537	+	0.55933	NA	intron (NM_001253857, intron 2 of 12)	intron (NM_001253857, intron 2 of 12)	21887	NM_001253857	52463	Mm.17774	NM_027384	ENSMUSG00000047146	Tet1	2510010B09Rik|AA517754|BB001228|Cxxc6|D10Ertd17e|LCX|mKIAA1676	tet methylcytosine dioxygenase 1	protein-coding	0.015000	0.547264			
merged_common-778	chr8	34190115	34190315	+	0.55933	NA	Intergenic	Intergenic	-23503	NR_105820	102465211		NR_105820	ENSMUSG00000098785	Mir6395	Gm27561|mmu-mir-6395	microRNA 6395	ncRNA	0.010000	0.447761			
merged_common-644	chr5	76321591	76321791	+	0.55933	NA	intron (NM_023508, intron 3 of 5)	intron (NM_023508, intron 3 of 5)	9465	NM_023508	79455	Mm.143764	NM_023508	ENSMUSG00000029235	Pdcl2	1700010B22Rik|1700016K07Rik|Mgcphlp|Tphlp	phosducin-like 2	protein-coding	0.020000	0.427861			
merged_common-639	chr5	45975911	45976111	+	0.55933	NA	Intergenic	Lx7|LINE|L1	-43602	NR_110478	78106	Mm.243807	NR_110478	ENSMUSG00000106602	4930405L22Rik	-	RIKEN cDNA 4930405L22 gene	ncRNA	0.005000	0.308458			
merged_common-375	chr17	67011881	67012081	+	0.55933	NA	intron (NM_008984, intron 7 of 30)	intron (NM_008984, intron 7 of 30)	14254	NR_049205	100885844		NR_049205	ENSMUSG00000093508	Mir5709	Gm22041|mir-5709|mmu-mir-5709	microRNA 5709	ncRNA	0.005000	0.497512			
merged_common-370	chr17	56036719	56036919	+	0.55933	NA	promoter-TSS (NM_001252471)	promoter-TSS (NM_001252471)	-160	NM_001357649	20405	Mm.1773	NM_013664	ENSMUSG00000003200	Sh3gl1	C77078|EEN|SH3P8|Sh3d2b	SH3-domain GRB2-like 1	protein-coding	0.065000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-2233	chr7	71374106	71374306	+	0.55933	NA	Intergenic	Intergenic	-535489	NR_130995	78156	Mm.243818	NR_130995	ENSMUSG00000108669	4930441H08Rik	-	RIKEN cDNA 4930441H08 gene	ncRNA	0.020000	0.398010		-8(GATACATATTTATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1010	chr16	46811590	46811790	+	0.55933	NA	Intergenic	MTB_Mm-int|LTR|ERVL-MaLR	-314723	NM_021495	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.000000	0.303483			-44(ATTTGAATTGCAAATG,-,0.00),-6(GTTTAAATAAAAAAGA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-524	chr8	122936246	122936446	+	0.51556	NA	intron (NM_001081379, intron 2 of 12)	intron (NM_001081379, intron 2 of 12)	87972	NM_007662	12555	Mm.1976	NM_007662	ENSMUSG00000031962	Cdh15	AI323380|Cdh14|Mcad	cadherin 15	protein-coding	0.005000	0.338308			
merged_common-139	chr11	29705678	29705878	+	0.51556	NA	intron (NM_194053, intron 2 of 7)	intron (NM_194053, intron 2 of 7)	12004	NM_194051	68585	Mm.192580	NM_024226	ENSMUSG00000020458	Rtn4	1110020G17Rik|AA407876|AA409940|AA960376|ASY|C130026I10Rik|NOGO|NSP-CL|NgA|Nogo-A|Nogo-B|Nogo-C|mKIAA0886|mKIAA4153	reticulon 4	protein-coding	0.000000	0.343284			-5(ATTTACATAATCATTC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-725	chr13	107049701	107049901	+	0.51556	NA	Intergenic	Intergenic	27231	NR_015471	100040322	Mm.133867	NR_015471	ENSMUSG00000071181	3830408C21Rik	-	RIKEN cDNA 3830408C21 gene	ncRNA	0.000000	0.328358			
ePOU_nocontrol_ChIP_peaks_unique-361	chr11	31899335	31899535	+	0.51556	NA	intron (NM_001290678, intron 2 of 7)	ORR1D1|LTR|ERVL-MaLR	28495	NM_001290676	67579	Mm.339792	NM_026252	ENSMUSG00000020300	Cpeb4	Cpe-bp4|Cpeb-4|mCPEB-4	cytoplasmic polyadenylation element binding protein 4	protein-coding	0.000000	0.477612			82(ACATTTTCATGTAACT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-913	chr15	81811093	81811293	+	0.51556	NA	promoter-TSS (NM_017376)	promoter-TSS (NM_017376)	-221	NM_017376	21685	Mm.270278	NM_017376	ENSMUSG00000022389	Tef	2310028D20Rik	thyrotroph embryonic factor	protein-coding	0.070000	0.601990			
merged_common-384	chr17	84716261	84716461	+	0.51556	NA	intron (NM_028233, intron 31 of 37)	intron (NM_028233, intron 31 of 37)	33240	NM_026180	67470	Mm.26581	NM_026180	ENSMUSG00000024254	Abcg8	1300003C16Rik|AI114946|sterolin-2	ATP binding cassette subfamily G member 8	protein-coding	0.020000	0.398010		82(CATTCATATTCAAG,-,0.00)	-89(ATTTCCAAAGCAAAAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-172	chr1	182455196	182455396	+	0.51556	NA	intron (NM_173378, intron 15 of 17)	B3|SINE|B2	46129	NM_173378	209456	Mm.287450	NM_173378	ENSMUSG00000026510	Trp53bp2	53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550	transformation related protein 53 binding protein 2	protein-coding	0.005000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-1683	chr3	126778070	126778270	+	0.51556	NA	intron (NM_001025439, intron 6 of 19)	intron (NM_001025439, intron 6 of 19)	165216	NM_001034168	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.005000	0.398010	-30(CATGCATAATTCAAC,+,0.00),-30(CATGCATAATTCAAC,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1885	chr5	5321010	5321210	+	0.51556	NA	intron (NM_011074, intron 2 of 14)	intron (NM_011074, intron 2 of 14)	-55042	NM_001310448	18647	Mm.389061	NM_011074	ENSMUSG00000028926	Cdk14	Pftk1|mKIAA0834	cyclin-dependent kinase 14	protein-coding	0.000000	0.398010			-29(ATTAGCATCCCAAAGA,-,0.00),3(ATCTGCATGTGAAATG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1864	chr4	145305839	145306039	+	0.51556	NA	intron (NM_009401, intron 1 of 12)	intron (NM_009401, intron 1 of 12)	9225	NM_009401	21941	Mm.12810	NM_009401	ENSMUSG00000028602	Tnfrsf8	Cd30|D1S166E|Ki|Ki-1	tumor necrosis factor receptor superfamily, member 8	protein-coding	0.000000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-2427	chr8	84856949	84857149	+	0.51556	NA	promoter-TSS (NM_025648)	promoter-TSS (NM_025648)	63	NR_152751	66590	Mm.292517	NM_025648	ENSMUSG00000003808	Farsa	0610012A19Rik|Farsla|pheRS	phenylalanyl-tRNA synthetase, alpha subunit	protein-coding	0.095000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-1766	chr4	62470925	62471125	+	0.51556	NA	promoter-TSS (NM_023597)	promoter-TSS (NM_023597)	-126	NM_023597	71354	Mm.155573	NM_023597	ENSMUSG00000028391	Wdr31	5430402I10Rik|spWD	WD repeat domain 31	protein-coding	0.060000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-1782	chr4	82572636	82572836	+	0.51556	NA	Intergenic	Intergenic	64747	NR_137202	102635783	Mm.41666	NR_137202		Gm11266	-	predicted gene 11266	ncRNA	0.015000	0.422886			-87(GTTTGCATGATAAGGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2149	chr6	119424232	119424432	+	0.51556	NA	Intergenic	Lx9|LINE|L1	-6804	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.000000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-2384	chr8	49205125	49205325	+	0.51556	NA	Intergenic	Intergenic	-530535	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.010000	0.412935			-4(ATATACAAGGCAAATG,-,0.00),35(ATATACAAGGCAAACG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1300	chr19	41270754	41270954	+	0.51556	NA	Intergenic	Intergenic	-6850	NM_133352	107358	Mm.246440	NM_133352	ENSMUSG00000025016	Tm9sf3	1810073M23Rik|2810031D16Rik|AI115521|AI413748|AW146116|AW549777|Smbp|mKIAA4036	transmembrane 9 superfamily member 3	protein-coding	0.005000	0.383085			
merged_common-408	chr18	51239442	51239642	+	0.51556	NA	intron (NM_001081224, intron 1 of 1)	intron (NM_001081224, intron 1 of 1)	121644	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.000000	0.398010			
merged_common-827	chr9	49148361	49148561	+	0.51556	NA	Intergenic	(CCCA)n|Simple_repeat|Simple_repeat	45682	NM_030709	80893	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0.000000	0.393035		61(AATGCATATTCATT,+,0.00),61(AATGCATATTCATT,-,0.00)	
merged_common-615	chr4	134516820	134517020	+	0.51556	NA	intron (NM_001081099, intron 1 of 2)	intron (NM_001081099, intron 1 of 2)	5921	NM_001081099	69885	Mm.141592	NM_001081099	ENSMUSG00000078521	Aunip	2610002D18Rik|Clhc1	aurora kinase A and ninein interacting protein	protein-coding	0.000000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-2147	chr6	117675571	117675771	+	0.51556	NA	Intergenic	Intergenic	76098	NR_045731	72263	Mm.443289	NR_045731	ENSMUSG00000099869	1700030F04Rik	-	RIKEN cDNA 1700030F04 gene	ncRNA	0.025000	0.562189			
merged_common-53	chr1	150115521	150115721	+	0.51556	NA	Intergenic	Intergenic	15590	NM_011198	19225	Mm.292547	NM_011198	ENSMUSG00000032487	Ptgs2	COX2|Cox-2|PES-2|PGHS-2|PHS II|PHS-2|Pghs2|TIS10|gripghs	prostaglandin-endoperoxide synthase 2	protein-coding	0.015000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-2205	chr7	35617547	35617747	+	0.51556	NA	intron (NM_001358876, intron 17 of 27)	RLTR11A2|LTR|ERVK	29835	NM_019746	56330	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.015000	0.452736			-17(ATTTGCATAACAAAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2326	chr7	141228474	141228674	+	0.51556	NA	promoter-TSS (NM_001081118)	promoter-TSS (NM_001081118)	-214	NM_001081118	101471	Mm.248656	NM_207211	ENSMUSG00000038611	Phrf1	AA673488	PHD and ring finger domains 1	protein-coding	0.060000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-1246	chr18	83840983	83841183	+	0.51556	NA	Intergenic	Intergenic	245382	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|teashirt1	teashirt zinc finger family member 1	protein-coding	0.015000	0.532338			
ePOU_nocontrol_ChIP_peaks_unique-1145	chr17	80701981	80702181	+	0.51556	NA	intron (NM_001290345, intron 1 of 33)	intron (NM_001290345, intron 1 of 33)	25944	NM_001360278	225028	Mm.311948	NM_001081357	ENSMUSG00000024242	Map4k3	4833416M01Rik|4833416M07Rik|9530052P13Rik|Glk|MAPKKKK3|MEKKK 3|MEKKK3|RAB8IPL1	mitogen-activated protein kinase kinase kinase kinase 3	protein-coding	0.000000	0.368159	-45(CATAAATAATGCAGA,+,0.00),-45(CATAAATAATGCAGA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2614	chr9	120511834	120512034	+	0.51556	NA	Intergenic	B3|SINE|B2	19328	NM_026892	68969	Mm.28753	NM_026892	ENSMUSG00000006941	Eif1b	1500010M16Rik|3110001N14Rik|Gc20	eukaryotic translation initiation factor 1B	protein-coding	0.000000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-2073	chr6	47595158	47595358	+	0.51556	NA	promoter-TSS (NM_001146689)	promoter-TSS (NM_001146689)	-228	NM_007971	14056	Mm.246688	NM_007971	ENSMUSG00000029687	Ezh2	Enx-1|Enx1h|KMT6|mKIAA4065	enhancer of zeste 2 polycomb repressive complex 2 subunit	protein-coding	0.085000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-15	chr1	36369156	36369356	+	0.51556	NA	promoter-TSS (NM_001310513)	promoter-TSS (NM_001310513)	-75	NM_001310513	226976	Mm.24734	NM_172652	ENSMUSG00000010453	Kansl3	4632411B12Rik|4932435K23|AI431067|AI647574|C85723|Kiaa1310|mKIAA1310	KAT8 regulatory NSL complex subunit 3	protein-coding	0.130000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-2081	chr6	50950262	50950462	+	0.51556	NA	Intergenic	Intergenic	43956	NR_157241	102633851	Mm.393702	NR_157241		Gm31579	Gm44400	predicted gene, 31579	ncRNA	0.015000	0.432836	42(TTTGCATTATTTATG,+,0.00),42(TTTGCATTATTTATG,-,0.00)		-95(TTTCTGCCTTGCAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-307	chr2	79710896	79711096	+	0.51556	NA	intron (NR_110980, intron 2 of 2)	intron (NR_110980, intron 2 of 2)	3216	NM_172420	75276	Mm.257373	NM_172420	ENSMUSG00000034683	Ppp1r1c	4930565M23Rik|4930579P15Rik	protein phosphatase 1, regulatory inhibitor subunit 1C	protein-coding	0.030000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-687	chr13	75702853	75703053	+	0.51556	NA	Intergenic	RMER4A|LTR|ERVK	-4531	NM_138953	192657	Mm.21288	NM_138953	ENSMUSG00000001542	Ell2	-	elongation factor RNA polymerase II 2	protein-coding	0.020000	0.452736			29(CTATTGTTATTCATTT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1054	chr17	10365875	10366075	+	0.51556	NA	Intergenic	L1MD3|LINE|L1	41373	NR_045461	76634	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.015000	0.592040		59(CATGAATATGCATG,+,0.00),59(CATGAATATGCATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-279	chr10	85871696	85871896	+	0.51556	NA	promoter-TSS (NM_133993)	promoter-TSS (NM_133993)	-35	NM_133993	103136	Mm.18834	NM_133993	ENSMUSG00000001785	Pwp1	2310058A11Rik|2610205J09Rik|AI098170|AL022879|AV083409|AW550690	PWP1 homolog, endonuclein	protein-coding	0.070000	0.582090			-8(CCCATCTCATGCAAAT,+,0.00)
merged_common-646	chr5	80203704	80203904	+	0.51556	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-816767	NM_001347369	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.010000	0.343284			
merged_common-504	chr2	144368969	144369169	+	0.51556	NA	promoter-TSS (NM_001166640)	promoter-TSS (NM_001166640)	34	NM_181417	228714	Mm.227925	NM_181417	ENSMUSG00000027425	Kat14	2510008M08Rik|ATAC2|AU023459|Csrp2bp|D2Ertd473e|D2Wsu131e|E430020F17	lysine acetyltransferase 14	protein-coding	0.155000	0.766169			
merged_common-275	chr14	90577769	90577969	+	0.51556	NA	Intergenic	RLTR22_Mur|LTR|ERVK	450978	NR_045712	74967	Mm.390704	NR_045712	ENSMUSG00000115001	4930474H20Rik	-	RIKEN cDNA 4930474H20 gene	ncRNA	0.005000	0.343284			
merged_common-256	chr14	32570978	32571178	+	0.51556	NA	intron (NM_001081221, intron 18 of 20)	intron (NM_001081221, intron 18 of 20)	-28330	NM_001347590	107751	Mm.119274	NM_001001796	ENSMUSG00000041730	Prrxl1	Drg11|Drgx	paired related homeobox protein-like 1	protein-coding	0.000000	0.353234		11(CATGCATATGTAAA,+,0.00),11(CATGCATATGTAAA,-,0.00)	-2(CCTTTGTCATTCACAT,+,0.00),4(TCATTCACATGCATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-997	chr16	38562552	38562752	+	0.51556	NA	promoter-TSS (NM_001205287)	promoter-TSS (NM_001205287)	-162	NM_001205287	67846	Mm.310476	NM_026407	ENSMUSG00000002845	Tmem39a	2610033C09Rik	transmembrane protein 39a	protein-coding	0.055000	0.522388			
Oct4_nocontrol_ChIP_peaks_unique-305	chr2	68283369	68283569	+	0.51556	NA	intron (NM_016866, intron 14 of 17)	intron (NM_016866, intron 14 of 17)	178797	NM_020283	26877	Mm.226435	NM_020283	ENSMUSG00000034780	B3galt1	beta3Gal-T1	UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 1	protein-coding	0.010000	0.442786			
merged_common-510	chr2	157332163	157332363	+	0.51556	NA	intron (NM_001329683, intron 3 of 4)	intron (NM_001329683, intron 3 of 4)	5163	NM_001329683	14601	Mm.389327	NM_010285	ENSMUSG00000027643	Ghrh	GRF|Ghrf	growth hormone releasing hormone	protein-coding	0.015000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-1914	chr5	33782712	33782912	+	0.51556	NA	promoter-TSS (NM_019694)	promoter-TSS (NM_019694)	-95	NM_019694	56384	Mm.260538	NM_019694	ENSMUSG00000005299	Letm1	-	leucine zipper-EF-hand containing transmembrane protein 1	protein-coding	0.090000	0.676617			
merged_common-85	chr10	21102077	21102277	+	0.51556	NA	Intergenic	Intergenic	58807	NM_001198914	17863	Mm.52109	NM_010848	ENSMUSG00000019982	Myb	AI550390|M16449|c-myb	myeloblastosis oncogene	protein-coding	0.005000	0.427861			-100(TATTTGACATGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1201	chr18	49594867	49595067	+	0.51556	NA	Intergenic	Intergenic	71678	NR_033785	67321	Mm.245802	NR_033785	ENSMUSG00000100297	1700044K03Rik	-	RIKEN cDNA 1700044K03 gene	ncRNA	0.000000	0.368159	35(AATGCATAATTCATA,+,0.00),35(AATGCATAATTCATA,-,0.00)		5(ATATTGTTATGCATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-364	chr11	32847447	32847647	+	0.51556	NA	Intergenic	Intergenic	-22953	NM_027050	69351	Mm.65488	NM_027050	ENSMUSG00000020270	Smim23	1700008A04Rik	small integral membrane protein 23	protein-coding	0.005000	0.388060			34(ATTTCAATAACACAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-408	chr11	61854311	61854511	+	0.51556	NA	intron (NM_013881, intron 1 of 26)	CpG	681	NM_013881	29869	Mm.162025	NM_013881	ENSMUSG00000004798	Ulk2	A830085I22Rik|AU015340|Unc51.2|mKIAA0623	unc-51 like kinase 2	protein-coding	0.085000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-425	chr11	69901728	69901928	+	0.51556	NA	promoter-TSS (NM_001316698)	promoter-TSS (NM_001316698)	12	NM_001291119	216860	Mm.268347	NM_001013414	ENSMUSG00000047284	Neurl4	-	neuralized E3 ubiquitin protein ligase 4	protein-coding	0.130000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-1545	chr3	21728106	21728306	+	0.51556	NA	Intergenic	Intergenic	-348446	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.005000	0.432836			38(CCCTTGTTGTGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-882	chr15	59804152	59804352	+	0.51556	NA	Intergenic	Intergenic	-9293	NR_045076	100503021	Mm.402924	NR_045076	ENSMUSG00000115426	Gm19510	-	predicted gene, 19510	ncRNA	0.000000	0.427861			
merged_common-737	chr7	65454288	65454488	+	0.51556	NA	Intergenic	MER21C|LTR|ERVL	-83144	NM_009386	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.005000	0.507463			-36(TCTTTGTTATGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1038	chr16	96063837	96064037	+	0.51556	NA	intron (NM_001103179, intron 8 of 40)	intron (NM_001103179, intron 8 of 40)	18491	NM_145125	93871	Mm.240871	NM_145125	ENSMUSG00000022914	Brwd1	5330419I02Rik|D530019K20Rik|G1-403-16|Wdr9|repro5	bromodomain and WD repeat domain containing 1	protein-coding	0.000000	0.398010			-98(ATTTGCATGACAACTG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-67	chr1	81759489	81759689	+	0.51556	NA	Intergenic	Intergenic	-372327	NR_105762	102466629		NR_105762	ENSMUSG00000098797	Mir6344	Gm27840|mmu-mir-6344	microRNA 6344	ncRNA	0.000000	0.293532			
ePOU_nocontrol_ChIP_peaks_unique-282	chr10	88062509	88062709	+	0.51556	NA	Intergenic	Intergenic	-28463	NM_029971	110312	Mm.391436	NM_029971	ENSMUSG00000035383	Pmch	A230109K23Rik	pro-melanin-concentrating hormone	protein-coding	0.000000	0.303483		-81(TCTGCATATTTATT,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-700	chr13	93420076	93420276	+	0.51556	NA	Intergenic	Intergenic	79632	NM_021310	57748	Mm.100273	NM_021310	ENSMUSG00000021690	Jmy	-	junction-mediating and regulatory protein	protein-coding	0.015000	0.308458		-46(CATTCATATTTATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-228	chr10	39452094	39452294	+	0.51556	NA	intron (NM_001122892, intron 2 of 12)	intron (NM_001122892, intron 2 of 12)	82395	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.010000	0.432836			
merged_common-157	chr11	78806486	78806686	+	0.51556	NA	Intergenic	Intergenic	-20009	NM_001076681	66274	Mm.258932	NM_001076681	ENSMUSG00000072640	Lyrm9	1810012P15Rik	LYR motif containing 9	protein-coding	0.015000	0.417910			
merged_common-559	chr3	119588971	119589171	+	0.51556	NA	Intergenic	Intergenic	194317	NM_019550	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.020000	0.442786			79(ATTACCATGAGAATTT,-,0.00)
merged_common-773	chr8	21783620	21783820	+	0.51556	NA	intron (NM_007843, intron 1 of 1)	L1M2|LINE|L1	7165	NM_007843	13214	Mm.431316	NM_007843	ENSMUSG00000044748	Defb1	AW260221|BD-1	defensin beta 1	protein-coding	0.005000	0.318408	-13(CATAAATTATGCAGG,+,0.00),-13(CATAAATTATGCAGG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2201	chr7	30492909	30493109	+	0.51556	NA	promoter-TSS (NM_019546)	promoter-TSS (NM_019546)	-649	NM_019546	56189	Mm.270525	NM_019546	ENSMUSG00000036892	Prodh2	2510028N04Rik|2510038B11Rik|HYPDH|MmPOX|MmPOX1|POX1	proline dehydrogenase (oxidase) 2	protein-coding	0.015000	0.398010			-7(CGTTTGTTATGCAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2074	chr6	47813318	47813518	+	0.51556	NA	promoter-TSS (NM_009787)	promoter-TSS (NM_009787)	94	NM_009787	12304	Mm.2442	NM_009787	ENSMUSG00000025823	Pdia4	AI987846|Cai|ERp-72|Erp72	protein disulfide isomerase associated 4	protein-coding	0.115000	0.716418			
merged_common-232	chr13	44354812	44355012	+	0.51556	NA	Intergenic	Intergenic	-84815	NR_045489	69491	Mm.392410	NR_045489	ENSMUSG00000098144	1700029N11Rik	-	RIKEN cDNA 1700029N11 gene	ncRNA	0.010000	0.447761	-71(CATGCATAAATCATG,+,0.00),-71(CATGCATAAATCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-495	chr11	119868300	119868500	+	0.51556	NA	intron (NM_001306081, intron 20 of 32)	(TG)n|Simple_repeat|Simple_repeat	-13889	NR_039557	100628577		NR_039557	ENSMUSG00000093061	Mir5098	mmu-mir-5098|mu-mir-5098	microRNA 5098	ncRNA	0.010000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-895	chr15	75833411	75833611	+	0.51556	NA	intron (NM_172121, intron 3 of 11)	AT_rich|Low_complexity|Low_complexity	8397	NM_172121	223642	Mm.209800	NM_172121	ENSMUSG00000075600	Zc3h3	BC049953|Kiaa0150|Smicl|Zc3hdc3	zinc finger CCCH type containing 3	protein-coding	0.010000	0.353234	25(TTTACATAATTCATT,+,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2585	chr9	105053201	105053401	+	0.51556	NA	promoter-TSS (NM_001364512)	promoter-TSS (NM_001364512)	33	NM_001364512	94062	Mm.29746	NM_053159	ENSMUSG00000032563	Mrpl3	2010320L16Rik|5930422H18Rik|AA407889|L3mt	mitochondrial ribosomal protein L3	protein-coding	0.100000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-1439	chr2	112203220	112203420	+	0.51556	NA	Intergenic	Lx9|LINE|L1	-36521	NM_207206	99010	Mm.33438	NM_207206	ENSMUSG00000027134	Lpcat4	AI505034|Agpat7|Aytl3|LPEAT2	lysophosphatidylcholine acyltransferase 4	protein-coding	0.010000	0.398010			
merged_common-165	chr11	89579226	89579426	+	0.51556	NA	intron (NM_001327810, intron 2 of 19)	intron (NM_001327810, intron 2 of 19)	117610	NM_001327810	382543	Mm.60997	NM_172534	ENSMUSG00000047773	Ankfn1	4932411E22Rik|Gm1175|nmf9	ankyrin-repeat and fibronectin type III domain containing 1	protein-coding	0.015000	0.373134			-28(CCATTTTAATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-924	chr15	91092449	91092649	+	0.51556	NA	Intergenic	Intergenic	-42598	NM_016705	16564	Mm.41379	NM_016705	ENSMUSG00000022629	Kif21a	-	kinesin family member 21A	protein-coding	0.015000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-777	chr14	50741937	50742137	+	0.51556	NA	intron (NM_020288, intron 1 of 1)	intron (NM_020288, intron 1 of 1)	2287	NM_020288	56858	Mm.103732	NM_020288	ENSMUSG00000059069	Olfr749	MOR106-1|ORL461|Ors1	olfactory receptor 749	protein-coding	0.005000	0.368159			
Oct4_nocontrol_ChIP_peaks_unique-209	chr15	58823629	58823829	+	0.51556	NA	promoter-TSS (NM_175212)	promoter-TSS (NM_175212)	-302	NM_175212	74868	Mm.293754	NM_175212	ENSMUSG00000062373	Tmem65	2610029O13Rik|4930438D12Rik	transmembrane protein 65	protein-coding	0.065000	0.641791			
merged_common-327	chr16	30064099	30064299	+	0.51556	NA	Intergenic	CpG	-1158	NM_008235	15205	Mm.390859	NM_008235	ENSMUSG00000022528	Hes1	Hry|bHLHb39	hes family bHLH transcription factor 1	protein-coding	0.100000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-2096	chr6	66535214	66535414	+	0.51556	NA	promoter-TSS (NM_019499)	promoter-TSS (NM_019499)	93	NM_001355624	56150	Mm.489653	NM_019499	ENSMUSG00000029910	Mad2l1	AA673185|MAD2	MAD2 mitotic arrest deficient-like 1	protein-coding	0.070000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-2636	chrX	87028923	87029123	+	0.51556	NA	intron (NM_001160403, intron 6 of 10)	ORR1D1|LTR|ERVL-MaLR	-674029	NR_036689	245502	Mm.490821	NR_036689		Gm41	-	melanoma antigen, family B, 4 pseudogene	pseudo	0.005000	0.378109		29(TATGCATATCTATG,-,0.00)	-58(GTTTGAATAAGAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1960	chr5	100335674	100335874	+	0.51556	NA	Intergenic	RCHARR1|DNA|hAT-Charlie	33404	NR_152163	545785		NR_152163		Gm45913	-	predicted gene, 45913	ncRNA	0.025000	0.432836			78(TCATTAGCATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2383	chr8	48861037	48861237	+	0.51556	NA	Intergenic	Intergenic	-186447	NM_011857	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.015000	0.333333		84(TATAAATATTAATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-259	chr10	70132235	70132435	+	0.51556	NA	intron (NM_001111121, intron 1 of 8)	MLT1B|LTR|ERVL-MaLR	35214	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.010000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-1338	chr2	16845756	16845956	+	0.51556	NA	Intergenic	Intergenic	167870	NR_040632	75069	Mm.50378	NR_040632		4930515L03Rik	-	RIKEN cDNA 4930515L03 gene	ncRNA	0.010000	0.338308			
merged_common-707	chr6	86526452	86526652	+	0.51556	NA	promoter-TSS (NM_011865)	promoter-TSS (NM_011865)	-363	NM_011865	23983	Mm.274146	NM_011865	ENSMUSG00000051695	Pcbp1	WBP17|[a]CP-1|alphaCP-1|hnRNP E1|hnRNP-E1	poly(rC) binding protein 1	protein-coding	0.135000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-502	chr11	121742958	121743158	+	0.51556	NA	Intergenic	Intergenic	40631	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.000000	0.323383			
merged_common-361	chr17	31564445	31564645	+	0.51556	NA	promoter-TSS (NM_016670)	promoter-TSS (NM_016670)	-228	NM_016670	18771	Mm.259295	NM_016670	ENSMUSG00000006705	Pknox1	D17Wsu76e|PREP1	Pbx/knotted 1 homeobox	protein-coding	0.085000	0.746269			
merged_common-63	chr1	167116836	167117036	+	0.48940	NA	Intergenic	Intergenic	115519	NM_001160261	226610	Mm.389217	NM_175461	ENSMUSG00000060568	Fam78b	C030014K22Rik|C030020L09Rik	family with sequence similarity 78, member B	protein-coding	0.005000	0.393035			-57(CATTTGCATTGCAAAT,+,0.00),-56(ATTTGCATTGCAAATG,-,0.00)
merged_common-353	chr17	15208225	15208425	+	0.48940	NA	Intergenic	Intergenic	32458	NR_046164	328747	Mm.256835	NR_046164	ENSMUSG00000097624	Gm5091	C330048F19	predicted gene 5091	ncRNA	0.040000	0.552239			-55(ATTTGCATGACAAAAG,-,0.00)
merged_common-183	chr11	117697995	117698195	+	0.47007	NA	intron (NM_198022, intron 1 of 21)	intron (NM_198022, intron 1 of 21)	43806	NM_198022	217351	Mm.40272	NM_198022	ENSMUSG00000025571	Tnrc6c	9930033H14Rik|mKIAA1582	trinucleotide repeat containing 6C	protein-coding	0.005000	0.432836			-58(GCTTTGTCATGTAAAC,+,0.00),-12(CTTTACTGTTGCAGAT,+,0.00)
merged_common-704	chr6	83721245	83721445	+	0.47007	NA	intron (NM_011912, intron 1 of 2)	U6|snRNA|snRNA	-9144	NR_002871	574519	Mm.487605	NR_002871	ENSMUSG00000085794	Vax2os	Vas2os|Vax2os1|Vax2os2	ventral anterior homeobox 2, opposite strand	ncRNA	0.000000	0.427861		-46(CATGCATATGCATA,+,0.00),-46(CATGCATATGCATA,-,0.00)	
merged_common-334	chr16	68025837	68026037	+	0.47007	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-405029	NM_001145977	239857	Mm.394300	NM_178721	ENSMUSG00000064115	Cadm2	2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2	cell adhesion molecule 2	protein-coding	0.005000	0.293532		-20(TATATATATGCATA,+,0.00),2(TATACATATACATA,-,0.00)	
merged_common-630	chr5	21732300	21732500	+	0.47007	NA	Intergenic	Intergenic	-4760	NM_028431	73078	Mm.301655	NM_028431	ENSMUSG00000029017	Pmpcb	3110004O18Rik|MPP11|MPPB|MPPP52	peptidase (mitochondrial processing) beta	protein-coding	0.000000	0.417910			-35(ATTACCATAACAAAAT,-,0.00),-13(ATGTCCATAACAAAAA,-,0.00)
merged_common-158	chr11	83455037	83455237	+	0.47007	NA	intron (NM_172797, intron 1 of 7)	intron (NM_172797, intron 1 of 7)	7903	NM_080453	118453	Mm.264648	NM_080453	ENSMUSG00000020682	Mmp28	D130023P12	matrix metallopeptidase 28 (epilysin)	protein-coding	0.015000	0.437811		-54(CATGCTTATGCATA,+,0.00),-54(CATGCTTATGCATA,-,0.00),58(GATACATATGCAGA,-,0.00)	
merged_common-656	chr5	109558174	109558374	+	0.44515	NA	intron (NM_001310694, intron 1 of 7)	intron (NM_001310694, intron 1 of 7)	719	NM_001310694	57914	Mm.35771	NM_016715	ENSMUSG00000033467	Crlf2	CRLM2|Ly114|Tpte2|Tslpr	cytokine receptor-like factor 2	protein-coding	0.030000	0.432836		-82(TCTGCATATTCATG,+,0.00),-82(TCTGCATATTCATG,-,0.00),-11(TATGCAAATGCATA,+,0.00),-11(TATGCAAATGCATA,-,0.00)	
merged_common-343	chr16	92464136	92464336	+	0.43726	NA	intron (NM_001081549, intron 1 of 3)	(CTATG)n|Simple_repeat|Simple_repeat	1933	NM_001081549	54720	Mm.265744	NM_019466	ENSMUSG00000022951	Rcan1	Adapt78|CALP1L|CSP1|DSC1|Dscr1|MCIP1|RCN1	regulator of calcineurin 1	protein-coding	0.010000	0.328358	-43(GCTGTATTATGCATA,+,0.00),-27(ACTACATTATGCATA,+,0.00),-27(ACTACATTATGCATA,-,0.00),-11(GCTGTATTATGCATA,+,0.00),21(ACTGTATTATGCATA,+,0.00),37(GCTGTATTATGCATA,+,0.00),53(GTTGTATTATGCATA,+,0.00)		-43(GCTGTATTATGCATAT,+,0.00),-11(GCTGTATTATGCATAT,+,0.00),37(GCTGTATTATGCATAT,+,0.00),69(GCTATATCATGCATAT,+,0.00)
merged_common-527	chr3	49700321	49700521	+	0.43723	NA	Intergenic	Intergenic	56895	NM_130448	73173	Mm.87246	NM_130448	ENSMUSG00000037892	Pcdh18	3110038E07Rik|BB095589|PCDH68L	protocadherin 18	protein-coding	0.005000	0.393035			51(GCATTTTTATGTATAT,+,0.00)
merged_common-402	chr18	42308167	42308367	+	0.43723	NA	intron (NM_172626, intron 8 of 19)	intron (NM_172626, intron 8 of 19)	32914	NM_172626	225432	Mm.329400	NM_172626	ENSMUSG00000024491	Rbm27	A730010I06|AI043120|Psc1|mKIAA1311	RNA binding motif protein 27	protein-coding	0.005000	0.402985			-45(CTTTTGTCATGCAAAC,+,0.00)
merged_common-634	chr5	34083008	34083208	+	0.42542	NA	intron (NM_181857, intron 15 of 24)	RMER12|LTR|ERVK	-35632	NR_040703	75357	Mm.410806	NR_040703	ENSMUSG00000106902	4930557J02Rik	-	RIKEN cDNA 4930557J02 gene	ncRNA	0.000000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-599	chr12	98404292	98404492	+	0.41259	NA	Intergenic	Intergenic	-119452	NR_136759	105245437	Mm.446375	NR_136759	ENSMUSG00000113613	Gm40893	-	predicted gene, 40893	ncRNA	0.010000	0.383085			32(TCTTTGTGTTGCTATT,+,0.00),44(TATTTGTTATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2078	chr6	50715000	50715200	+	0.41259	NA	Intergenic	Intergenic	-60655	NM_021892	60531	Mm.157158	NM_021892	ENSMUSG00000029831	Npvf	Rfrp	neuropeptide VF precursor	protein-coding	0.020000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-504	chr12	4082445	4082645	+	0.41259	NA	promoter-TSS (NM_153082)	promoter-TSS (NM_153082)	-29	NM_153082	217378	Mm.271656	NM_153082	ENSMUSG00000020657	Dnajc27	AI639580|C330021A05Rik|Rabj|Rbj	DnaJ heat shock protein family (Hsp40) member C27	protein-coding	0.110000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-360	chr11	31762843	31763043	+	0.41259	NA	Intergenic	Intergenic	61604	NR_102314	414116	Mm.150222	NR_102310	ENSMUSG00000085772	D630024D03Rik	-	RIKEN cDNA D630024D03 gene	ncRNA	0.005000	0.402985			-41(TTTTGCATGACAATAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-389	chr11	53705190	53705390	+	0.41259	NA	intron (NM_009012, intron 2 of 24)	intron (NM_009012, intron 2 of 24)	2029	NM_009012	19360	Mm.4888	NM_009012	ENSMUSG00000020380	Rad50	Mrell|Rad50l	RAD50 double strand break repair protein	protein-coding	0.010000	0.303483			
ePOU_nocontrol_ChIP_peaks_unique-688	chr13	75906047	75906247	+	0.41259	NA	intron (NM_028493, intron 6 of 11)	intron (NM_028493, intron 6 of 11)	37677	NM_028493	73296	Mm.276200	NM_028493	ENSMUSG00000021589	Rhobtb3	1700040C17Rik|2610033K01Rik|4930503C18Rik|AI317148|AW208826|mKIAA0878	Rho-related BTB domain containing 3	protein-coding	0.010000	0.388060			73(ATCTAAATAACAAGGC,-,0.00)
merged_common-133	chr11	20201092	20201292	+	0.41259	NA	promoter-TSS (NM_008996)	promoter-TSS (NM_008996)	-220	NM_008996	19324	Mm.271944	NM_008996	ENSMUSG00000020149	Rab1a	Gtbp|Rab-1|Rab1|Ypt1|mKIAA3012	RAB1A, member RAS oncogene family	protein-coding	0.075000	0.661692			
Oct4_nocontrol_ChIP_peaks_unique-396	chr4	123842505	123842705	+	0.41259	NA	Intergenic	B2_Mm2|SINE|B2	28974	NM_001356445	230726	Mm.37334	NM_183163	ENSMUSG00000043333	Rhbdl2	9130416B15|RRP2	rhomboid like 2	protein-coding	0.015000	0.388060			-44(GTTTTGTTTTTTAAAG,+,0.00),-28(ATTTACTTATGTATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-127	chr1	153024805	153025005	+	0.41259	NA	intron (NM_175460, intron 1 of 10)	L1ME2|LINE|L1	69804	NM_175460	226518	Mm.40548	NM_175460	ENSMUSG00000042751	Nmnat2	AI843915|D030041I09Rik|PNAT1|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding	0.010000	0.343284			72(GCATTGTTATGGAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1299	chr19	38758402	38758602	+	0.41259	NA	intron (NM_019588, intron 21 of 31)	intron (NM_019588, intron 21 of 31)	60735	NM_021315	57753	Mm.86482	NM_021315	ENSMUSG00000024999	Noc3l	AF233884|Fad24	NOC3 like DNA replication regulator	protein-coding	0.000000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-1229	chr18	69577841	69578041	+	0.41259	NA	intron (NM_001361127, intron 8 of 19)	intron (NM_001361127, intron 8 of 19)	231781	NM_001361128	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.005000	0.318408			
ePOU_nocontrol_ChIP_peaks_unique-993	chr16	34573674	34573874	+	0.41259	NA	Intergenic	CpG	-59747	NM_177357	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.145000	0.815920			
ePOU_nocontrol_ChIP_peaks_unique-1601	chr3	68513982	68514182	+	0.41259	NA	intron (NM_001282044, intron 2 of 7)	intron (NM_001282044, intron 2 of 7)	19901	NM_001282044	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.005000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-1314	chr19	47837288	47837488	+	0.41259	NA	promoter-TSS (NM_027559)	promoter-TSS (NM_027559)	-27	NM_027559	100048534	Mm.29457	NM_027559	ENSMUSG00000044948	Cfap43	4632415N18Rik|4930428C11Rik|4930463G05Rik|AI429486|D19Ertd652e|Wdr96	cilia and flagella associated protein 43	protein-coding	0.125000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-1738	chr4	33248640	33248840	+	0.41259	NA	promoter-TSS (NM_001033225)	promoter-TSS (NM_001033225)	47	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.055000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-2102	chr6	72352828	72353028	+	0.41259	NA	3' UTR (NM_026696, exon 4 of 4)	3' UTR (NM_026696, exon 4 of 4)	-2555	NM_144916	232086	Mm.491165	NM_144916	ENSMUSG00000055912	Tmem150a	BC014685|Tmem150	transmembrane protein 150A	protein-coding	0.005000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-1853	chr4	134287255	134287455	+	0.41259	NA	promoter-TSS (NM_001163794)	promoter-TSS (NM_001163794)	-102	NM_001163794	230809	Mm.22778	NM_146156	ENSMUSG00000050890	Pdik1l	BC027088|stk35l2	PDLIM1 interacting kinase 1 like	protein-coding	0.170000	0.791045			
ePOU_nocontrol_ChIP_peaks_unique-1735	chr4	31568831	31569031	+	0.41259	NA	Intergenic	Intergenic	-395176	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.005000	0.348259	15(GATGAATCATACATG,-,0.00)	-19(CATGAAAATGTATT,+,0.00)	
merged_common-631	chr5	24577440	24577640	+	0.41259	NA	promoter-TSS (NM_001190443)	promoter-TSS (NM_001190443)	-73	NM_013853	27407	Mm.21629	NM_013853	ENSMUSG00000028953	Abcf2	0710005O05Rik|Drr3|E430001O06	ATP-binding cassette, sub-family F (GCN20), member 2	protein-coding	0.080000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-429	chr11	76406826	76407026	+	0.41259	NA	promoter-TSS (NM_019818)	promoter-TSS (NM_019818)	1	NR_111896	56322	Mm.18803	NM_019818	ENSMUSG00000020843	Timm22	Tim22	translocase of inner mitochondrial membrane 22	protein-coding	0.035000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-1051	chr17	9580016	9580216	+	0.41259	NA	Intergenic	Intergenic	89588	NM_001163836	67543	Mm.26987	NM_026226	ENSMUSG00000046173	Pabpc6	4932702K14Rik|AI428050|Pabpc3	poly(A) binding protein, cytoplasmic 6	protein-coding	0.010000	0.427861			70(ATTTACATTTCAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1845	chr4	128610111	128610311	+	0.41259	NA	promoter-TSS (NM_177758)	promoter-TSS (NM_177758)	-113	NM_177758	269585	Mm.153291	NM_177758	ENSMUSG00000061894	Zscan20	C130001F22|Zfp31|Zkscan20	zinc finger and SCAN domains 20	protein-coding	0.065000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-2110	chr6	84082110	84082310	+	0.41259	NA	intron (NM_001310152, intron 13 of 53)	Lx2|LINE|L1	62824	NM_021469	26903	Mm.220982	NM_021469	ENSMUSG00000033788	Dysf	2310004N10Rik|AI604795|D6Pas3	dysferlin	protein-coding	0.005000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-2129	chr6	100505593	100505793	+	0.41259	NA	Intergenic	Intergenic	-21707	NR_040525	73395	Mm.69413	NR_040525	ENSMUSG00000101553	1700049E22Rik	-	RIKEN cDNA 1700049E22 gene	ncRNA	0.025000	0.452736			-17(TTTTGCAAAACAAAGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-485	chr11	116087076	116087276	+	0.41259	NA	promoter-TSS (NM_016852)	promoter-TSS (NM_016852)	-181	NM_016852	22378	Mm.284792	NM_016852	ENSMUSG00000034341	Wbp2	-	WW domain binding protein 2	protein-coding	0.035000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-1583	chr3	56981298	56981498	+	0.41259	NA	Intergenic	Intergenic	320590	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.005000	0.452736			-53(GGTTGTTCATTCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-261	chr10	76468768	76468968	+	0.41259	NA	promoter-TSS (NM_019434)	promoter-TSS (NM_019434)	-34	NM_019434	54387	Mm.30098	NM_019434	ENSMUSG00000001150	Mcm3ap	GANP	minichromosome maintenance complex component 3 associated protein	protein-coding	0.090000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-2131	chr6	101544391	101544591	+	0.41259	NA	Intergenic	L2b|LINE|L2	-166594	NM_018884	55983	Mm.321654	NM_018884	ENSMUSG00000035357	Pdzrn3	1110020C07Rik|AI429718|AL023082|LNX3|SEMACAP3|Semcap3	PDZ domain containing RING finger 3	protein-coding	0.005000	0.417910		-83(TTTGAATATGTATT,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1730	chr4	24548659	24548859	+	0.41259	NA	intron (NM_199467, intron 13 of 23)	MIRb|SINE|MIR	52308	NR_149739	212377	Mm.120919	NM_199467	ENSMUSG00000045751	Mms22l	F730047E07Rik|Gm134	MMS22-like, DNA repair protein	protein-coding	0.000000	0.353234	17(CATGACTAATGCATG,+,0.00),17(CATGACTAATGCATG,-,0.00)		-35(ATGTACATAATAATAT,-,0.00)
merged_common-802	chr8	93292634	93292834	+	0.41259	NA	Intergenic	L1M2|LINE|L1	-12998	NM_144930	234564	Mm.29110	NM_144930	ENSMUSG00000031725	Ces1f	AU018778|CesML1|TGH-2	carboxylesterase 1F	protein-coding	0.000000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-1437	chr2	107965675	107965875	+	0.41259	NA	Intergenic	MIRb|SINE|MIR	675186	NM_021275	16492	Mm.142718	NM_021275	ENSMUSG00000042604	Kcna4	Kv1.4	potassium voltage-gated channel, shaker-related subfamily, member 4	protein-coding	0.000000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-852	chr15	25761953	25762153	+	0.41259	NA	intron (NM_001353142, intron 1 of 20)	intron (NM_001353142, intron 1 of 20)	8847	NM_001353142	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.010000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-1508	chr2	157279043	157279243	+	0.41259	NA	promoter-TSS (NM_019642)	promoter-TSS (NM_019642)	45	NM_019642	20014	Mm.22130	NM_019642	ENSMUSG00000027642	Rpn2	1300012C06Rik|AV261018|Rpn-2	ribophorin II	protein-coding	0.115000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-1170	chr18	22500079	22500279	+	0.41259	NA	intron (NM_001167777, intron 9 of 12)	intron (NM_001167777, intron 9 of 12)	155090	NM_001167777	211961	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3, transcriptional regulator	protein-coding	0.005000	0.363184			-37(CTTTTATTATGAAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1689	chr3	130709362	130709562	+	0.41259	NA	promoter-TSS (NM_025509)	promoter-TSS (NM_025509)	-18	NM_025509	66357	Mm.300697	NM_025509	ENSMUSG00000041084	Ostc	2310008M10Rik|5730557H03Rik	oligosaccharyltransferase complex subunit (non-catalytic)	protein-coding	0.050000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-732	chr13	109743841	109744041	+	0.41259	NA	intron (NM_011056, intron 4 of 16)	intron (NM_011056, intron 4 of 16)	-159868	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.015000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-790	chr14	61603130	61603330	+	0.41259	NA	non-coding (NR_028264, exon 7 of 7)	non-coding (NR_028264, exon 7 of 7)	3718	NM_023233	66597	Mm.491258	NM_023233	ENSMUSG00000035235	Trim13	3110001L12Rik|CAR|LEU5|RNF77|Rfp2	tripartite motif-containing 13	protein-coding	0.015000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-1985	chr5	118880074	118880274	+	0.41259	NA	Intergenic	Intergenic	-72165	NR_040694	74627	Mm.410828	NR_040694	ENSMUSG00000107144	4930413E15Rik	-	RIKEN cDNA 4930413E15 gene	ncRNA	0.005000	0.477612			
Oct4_nocontrol_ChIP_peaks_unique-352	chr3	82325949	82326149	+	0.41259	NA	Intergenic	B4A|SINE|B4	-32023	NM_001081230	213582	Mm.271269	NM_001081230	ENSMUSG00000033900	Map9	5033421J10Rik|5330427D05Rik|ASAP|Mtap9	microtubule-associated protein 9	protein-coding	0.010000	0.447761			
merged_common-262	chr14	61681165	61681365	+	0.41259	NA	intron (NR_028264, intron 1 of 6)	intron (NR_028264, intron 1 of 6)	1108	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.060000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1682	chr3	126638970	126639170	+	0.41259	NA	intron (NM_001025438, intron 2 of 18)	intron (NM_001025438, intron 2 of 18)	42119	NM_001346636	108058	Mm.255822	NM_023813	ENSMUSG00000053819	Camk2d	2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII	calcium/calmodulin-dependent protein kinase II, delta	protein-coding	0.025000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-1036	chr16	93832322	93832522	+	0.41259	NA	intron (NM_001045529, intron 1 of 16)	CpG	301	NM_001045529	338467	Mm.287329	NM_001045529	ENSMUSG00000039456	Morc3	1110051N18Rik|AI452146|BF318192|D16Jhu32e|NXP2|Zcwcc3	microrchidia 3	protein-coding	0.130000	0.781095			
ePOU_nocontrol_ChIP_peaks_unique-2034	chr6	14166960	14167160	+	0.41259	NA	Intergenic	MTC|LTR|ERVL-MaLR	295491	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.010000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-2280	chr7	112535658	112535858	+	0.41259	NA	promoter-TSS (NR_154466)	promoter-TSS (NR_154466)	-75	NR_154466	102636183	Mm.446701	NR_154466		Parvaos	A230071N21Rik	parvin, alpha, opposite strand	ncRNA	0.015000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-861	chr15	39112503	39112703	+	0.41259	NA	promoter-TSS (NM_198606)	promoter-TSS (NM_198606)	113	NM_172402	69906	Mm.17875	NM_172402	ENSMUSG00000022299	Slc25a32	2610043O12Rik|Mftc	solute carrier family 25, member 32	protein-coding	0.135000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-2596	chr9	108490696	108490896	+	0.41259	NA	TTS (NM_008483)	TTS (NM_008483)	120	NM_001168373	71472	Mm.289706	NM_027804	ENSMUSG00000006676	Usp19	8430421I07Rik|AI047774|Zmynd9	ubiquitin specific peptidase 19	protein-coding	0.145000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-1088	chr17	30064627	30064827	+	0.41259	NA	intron (NM_001356265, intron 2 of 5)	intron (NM_001356265, intron 2 of 5)	59688	NR_151442	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.000000	0.378109			
merged_common-138	chr11	29373610	29373810	+	0.41259	NA	promoter-TSS (NM_176841)	promoter-TSS (NM_176841)	52	NM_176841	108686	Mm.338284	NM_176841	ENSMUSG00000032740	Ccdc88a	A430106J12Rik|AI848406|Ape|C130096N06Rik|C330012F17Rik|D130005J21Rik|Girdin|Giv|Grdn|Hkrp1	coiled coil domain containing 88A	protein-coding	0.125000	0.766169			
ePOU_nocontrol_ChIP_peaks_unique-792	chr14	65833838	65834038	+	0.41259	NA	promoter-TSS (NM_028039)	promoter-TSS (NM_028039)	31	NM_028039	71988	Mm.249280	NM_028039	ENSMUSG00000022034	Esco2	2410004I17Rik|D030072L07Rik	establishment of sister chromatid cohesion N-acetyltransferase 2	protein-coding	0.095000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-2368	chr8	41870024	41870224	+	0.41259	NA	intron (NR_045497, intron 1 of 5)	intron (NR_045497, intron 1 of 5)	42857	NR_045497	69966	Mm.416903	NR_045497	ENSMUSG00000102046	2810404M03Rik	-	RIKEN cDNA 2810404M03 gene	ncRNA	0.015000	0.373134			41(ATTAGCATTGCAAATA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-269	chr18	82692301	82692501	+	0.41259	NA	intron (NM_177832, intron 1 of 29)	CpG	333	NM_177832	329002	Mm.34438	NM_177832	ENSMUSG00000041258	Zfp236	AI447957|Gm335	zinc finger protein 236	protein-coding	0.105000	0.721393			
merged_common-263	chr14	61758138	61758338	+	0.41259	NA	Intergenic	Intergenic	-75865	NR_028264	668253	Mm.32886	NR_028264	ENSMUSG00000097589	Dleu2	1810047A16Rik|4932411A06Rik|7730401J12Rik|AI197277|AI788824|Alt1|Gm9069|Leu2	deleted in lymphocytic leukemia, 2	ncRNA	0.010000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-2094	chr6	63441097	63441297	+	0.41259	NA	intron (NM_001370966, intron 1 of 15)	MTE2b|LTR|ERVL-MaLR	185191	NM_001370966									0.000000	0.333333			49(ATATGAATGAAAACAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-842	chr15	10053133	10053333	+	0.41259	NA	Intergenic	Intergenic	-124005	NM_011169	19116	Mm.10516	NM_011169	ENSMUSG00000005268	Prlr	AI987712|Pr-1|Pr-3|Prlr-rs1	prolactin receptor	protein-coding	0.000000	0.348259			
Oct4_nocontrol_ChIP_peaks_unique-85	chr11	69370408	69370608	+	0.41259	NA	Intergenic	Intergenic	-1082	NM_146019	216848	Mm.178246	NM_146019	ENSMUSG00000018474	Chd3	2600010P09Rik|AF020312|Chd7|Prp7|Prp9-1	chromodomain helicase DNA binding protein 3	protein-coding	0.005000	0.293532			21(TTTTAAATGAGAAATG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-87	chr11	74964765	74964965	+	0.41259	NA	intron (NM_001002764, intron 8 of 18)	B3A|SINE|B2	-38917	NM_001362742	27364	Mm.131443	NM_013761	ENSMUSG00000001323	Srr	M100034|Rgsc34|Srs	serine racemase	protein-coding	0.000000	0.407960		31(CATTCATATGCACA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1587	chr3	61583349	61583549	+	0.41259	NA	Intergenic	Intergenic	218942	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.010000	0.417910			
merged_common-101	chr10	64544126	64544326	+	0.41259	NA	intron (NM_177612, intron 11 of 17)	intron (NM_177612, intron 11 of 17)	-453971	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.000000	0.338308			
ePOU_nocontrol_ChIP_peaks_unique-860	chr15	38470715	38470915	+	0.41259	NA	Intergenic	CpG	19732	NR_105916	102465574		NR_105916	ENSMUSG00000099110	Mir6951	Gm27765|mmu-mir-6951	microRNA 6951	ncRNA	0.120000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-1975	chr5	110770750	110770950	+	0.41259	NA	promoter-TSS (NM_029337)	promoter-TSS (NM_029337)	-99	NR_152254	100504049	Mm.474515	NR_152254	ENSMUSG00000086401	Gm15559	-	predicted gene 15559	ncRNA	0.105000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-978	chr16	25059216	25059416	+	0.41259	NA	promoter-TSS (NR_040374)	promoter-TSS (NR_040374)	-323	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.060000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-2647	chrX	166945447	166945647	+	0.41259	NA	Intergenic	Intergenic	124823	NM_001101606	667794	Mm.302232	NM_001101606		Gm8817	EG667794	predicted gene 8817	protein-coding	0.005000	0.373134			
Oct4_nocontrol_ChIP_peaks_unique-265	chr18	62908933	62909133	+	0.41259	NA	Intergenic	Intergenic	-13294	NM_133237	494504	Mm.24042	NM_133237	ENSMUSG00000071847	Apcdd1	AB023957|AU041258|Drapc1|EIG180	adenomatosis polyposis coli down-regulated 1	protein-coding	0.000000	0.328358			
ePOU_nocontrol_ChIP_peaks_unique-601	chr12	98746206	98746406	+	0.41259	NA	promoter-TSS (NM_001364404)	promoter-TSS (NM_001364404)	-662	NM_001364401	75553	Mm.25549	NM_029334	ENSMUSG00000021012	Zc3h14	1010001P15Rik|1700016A15Rik|2700069A02Rik|AU014748	zinc finger CCCH type containing 14	protein-coding	0.010000	0.562189			
Oct4_nocontrol_ChIP_peaks_unique-460	chr6	147476181	147476381	+	0.41259	NA	promoter-TSS (NM_001355713)	promoter-TSS (NM_001355713)	-84	NM_001355713	67015	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	0.105000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1344	chr2	20399100	20399300	+	0.41259	NA	intron (NM_001081006, intron 2 of 21)	intron (NM_001081006, intron 2 of 21)	109287	NM_001081006	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.025000	0.378109			18(GTTTAGTGATTCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1172	chr18	24070511	24070711	+	0.41259	NA	Intergenic	RLTR13E|LTR|ERVK	-49798	NM_021559	59057	Mm.417427	NM_021559	ENSMUSG00000051469	Zfp24	3526401F17Rik|5033419P20Rik|AI480505|AI642085|AL024422|KOX17|ZF-12|Zfp191|Znf24	zinc finger protein 24	protein-coding	0.010000	0.457711			
Oct4_nocontrol_ChIP_peaks_unique-343	chr3	33873575	33873775	+	0.41259	NA	Intergenic	Intergenic	-29365	NM_026222	51938	Mm.275710	NM_026222	ENSMUSG00000027676	Ccdc39	4921507O14Rik|AI447426|AI844750|D3Ertd789e|b2b1304Clo|b2b1735Clo|b2b2025.1Clo|prh	coiled-coil domain containing 39	protein-coding	0.020000	0.467662			79(TTGTGCTCATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-13	chr1	34183667	34183867	+	0.41259	NA	3' UTR (NM_010081, exon 24 of 24)	3' UTR (NM_010081, exon 24 of 24)	23507	NM_010081	13518	Mm.336625	NM_010081	ENSMUSG00000026131	Dst	2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339	dystonin	protein-coding	0.015000	0.447761			-86(CGATTGTAATGCTAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-123	chr12	80365786	80365986	+	0.41259	NA	intron (NM_001364324, intron 6 of 8)	intron (NM_001364324, intron 6 of 8)	25791	NR_037207	100526530		NR_037207	ENSMUSG00000105972	Mir1843a	Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a	microRNA 1843a	ncRNA	0.015000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-1225	chr18	68831680	68831880	+	0.41259	NA	Intergenic	Intergenic	92380	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.010000	0.343284	1(GTTGAATAATTCATT,+,0.00),1(GTTGAATAATTCATT,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-495	chr8	12135979	12136179	+	0.41259	NA	Intergenic	Intergenic	-249692	NR_027975	434280	Mm.447484	NM_001013812	ENSMUSG00000047935	Sox1ot	EG434280|Gm5607	Sox1 overlapping transcript	ncRNA	0.010000	0.348259		59(AATGAAAATGCATT,+,0.00),59(AATGAAAATGCATT,-,0.00)	-32(TTTAGAATAACAAAAA,-,0.00)
merged_common-180	chr11	113683921	113684121	+	0.41259	NA	promoter-TSS (NM_001361593)	promoter-TSS (NM_001361593)	-99	NM_001362751	28081	Mm.351688	NM_138598	ENSMUSG00000041629	Fam104a	D11Wsu99e	family with sequence similarity 104, member A	protein-coding	0.140000	0.751244			
ePOU_nocontrol_ChIP_peaks_unique-791	chr14	64408479	64408679	+	0.41259	NA	intron (NM_001253712, intron 1 of 5)	intron (NM_001253712, intron 1 of 5)	8377	NM_001253716	110265	Mm.26713	NM_026322	ENSMUSG00000054733	Msra	2310045J23Rik|6530413P12Rik|MSR-A	methionine sulfoxide reductase A	protein-coding	0.015000	0.462687			
merged_common-100	chr10	49060361	49060561	+	0.41259	NA	Intergenic	ORR1E-int|LTR|ERVL-MaLR	727476	NM_001358866	14806	Mm.185993	NM_010349	ENSMUSG00000056073	Grik2	AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2	glutamate receptor, ionotropic, kainate 2 (beta 2)	protein-coding	0.005000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-396	chr11	58171581	58171781	+	0.41259	NA	promoter-TSS (NM_175001)	promoter-TSS (NM_175001)	27	NM_175001	216767	Mm.259907	NM_175001	ENSMUSG00000020514	Mrpl22	E030011D16Rik|HSPC158|L22mt|MRP-L22|MRP-L25|Rpml25	mitochondrial ribosomal protein L22	protein-coding	0.080000	0.557214			
ePOU_nocontrol_ChIP_peaks_unique-1965	chr5	103105319	103105519	+	0.41259	NA	intron (NM_001081567, intron 2 of 13)	intron (NM_001081567, intron 2 of 13)	-47027	NM_001310686	26414	Mm.39253	NM_009158	ENSMUSG00000046709	Mapk10	C230008H04Rik|JNK3|JNK3B1|JNK3B2|SAPK(beta)|Serk2|p493F12|p54bSAPK	mitogen-activated protein kinase 10	protein-coding	0.000000	0.373134			56(ATTAGCAAAAGAATGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-46	chr1	61310505	61310705	+	0.41259	NA	Intergenic	Intergenic	-67827	NR_040483	77341	Mm.402964	NR_040483	ENSMUSG00000085447	9530026F06Rik	-	RIKEN cDNA 9530026F06 gene	ncRNA	0.000000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-162	chr1	178318637	178318837	+	0.41259	NA	promoter-TSS (NM_025511)	promoter-TSS (NM_025511)	-416	NM_025511	66359	Mm.489720	NM_025511	ENSMUSG00000026500	Cox20	2310005N03Rik|Fam36a	cytochrome c oxidase assembly protein 20	protein-coding	0.125000	0.706468			
merged_common-851	chr9	124425013	124425213	+	0.41259	NA	TTS (NR_027950)	TTS (NR_027950)	1326	NR_015516	75135	Mm.476814	NR_015516		4930526I15Rik	1600027J15Rik	RIKEN cDNA 4930526I15 gene	ncRNA	0.015000	0.427861	10(TATGAATTATTAAAA,-,0.00)	-43(TTTGAATATTCATT,+,0.00),-43(TTTGAATATTCATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-988	chr16	32247037	32247237	+	0.41259	NA	promoter-TSS (NM_001185162)	promoter-TSS (NM_001185162)	-90	NM_001185162	68980	Mm.159860	NM_026898	ENSMUSG00000022787	Wdr53	1500002B03Rik|AI848860	WD repeat domain 53	protein-coding	0.130000	0.711443			
merged_common-503	chr2	142901415	142901615	+	0.41259	NA	promoter-TSS (NM_001081133)	promoter-TSS (NM_001081133)	-51	NM_001355123	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.115000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-1478	chr2	137473070	137473270	+	0.41259	NA	Intergenic	Intergenic	-356650	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.020000	0.323383			
ePOU_nocontrol_ChIP_peaks_unique-1806	chr4	100853395	100853595	+	0.41259	NA	intron (NM_198037, intron 1 of 26)	intron (NM_198037, intron 1 of 26)	76816	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	0.005000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-1019	chr16	70314037	70314237	+	0.41259	NA	5' UTR (NM_028803, exon 1 of 16)	5' UTR (NM_028803, exon 1 of 16)	188	NM_028803	74185	Mm.396102	NM_028803	ENSMUSG00000022707	Gbe1	2310045H19Rik|2810426P10Rik|D16Ertd536e	glucan (1,4-alpha-), branching enzyme 1	protein-coding	0.135000	0.751244			
ePOU_nocontrol_ChIP_peaks_unique-1824	chr4	116221265	116221465	+	0.41259	NA	promoter-TSS (NM_001355585)	promoter-TSS (NM_001355585)	-51	NM_001355585	18710	Mm.253819	NM_181585	ENSMUSG00000028698	Pik3r3	AA414954|p55|p55pik	phosphoinositide-3-kinase regulatory subunit 3	protein-coding	0.080000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-42	chr1	59237094	59237294	+	0.41259	NA	promoter-TSS (NM_001159948)	promoter-TSS (NM_001159948)	37	NM_028717	74018	Mm.272078	NM_028717	ENSMUSG00000026024	Als2	3222402C23Rik|9430073A21Rik|Als2cr6|Alsin|mKIAA1563	alsin Rho guanine nucleotide exchange factor	protein-coding	0.145000	0.766169			
ePOU_nocontrol_ChIP_peaks_unique-1124	chr17	68004139	68004339	+	0.41259	NA	promoter-TSS (NM_172964)	promoter-TSS (NM_172964)	-131	NM_172964	268970	Mm.9935	NM_172964	ENSMUSG00000024043	Arhgap28	AU044757|AW550892|E130310N06	Rho GTPase activating protein 28	protein-coding	0.075000	0.577114			-21(ATTAGCATAACTAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1731	chr4	27945392	27945592	+	0.41259	NA	Intergenic	Intergenic	-867639	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.005000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-2414	chr8	77272562	77272762	+	0.41259	NA	intron (NR_156496, intron 20 of 22)	RMER10B|LTR|ERVL	179427	NM_001363419	78514	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PS-GAP|PSGAP|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding	0.000000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-903	chr15	77928828	77929028	+	0.41259	NA	promoter-TSS (NM_019913)	promoter-TSS (NM_019913)	66	NM_019913	56551	Mm.291917	NM_019913	ENSMUSG00000005354	Txn2	2510006J11Rik|AI788873|Trx2	thioredoxin 2	protein-coding	0.080000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-1736	chr4	31727922	31728122	+	0.41259	NA	Intergenic	Intergenic	-236085	NM_172688	26409	Mm.258589	NM_009316	ENSMUSG00000028284	Map3k7	B430101B05|C87327|Tak1	mitogen-activated protein kinase kinase kinase 7	protein-coding	0.015000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-1347	chr2	22787617	22787817	+	0.41259	NA	intron (NM_019456, intron 1 of 13)	intron (NM_019456, intron 1 of 13)	13390	NM_019456	54519	Mm.14255	NM_019456	ENSMUSG00000026786	Apbb1ip	9930118P07Rik|Prp48	amyloid beta (A4) precursor protein-binding, family B, member 1 interacting protein	protein-coding	0.000000	0.333333			
merged_common-259	chr14	52257799	52257999	+	0.41259	NA	promoter-TSS (NM_201637)	promoter-TSS (NM_201637)	-139	NM_201637	67772	Mm.289934	NM_201637	ENSMUSG00000053754	Chd8	5830451P18Rik|AU015341|Duplin|HELSNF1|mKIAA1564	chromodomain helicase DNA binding protein 8	protein-coding	0.085000	0.706468			
merged_common-285	chr15	7281530	7281730	+	0.41259	NA	intron (NM_178748, intron 6 of 21)	intron (NM_178748, intron 6 of 21)	116760	NM_178748	268780	Mm.203208	NM_178748	ENSMUSG00000042961	Egflam	5930412K08|AU040377	EGF-like, fibronectin type III and laminin G domains	protein-coding	0.025000	0.407960			-79(ATTAGCAAATCAATAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2492	chr9	21131163	21131363	+	0.41259	NA	promoter-TSS (NM_001205312)	promoter-TSS (NM_001205312)	12	NM_001205312	54721	Mm.20249	NM_018793	ENSMUSG00000032175	Tyk2	JTK1	tyrosine kinase 2	protein-coding	0.080000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-741	chr13	117235473	117235673	+	0.41259	NA	intron (NM_010330, intron 2 of 8)	intron (NM_010330, intron 2 of 8)	15000	NM_010330	13723	Mm.274926	NM_010330	ENSMUSG00000021728	Emb	AL022799|Gp70	embigin	protein-coding	0.020000	0.532338			
ePOU_nocontrol_ChIP_peaks_unique-708	chr13	96660261	96660461	+	0.41259	NA	intron (NM_001360166, intron 6 of 19)	intron (NM_001360166, intron 6 of 19)	10575	NM_001360166	15357	Mm.316652	NM_008255	ENSMUSG00000021670	Hmgcr	HMG-CoAR|Red	3-hydroxy-3-methylglutaryl-Coenzyme A reductase	protein-coding	0.005000	0.447761			-12(ATTAGCAACACAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1333	chr2	12285621	12285821	+	0.41259	NA	intron (NM_001001309, intron 2 of 29)	intron (NM_001001309, intron 2 of 29)	-15525	NR_040353	338535	Mm.483275	NR_040353	ENSMUSG00000086843	E030013I19Rik	-	RIKEN cDNA E030013I19 gene	ncRNA	0.005000	0.283582			16(AATTTGTTCTGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2181	chr7	16286558	16286758	+	0.41259	NA	intron (NM_001136471, intron 1 of 13)	CpG	137	NM_001136471	243846	Mm.482401	NM_172297	ENSMUSG00000041375	Ccdc9	2600011L02Rik	coiled-coil domain containing 9	protein-coding	0.145000	0.781095			
ePOU_nocontrol_ChIP_peaks_unique-1893	chr5	20227981	20228181	+	0.41259	NA	intron (NM_015823, intron 4 of 21)	intron (NM_015823, intron 4 of 21)	320563	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.025000	0.427861			59(ATTTTAATAAAAATAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-968	chr16	22258017	22258217	+	0.41259	NA	intron (NM_001330554, intron 1 of 8)	intron (NM_001330554, intron 1 of 8)	7888	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0.000000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-2540	chr9	63602594	63602794	+	0.41259	NA	promoter-TSS (NM_001311098)	promoter-TSS (NM_001311098)	48	NM_025857	66939	Mm.34338	NM_025857	ENSMUSG00000037257	Aagab	2310007F21Rik|p34	alpha- and gamma-adaptin binding protein	protein-coding	0.130000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-2290	chr7	116347675	116347875	+	0.41259	NA	intron (NM_011083, intron 27 of 32)	B1_Mur2|SINE|Alu	-13585	NM_026533	68052	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.000000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-1178	chr18	32674270	32674470	+	0.41259	NA	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-114336	NM_001347610	71683	Mm.292145	NM_027863	ENSMUSG00000090523	Gypc	0610037F22Rik|Cd236r	glycophorin C	protein-coding	0.000000	0.328358			36(ACATTCTTTTGGATAT,+,0.00),59(ATTTGCATTTCAAATG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-300	chr2	38817513	38817713	+	0.41259	NA	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-33098	NM_001159549	14536	Mm.439703	NM_010264	ENSMUSG00000063972	Nr6a1	1700113M01Rik|Gcnf|NCNF|RTR	nuclear receptor subfamily 6, group A, member 1	protein-coding	0.010000	0.417910			61(GTTTGAATAAGAATGG,-,0.00)
merged_common-481	chr2	73892739	73892939	+	0.41259	NA	promoter-TSS (NM_009715)	promoter-TSS (NM_009715)	-200	NM_001284372	11909	Mm.209903	NM_009715	ENSMUSG00000027104	Atf2	Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP	activating transcription factor 2	protein-coding	0.080000	0.621891			
merged_common-217	chr12	100378291	100378491	+	0.41259	NA	intron (NM_001033213, intron 13 of 19)	intron (NM_001033213, intron 13 of 19)	101782	NR_045741	100038713	Mm.470751	NR_045741	ENSMUSG00000113679	Gm10432	-	predicted gene 10432	ncRNA	0.000000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-312	chr10	113980546	113980746	+	0.41259	NA	Intergenic	MER103C|DNA|hAT-Charlie	820724	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.005000	0.333333			20(CCTTTAGTATGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-294	chr10	97245334	97245534	+	0.41259	NA	Intergenic	Intergenic	-178044	NR_039547	100628616		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0.020000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-189	chr10	4242320	4242520	+	0.41259	NA	Intergenic	Intergenic	-23909	NM_031185	83397	Mm.27481	NM_031185	ENSMUSG00000038587	Akap12	AI317366|SSeCKS|Srcs5|Tsga12	A kinase (PRKA) anchor protein (gravin) 12	protein-coding	0.020000	0.452736			-86(ATTTGCATAGAAATGC,-,0.00),-15(CTTTTGTAATGTAAAC,+,0.00)
merged_common-486	chr2	91710590	91710790	+	0.41259	NA	promoter-TSS (NM_001355420)	promoter-TSS (NM_001355420)	-98	NM_001355421	51897	Mm.28492	NM_145528	ENSMUSG00000027244	Atg13	1110053A20Rik|D2Ertd391e|Harbi1	autophagy related 13	protein-coding	0.025000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-2325	chr7	140111919	140112119	+	0.41259	NA	intron (NM_053119, intron 3 of 7)	MER58B|DNA|hAT-Charlie	4402	NM_053119	93747	Mm.24452	NM_053119	ENSMUSG00000025465	Echs1	C80529|SCEH	enoyl Coenzyme A hydratase, short chain, 1, mitochondrial	protein-coding	0.000000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-354	chr11	22949046	22949246	+	0.41259	NA	intron (NM_001361661, intron 2 of 2)	intron (NM_001361661, intron 2 of 2)	-22859	NM_011663	22183	Mm.29542	NM_011663	ENSMUSG00000044068	Zrsr1	D11Ncvs75|Irlgs2|SP2|U2af1-rs1|U2afbp-rs	zinc finger (CCCH type), RNA binding motif and serine/arginine rich 1	protein-coding	0.000000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-1033	chr16	89995003	89995203	+	0.41259	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-20404	NM_001145886	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.010000	0.447761			-92(CTTTTGTTTTGTAGAA,+,0.00)
merged_common-351	chr17	12087432	12087632	+	0.41259	NA	Intergenic	(CATATA)n|Simple_repeat|Simple_repeat	-31752	NM_026644	68262	Mm.258300	NM_026644	ENSMUSG00000023827	Agpat4	1500003P24Rik	1-acylglycerol-3-phosphate O-acyltransferase 4 (lysophosphatidic acid acyltransferase, delta)	protein-coding	0.000000	0.318408		-61(TATGTATATGCATC,+,0.00),-61(TATGTATATGCATC,-,0.00),17(CATAGATATGCATA,+,0.00),23(TATGCATATGTAGT,+,0.00),23(TATGCATATGTAGT,-,0.00)	-56(ATATGCATCAGTATGC,-,0.00),-38(TCATAAGTATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-764	chr14	31963286	31963486	+	0.41259	NA	Intergenic	Intergenic	-65717	NM_030166	78754	Mm.40681	NM_030166	ENSMUSG00000021903	Galnt15	4631401E18Rik|Galntl2|mpp-GalNAc-T15	polypeptide N-acetylgalactosaminyltransferase 15	protein-coding	0.015000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-2256	chr7	90059619	90059819	+	0.41259	NA	Intergenic	Intergenic	30560	NR_110365	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0.005000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-2174	chr7	3213600	3213800	+	0.41259	NA	Intergenic	Intergenic	-4926	NR_029640	100049710		NR_029640	ENSMUSG00000077815	Mir290a	Mir290|Mirn290|mir-290a|mmu-miR-290|mmu-mir-290a	microRNA 290a	ncRNA	0.000000	0.437811			-9(ATTTACAGAAGAAAGC,-,0.00),5(GCATTCTTATTGTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1276	chr19	22823726	22823926	+	0.41259	NA	intron (NM_001362499, intron 9 of 25)	intron (NM_001362499, intron 9 of 25)	73221	NR_029591	387200		NR_029591	ENSMUSG00000065507	Mir204	Mirn204|mir-204|mmu-mir-204	microRNA 204	ncRNA	0.030000	0.467662			38(AATTACATGACAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-120	chr1	147180049	147180249	+	0.41259	NA	Intergenic	MurERV4_19-int|LTR|ERVK	682462	NM_001145807	215378	Mm.441817	NM_153539	ENSMUSG00000035131	Brinp3	B830045N13Rik|Fam5c	bone morphogenetic protein/retinoic acid inducible neural specific 3	protein-coding	0.010000	0.343284			
merged_common-606	chr4	117189908	117190108	+	0.41259	NA	Intergenic	U5|snRNA|snRNA	-7384	NM_134471	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.035000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-1440	chr2	112407239	112407439	+	0.41259	NA	intron (NM_024254, intron 4 of 9)	intron (NM_024254, intron 4 of 9)	28128	NM_024254	72425	Mm.425091	NM_024254	ENSMUSG00000027132	Katnbl1	2410042D21Rik|AA166487|AA473307|AI467442	katanin p80 subunit B like 1	protein-coding	0.005000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-1665	chr3	115671884	115672084	+	0.41259	NA	Intergenic	Intergenic	43071	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.000000	0.313433	10(CATGCATAATTCATA,+,0.00),10(CATGCATAATTCATA,-,0.00)		3(CCATTGTCATGCATAA,+,0.00)
merged_common-312	chr15	98871993	98872193	+	0.41259	NA	promoter-TSS (NM_001033276)	promoter-TSS (NM_001033276)	-888	NM_001033276	381022	Mm.264889	NM_001033276	ENSMUSG00000048154	Kmt2d	ALR|BC032281|BC058659|C430014K11Rik|KMT2B|Mll2|Mll4	lysine (K)-specific methyltransferase 2D	protein-coding	0.090000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-1358	chr2	30133593	30133793	+	0.41259	NA	promoter-TSS (NM_146252)	promoter-TSS (NM_146252)	-53	NM_146252	70296	Mm.19172	NM_146252	ENSMUSG00000039678	Tbc1d13	2600014A06Rik|BC025586	TBC1 domain family, member 13	protein-coding	0.090000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-307	chr10	110240771	110240971	+	0.41259	NA	Intergenic	Intergenic	-240481	NM_001368815	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.010000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-980	chr16	25517349	25517549	+	0.41259	NA	Intergenic	Intergenic	-166316	NM_001127260	22061	Mm.20894	NM_011641	ENSMUSG00000022510	Trp63	AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1	transformation related protein 63	protein-coding	0.000000	0.363184			
merged_common-835	chr9	72155321	72155521	+	0.41259	NA	Intergenic	Intergenic	-43602	NM_011544	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.030000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-2224	chr7	65594042	65594242	+	0.41259	NA	intron (NR_131060, intron 1 of 7)	intron (NR_131060, intron 1 of 7)	12111	NR_131060	407810	Mm.249337	NR_131060	ENSMUSG00000086662	BC046251	-	cDNA sequence BC046251	ncRNA	0.000000	0.348259	-35(CATGAATAATGCATA,+,0.00),-35(CATGAATAATGCATA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1179	chr18	32692562	32692762	+	0.41259	NA	intron (NR_045381, intron 4 of 4)	intron (NR_045381, intron 4 of 4)	-122721	NM_021367	53603	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0.000000	0.333333	37(TATGCATTATGAATA,+,0.00),37(TATGCATTATGAATA,-,0.00)	31(AATCCATATGCATT,+,0.00),31(AATCCATATGCATT,-,0.00)	-73(TATTTTTCATGTTAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2551	chr9	70884114	70884314	+	0.41259	NA	intron (NM_001324473, intron 1 of 8)	L1ME4b|LINE|L1	50594	NM_008280	15450	Mm.390187	NM_008280	ENSMUSG00000032207	Lipc	AI256194|HL|Hpl	lipase, hepatic	protein-coding	0.005000	0.313433	18(CATGAATGAATCATG,+,0.00)	-55(ATTCCATATGCATA,+,0.00),-49(TATGCATATATATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-958	chr16	16358760	16358960	+	0.41259	NA	promoter-TSS (NR_075074)	promoter-TSS (NR_075074)	171	NM_001360009	74006	Mm.218820	NM_152816	ENSMUSG00000022789	Dnm1l	6330417M19Rik|AI450666|Dlp1|Dnmlp1|Drp1|python	dynamin 1-like	protein-coding	0.055000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-1829	chr4	117581441	117581641	+	0.41259	NA	intron (NM_001356405, intron 3 of 8)	intron (NM_001356405, intron 3 of 8)	31176	NM_001285899	140546	Mm.235891	NM_080469	ENSMUSG00000033423	Eri3	PINT1|Prnpip1	exoribonuclease 3	protein-coding	0.005000	0.323383			-64(TTTTTCACATGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1173	chr18	24174416	24174616	+	0.41259	NA	Intergenic	Intergenic	-30828	NM_013814	14423	Mm.30249	NM_013814	ENSMUSG00000000420	Galnt1	-	polypeptide N-acetylgalactosaminyltransferase 1	protein-coding	0.000000	0.383085			7(CCATTCTCATTTAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-930	chr15	96156172	96156372	+	0.41259	NA	Intergenic	RLTR12A|LTR|ERVK	-26528	NR_028311	100043335	Mm.247464	NR_028311		Gm4371	EG667874|Gm8854	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0.020000	0.363184			17(GCATTGTAATGCTTAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1705	chr3	146450444	146450644	+	0.41259	NA	promoter-TSS (NM_028836)	promoter-TSS (NM_028836)	77	NM_001293672	74245	Mm.45396	NM_028836	ENSMUSG00000028189	Ctbs	2210401K11Rik|CTB	chitobiase	protein-coding	0.080000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-2303	chr7	123498188	123498388	+	0.41259	NA	intron (NM_001081329, intron 2 of 6)	intron (NM_001081329, intron 2 of 6)	2338	NM_001081329	210162	Mm.135397	NM_175435	ENSMUSG00000030757	Zkscan2	9430065N20Rik|AW493225|Zfp694	zinc finger with KRAB and SCAN domains 2	protein-coding	0.005000	0.348259			53(TTTAAAATAACAATAA,-,0.00)
merged_common-12	chr1	52725304	52725504	+	0.41259	NA	intron (NM_178081, intron 1 of 5)	(TA)n|Simple_repeat|Simple_repeat	1914	NM_133829	98682	Mm.491173	NM_133829	ENSMUSG00000041439	Mfsd6	2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2	major facilitator superfamily domain containing 6	protein-coding	0.000000	0.199005		79(TATGTATATGTATG,+,0.00),79(TATGTATATGTATG,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-53	chr10	32943073	32943273	+	0.41259	NA	Intergenic	ORR1C2|LTR|ERVL-MaLR	-53258	NM_001025286	432450	Mm.49665	NM_001013411	ENSMUSG00000069670	Nkain2	6330571D19Rik|AW455467|Tcba1	Na+/K+ transporting ATPase interacting 2	protein-coding	0.000000	0.383085			-67(TTACTGTTTTTTAAAT,+,0.00),-27(GTTTGAATAACAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1092	chr17	33031082	33031282	+	0.41259	NA	intron (NM_028543, intron 1 of 3)	intron (NM_028543, intron 1 of 3)	2199	NM_028543	73451	Mm.129453	NM_028543	ENSMUSG00000067430	Zfp763	1700065O13Rik|AI839635	zinc finger protein 763	protein-coding	0.010000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-1337	chr2	16629237	16629437	+	0.41259	NA	intron (NM_026162, intron 4 of 13)	L1MA7|LINE|L1	273033	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.323383			-56(GCATAGTGATTTTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1215	chr18	62169028	62169228	+	0.41259	NA	Intergenic	Intergenic	10853	NM_007420	11555	Mm.5598	NM_007420	ENSMUSG00000045730	Adrb2	Adrb-2|Badm|Gpcr7	adrenergic receptor, beta 2	protein-coding	0.015000	0.422886			
merged_common-193	chr12	31499677	31499877	+	0.41259	NA	promoter-TSS (NM_001253848)	promoter-TSS (NM_001253848)	-161	NM_001253848	104836	Mm.273270	NM_134048	ENSMUSG00000020659	Cbll1	AI467391|Hakai|c-Cbl-like	Casitas B-lineage lymphoma-like 1	protein-coding	0.075000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-1397	chr2	74130441	74130641	+	0.41259	NA	Intergenic	Intergenic	177176	NR_040501	73962	Mm.50289	NR_040501	ENSMUSG00000085405	4930441J16Rik	Astx1a|Astx1b|Astx1c	RIKEN cDNA 4930441J16 gene	ncRNA	0.025000	0.492537		-83(AATGCATATTCAAG,+,0.00),-83(AATGCATATTCAAG,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-474	chr7	73389042	73389242	+	0.41259	NA	intron (NM_177740, intron 1 of 3)	B3A|SINE|B2	-13368	NR_040325	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.005000	0.373134		1(TGTACATATGCATA,+,0.00),1(TGTACATATGCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1594	chr3	66295832	66296032	+	0.41259	NA	intron (NM_145820, intron 1 of 13)	intron (NM_145820, intron 1 of 13)	905	NM_145820	72789	Mm.443526	NM_028357	ENSMUSG00000027831	Veph1	2810471M23Rik|Veph	ventricular zone expressed PH domain-containing 1	protein-coding	0.005000	0.318408		-72(AATCCATATTCAAA,-,0.00)	-85(TGGTTGTTTTTTAAAT,+,0.00),16(ACTTTGTCATTTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1557	chr3	32529350	32529550	+	0.41259	NA	promoter-TSS (NM_024200)	promoter-TSS (NM_024200)	-32	NM_024200	67414	Mm.290414	NM_024200	ENSMUSG00000027668	Mfn1	2310002F04Rik|6330416C07Rik|D3Ertd265e|HR2|mKIAA4032	mitofusin 1	protein-coding	0.055000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-194	chr10	12383753	12383953	+	0.41259	NA	3' UTR (NM_011682, exon 74 of 74)	3' UTR (NM_011682, exon 74 of 74)	477882	NM_011682	22288	Mm.331784	NM_011682	ENSMUSG00000019820	Utrn	AA589569|DRP|Dmdl	utrophin	protein-coding	0.000000	0.328358			-44(TAATTCTTATGCAATT,+,0.00),-29(TTTTTCTCTTGGTTAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1278	chr19	23694301	23694501	+	0.41259	NA	exon (NM_028208, exon 2 of 7)	exon (NM_028208, exon 2 of 7)	7001	NM_028208	72351	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	0.015000	0.422886			
Oct4_nocontrol_ChIP_peaks_unique-148	chr13	51879059	51879259	+	0.41259	NA	Intergenic	Intergenic	32484	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.015000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-18	chr1	38319750	38319950	+	0.41259	NA	intron (NM_001290814, intron 8 of 21)	intron (NM_001290814, intron 8 of 21)	187767	NR_151587	329123	Mm.207123	NR_151587	ENSMUSG00000102716	Gm5099	EG329123	predicted gene 5099	ncRNA	0.005000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-57	chr1	69877999	69878199	+	0.41259	NA	intron (NM_001271533, intron 7 of 10)	intron (NM_001271533, intron 7 of 10)	51129	NM_001271533	66722	Mm.440554	NM_025728	ENSMUSG00000053153	Spag16	4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29	sperm associated antigen 16	protein-coding	0.005000	0.303483			
merged_common-702	chr6	83268330	83268530	+	0.41259	NA	intron (NM_001166067, intron 10 of 24)	intron (NM_001166067, intron 10 of 24)	31055	NM_001166067	232156	Mm.333189	NM_001166067	ENSMUSG00000068323	Slc4a5	C330006M16|C330016K18Rik	solute carrier family 4, sodium bicarbonate cotransporter, member 5	protein-coding	0.060000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-1851	chr4	133754386	133754586	+	0.41259	NA	promoter-TSS (NM_001080819)	promoter-TSS (NM_001080819)	-501	NM_001080819	93760	Mm.22478	NM_001080819	ENSMUSG00000007880	Arid1a	1110030E03Rik|BAF250a|Osa1|Smarcf1	AT rich interactive domain 1A (SWI-like)	protein-coding	0.130000	0.741294			
merged_common-206	chr12	68880981	68881181	+	0.41259	NA	Intergenic	Lx7|LINE|L1	278105	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0.005000	0.348259		1(CATCCATATTCACT,+,0.00)	-80(CCATTCTTATTCAAAC,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-929	chr15	95858545	95858745	+	0.41259	NA	intron (NM_001253813, intron 2 of 20)	intron (NM_001253813, intron 2 of 20)	-28573	NR_155276	102634389	Mm.440563	NR_155276	ENSMUSG00000078648	LOC102634389	-	uncharacterized LOC102634389	ncRNA	0.015000	0.348259			39(ATTTAAAAAATAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1040	chr17	3199487	3199687	+	0.41259	NA	TTS (NM_134123)	TTS (NM_134123)	84615	NM_134123	106583	Mm.124373	NM_134123	ENSMUSG00000046201	Scaf8	A630086M08Rik|A930036P18Rik|AA408306|AI447644|AI448652|AU015035|Rbm16|mKIAA1116	SR-related CTD-associated factor 8	protein-coding	0.000000	0.373134		29(TCTGCATATACATG,-,0.00)	34(ATATACATGATAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1416	chr2	91202773	91202973	+	0.41259	NA	promoter-TSS (NM_001357067)	promoter-TSS (NM_001357067)	-39	NM_007387	11432	Mm.45570	NM_007387	ENSMUSG00000002103	Acp2	Acp-2|LAP	acid phosphatase 2, lysosomal	protein-coding	0.065000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-1004	chr16	43889741	43889941	+	0.41259	NA	promoter-TSS (NM_027801)	promoter-TSS (NM_027801)	-61	NM_027801	212153	Mm.209835	NM_027801	ENSMUSG00000022701	Ccdc191	2610015P09Rik|8430422M09Rik|AU040712	coiled-coil domain containing 191	protein-coding	0.050000	0.577114			
ePOU_nocontrol_ChIP_peaks_unique-675	chr13	58401910	58402110	+	0.41259	NA	promoter-TSS (NM_001168248)	promoter-TSS (NM_001168248)	107	NM_001360494	15387	Mm.142872	NM_025279	ENSMUSG00000021546	Hnrnpk	Hnrpk|KBBP|NOVA	heterogeneous nuclear ribonucleoprotein K	protein-coding	0.180000	0.796020			
ePOU_nocontrol_ChIP_peaks_unique-1454	chr2	119033126	119033326	+	0.41259	NA	Intergenic	Intergenic	-1564	NM_173450	271842	Mm.33617	NM_173450	ENSMUSG00000027324	Rpusd2	4921503C21Rik|9630001E10|BB231107	RNA pseudouridylate synthase domain containing 2	protein-coding	0.005000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-419	chr11	67415348	67415548	+	0.41259	NA	Intergenic	L1MB4|LINE|L1	88345	NM_001081250	544791	Mm.461064	NM_001081250	ENSMUSG00000060180	Myh13	MyHC-eo	myosin, heavy polypeptide 13, skeletal muscle	protein-coding	0.000000	0.363184			-31(TTTTTATTATGGAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2183	chr7	19359615	19359815	+	0.41259	NA	promoter-TSS (NM_145822)	promoter-TSS (NM_145822)	-232	NM_145822	70333	Mm.171370	NM_145822	ENSMUSG00000047649	Cd3eap	1190028F09|2610103M17Rik|ASE-1|Ase1|CAST|PAF49	CD3E antigen, epsilon polypeptide associated protein	protein-coding	0.040000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-1540	chr3	14948190	14948390	+	0.41259	NA	Intergenic	Intergenic	-22911	NR_040550	77127	Mm.195792	NR_040549	ENSMUSG00000098008	A930001A20Rik	-	RIKEN cDNA A930001A20 gene	ncRNA	0.005000	0.393035		-43(CATGAATATGTAAT,+,0.00)	27(ATTTTCTTATTGAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1473	chr2	135010399	135010599	+	0.41259	NA	intron (NM_001145830, intron 3 of 31)	intron (NM_001145830, intron 3 of 31)	205117	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA	0.020000	0.373134	18(TGTGCATTATTCATG,+,0.00),18(TGTGCATTATTCATG,-,0.00)		-76(AGTTTGTCTTATAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1720	chr4	12655091	12655291	+	0.41259	NA	Intergenic	Intergenic	-251646	NM_001171801	208820	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0.020000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-230	chr10	39731670	39731870	+	0.41259	NA	promoter-TSS (NM_011264)	promoter-TSS (NM_011264)	237	NR_038037	327744	Mm.295265	NM_183198	ENSMUSG00000087177	E130307A14Rik	-	RIKEN cDNA E130307A14 gene	ncRNA	0.090000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-2165	chr6	143099991	143100191	+	0.41259	NA	promoter-TSS (NM_029897)	promoter-TSS (NM_029897)	61	NM_029897	74741	Mm.130260	NM_029081	ENSMUSG00000030279	C2cd5	5730419I09Rik|C030008B15Rik|CDP138	C2 calcium-dependent domain containing 5	protein-coding	0.095000	0.671642			
merged_common-448	chr2	8356545	8356745	+	0.41259	NA	Intergenic	Intergenic	-832870	NR_038180	73438	Mm.23558	NR_038180	ENSMUSG00000085580	1700061F12Rik	-	RIKEN cDNA 1700061F12 gene	ncRNA	0.005000	0.358209			-61(ATCTAAATAGCAAAGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-249	chr10	62792315	62792515	+	0.41259	NA	promoter-TSS (NM_026201)	promoter-TSS (NM_026201)	-47	NM_026201	67500	Mm.196371	NM_026201	ENSMUSG00000020074	Ccar1	2610511G16Rik|9430036H15Rik|Carp1	cell division cycle and apoptosis regulator 1	protein-coding	0.120000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-690	chr13	76197480	76197680	+	0.41259	NA	Intergenic	Intergenic	74364	NM_001370926	238726	Mm.71912	NM_001370926	ENSMUSG00000109228	Fam81b	Gm276	family with sequence similarity 81, member B	protein-coding	0.005000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-2387	chr8	51837900	51838100	+	0.41259	NA	Intergenic	Intergenic	-518611	NR_151738	330767	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0.000000	0.263682			-52(ATTTAAATTAAAATGT,-,0.00),56(ATATACATAATAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-892	chr15	73107696	73107896	+	0.41259	NA	intron (NM_153178, intron 17 of 18)	intron (NM_153178, intron 17 of 18)	17384	NM_053068	93696	Mm.23095	NM_053068	ENSMUSG00000068391	Chrac1	2410152E03Rik|2810406L04Rik|YCL1	chromatin accessibility complex 1	protein-coding	0.005000	0.353234		-45(CATAAATATGCATT,+,0.00),-45(CATAAATATGCATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1889	chr5	9415230	9415430	+	0.41259	NA	intron (NM_001359884, intron 4 of 20)	intron (NM_001359884, intron 4 of 20)	39626	NR_030537	100124492		NR_030537	ENSMUSG00000077896	Mir879	Mirn879|mir-879|mmu-mir-879	microRNA 879	ncRNA	0.010000	0.383085			-43(ATTTACAAAAGAGAAA,-,0.00)
merged_common-336	chr16	75891392	75891592	+	0.41259	NA	intron (NM_023380, intron 1 of 7)	L1MC5a|LINE|L1	17774	NM_023380	67742	Mm.131406	NM_023380	ENSMUSG00000022876	Samsn1	4930571B16Rik|930571B16Rik|Hacs1|SLy2	SAM domain, SH3 domain and nuclear localization signals, 1	protein-coding	0.000000	0.338308			
merged_common-698	chr6	71633269	71633469	+	0.41259	NA	promoter-TSS (NM_173001)	promoter-TSS (NM_173001)	-452	NM_001362200	104263	Mm.260479	NM_173001	ENSMUSG00000053470	Kdm3a	1700105C21Rik|C230043E16Rik|JHDM2a|Jmjd1|Jmjd1a|KDM2A|TGSA|Tsga	lysine (K)-specific demethylase 3A	protein-coding	0.075000	0.606965			
merged_common-432	chr19	33538886	33539086	+	0.41259	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-21216	NM_001323386	628236		NM_001323386	ENSMUSG00000079344	Lipo4	Gm6857	lipase, member O4	protein-coding	0.005000	0.318408		-15(CATACATATTCATA,+,0.00),-15(CATACATATTCATA,-,0.00),49(CATACATATGCACA,+,0.00)	71(TACTTCCCATGCATAT,+,0.00)
merged_common-763	chr7	131371155	131371355	+	0.41259	NA	exon (NM_001364161, exon 1 of 6)	exon (NM_001364161, exon 1 of 6)	109	NM_001039534	214580	Mm.272948	NM_177609	ENSMUSG00000063179	Pstk	5430423O14Rik|5730458D16Rik|Gm1099|R75284	phosphoseryl-tRNA kinase	protein-coding	0.110000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-1213	chr18	61398911	61399111	+	0.41259	NA	intron (NM_001364996, intron 1 of 12)	CpG	-1111	NR_029879	723889		NR_029879	ENSMUSG00000105200	Mir378a	Mir378|Mirn378|mmu-mir-378|mmu-mir-378a	microRNA 378a	ncRNA	0.070000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-2184	chr7	19604473	19604673	+	0.41259	NA	promoter-TSS (NR_125836)	promoter-TSS (NR_125836)	-87	NR_125832	53609	Mm.20913	NM_016680	ENSMUSG00000061028	Clasrp	Clasp|Sfrs16|Srsf16|Swap2	CLK4-associating serine/arginine rich protein	protein-coding	0.055000	0.557214			
ePOU_nocontrol_ChIP_peaks_unique-2343	chr8	10817067	10817267	+	0.41259	NA	Intergenic	Intergenic	65287	NR_040705	320014	Mm.403203	NR_040705	ENSMUSG00000109473	B930025P03Rik	-	RIKEN cDNA B930025P03 gene	ncRNA	0.010000	0.328358			-45(ATTAGCATTGCAAAAA,-,0.00),-13(TATTTATTAAGCAAAT,+,0.00)
merged_common-638	chr5	44726958	44727158	+	0.41259	NA	intron (NM_001077398, intron 1 of 8)	intron (NM_001077398, intron 1 of 8)	72688	NM_001359071	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.010000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-2442	chr8	94327873	94328073	+	0.41259	NA	Intergenic	Intergenic	-1235	NM_019415	20497	Mm.25804	NM_019415	ENSMUSG00000031766	Slc12a3	AI035291|NCC|NCCT|TSC	solute carrier family 12, member 3	protein-coding	0.010000	0.283582		-14(CATGCATATATATA,+,0.00),-14(CATGCATATATATA,-,0.00),33(TATACATATACATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-208	chr10	23401171	23401371	+	0.41259	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-51328	NM_010167	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.015000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-1593	chr3	65767137	65767337	+	0.41259	NA	intron (NM_001166659, intron 6 of 12)	intron (NM_001166659, intron 6 of 12)	101009	NM_001166659	624866	Mm.296317	NM_001037923	ENSMUSG00000074579	Lekr1	EG546798|EG624866|Gm6534	leucine, glutamate and lysine rich 1	protein-coding	0.000000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-2288	chr7	116045046	116045246	+	0.41259	NA	Intergenic	Intergenic	-6402	NM_001025559	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.010000	0.398010			0(ATTTGCATACCAGAAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2395	chr8	67735426	67735626	+	0.41259	NA	intron (NM_177698, intron 11 of 14)	intron (NM_177698, intron 11 of 14)	82769	NM_027626	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.000000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-1356	chr2	29691587	29691787	+	0.41259	NA	intron (NM_001039087, intron 5 of 25)	intron (NM_001039087, intron 5 of 25)	59970	NM_001370923	433415	Mm.359309	NM_001370923	ENSMUSG00000079497	Gm13420	Dspd2	predicted gene 13420	protein-coding	0.010000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-7	chr1	16130064	16130264	+	0.41259	NA	intron (NM_133832, intron 4 of 5)	intron (NM_133832, intron 4 of 5)	24282	NM_133832	98711	Mm.274376	NM_133832	ENSMUSG00000025921	Rdh10	3110069K09Rik|4921506A21Rik|AI875664|AW549993|D1Ertd762e|m366Asp	retinol dehydrogenase 10 (all-trans)	protein-coding	0.005000	0.457711			-20(ATTTGCAAGACAAAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-24	chr1	49890092	49890292	+	0.41259	NA	Intergenic	Intergenic	645576	NR_151585	442837	Mm.337149	NM_001002792	ENSMUSG00000051616	C230029F24Rik	-	RIKEN cDNA C230029F24 gene	ncRNA	0.000000	0.303483			
Oct4_nocontrol_ChIP_peaks_unique-496	chr8	22061331	22061531	+	0.41259	NA	intron (NM_183142, intron 1 of 3)	intron (NM_183142, intron 1 of 3)	710	NM_001243161	207958	Mm.267439	NM_183142	ENSMUSG00000063362	Alg11	AI849156|AW492253|B230397C21|Mmat-4(5)	asparagine-linked glycosylation 11 (alpha-1,2-mannosyltransferase)	protein-coding	0.005000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-1125	chr17	68166756	68166956	+	0.41259	NA	Intergenic	Intergenic	-106941	NM_177278	320858	Mm.137356	NM_177278	ENSMUSG00000041565	L3mbtl4	A730037L19Rik|D930040M24Rik	L3MBTL4 histone methyl-lysine binding protein	protein-coding	0.010000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-1990	chr5	123014932	123015132	+	0.41259	NA	promoter-TSS (NM_175423)	promoter-TSS (NM_175423)	-42	NM_175423	109305	Mm.218582	NM_175423	ENSMUSG00000049686	Orai1	D730049H07Rik|Tmem142a|orai-1	ORAI calcium release-activated calcium modulator 1	protein-coding	0.135000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-1681	chr3	124587570	124587770	+	0.41259	NA	Intergenic	Intergenic	-6579	NR_160692	384775	Mm.489851	NM_001368235	ENSMUSG00000039174	1700003H04Rik	4930538K10Rik|4933400D22Rik	RIKEN cDNA 1700003H04 gene	protein-coding	0.010000	0.373134		6(TTTGCATATTCATT,+,0.00),6(TTTGCATATTCATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2564	chr9	84755044	84755244	+	0.41259	NA	Intergenic	Intergenic	-19254	NR_040739	75253	Mm.401984	NR_040739	ENSMUSG00000099724	4930554C24Rik	-	RIKEN cDNA 4930554C24 gene	ncRNA	0.000000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-2271	chr7	101108360	101108560	+	0.41259	NA	promoter-TSS (NM_199012)	promoter-TSS (NM_199012)	-315	NM_199012	207278	Mm.263041	NM_199012	ENSMUSG00000030691	Fchsd2	BC034086|NWK1|R74866|Sh3md3|mKIAA0769	FCH and double SH3 domains 2	protein-coding	0.110000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-2510	chr9	42566070	42566270	+	0.41259	NA	intron (NM_175481, intron 14 of 20)	intron (NM_175481, intron 14 of 20)	-93912	NM_173038	272589	Mm.34483	NM_173038	ENSMUSG00000037287	Tbcel	D330014K23|E130107N23Rik|Lrrc35	tubulin folding cofactor E-like	protein-coding	0.020000	0.398010			73(GTGTTTGCATGCAAAT,+,0.00),75(GTTTGCATGCAAATAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1429	chr2	103970057	103970257	+	0.41259	NA	promoter-TSS (NM_008505)	promoter-TSS (NM_008505)	-130	NM_001142335	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.075000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-2230	chr7	67468984	67469184	+	0.41259	NA	Intergenic	Intergenic	-96226	NM_001357325	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.000000	0.412935			42(GAATTTGCATGTAAAT,+,0.00),44(ATTTGCATGTAAATAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2584	chr9	103155720	103155920	+	0.41259	NA	intron (NM_173781, intron 2 of 7)	RLTR13B1|LTR|ERVK	43746	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.010000	0.412935	-4(CATGAATAATGCAAT,+,0.00),-4(CATGAATAATGCAAT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1503	chr2	153348367	153348567	+	0.41259	NA	intron (NM_001039939, intron 1 of 11)	intron (NM_001039939, intron 1 of 11)	2637	NM_001039939	228790	Mm.330677	NM_001039939	ENSMUSG00000042548	Asxl1	-	additional sex combs like 1	protein-coding	0.010000	0.412935			1(ATTAAAAAGAAAAAGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-799	chr14	71320289	71320489	+	0.41259	NA	Intergenic	Intergenic	69116	NR_046076	100043132	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	0.000000	0.383085			43(TGATTCTTATTTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1543	chr3	19628779	19628979	+	0.41259	NA	Intergenic	Intergenic	-15581	NM_001081281	381485	Mm.35419	NM_001081281	ENSMUSG00000060913	Trim55	D830041C10Rik|Murf2|Rnf29	tripartite motif-containing 55	protein-coding	0.045000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-1265	chr19	10198829	10199029	+	0.41259	NA	TTS (NM_001271615)	TTS (NM_001271615)	4992	NM_001271615	14156	Mm.2952	NM_007999	ENSMUSG00000024742	Fen1	AW538437|FEN-1	flap structure specific endonuclease 1	protein-coding	0.010000	0.472637			
Oct4_nocontrol_ChIP_peaks_unique-349	chr3	59542764	59542964	+	0.41259	NA	Intergenic	L1_Mur3|LINE|L1	-186922	NM_001101531	433597	Mm.297801	NM_001101531	ENSMUSG00000090527	Gm5538	-	predicted gene 5538	protein-coding	0.010000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-133	chr1	157274399	157274599	+	0.41259	NA	intron (NM_177644, intron 3 of 17)	intron (NM_177644, intron 3 of 17)	-137853	NR_027984	69953	Mm.286863	NM_027274	ENSMUSG00000049881	2810025M15Rik	AI429618	RIKEN cDNA 2810025M15 gene	ncRNA	0.000000	0.383085			-25(ATTTAAATATCAAAAA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-18	chr1	87226553	87226753	+	0.41259	NA	intron (NM_023314, intron 6 of 6)	intron (NM_023314, intron 6 of 6)	12714	NM_001039169	26987	Mm.227183	NM_023314	ENSMUSG00000026254	Eif4e2	2700069E09Rik|AI036339|AV129531|D0H0S6743E|Eif4el3	eukaryotic translation initiation factor 4E member 2	protein-coding	0.000000	0.402985			-95(TTTTAAAAGACAATTA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1753	chr4	47141365	47141565	+	0.41259	NA	Intergenic	Intergenic	49542	NR_156438	230145	Mm.132246	NM_172693	ENSMUSG00000039774	Galnt12	9130206E10|A630062B03Rik|galNAc-T12|mpp-GalNAc-T12|pp-GaNTase	polypeptide N-acetylgalactosaminyltransferase 12	protein-coding	0.025000	0.457711			
merged_common-516	chr2	180119131	180119331	+	0.41259	NA	promoter-TSS (NM_144500)	promoter-TSS (NM_144500)	-75	NM_144500	228983	Mm.253578	NM_144500	ENSMUSG00000039050	Osbpl2	C130070J12Rik|ORP-2|Orp2	oxysterol binding protein-like 2	protein-coding	0.115000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-303	chr10	106162480	106162680	+	0.41259	NA	Intergenic	Intergenic	-307730	NM_001359672	327814	Mm.391424	NM_177373	ENSMUSG00000053825	Ppfia2	5330438O12|B230207K17Rik|E130120L08Rik|mKIAA4112	protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 2	protein-coding	0.000000	0.298507			71(ATGTCCATAAAAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1413	chr2	84519125	84519325	+	0.41259	NA	Intergenic	Intergenic	-12352	NR_046046	672763	Mm.491046	NR_046046	ENSMUSG00000087362	Gm13710	-	predicted gene 13710	ncRNA	0.015000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-1488	chr2	146300008	146300208	+	0.41259	NA	intron (NM_001033348, intron 38 of 40)	intron (NM_001033348, intron 38 of 40)	40822	NR_040619	77806	Mm.392819	NR_040619	ENSMUSG00000085958	A930019D19Rik	-	RIKEN cDNA A930019D19 gene	ncRNA	0.015000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-2591	chr9	106789062	106789262	+	0.41259	NA	promoter-TSS (NM_030730)	promoter-TSS (NM_030730)	51	NM_030730	81000	Mm.246689	NM_030730	ENSMUSG00000040661	Rad54l2	Arip4|D130058C05|G630026H09Rik|Srisnf2l	RAD54 like 2 (S. cerevisiae)	protein-coding	0.125000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-47	chr1	61695868	61696068	+	0.41259	NA	intron (NM_001081050, intron 1 of 22)	intron (NM_001081050, intron 1 of 22)	57144	NM_001081050	72823	Mm.35153	NM_001081050	ENSMUSG00000052062	Pard3b	1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta	par-3 family cell polarity regulator beta	protein-coding	0.000000	0.288557			-45(GTCCTGTCATGCAAAT,+,0.00)
merged_common-517	chr2	180171390	180171590	+	0.41259	NA	promoter-TSS (NM_019822)	promoter-TSS (NM_019822)	-98	NM_019822	56436	Mm.316654	NM_019822	ENSMUSG00000039041	Adrm1	1110063P18Rik|2510006J17Rik|AA408205|ARM-1|AU043535|Arm1|Gp110|Rpn13	adhesion regulating molecule 1	protein-coding	0.150000	0.751244			
merged_common-279	chr14	115040837	115041037	+	0.41259	NA	Intergenic	CpG	-2734	NR_029785	723905		NR_029785	ENSMUSG00000065508	Mir17	Mirn17|mir-17|mmu-mir-17	microRNA 17	ncRNA	0.130000	0.676617			-36(TGTTTTTTATGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2460	chr8	116943200	116943400	+	0.41259	NA	promoter-TSS (NM_177700)	promoter-TSS (NM_177700)	-93	NM_177700	234776	Mm.259736	NM_177700	ENSMUSG00000047388	Atmin	Asciz|gpg6|mKIAA0431	ATM interactor	protein-coding	0.100000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-232	chr10	41655667	41655867	+	0.41259	NA	intron (NM_001358562, intron 12 of 47)	intron (NM_001358562, intron 12 of 47)	60696	NM_001358562	75973	Mm.228517	NM_029493	ENSMUSG00000075225	Ccdc162	5033413D22Rik|Ccdc162p|Gm29096|Gm61|Gm6976	coiled-coil domain containing 162	protein-coding	0.000000	0.437811			-58(ATTTGCATAAATATAG,-,0.00)
merged_common-846	chr9	108854045	108854245	+	0.41259	NA	5' UTR (NM_134420, exon 1 of 18)	5' UTR (NM_134420, exon 1 of 18)	102	NM_134420	171429	Mm.45201	NM_134420	ENSMUSG00000023259	Slc26a6	B930010B04Rik|CFEX|Pat-1|Pat1	solute carrier family 26, member 6	protein-coding	0.075000	0.626866			
merged_common-782	chr8	45559704	45559904	+	0.41259	NA	intron (NM_172752, intron 1 of 22)	L1MB3|LINE|L1	52016	NM_172752	234214	Mm.211096	NM_172752	ENSMUSG00000031626	Sorbs2	2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2	sorbin and SH3 domain containing 2	protein-coding	0.010000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-2577	chr9	96364338	96364538	+	0.41259	NA	promoter-TSS (NM_001357213)	promoter-TSS (NM_001357213)	-7	NM_001357212	11933	Mm.424	NM_007502	ENSMUSG00000032412	Atp1b3	AA409958|AI664000|AW212096	ATPase, Na+/K+ transporting, beta 3 polypeptide	protein-coding	0.135000	0.781095			
ePOU_nocontrol_ChIP_peaks_unique-785	chr14	58567561	58567761	+	0.41259	NA	Intergenic	Intergenic	494975	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.000000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-2342	chr8	9977740	9977940	+	0.41259	NA	5' UTR (NM_001081119, exon 1 of 2)	5' UTR (NM_001081119, exon 1 of 2)	123	NM_026868	68904	Mm.142570	NM_026868	ENSMUSG00000040396	Abhd13	1110065L07Rik|AI463703|AI788994	abhydrolase domain containing 13	protein-coding	0.120000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-2008	chr5	138280170	138280370	+	0.41259	NA	promoter-TSS (NM_172412)	promoter-TSS (NM_172412)	-239	NM_016964	50878	Mm.285609	NM_016964	ENSMUSG00000036928	Stag3	SA-2	stromal antigen 3	protein-coding	0.055000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-1814	chr4	105323447	105323647	+	0.41259	NA	Intergenic	Intergenic	166200	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|PRG-2|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.005000	0.432836			
Oct4_nocontrol_ChIP_peaks_unique-108	chr12	10625618	10625818	+	0.41259	NA	Intergenic	Lx7|LINE|L1	179330	NR_110487	328061	Mm.56067	NR_110487	ENSMUSG00000112792	Gm38407	4931412M21	predicted gene, 38407	ncRNA	0.005000	0.323383	-16(TATGCATAATGGATT,+,0.00),-16(TATGCATAATGGATT,-,0.00)	70(AATGAATATGCATT,+,0.00),70(AATGAATATGCATT,-,0.00)	75(ATATGCATTAAAAAGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2634	chrX	75850553	75850753	+	0.41259	NA	intron (NM_001346519, intron 1 of 16)	intron (NM_001346519, intron 1 of 16)	-7590	NM_001346520	102866	Mm.28777	NM_145629	ENSMUSG00000016382	Pls3	AI115446|AL024105	plastin 3 (T-isoform)	protein-coding	0.015000	0.363184			-39(ATATACATATGAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2162	chr6	136541283	136541483	+	0.41259	NA	intron (NM_019426, intron 1 of 14)	ORR1C2-int|LTR|ERVL-MaLR	22532	NM_019426	54343	Mm.173271	NM_019426	ENSMUSG00000030213	Atf7ip	2610204M12Rik|AM|Mcaf1	activating transcription factor 7 interacting protein	protein-coding	0.000000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-207	chr10	23003716	23003916	+	0.41259	NA	Intergenic	Intergenic	-183673	NM_011545	21412	Mm.16497	NM_011545	ENSMUSG00000045680	Tcf21	Pod-1|Pod1|bHLHa23|capsulin|epc|epicardin	transcription factor 21	protein-coding	0.000000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-182	chr1	188784132	188784332	+	0.41259	NA	intron (NM_021408, intron 47 of 70)	intron (NM_021408, intron 47 of 70)	223608	NM_001359576	226823	Mm.209880	NM_172650	ENSMUSG00000026608	Kctd3	4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45	potassium channel tetramerisation domain containing 3	protein-coding	0.005000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-1709	chr3	154194619	154194819	+	0.41259	NA	intron (NM_001081263, intron 2 of 21)	intron (NM_001081263, intron 2 of 21)	135841	NM_010713	16875	Mm.15530	NM_010713	ENSMUSG00000096225	Lhx8	L3|Lhx7	LIM homeobox protein 8	protein-coding	0.005000	0.323383			
ePOU_nocontrol_ChIP_peaks_unique-1964	chr5	102084602	102084802	+	0.41259	NA	Intergenic	Intergenic	-14781	NM_172882	72145	Mm.332522	NM_172882	ENSMUSG00000043940	Wdfy3	2610509D04Rik|ALFY|AW319683|B930017C24|BWF1|Bchs|D5Ertd66e|Ggtb3|ZFYVE25|mKIAA0993	WD repeat and FYVE domain containing 3	protein-coding	0.010000	0.278607		-42(TATGCATATATATA,-,0.00)	
merged_common-179	chr11	112811169	112811369	+	0.38762	NA	Intergenic	Intergenic	-12261	NR_126070	100038732	Mm.65345	NR_126070	ENSMUSG00000075437	Gm11681	-	predicted gene 11681	ncRNA	0.025000	0.522388		-31(CATCCCTATGCATA,+,0.00)	-4(TCATTGTCATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-350	chr11	19074279	19074479	+	0.37958	NA	intron (NR_046037, intron 4 of 4)	intron (NR_046037, intron 4 of 4)	9104	NR_046037	74059	Mm.292321	NR_046037	ENSMUSG00000086025	4933406G16Rik	-	RIKEN cDNA 4933406G16 gene	ncRNA	0.020000	0.512438			-31(GCTTTATTATGTAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-196	chr10	14705407	14705607	+	0.37958	NA	promoter-TSS (NM_025418)	promoter-TSS (NM_025418)	-18	NM_025418	66201	Mm.227983	NM_025418	ENSMUSG00000019868	Vta1	1110001D18Rik|1110059P08Rik|AU040813|C85340|LIP5|SBP1	vesicle (multivesicular body) trafficking 1	protein-coding	0.105000	0.631841			
merged_common-94	chr10	37519417	37519617	+	0.37958	NA	Intergenic	Intergenic	-380591	NM_008538	17118	Mm.30059	NM_008538	ENSMUSG00000069662	Marcks	Macs|PKCSL	myristoylated alanine rich protein kinase C substrate	protein-coding	0.000000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-2109	chr6	82860997	82861197	+	0.37958	NA	Intergenic	Intergenic	20756	NR_040520	69652	Mm.96357	NR_040520	ENSMUSG00000100291	2310069B03Rik	-	RIKEN cDNA 2310069B03 gene	ncRNA	0.005000	0.422886			
merged_common-475	chr2	65917160	65917360	+	0.37958	NA	intron (NM_178634, intron 2 of 5)	intron (NM_178634, intron 2 of 5)	-14605	NM_001290665	77771	Mm.102025	NM_153409	ENSMUSG00000044647	Csrnp3	A330102K23Rik|CSRNP-3|Csnrp3|Mbu1|taip-2	cysteine-serine-rich nuclear protein 3	protein-coding	0.000000	0.313433		-63(CATGAATATGTATA,+,0.00),-63(CATGAATATGTATA,-,0.00)	
merged_common-277	chr14	100117896	100118096	+	0.37958	NA	intron (NM_010636, intron 1 of 6)	B3|SINE|B2	31800	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.010000	0.472637	-88(TATGCATTATACGTG,-,0.00)	-94(TATGCATATGCATT,+,0.00),-94(TATGCATATGCATT,-,0.00)	
merged_common-742	chr7	76427540	76427740	+	0.37958	NA	intron (NM_001199224, intron 15 of 22)	intron (NM_001199224, intron 15 of 22)	197753	NM_001199224	244071	Mm.322829	NM_172902	ENSMUSG00000025754	Agbl1	Ccp4|D430020F16|EG244071|Nna1-l1	ATP/GTP binding protein-like 1	protein-coding	0.010000	0.333333			
merged_common-23	chr1	72255212	72255412	+	0.37958	NA	intron (NR_155355, intron 1 of 3)	intron (NR_155355, intron 1 of 3)	11319	NR_155355	320933	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0.020000	0.452736		4(CTTGCATATGCATG,+,0.00),4(CTTGCATATGCATG,-,0.00)	
merged_common-766	chr7	139388785	139388985	+	0.37958	NA	promoter-TSS (NM_001127363)	promoter-TSS (NM_001127363)	-224	NM_001127363	212111	Mm.28308	NM_183144	ENSMUSG00000025477	Inpp5a	-	inositol polyphosphate-5-phosphatase A	protein-coding	0.030000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-2399	chr8	70506609	70506809	+	0.37958	NA	promoter-TSS (NM_001357209)	promoter-TSS (NM_001357209)	43	NM_001357209	66462	Mm.28242	NM_025577	ENSMUSG00000058833	Rex1bd	2810428I15Rik	required for excision 1-B domain containing	protein-coding	0.100000	0.736318			
ePOU_nocontrol_ChIP_peaks_unique-344	chr11	6685428	6685628	+	0.37958	NA	Intergenic	Intergenic	-25292	NR_028586	100041311	Mm.388018	NR_028586	ENSMUSG00000086373	Gm11978	-	predicted gene 11978	pseudo	0.025000	0.402985			-32(GATTTGTTTTTGTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1727	chr4	19728313	19728513	+	0.37958	NA	Intergenic	L1MA7|LINE|L1	-8527	NR_151541	102632246		NR_151541		Gm12354	-	predicted gene 12354	ncRNA	0.005000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-2554	chr9	71974785	71974985	+	0.37958	NA	intron (NM_001253862, intron 5 of 19)	intron (NM_001253862, intron 5 of 19)	-78789	NM_001253864	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.000000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-1355	chr2	29631573	29631773	+	0.37958	NA	intron (NM_001039087, intron 1 of 25)	L1M4|LINE|L1	11953	NM_054050	107746	Mm.298274	NM_054050	ENSMUSG00000039844	Rapgef1	4932418O06Rik|C3G|Grf2	Rap guanine nucleotide exchange factor (GEF) 1	protein-coding	0.005000	0.407960		55(CATGAATATGCACA,+,0.00),55(CATGAATATGCACA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1256	chr19	5771214	5771414	+	0.37958	NA	exon (NM_001361921, exon 1 of 17)	exon (NM_001361921, exon 1 of 17)	105	NM_001361921	78891	Mm.276063	NM_023912	ENSMUSG00000024941	Scyl1	2810011O19Rik|C85140|Ntkl|mdf|mfd|p105	SCY1-like 1 (S. cerevisiae)	protein-coding	0.130000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-923	chr15	91018709	91018909	+	0.37958	NA	intron (NM_001109041, intron 1 of 35)	intron (NM_001109041, intron 1 of 35)	31142	NM_001109042	16564	Mm.41379	NM_016705	ENSMUSG00000022629	Kif21a	-	kinesin family member 21A	protein-coding	0.015000	0.462687			-8(CCATTCAGATGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2139	chr6	113377730	113377930	+	0.37958	NA	promoter-TSS (NM_001170486)	promoter-TSS (NM_001170486)	-283	NM_001170485	68089	Mm.289306	NM_026552	ENSMUSG00000079426	Arpc4	20kDa|5330419I20Rik|AI327076|p20-Arc	actin related protein 2/3 complex, subunit 4	protein-coding	0.050000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-2036	chr6	15728987	15729187	+	0.37958	NA	intron (NM_175088, intron 2 of 4)	intron (NM_175088, intron 2 of 4)	8426	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.010000	0.417910			55(ATTTGAAAGGGAAGAC,-,0.00)
merged_common-55	chr1	152257442	152257642	+	0.37958	NA	Intergenic	Intergenic	129140	NM_025677	66637	Mm.379120	NM_025677	ENSMUSG00000014980	Tsen15	5730449L18Rik|AL023077|Sen15	tRNA splicing endonuclease subunit 15	protein-coding	0.000000	0.268657			-42(TTATTTTTATTCTGAT,+,0.00),-28(ATTTGCATAACAATGG,-,0.00)
merged_common-551	chr3	98363920	98364120	+	0.37958	NA	Intergenic	Lx8|LINE|L1	-18461	NM_172863	242109	Mm.358911	NM_172863	ENSMUSG00000050064	Zfp697	9430053K19|AI467503|Znf697	zinc finger protein 697	protein-coding	0.015000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-547	chr12	54696684	54696884	+	0.37958	NA	promoter-TSS (NM_025456)	promoter-TSS (NM_025456)	-890	NM_001331162	66266	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0.040000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-1081	chr17	27856774	27856974	+	0.37958	NA	intron (NM_001080769, intron 1 of 20)	CpG	367	NM_001080769	224648	Mm.291291	NM_001080769	ENSMUSG00000039512	Uhrf1bp1	1110020K19Rik|AA408674|F830021D11Rik|mKIAA4127	UHRF1 (ICBP90) binding protein 1	protein-coding	0.115000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-1781	chr4	82334155	82334355	+	0.37958	NA	intron (NM_001113209, intron 6 of 11)	intron (NM_001113209, intron 6 of 11)	171524	NM_001113209	18028	Mm.317947	NM_008687	ENSMUSG00000008575	Nfib	6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B	nuclear factor I/B	protein-coding	0.005000	0.323383	-4(GTTGAATAATGCATA,+,0.00),-4(GTTGAATAATGCATA,-,0.00)		-78(AGTTGAATAACAAAGC,-,0.00),-38(AGTTGAATGATAATAC,-,0.00)
merged_common-32	chr1	88277385	88277585	+	0.37958	NA	promoter-TSS (NM_172505)	promoter-TSS (NM_172505)	72	NM_172505	212427	Mm.384762	NM_172505		A730008H23Rik	Fleg1	RIKEN cDNA A730008H23 gene	protein-coding	0.085000	0.597015			
merged_common-307	chr15	80255215	80255415	+	0.37958	NA	5' UTR (NM_009716, exon 1 of 3)	5' UTR (NM_009716, exon 1 of 3)	131	NM_001287180	11911	Mm.641	NM_009716	ENSMUSG00000042406	Atf4	Atf-4|C/ATF|CREB2|TAXREB67	activating transcription factor 4	protein-coding	0.100000	0.611940			
merged_common-750	chr7	96151878	96152078	+	0.37958	NA	Intergenic	MIRc|SINE|MIR	-19266	NM_001310762	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.005000	0.402985			-22(ATGTGCATCATAATAG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-154	chr13	83080531	83080731	+	0.37958	NA	Intergenic	Intergenic	-382298	NR_039537	100628621		NR_039537	ENSMUSG00000106655	Mir3961	mmu-mir-3961	microRNA 3961	ncRNA	0.000000	0.378109			
merged_common-293	chr15	37939723	37939923	+	0.37958	NA	intron (NM_001357022, intron 5 of 8)	Lx8|LINE|L1	21033	NM_001357023	382985	Mm.24738	NM_199476	ENSMUSG00000022292	Rrm2b	p53R2	ribonucleotide reductase M2 B (TP53 inducible)	protein-coding	0.000000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-2531	chr9	59657196	59657396	+	0.37958	NA	intron (NM_011099, intron 1 of 10)	CpG	928	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.060000	0.562189			
merged_common-756	chr7	112855834	112856034	+	0.37958	NA	intron (NM_001166585, intron 4 of 11)	intron (NM_001166585, intron 4 of 11)	-98028	NM_175279	78748	Mm.349943	NM_175279	ENSMUSG00000098132	Rassf10	4632411J06Rik	Ras association (RalGDS/AF-6) domain family (N-terminal) member 10	protein-coding	0.010000	0.388060	-4(TATGCATTTTTTATG,-,0.00)	-10(TTTGCATATGCATT,+,0.00),-10(TTTGCATATGCATT,-,0.00)	
merged_common-453	chr2	19646271	19646471	+	0.37958	NA	Intergenic	Intergenic	-11360	NM_027715	71198	Mm.83981	NM_027715	ENSMUSG00000043415	Otud1	4933428L19Rik	OTU domain containing 1	protein-coding	0.005000	0.388060			76(ATTTGCATTACTATTT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-149	chr1	168545374	168545574	+	0.37958	NA	Intergenic	L1M5|LINE|L1	54831	NR_105766	102465178		NR_105766	ENSMUSG00000098407	Mir6348	Gm27412|mmu-mir-6348	microRNA 6348	ncRNA	0.020000	0.363184			
merged_common-314	chr15	102692938	102693138	+	0.37958	NA	Intergenic	CpG	-21172	NR_030460	751542		NR_030460	ENSMUSG00000076009	Mir688	Mirn688|mmu-mir-688	microRNA 688	ncRNA	0.130000	0.676617			-89(ATTAACATCACAATCG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-532	chr12	40278459	40278659	+	0.37958	NA	Intergenic	ORR1B2-int|LTR|ERVL-MaLR	55195	NR_045157	629820	Mm.435540	NR_045157	ENSMUSG00000035983	Gm7008	EG629820	predicted gene 7008	ncRNA	0.010000	0.388060			1(ATATACATTACAATTC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2423	chr8	83652480	83652680	+	0.37958	NA	promoter-TSS (NM_018771)	promoter-TSS (NM_018771)	-98	NM_018771	67903	Mm.20945	NM_018771	ENSMUSG00000019433	Gipc1	GIPC|Glut1CIP|Rgs19ip1|Semcap1|TIP-2|TaxIP2	GIPC PDZ domain containing family, member 1	protein-coding	0.105000	0.676617			
merged_common-411	chr18	57671204	57671404	+	0.37958	NA	intron (NM_029290, intron 6 of 6)	intron (NM_029290, intron 6 of 6)	-32719	NR_045360	70157	Mm.490532	NR_045360	ENSMUSG00000118322	2210409D07Rik	-	RIKEN cDNA 2210409D07 gene	ncRNA	0.015000	0.383085		-12(CATGCATATTCATA,+,0.00),-12(CATGCATATTCATA,-,0.00)	
merged_common-70	chr1	178338094	178338294	+	0.34177	NA	promoter-TSS (NM_016805)	promoter-TSS (NM_016805)	-379	NM_016805	51810	Mm.86589	NM_016805	ENSMUSG00000039630	Hnrnpu	AA408410|AI256620|AL024194|AL024437|AW557595|C86794|Hnrpu|SAFA|Sp120|hnRNP U	heterogeneous nuclear ribonucleoprotein U	protein-coding	0.020000	0.358209			69(CGATTGTTATGCAAAG,+,0.00)
merged_common-463	chr2	30920200	30920400	+	0.34177	NA	Intergenic	Intergenic	-17003	NM_022415	64292	Mm.28768	NM_022415	ENSMUSG00000050737	Ptges	2410099E23Rik|D2Ertd369e|Pges|mPGES|mPGES-1	prostaglandin E synthase	protein-coding	0.025000	0.487562			-65(ATTAAAAACACAAAGG,-,0.00)
merged_common-331	chr16	52950738	52950938	+	0.34177	NA	Intergenic	Intergenic	-135094	NR_040495	73820	Mm.60493	NR_040495	ENSMUSG00000116611	4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.000000	0.383085			22(ATTTAAATGAGCAAAG,-,0.00),51(CTTTGCATCATAATTC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2229	chr7	67376731	67376931	+	0.34177	NA	Intergenic	Intergenic	-3973	NM_001357325	17258	Mm.132788	NM_001033713	ENSMUSG00000030557	Mef2a	A430079H05Rik	myocyte enhancer factor 2A	protein-coding	0.015000	0.313433			
merged_common-311	chr15	95028900	95029100	+	0.34177	NA	intron (NM_178789, intron 6 of 7)	intron (NM_178789, intron 6 of 7)	120318	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA	0.025000	0.378109		40(AAGGAATATGCATA,+,0.00)	26(TTTTGCATGACAAAAA,-,0.00)
merged_common-398	chr18	32157486	32157686	+	0.34177	NA	Intergenic	(CATATA)n|Simple_repeat|Simple_repeat	-5503	NM_011946	26405	Mm.211762	NM_011946	ENSMUSG00000024383	Map3k2	9630061B06Rik|AI585793|Mekk2|Mekk2b	mitogen-activated protein kinase kinase kinase 2	protein-coding	0.000000	0.407960		-51(TATGAATATGCATG,+,0.00),-51(TATGAATATGCATG,-,0.00),-22(TATGAATATGCATG,+,0.00),-22(TATGAATATGCATG,-,0.00),64(TATGAATATGCAAT,+,0.00),64(TATGAATATGCAAT,-,0.00)	
merged_common-113	chr10	89487328	89487528	+	0.34177	NA	intron (NM_009108, intron 2 of 8)	intron (NM_009108, intron 2 of 8)	19230	NM_009108	20186	Mm.3095	NM_009108	ENSMUSG00000047638	Nr1h4	AI957360|Fxr|HRR1|RIP14|Rxrip14	nuclear receptor subfamily 1, group H, member 4	protein-coding	0.005000	0.313433			47(TTATACTTATGCAAAT,+,0.00)
merged_common-126	chr11	3172481	3172681	+	0.34177	NA	intron (NM_001363224, intron 8 of 28)	B1_Mus1|SINE|Alu	21022	NM_030207	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.015000	0.457711			
merged_common-382	chr17	83954537	83954737	+	0.34177	NA	Intergenic	Intergenic	-43915	NR_130994	78148	Mm.243918	NR_130994	ENSMUSG00000117431	8430430B14Rik	-	RIKEN cDNA 8430430B14 gene	ncRNA	0.030000	0.527363	-3(AATGCATAATTCAAG,+,0.00),-3(AATGCATAATTCAAG,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-445	chr6	94750653	94750853	+	0.34177	NA	Intergenic	MamGypLTR3a|LTR|Gypsy	-50608	NM_001355269	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.005000	0.417910			-28(GCTTTTCCATGCAAAT,+,0.00),5(CCATTGTGTTGGAAAA,+,0.00),77(CCTTTGTTATGTAGAT,+,0.00)
merged_common-108	chr10	84147644	84147844	+	0.33855	NA	Intergenic	Intergenic	-47047	NR_152790	102637349	Mm.402869	NR_152790	ENSMUSG00000111049	Gm34184	-	predicted gene, 34184	ncRNA	0.000000	0.373134			29(GAATTGTCATGTATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2505	chr9	35421127	35421327	+	0.27868	NA	Intergenic	CpG	-30849	NM_021339	57810	Mm.80509	NM_021339	ENSMUSG00000038119	Cdon	CDO|Cd0|Orcam	cell adhesion molecule-related/down-regulated by oncogenes	protein-coding	0.105000	0.686567			
ePOU_nocontrol_ChIP_peaks_unique-650	chr13	34238589	34238789	+	0.27868	NA	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	75725	NM_001110515	69666	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.020000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-531	chr12	39997734	39997934	+	0.27868	NA	Intergenic	Intergenic	39542	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.020000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-2122	chr6	96384570	96384770	+	0.27868	NA	intron (NM_182808, intron 2 of 4)	intron (NM_182808, intron 2 of 4)	-218465	NR_003643	78482	Mm.391486	NM_030107	ENSMUSG00000072878	1700123L14Rik	Npap60|Nup50	nucleoporin 50 pseudogene	pseudo	0.005000	0.412935			-77(GTATTGTTATTCAAAG,+,0.00),-31(CTTTTGAGATGCAAAT,+,0.00)
merged_common-538	chr3	65657408	65657608	+	0.27868	NA	Intergenic	Intergenic	-1780	NR_106200	102465905		NR_106200	ENSMUSG00000098944	Mir8120	Gm27637|mmu-mir-8120	microRNA 8120	ncRNA	0.015000	0.407960			
merged_common-342	chr16	91837201	91837401	+	0.27868	NA	intron (NM_001110275, intron 17 of 28)	intron (NM_001110275, intron 17 of 28)	94329	NM_138597	28080	Mm.41	NM_138597	ENSMUSG00000022956	Atp5o	ATPO|Atp5po|D12Wsu28e|OSCP	ATP synthase, H+ transporting, mitochondrial F1 complex, O subunit	protein-coding	0.030000	0.512438			
merged_common-137	chr11	22247123	22247323	+	0.27868	NA	intron (NM_153078, intron 3 of 24)	ORR1B2|LTR|ERVL-MaLR	39572	NM_153078	216565	Mm.491265	NM_153078	ENSMUSG00000042302	Ehbp1	AF424697|Flj21950|NACSIN	EH domain binding protein 1	protein-coding	0.000000	0.517413			
merged_common-354	chr17	15380656	15380856	+	0.27868	NA	Intergenic	CpG	-4933	NM_007865	13388	Mm.4875	NM_007865	ENSMUSG00000014773	Dll1	Delta1	delta like canonical Notch ligand 1	protein-coding	0.070000	0.601990			-68(ATTTACATGAGAAAAG,-,0.00),72(ATTTCCATAACAAAGC,-,0.00)
merged_common-102	chr10	67003264	67003464	+	0.27868	NA	Intergenic	Intergenic	-1711	NR_110511	102634101	Mm.445258	NR_110511	ENSMUSG00000112925	Gm31763	-	predicted gene, 31763	ncRNA	0.040000	0.542289			
merged_common-340	chr16	84931216	84931416	+	0.27868	NA	Intergenic	Intergenic	-40895	NR_045889	100038614	Mm.441351	NR_045889	ENSMUSG00000115518	Gm10791	-	predicted gene 10791	ncRNA	0.015000	0.402985			-60(ATTTGCATAAACAATA,-,0.00)
merged_common-821	chr9	24255320	24255520	+	0.27868	NA	intron (NM_175678, intron 4 of 9)	intron (NM_175678, intron 4 of 9)	157402	NM_175678	319239	Mm.130824	NM_175678	ENSMUSG00000043659	Npsr1	9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1	neuropeptide S receptor 1	protein-coding	0.005000	0.358209		-8(CATTAATATGCAAT,+,0.00)	
merged_common-502	chr2	134739346	134739546	+	0.27868	NA	Intergenic	Intergenic	-46718	NM_001145830	18795	Mm.330607	NM_019677	ENSMUSG00000051177	Plcb1	3110043I21Rik|AI132408|Plcb|mKIAA0581	phospholipase C, beta 1	protein-coding	0.005000	0.427861			-29(TCTTTGTCATGTACAT,+,0.00)
merged_common-34	chr1	89580157	89580357	+	0.27868	NA	intron (NM_001037136, intron 1 of 16)	CpG	103635	NR_015540	74403	Mm.444291	NR_015540		4933400F21Rik	1700091C04Rik|4930565K10Rik	RIKEN cDNA 4933400F21 gene	ncRNA	0.180000	0.791045			
merged_common-865	chrX	144337952	144338152	+	0.27868	NA	intron (NR_037145, intron 5 of 26)	MER5A1|DNA|hAT-Charlie	20086	NR_037145	67574	Mm.249084	NM_026247	ENSMUSG00000041718	Alg13	2810046O15Rik|4833435D08Rik|Glt28d1|MDS031	asparagine-linked glycosylation 13	protein-coding	0.000000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-187	chr1	194746846	194747046	+	0.27014	NA	intron (NM_008882, intron 5 of 31)	intron (NM_008882, intron 5 of 31)	-75055	NR_039539	100628615		NR_039539	ENSMUSG00000092633	Mir3962	mmu-mir-3962|mu-mir-3962	microRNA 3962	ncRNA	0.025000	0.487562			
merged_common-291	chr15	34578010	34578210	+	0.27014	NA	intron (NM_145469, intron 9 of 10)	intron (NM_145469, intron 9 of 10)	82799	NM_152894	67724	Mm.248779	NM_026340	ENSMUSG00000022325	Pop1	4932434G09Rik	processing of precursor 1, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.010000	0.388060			43(GTTTGCATAACAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1531	chr3	8509351	8509551	+	0.27014	NA	promoter-TSS (NM_025285)	promoter-TSS (NM_025285)	-76	NM_025285	20257	Mm.29580	NM_025285	ENSMUSG00000027500	Stmn2	AI159727|SCG10|Scgn10|Stmb2	stathmin-like 2	protein-coding	0.035000	0.527363		1(GATAATTATTCATG,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-245	chr17	47511231	47511431	+	0.27014	NA	intron (NM_001081635, intron 1 of 6)	intron (NM_001081635, intron 1 of 6)	6280	NM_001081635	12445	Mm.27291	NM_007632	ENSMUSG00000034165	Ccnd3	9230106B05Rik|AA682053|AL024085|AW146355|C78795	cyclin D3	protein-coding	0.050000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-1055	chr17	10441596	10441796	+	0.27014	NA	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	-14520	NR_077237	319750	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.025000	0.527363			-33(ATTTGCATAACACATT,-,0.00)
merged_common-269	chr14	72846064	72846264	+	0.27014	NA	Intergenic	Intergenic	-136161	NM_207636	319448	Mm.205421	NM_207636	ENSMUSG00000033487	Fndc3a	1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys	fibronectin type III domain containing 3A	protein-coding	0.015000	0.457711			-27(TGACTGTCATGTAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1516	chr2	165664592	165664792	+	0.27014	NA	intron (NM_010165, intron 1 of 15)	intron (NM_010165, intron 1 of 15)	9394	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	0.000000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-1377	chr2	50690548	50690748	+	0.27014	NA	Intergenic	L1MC4|LINE|L1	-219036	NR_033595	227885	Mm.301654	NR_033595	ENSMUSG00000083270	Gm13498	-	heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene	pseudo	0.005000	0.407960			14(ATTAGAATAGGAATGC,-,0.00),43(ACATGCACATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-410	chr11	62602704	62602904	+	0.27014	NA	promoter-TSS (NR_028550)	promoter-TSS (NR_028550)	-73	NR_030738	69221	Mm.270874	NR_030738	ENSMUSG00000086841	2410006H16Rik	-	RIKEN cDNA 2410006H16 gene	ncRNA	0.080000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1052	chr17	9723027	9723227	+	0.27014	NA	Intergenic	Intergenic	52739	NR_045433	71092	Mm.243827	NR_045433	ENSMUSG00000117264	4930452A19Rik	4933424P20Rik	RIKEN cDNA 4930452A19 gene	ncRNA	0.010000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-1255	chr19	5366732	5366932	+	0.27014	NA	promoter-TSS (NM_027236)	promoter-TSS (NM_027236)	19	NM_027236	69860	Mm.299167	NM_027236	ENSMUSG00000024841	Eif1ad	2010003J03Rik|AI131644	eukaryotic translation initiation factor 1A domain containing	protein-coding	0.090000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-1634	chr3	90604683	90604883	+	0.27014	NA	intron (NM_011311, intron 1 of 2)	intron (NM_011311, intron 1 of 2)	1013	NM_011311	20198	Mm.3925	NM_011311	ENSMUSG00000001020	S100a4	18A2|42a|Capl|FSp1|Mts1|PeL98|metastasin|pk9a	S100 calcium binding protein A4	protein-coding	0.000000	0.532338			
ePOU_nocontrol_ChIP_peaks_unique-1156	chr17	94002340	94002540	+	0.27014	NA	Intergenic	Intergenic	747579	NM_001357135	76781	Mm.139146	NM_176917	ENSMUSG00000055660	Mettl4	2410198H06Rik|A730091E08Rik|AV296509|HsT661	methyltransferase like 4	protein-coding	0.010000	0.333333			
merged_common-792	chr8	72492676	72492876	+	0.27014	NA	promoter-TSS (NM_177766)	promoter-TSS (NM_177766)	-162	NM_177766	270066	Mm.291461	NM_177766	ENSMUSG00000019731	Slc35e1	6030458H05|AA408278	solute carrier family 35, member E1	protein-coding	0.150000	0.706468			
merged_common-665	chr5	124111989	124112189	+	0.27014	NA	promoter-TSS (NM_001347478)	promoter-TSS (NM_001347478)	-232	NM_001361482	66627	Mm.7050	NM_025671	ENSMUSG00000023707	Ogfod2	1300006G11Rik|5730405M13Rik|AU041636|AW552395	2-oxoglutarate and iron-dependent oxygenase domain containing 2	protein-coding	0.075000	0.611940			
merged_common-341	chr16	87676605	87676805	+	0.27014	NA	Intergenic	Intergenic	-22249	NM_007520	12013	Mm.26147	NM_007520	ENSMUSG00000025612	Bach1	6230421P05Rik|AI323795	BTB and CNC homology 1, basic leucine zipper transcription factor 1	protein-coding	0.000000	0.293532			24(ATATTGTGATGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-508	chr12	8718831	8719031	+	0.27014	NA	intron (NM_001310519, intron 7 of 19)	intron (NM_001310519, intron 7 of 19)	44250	NM_030723	80913	Mm.341243	NM_030723	ENSMUSG00000020594	Pum2	5730503J23Rik|Pumm2	pumilio RNA-binding family member 2	protein-coding	0.005000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-1323	chr19	59113473	59113673	+	0.27014	NA	Intergenic	Intergenic	-37504	NM_001114312	71653	Mm.37338	NM_175172	ENSMUSG00000041362	Shtn1	4930506M07Rik|Shootin1|mKIAA1598	shootin 1	protein-coding	0.020000	0.378109		-58(CTTGAATATGCATA,+,0.00),-58(CTTGAATATGCATA,-,0.00)	-65(GATTTGTCTTGAATAT,+,0.00),-53(ATATGCATAATAATGG,-,0.00),60(CATTTTTTTTTTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-32	chr1	54438872	54439072	+	0.27014	NA	promoter-TSS (NM_001033194)	promoter-TSS (NM_001033194)	54	NM_001033194	98488	Mm.25856	NM_001033194	ENSMUSG00000041303	Gtf3c3	TF3C-gamma|TFIIIC102	general transcription factor IIIC, polypeptide 3	protein-coding	0.095000	0.681592			
merged_common-706	chr6	85451511	85451711	+	0.27014	NA	promoter-TSS (NM_028505)	promoter-TSS (NM_028505)	106	NM_007638	12468	Mm.289900	NM_007638	ENSMUSG00000030007	Cct7	AA408524|AL022769|Ccth|Cctz	chaperonin containing Tcp1, subunit 7 (eta)	protein-coding	0.115000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-695	chr13	81944324	81944524	+	0.27014	NA	Intergenic	Intergenic	161177	NM_007684	12626	Mm.12481	NM_007684	ENSMUSG00000021537	Cetn3	MmCEN3	centrin 3	protein-coding	0.020000	0.358209			
merged_common-418	chr18	83392379	83392579	+	0.27014	NA	Intergenic	Intergenic	-66595	NR_045361	70960	Mm.410834	NR_045361	ENSMUSG00000118333	4921531P14Rik	1700108N05Rik	RIKEN cDNA 4921531P14 gene	ncRNA	0.025000	0.432836			
merged_common-731	chr7	44869888	44870088	+	0.27014	NA	promoter-TSS (NM_133949)	promoter-TSS (NM_133949)	-320	NM_133949	84113	Mm.42855	NM_133949	ENSMUSG00000038502	Ptov1	1110030G05Rik|AU041779|Gcap3	prostate tumor over expressed gene 1	protein-coding	0.040000	0.547264			
ePOU_nocontrol_ChIP_peaks_unique-1385	chr2	59780399	59780599	+	0.27014	NA	intron (NM_198294, intron 7 of 26)	intron (NM_198294, intron 7 of 26)	102107	NM_001159636	72137	Mm.288734	NM_028118	ENSMUSG00000026988	Wdsub1	1700048E19Rik|2610014F08Rik	WD repeat, SAM and U-box domain containing 1	protein-coding	0.010000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-2419	chr8	80880190	80880390	+	0.27014	NA	5' UTR (NM_001301298, exon 1 of 11)	5' UTR (NM_001301298, exon 1 of 11)	189	NM_021356	14388	Mm.277409	NM_021356	ENSMUSG00000031714	Gab1	AA408973|AW107238	growth factor receptor bound protein 2-associated protein 1	protein-coding	0.120000	0.766169			
merged_common-593	chr4	76014351	76014551	+	0.27014	NA	intron (NR_160919, intron 29 of 39)	intron (NR_160919, intron 29 of 39)	329792	NM_001352630	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.015000	0.343284			
merged_common-330	chr16	48608549	48608749	+	0.27014	NA	intron (NM_010816, intron 20 of 26)	MLTR14|LTR|ERV1	163413	NM_198297	77647	Mm.167298	NM_198297	ENSMUSG00000030775	Trat1	C030046M14Rik|Tcrim|Trim	T cell receptor associated transmembrane adaptor 1	protein-coding	0.000000	0.388060			-37(GTTTTGTCATGGAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-21	chr1	44139583	44139783	+	0.27014	NA	intron (NM_144558, intron 8 of 9)	RLTR22_Mus|LTR|ERVK	-8061	NM_011729	22592	Mm.2213	NM_011729	ENSMUSG00000026048	Ercc5	Xpg	excision repair cross-complementing rodent repair deficiency, complementation group 5	protein-coding	0.000000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-1322	chr19	58064478	58064678	+	0.27014	NA	intron (NM_181415, intron 28 of 28)	intron (NM_181415, intron 28 of 28)	13411	NR_049196	100885835		NR_049196	ENSMUSG00000093757	Mir5623	Gm26068|mir-5623|mmu-mir-5623	microRNA 5623	ncRNA	0.020000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-311	chr10	111576012	111576212	+	0.27014	NA	Intergenic	Intergenic	18161	NR_045344	71321	Mm.410785	NR_045344	ENSMUSG00000097082	4933440J02Rik	-	RIKEN cDNA 4933440J02 gene	ncRNA	0.015000	0.482587			
merged_common-734	chr7	49347908	49348108	+	0.27014	NA	intron (NM_175272, intron 1 of 37)	intron (NM_175272, intron 1 of 37)	101819	NM_175272	78286	Mm.333881	NM_175272	ENSMUSG00000052512	Nav2	5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015	neuron navigator 2	protein-coding	0.010000	0.497512			46(GAATTCTCATGCAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2161	chr6	135252703	135252903	+	0.27014	NA	intron (NM_001080553, intron 1 of 5)	intron (NM_001080553, intron 1 of 5)	1533	NM_010352	14840	Mm.272306	NM_010352	ENSMUSG00000030206	Gsg1	-	germ cell associated 1	protein-coding	0.065000	0.577114			
ePOU_nocontrol_ChIP_peaks_unique-1656	chr3	108401774	108401974	+	0.27014	NA	intron (NM_001004177, intron 9 of 33)	intron (NM_001004177, intron 9 of 33)	13705	NM_017392	53883	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	0.035000	0.641791			
merged_common-834	chr9	61840612	61840812	+	0.27014	NA	Intergenic	L1MB5|LINE|L1	73798	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.030000	0.432836			
merged_common-690	chr6	39176337	39176537	+	0.27014	NA	intron (NM_001033430, intron 2 of 19)	intron (NM_001033430, intron 2 of 19)	30336	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.000000	0.338308			69(ATCTGCATAAGAAATT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-620	chr12	117028664	117028864	+	0.27014	NA	intron (NM_011215, intron 12 of 22)	intron (NM_011215, intron 12 of 22)	122505	NR_033538	100038689	Mm.445351	NR_033538	ENSMUSG00000099907	Gm10421	-	predicted gene 10421	ncRNA	0.015000	0.417910			19(ATCTGCATGAAATTGC,-,0.00)
merged_common-840	chr9	82975490	82975690	+	0.27014	NA	promoter-TSS (NM_001081216)	promoter-TSS (NM_001081216)	-101	NM_001081216	83946	Mm.221688	NM_031879	ENSMUSG00000032253	Phip	2810004D21Rik|4632404O06Rik|Ndrp|Wdr11	pleckstrin homology domain interacting protein	protein-coding	0.160000	0.736318			
merged_common-378	chr17	75440277	75440477	+	0.27014	NA	intron (NM_001166493, intron 1 of 16)	(CATATA)n|Simple_repeat|Simple_repeat	4472	NM_001166493	240168	Mm.329203	NM_207246	ENSMUSG00000071042	Rasgrp3	BC066069|Gm327	RAS, guanyl releasing protein 3	protein-coding	0.000000	0.338308	-12(TATACATATTTCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2436	chr8	91377284	91377484	+	0.27014	NA	intron (NM_011936, intron 1 of 8)	ORSL-2b|DNA|hAT-Tip100	63859	NM_011936	26383	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.010000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-1688	chr3	127868989	127869189	+	0.27014	NA	TTS (NM_027482)	TTS (NM_027482)	27234	NM_027482	70617	Mm.317049	NM_027482	ENSMUSG00000050549	Fam241a	2700063A17Rik|5730508B09Rik|C80506	family with sequence similarity 241, member A	protein-coding	0.010000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-2305	chr7	126487170	126487370	+	0.27014	NA	promoter-TSS (NM_001163713)	promoter-TSS (NM_001163713)	-85	NM_172745	233870	Mm.197829	NM_172745	ENSMUSG00000073838	Tufm	2300002G02Rik|C76308|C76389|EF-TuMT|EFTU	Tu translation elongation factor, mitochondrial	protein-coding	0.065000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-178	chr1	186434003	186434203	+	0.27014	NA	Intergenic	Intergenic	124578	NR_131158	320449	Mm.404477	NR_131124	ENSMUSG00000103690	A730004F24Rik	-	RIKEN cDNA A730004F24 gene	ncRNA	0.010000	0.417910			-17(ATTTTCATTAGAAATT,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-468	chr7	54887927	54888127	+	0.27014	NA	intron (NM_178705, intron 1 of 11)	intron (NM_178705, intron 1 of 11)	52782	NM_178705	233271	Mm.387344	NM_178705	ENSMUSG00000063297	Luzp2	9330154K17Rik|D130073E01	leucine zipper protein 2	protein-coding	0.000000	0.333333	15(CATGCATAAATTATG,+,0.00),15(CATGCATAAATTATG,-,0.00)		83(CTATTTTTATTGAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1222	chr18	67542184	67542384	+	0.27014	NA	intron (NM_194355, intron 4 of 16)	intron (NM_194355, intron 4 of 16)	6889	NM_176832	68166	Mm.208723	NM_176832	ENSMUSG00000024533	Spire1	6030430B19Rik|AI415299|AU022898|AW550622|Spir-1	spire type actin nucleation factor 1	protein-coding	0.005000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-2062	chr6	38730614	38730814	+	0.27014	NA	intron (NM_001294144, intron 8 of 14)	intron (NM_001294144, intron 8 of 14)	67645	NM_001101507	665180	Mm.349066	NM_001101507	ENSMUSG00000079598	Clec2l	AI414054|AW122724|Gm1064	C-type lectin domain family 2, member L	protein-coding	0.015000	0.512438			
ePOU_nocontrol_ChIP_peaks_unique-386	chr11	51619542	51619742	+	0.27014	NA	promoter-TSS (NM_026631)	promoter-TSS (NM_026631)	-131	NR_157294	52530	Mm.28203	NM_026631	ENSMUSG00000001056	Nhp2	2410130M07Rik|D11Ertd175e|Nola2	NHP2 ribonucleoprotein	protein-coding	0.045000	0.522388			
merged_common-738	chr7	72217837	72218037	+	0.27014	NA	intron (NM_001024703, intron 8 of 22)	intron (NM_001024703, intron 8 of 22)	88658	NM_001024703	244049	Mm.217412	NM_001024703	ENSMUSG00000032776	Mctp2	Gm489	multiple C2 domains, transmembrane 2	protein-coding	0.005000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-1700	chr3	137865737	137865937	+	0.27014	NA	intron (NM_001316995, intron 3 of 4)	intron (NM_001316995, intron 3 of 4)	1350	NM_001316995	51788	Mm.117541	NM_016750	ENSMUSG00000037894	H2afz	H2A.Z|H2A.Z1|H2a.z-1	H2A histone family, member Z	protein-coding	0.045000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-1600	chr3	68494042	68494242	+	0.27014	NA	promoter-TSS (NM_001282044)	promoter-TSS (NM_001282044)	-39	NM_001282044	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.080000	0.676617			
merged_common-329	chr16	43994995	43995195	+	0.27014	NA	intron (NM_001359085, intron 9 of 16)	L1MB3|LINE|L1	-15286	NM_001007460	332175	Mm.327852	NM_001007460	ENSMUSG00000036304	Zdhhc23	DHHC-23|Gm1751|Gm779|nidd	zinc finger, DHHC domain containing 23	protein-coding	0.015000	0.343284		-63(AATGAATATGCAGA,+,0.00),-63(AATGAATATGCAGA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-691	chr13	76813631	76813831	+	0.27014	NA	intron (NM_030174, intron 10 of 20)	intron (NM_030174, intron 10 of 20)	321737	NM_134071	105377	Mm.209730	NM_134071	ENSMUSG00000021597	Slf1	2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik	SMC5-SMC6 complex localization factor 1	protein-coding	0.005000	0.303483	-14(AATGAATTATGCATT,+,0.00),-14(AATGAATTATGCATT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2293	chr7	118463327	118463527	+	0.27014	NA	Intergenic	Intergenic	-15205	NM_001362179	110058	Mm.156558	NM_138649	ENSMUSG00000058420	Syt17	Bk|sytXVII	synaptotagmin XVII	protein-coding	0.015000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-738	chr13	113607789	113607989	+	0.27014	NA	intron (NM_130796, intron 1 of 1)	intron (NM_130796, intron 1 of 1)	10675	NM_130796	170625	Mm.33721	NM_130796	ENSMUSG00000042364	Snx18	Snag1	sorting nexin 18	protein-coding	0.015000	0.497512			-7(CATTTGACATTCAGAT,+,0.00)
merged_common-745	chr7	84555226	84555426	+	0.27014	NA	intron (NR_045098, intron 1 of 2)	intron (NR_045098, intron 1 of 2)	26372	NR_045098	100039239	Mm.44882	NR_045098		Gm2115	C77713	predicted gene 2115	ncRNA	0.005000	0.383085			-91(CAATTTCAATGCAAAT,+,0.00),4(ATTTGAATGGAAATTA,-,0.00)
merged_common-150	chr11	62318626	62318826	+	0.27014	NA	intron (NM_011308, intron 44 of 44)	intron (NM_011308, intron 44 of 44)	37253	NM_028360	72795	Mm.489722	NM_028360	ENSMUSG00000042298	Ttc19	2010204O13Rik|2810460C24Rik|AI505442	tetratricopeptide repeat domain 19	protein-coding	0.005000	0.373134			
merged_common-725	chr7	4124331	4124531	+	0.27014	NA	intron (NM_001001454, intron 2 of 12)	intron (NM_001001454, intron 2 of 12)	-3703	NR_033568	77323	Mm.378791	NR_033568	ENSMUSG00000086155	9430041J12Rik	-	RIKEN cDNA 9430041J12 gene	ncRNA	0.015000	0.517413			-47(ATTAGCATCACAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2462	chr8	121343748	121343948	+	0.27014	NA	Intergenic	RMER30|DNA|hAT-Charlie	198106	NM_001357259	76405	Mm.165697	NM_029597	ENSMUSG00000031809	1700018B08Rik	1700084O22Rik	RIKEN cDNA 1700018B08 gene	protein-coding	0.010000	0.402985			
Oct4_nocontrol_ChIP_peaks_unique-276	chr19	24174220	24174420	+	0.27014	NA	promoter-TSS (NM_001198985)	promoter-TSS (NM_001198985)	-131	NM_001198985	21873	Mm.104744	NM_011597	ENSMUSG00000024812	Tjp2	ZO-2	tight junction protein 2	protein-coding	0.155000	0.776119			
ePOU_nocontrol_ChIP_peaks_unique-2075	chr6	48563324	48563524	+	0.27014	NA	intron (NM_177736, intron 2 of 2)	intron (NM_177736, intron 2 of 2)	8625	NM_001110160	243371	Mm.290764	NM_177736	ENSMUSG00000073096	Lrrc61	BC027309	leucine rich repeat containing 61	protein-coding	0.000000	0.472637			-90(ACTTTATTATGTAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2390	chr8	61831443	61831643	+	0.27014	NA	intron (NM_001293772, intron 2 of 21)	intron (NM_001293772, intron 2 of 21)	71164	NM_001081390	72333	Mm.29933	NM_001081390	ENSMUSG00000058056	Palld	2410003B16Rik|6030492A02	palladin, cytoskeletal associated protein	protein-coding	0.000000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-353	chr11	20990834	20991034	+	0.27014	NA	Intergenic	Intergenic	-100390	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.010000	0.412935			-92(GCTCTGTTATGCAACT,+,0.00),72(ATGTGCATGTGAATAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2443	chr8	95310338	95310538	+	0.27014	NA	Intergenic	Intergenic	-1160	NM_028532	73407	Mm.472783	NM_028532	ENSMUSG00000090206	Tepp	1700055M20Rik	testis, prostate and placenta expressed	protein-coding	0.010000	0.393035		69(TATGCAAATTTATG,-,0.00)	
merged_common-295	chr15	50417464	50417664	+	0.27014	NA	Intergenic	Intergenic	471485	NM_001310485	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.000000	0.328358			
Oct4_nocontrol_ChIP_peaks_unique-282	chr19	34860002	34860202	+	0.27014	NA	intron (NM_001114339, intron 1 of 6)	intron (NM_001114339, intron 1 of 6)	17815	NM_023792	75735	Mm.24742	NM_023792	ENSMUSG00000033610	Pank1	Pank|Pank1b	pantothenate kinase 1	protein-coding	0.000000	0.393035			7(GTCTGAATGAGAAATG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1549	chr3	26061974	26062174	+	0.27014	NA	intron (NM_138666, intron 3 of 7)	intron (NM_138666, intron 3 of 7)	91912	NM_001357096	192167	Mm.316080	NM_138666	ENSMUSG00000063887	Nlgn1	6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070	neuroligin 1	protein-coding	0.000000	0.293532			-68(TTTTAAATGACAAAAT,-,0.00)
merged_common-360	chr17	30004796	30004996	+	0.27014	NA	promoter-TSS (NM_148926)	promoter-TSS (NM_148926)	-143	NM_148926	21769	Mm.220972	NM_148926	ENSMUSG00000044477	Zfand3	AW539211|TEG-27|Tex27	zinc finger, AN1-type domain 3	protein-coding	0.130000	0.800995			
ePOU_nocontrol_ChIP_peaks_unique-2495	chr9	21592965	21593165	+	0.27014	NA	promoter-TSS (NM_001205157)	promoter-TSS (NM_001205157)	-234	NR_038062	74766	Mm.475712	NM_138303	ENSMUSG00000032182	Yipf2	1300010K09Rik	Yip1 domain family, member 2	protein-coding	0.075000	0.646766			
Oct4_nocontrol_ChIP_peaks_unique-207	chr15	56443079	56443279	+	0.27014	NA	Intergenic	Intergenic	-246765	NR_002874	594843	Mm.484850	NR_002874	ENSMUSG00000086541	Has2os	EG594843|Has2as|Hasnt	hyaluronan synthase 2, opposite strand	ncRNA	0.010000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-506	chr12	4768975	4769175	+	0.27014	NA	promoter-TSS (NM_028376)	promoter-TSS (NM_028376)	192	NM_175431	207921	Mm.184898	NM_175431	ENSMUSG00000050545	Fam228b	A830093I24Rik	family with sequence similarity 228, member B	protein-coding	0.130000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-2394	chr8	66777397	66777597	+	0.27014	NA	Intergenic	Lx8|LINE|L1	80075	NM_010934	18166	Mm.5112	NM_010934	ENSMUSG00000036437	Npy1r	NPY1-R|Npyr|Y1-R	neuropeptide Y receptor Y1	protein-coding	0.030000	0.467662			-86(ATTTAAAAAGCAAATA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1928	chr5	44734383	44734583	+	0.27014	NA	intron (NM_001077398, intron 1 of 8)	intron (NM_001077398, intron 1 of 8)	65263	NM_001359071	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.005000	0.417910		-21(TATGAATATTCACC,+,0.00),-21(TATGAATATTCACC,-,0.00)	9(AGATTCTTATGCAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-568	chr12	71030424	71030624	+	0.27014	NA	intron (NM_001081195, intron 5 of 23)	L1MB1|LINE|L1	14557	NM_001081195	238247	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.030000	0.472637			26(GTCTGCATAAGAATGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1464	chr2	126707128	126707328	+	0.27014	NA	promoter-TSS (NM_019729)	promoter-TSS (NM_019729)	-100	NM_001252580	84092	Mm.272629	NM_019729	ENSMUSG00000027363	Usp8	AI574262|AW557536|Ubpy|mKIAA0055	ubiquitin specific peptidase 8	protein-coding	0.115000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-90	chr1	97770131	97770331	+	0.27014	NA	promoter-TSS (NM_001310773)	promoter-TSS (NM_001310773)	59	NM_026250	252876	Mm.86090	NM_026250	ENSMUSG00000026333	Gin1	4930429M06Rik|8430411H10Rik|Gin-1|Zh2c2	gypsy retrotransposon integrase 1	protein-coding	0.055000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-939	chr15	100605160	100605360	+	0.27014	NA	Intergenic	Intergenic	-5276	NM_001304965	19009	Mm.28825	NM_010127	ENSMUSG00000009739	Pou6f1	2310038G18Rik|C79593|Emb|cns-1	POU domain, class 6, transcription factor 1	protein-coding	0.020000	0.407960	56(CATGTATTATTCATG,+,0.00),56(CATGTATTATTCATG,-,0.00)	36(CGTGCATATTCATC,+,0.00),36(CGTGCATATTCATC,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1237	chr18	77938364	77938564	+	0.27014	NA	promoter-TSS (NM_001195633)	promoter-TSS (NM_001195633)	-2	NM_001195633	100502841	Mm.297782	NM_001195633	ENSMUSG00000039840	Epg5	4732475F16|5430411K18Rik|AI661957|AW456499	ectopic P-granules autophagy protein 5 homolog (C. elegans)	protein-coding	0.070000	0.651741			
merged_common-8	chr1	36006894	36007094	+	0.27014	NA	Intergenic	Intergenic	-61406	NM_015818	50785	Mm.213566	NM_015818	ENSMUSG00000045216	Hs6st1	6Ost1	heparan sulfate 6-O-sulfotransferase 1	protein-coding	0.015000	0.412935			-35(CTTTTCTTATTTAAAA,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-380	chr4	53170514	53170714	+	0.27014	NA	Intergenic	Intergenic	-10719	NM_013454	11303	Mm.277376	NM_013454	ENSMUSG00000015243	Abca1	ABC-1|Abc1	ATP-binding cassette, sub-family A (ABC1), member 1	protein-coding	0.005000	0.328358			-88(TTTTTTCTATGCAAAC,+,0.00),4(ACATATTCATGAAAAT,+,0.00),6(ATATTCATGAAAATGC,-,0.00)
merged_common-273	chr14	78203215	78203415	+	0.27014	NA	Intergenic	Intergenic	-11837	NR_035499	100316715		NR_035499	ENSMUSG00000087932	Mir1971	mmu-mir-1971	microRNA 1971	ncRNA	0.010000	0.373134	-14(TATGAATTATTCAAA,+,0.00),-14(TATGAATTATTCAAA,-,0.00)		
merged_common-774	chr8	22192739	22192939	+	0.27014	NA	promoter-TSS (NM_001368379)	promoter-TSS (NM_001368379)	6	NM_027338	70160	Mm.41453	NM_027338	ENSMUSG00000031479	Vps36	1700010A24Rik|2210415M20Rik|2810408E15Rik|Eap45	vacuolar protein sorting 36	protein-coding	0.130000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-672	chr13	51921104	51921304	+	0.27014	NA	Intergenic	Intergenic	74529	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.020000	0.557214			-6(GTTTACATAACAATCA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-245	chr10	62557915	62558115	+	0.27014	NA	TTS (NM_028197)	TTS (NM_028197)	20442	NM_028197	72320	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.000000	0.437811			
merged_common-610	chr4	122937707	122937907	+	0.27014	NA	Intergenic	Intergenic	23381	NM_029662	76574	Mm.331842	NM_029662	ENSMUSG00000028655	Mfsd2a	1700018O18Rik|Mfsd2|NLS1	major facilitator superfamily domain containing 2A	protein-coding	0.000000	0.373134			-47(TTTTGCTTGACAATAT,-,0.00)
merged_common-86	chr10	21342374	21342574	+	0.27014	NA	promoter-TSS (NR_045352)	promoter-TSS (NR_045352)	-419	NR_045352	73990	Mm.399240	NR_045352	ENSMUSG00000112654	4930455C13Rik	-	RIKEN cDNA 4930455C13 gene	ncRNA	0.010000	0.407960		-2(TATGCATAAGTATG,+,0.00),-2(TATGCATAAGTATG,-,0.00)	-3(CTATGCATAAGTATGA,-,0.00)
merged_common-759	chr7	118992584	118992784	+	0.27014	NA	intron (NM_001195774, intron 1 of 3)	intron (NM_001195774, intron 1 of 3)	2527	NM_001195774	64297	Mm.103439	NM_022420	ENSMUSG00000008734	Gprc5b	AW125761|Raig2	G protein-coupled receptor, family C, group 5, member B	protein-coding	0.010000	0.452736		-28(CATGAATATGCAAA,+,0.00),-28(CATGAATATGCAAA,-,0.00)	15(TCATTTAAATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-221	chr10	34656387	34656587	+	0.27014	NA	Intergenic	Intergenic	173087	NM_001358769	14302	Mm.332432	NM_010237	ENSMUSG00000019779	Frk	BSK|BSK/IYK|C85044|GTK|RAK	fyn-related kinase	protein-coding	0.015000	0.407960		-17(TATAAATATGAATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1155	chr17	91135789	91135989	+	0.27014	NA	Intergenic	Intergenic	-43087	NM_177284	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.000000	0.343284			
merged_common-768	chr8	4677671	4677871	+	0.27014	NA	Intergenic	CpG	64431	NM_001368404	233987	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.100000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-53	chr1	64131972	64132172	+	0.27014	NA	Intergenic	MER2|DNA|TcMar-Tigger	-10683	NM_033563	93691	Mm.29466	NM_033563	ENSMUSG00000025959	Klf7	9830124P08Rik	Kruppel-like factor 7 (ubiquitous)	protein-coding	0.005000	0.273632			
Oct4_nocontrol_ChIP_peaks_unique-297	chr2	26021640	26021840	+	0.27014	NA	promoter-TSS (NM_133835)	promoter-TSS (NM_133835)	20	NM_001362681	98766	Mm.247824	NM_133835	ENSMUSG00000036352	Ubac1	1110033G07Rik|AA407978|GBDR1|Gdbr1|Kpc2|Ubadc1	ubiquitin associated domain containing 1	protein-coding	0.120000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-896	chr15	75969089	75969289	+	0.27014	NA	promoter-TSS (NM_001361465)	promoter-TSS (NM_001361465)	66	NM_001361465	69020	Mm.294295	NM_001081065	ENSMUSG00000034429	Zfp707	1500031N24Rik|AI451708|AW495315	zinc finger protein 707	protein-coding	0.100000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-821	chr14	103378580	103378780	+	0.27014	NA	Intergenic	Intergenic	-31880	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2, E3 ubiquitin protein ligase	protein-coding	0.005000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-2444	chr8	95434849	95435049	+	0.27014	NA	promoter-TSS (NM_008187)	promoter-TSS (NM_008187)	-80	NM_008187	14894	Mm.2080	NM_008187	ENSMUSG00000031796	Cfap20	2600014O15Rik|AL024127|Gtl3|T10-2A2	cilia and flagella associated protein 20	protein-coding	0.080000	0.641791			
Oct4_nocontrol_ChIP_peaks_unique-114	chr12	32713863	32714063	+	0.27014	NA	Intergenic	Intergenic	-106372	NM_021524	59027	Mm.202727	NM_021524	ENSMUSG00000020572	Nampt	1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin	nicotinamide phosphoribosyltransferase	protein-coding	0.005000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-2196	chr7	28311956	28312156	+	0.27014	NA	promoter-TSS (NM_025616)	promoter-TSS (NM_025616)	-10	NM_025616	66525	Mm.167913	NM_025616	ENSMUSG00000003438	Timm50	2810403L02Rik|AU015082|TIM50L	translocase of inner mitochondrial membrane 50	protein-coding	0.125000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-1295	chr19	32388439	32388639	+	0.27014	NA	promoter-TSS (NR_033198)	promoter-TSS (NR_033198)	-27	NM_144792	208449	Mm.329810	NM_144792	ENSMUSG00000040451	Sgms1	9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23	sphingomyelin synthase 1	protein-coding	0.115000	0.741294			
Oct4_nocontrol_ChIP_peaks_unique-450	chr6	116119783	116119983	+	0.27014	NA	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	-62872	NM_001364577	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.015000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-1280	chr19	23758258	23758458	+	0.27014	NA	promoter-TSS (NM_177034)	promoter-TSS (NM_177034)	-518	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.090000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-1146	chr17	83136329	83136529	+	0.27014	NA	Intergenic	MER103C|DNA|hAT-Charlie	-58204	NR_045094	100503434	Mm.187281	NR_045094	ENSMUSG00000117399	Gm19689	-	predicted gene, 19689	ncRNA	0.020000	0.417910			-44(ATTTGCAAAACACTGA,-,0.00),8(ATTTGCATATCAAAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2413	chr8	74993632	74993832	+	0.27014	NA	promoter-TSS (NM_001316753)	promoter-TSS (NM_001316753)	82	NM_178017	70823	Mm.261739	NM_178017	ENSMUSG00000034518	Hmgxb4	4733401K04Rik|AI316803|Hmgb2l1	HMG box domain containing 4	protein-coding	0.130000	0.731343			
ePOU_nocontrol_ChIP_peaks_unique-630	chr13	12439695	12439895	+	0.27014	NA	TTS (NM_144835)	TTS (NM_144835)	19521	NM_001291055	56048	Mm.474138	NM_018886	ENSMUSG00000057554	Lgals8	1200015E08Rik|AI326142|D13Ertd524e|Lgals-8	lectin, galactose binding, soluble 8	protein-coding	0.005000	0.402985		7(AATAAATTTGCATG,-,0.00)	12(ATTTGCATGAAAATGA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-365	chr3	121995317	121995517	+	0.27014	NA	intron (NM_172525, intron 12 of 22)	L1MD2|LINE|L1	27611	NM_001356524	214137	Mm.229287	NM_172525	ENSMUSG00000039831	Arhgap29	6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1	Rho GTPase activating protein 29	protein-coding	0.005000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-955	chr16	13780698	13780898	+	0.27014	NA	promoter-TSS (NM_001039521)	promoter-TSS (NM_001039521)	99	NM_001039521	106298	Mm.288606	NM_001039521	ENSMUSG00000022682	Rrn3	AL023001|E130302O19Rik|R75565|TIF-1A|Tif1a	RRN3 RNA polymerase I transcription factor homolog (yeast)	protein-coding	0.140000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-1021	chr16	70728337	70728537	+	0.27014	NA	Intergenic	Intergenic	112012	NR_040474	52645	Mm.188475	NR_040474	ENSMUSG00000116792	D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.000000	0.328358			40(ATTTCAATGATAAAAT,-,0.00)
merged_common-66	chr1	171503337	171503537	+	0.27014	NA	promoter-TSS (NM_019484)	promoter-TSS (NM_019484)	-41	NM_019484	56009	Mm.389208	NM_019484	ENSMUSG00000060244	Alyref2	C130042O11Rik|REF2|Refbp2	Aly/REF export factor 2	protein-coding	0.060000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-173	chr1	182464802	182465002	+	0.27014	NA	Intergenic	Intergenic	52708	NM_009794	12334	Mm.19306	NM_009794	ENSMUSG00000026509	Capn2	AI326419|CALP80|Capa-2|Capa2|m-calpain|m-calpin	calpain 2	protein-coding	0.010000	0.368159			-18(TTTTACATAACAATCG,-,0.00)
merged_common-109	chr10	84911016	84911216	+	0.27014	NA	Intergenic	Intergenic	-6497	NM_001013441	237422	Mm.18936	NM_183172	ENSMUSG00000035620	Ric8b	BC051080|Ric-8|Ric-8b	RIC8 guanine nucleotide exchange factor B	protein-coding	0.000000	0.432836			
merged_common-19	chr1	63646604	63646804	+	0.27014	NA	intron (NM_001081658, intron 11 of 14)	L1ME4a|LINE|L1	30736	NM_001370842	105243944		NM_001370842	ENSMUSG00000115378	Gm39653	-	predicted gene, 39653	protein-coding	0.000000	0.278607			65(ATTTAAATAACTATGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2253	chr7	89541055	89541255	+	0.27014	NA	Intergenic	Intergenic	-13968	NM_001360752	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.005000	0.467662			
merged_common-315	chr15	103305252	103305452	+	0.27014	NA	Intergenic	CpG	5086	NM_030720	80910	Mm.160369	NM_030720	ENSMUSG00000063234	Gpr84	EX33	G protein-coupled receptor 84	protein-coding	0.070000	0.577114			
ePOU_nocontrol_ChIP_peaks_unique-509	chr12	9173918	9174118	+	0.27014	NA	Intergenic	Intergenic	144021	NM_029321	75516	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0.000000	0.373134	5(TATGCATTATGCATG,+,0.00),5(TATGCATTATGCATG,-,0.00)		51(CTTTTAATGAGAAAAA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-394	chr4	109676476	109676676	+	0.27014	NA	promoter-TSS (NM_007983)	promoter-TSS (NM_007983)	-51	NM_007983	14084	Mm.318259	NM_007983	ENSMUSG00000010517	Faf1	AA408698|Dffrx|Fam	Fas-associated factor 1	protein-coding	0.115000	0.696517			
merged_common-781	chr8	41374720	41374920	+	0.27014	NA	promoter-TSS (NM_019734)	promoter-TSS (NM_019734)	-123	NM_019734	11886	Mm.22547	NM_019734	ENSMUSG00000031591	Asah1	2310081N20Rik|AC|Asah	N-acylsphingosine amidohydrolase 1	protein-coding	0.095000	0.691542			
merged_common-461	chr2	30178453	30178653	+	0.27014	NA	promoter-TSS (NM_172660)	promoter-TSS (NM_172660)	-94	NM_172660	227695	Mm.4449	NM_172660	ENSMUSG00000039660	Spout1	9930028P05|AL033358|CENP-32|D2Wsu81e	SPOUT domain containing methyltransferase 1	protein-coding	0.080000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-1704	chr3	145864042	145864242	+	0.27014	NA	intron (NM_026993, intron 4 of 5)	intron (NM_026993, intron 4 of 5)	-60120	NM_009740	12042	Mm.239141	NM_009740	ENSMUSG00000028191	Bcl10	AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10	B cell leukemia/lymphoma 10	protein-coding	0.010000	0.363184			-46(TCTTTGTCATGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1750	chr4	44756391	44756591	+	0.27014	NA	promoter-TSS (NM_138590)	promoter-TSS (NM_138590)	-68	NM_138590	319885	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0.055000	0.472637			
merged_common-48	chr1	133985981	133986181	+	0.27014	NA	Intergenic	Intergenic	-51173	NM_021355	14264	Mm.287146	NM_021355	ENSMUSG00000041559	Fmod	AI131919|AU041740|FM|SLRR2E	fibromodulin	protein-coding	0.000000	0.422886			
merged_common-159	chr11	84787488	84787688	+	0.27014	NA	Intergenic	Intergenic	31927	NM_145433	217038	Mm.280825	NM_145433	ENSMUSG00000018405	Mrm1	A530065E19Rik	mitochondrial rRNA methyltransferase 1	protein-coding	0.000000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-623	chr13	4712726	4712926	+	0.27014	NA	Intergenic	Intergenic	-103662	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.010000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-1361	chr2	30848295	30848495	+	0.27014	NA	intron (NM_009116, intron 1 of 3)	intron (NM_009116, intron 1 of 3)	3028	NM_009116	20204	Mm.1802	NM_009116	ENSMUSG00000039476	Prrx2	Prx2|S8	paired related homeobox 2	protein-coding	0.025000	0.467662			
Oct4_nocontrol_ChIP_peaks_unique-461	chr6	147568566	147568766	+	0.27014	NA	intron (NM_001355713, intron 7 of 12)	intron (NM_001355713, intron 7 of 12)	92301	NM_001355713	67015	Mm.209774	NM_025911	ENSMUSG00000030301	Ccdc91	1700086G08Rik|1810060J02Rik|AU045683|AW555238|p56	coiled-coil domain containing 91	protein-coding	0.005000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-1497	chr2	151542378	151542578	+	0.27014	NA	promoter-TSS (NM_008019)	promoter-TSS (NM_008019)	-5	NM_001302077	14225	Mm.278458	NM_008019	ENSMUSG00000032966	Fkbp1a	FKBP12|Fkbp|Fkbp1	FK506 binding protein 1a	protein-coding	0.130000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-1261	chr19	6951980	6952180	+	0.27014	NA	TTS (NM_001285453)	TTS (NM_001285453)	9518	NM_001285453	12015	Mm.4387	NM_007522	ENSMUSG00000024959	Bad	AI325008|Bbc2	BCL2-associated agonist of cell death	protein-coding	0.060000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-89	chr1	95040297	95040497	+	0.27014	NA	Intergenic	RLTR12B|LTR|ERVK	242955	NR_040473	74689	Mm.399187	NR_040473	ENSMUSG00000100518	4930440C22Rik	-	RIKEN cDNA 4930440C22 gene	ncRNA	0.000000	0.318408			59(ACATTGTAATGCTTAT,+,0.00)
merged_common-612	chr4	129113118	129113318	+	0.27014	NA	intron (NM_010471, intron 2 of 3)	intron (NM_010471, intron 2 of 3)	6954	NM_001286083	15444	Mm.384452	NM_010471	ENSMUSG00000028785	Hpca	-	hippocalcin	protein-coding	0.055000	0.601990			
merged_common-74	chr1	183299225	183299425	+	0.24568	NA	intron (NM_181732, intron 1 of 9)	RLTR33|LTR|ERVK	-2032	NM_001357242	71678	Mm.392270	NM_027861	ENSMUSG00000046836	Brox	0610010K06Rik	BRO1 domain and CAAX motif containing	protein-coding	0.015000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-904	chr15	77970752	77970952	+	0.23757	NA	promoter-TSS (NM_018749)	promoter-TSS (NM_018749)	-28	NM_018749	55944	Mm.3955	NM_018749	ENSMUSG00000016554	Eif3d	66/67kDa|AA407891|Eif3s7|eIF3p66	eukaryotic translation initiation factor 3, subunit D	protein-coding	0.080000	0.522388			60(CTTTAAAAAAAAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-19	chr1	38935506	38935706	+	0.23757	NA	Intergenic	Intergenic	-3543	NM_001311788	433292	Mm.333709	NM_001011684	ENSMUSG00000067604	Nms	AB164466	neuromedin S	protein-coding	0.020000	0.368159	-99(TTTTAATTATTCATT,+,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1070	chr17	24220644	24220844	+	0.23757	NA	5' UTR (NM_028056, exon 1 of 10)	5' UTR (NM_028056, exon 1 of 10)	107	NM_028056	72016	Mm.23881	NM_028056	ENSMUSG00000024118	Tedc2	1600002H07Rik	tubulin epsilon and delta complex 2	protein-coding	0.080000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-61	chr1	72384585	72384785	+	0.23757	NA	intron (NM_001357519, intron 19 of 20)	Charlie13b|DNA|hAT-Charlie	77264	NM_001357519	22596	Mm.246952	NM_009533	ENSMUSG00000026187	Xrcc5	AI314015|CTC85|CTCBF|Ku80|Ku86	X-ray repair complementing defective repair in Chinese hamster cells 5	protein-coding	0.005000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-132	chr1	156752410	156752610	+	0.23757	NA	Intergenic	ORR1D2|LTR|ERVL-MaLR	-33600	NM_145413	215015	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	0.040000	0.522388			-23(GTTTGAATAAGAAATG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-328	chr2	154791035	154791235	+	0.23757	NA	promoter-TSS (NM_023130)	promoter-TSS (NM_023130)	25	NM_001139512	19383	Mm.221440	NM_023130	ENSMUSG00000027593	Raly	AI663842|Merc	hnRNP-associated with lethal yellow	protein-coding	0.100000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-2177	chr7	5038435	5038635	+	0.23757	NA	promoter-TSS (NM_001039532)	promoter-TSS (NM_001039532)	-89	NM_001039532	654801	Mm.333548	NM_001039532	ENSMUSG00000043290	Zfp784	C730049F21Rik|Znf784	zinc finger protein 784	protein-coding	0.100000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-498	chr11	120713593	120713793	+	0.23757	NA	promoter-TSS (NM_153545)	promoter-TSS (NM_153545)	74	NM_016665	20892	Mm.259716	NM_016665	ENSMUSG00000025144	Cenpx	Stra13	centromere protein X	protein-coding	0.075000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-2434	chr8	91070039	91070239	+	0.23757	NA	promoter-TSS (NM_001282000)	promoter-TSS (NM_001282000)	82	NM_001282000	19651	Mm.235580	NM_011250	ENSMUSG00000031666	Rbl2	PRB2|RBR-2|Rb2|p130	RB transcriptional corepressor like 2	protein-coding	0.085000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-1400	chr2	75832183	75832383	+	0.23757	NA	exon (NM_172666, exon 1 of 20)	exon (NM_172666, exon 1 of 20)	106	NM_172666	228061	Mm.31227	NM_172666	ENSMUSG00000042410	Agps	5832437L22|9930035G10Rik|AW123847|Adaps|Adas|Adhaps|Adps|Aldhpsy|bs2	alkylglycerone phosphate synthase	protein-coding	0.185000	0.786070			
ePOU_nocontrol_ChIP_peaks_unique-238	chr10	58512682	58512882	+	0.23757	NA	intron (NM_001162956, intron 5 of 15)	intron (NM_001162956, intron 5 of 15)	14845	NM_001162956	76138	Mm.211744	NM_001162956	ENSMUSG00000038010	Ccdc138	6230424H07Rik|BC042726	coiled-coil domain containing 138	protein-coding	0.000000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-222	chr10	36974270	36974470	+	0.23757	NA	promoter-TSS (NM_008229)	promoter-TSS (NM_008229)	-174	NM_008229	15182	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.105000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-87	chr1	92473551	92473751	+	0.23757	NA	intron (NM_024197, intron 1 of 9)	CpG	107	NM_024197	67273	Mm.248778	NM_024197	ENSMUSG00000026260	Ndufa10	2900053E13Rik	NADH:ubiquinone oxidoreductase subunit A10	protein-coding	0.140000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-248	chr10	62687040	62687240	+	0.23757	NA	intron (NM_001364705, intron 1 of 3)	intron (NM_001364705, intron 1 of 3)	4632	NR_106074	102465987		NR_106074	ENSMUSG00000105329	Mir7215	mmu-mir-7215	microRNA 7215	ncRNA	0.020000	0.512438			-92(ATATGCAAGAGAGTAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-324	chr10	120810611	120810811	+	0.23757	NA	intron (NM_177092, intron 5 of 6)	intron (NM_177092, intron 5 of 6)	44979	NR_038000	70874	Mm.427286	NR_038000	ENSMUSG00000044544	4921513I03Rik	-	RIKEN cDNA 4921513I03 gene	ncRNA	0.020000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-954	chr16	13130666	13130866	+	0.23757	NA	intron (NM_015769, intron 8 of 10)	intron (NM_015769, intron 8 of 10)	21030	NM_015769	50505	Mm.287837	NM_015769	ENSMUSG00000022545	Ercc4	AI606920|Xpf	excision repair cross-complementing rodent repair deficiency, complementation group 4	protein-coding	0.020000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-844	chr15	12117609	12117809	+	0.23757	NA	promoter-TSS (NM_011767)	promoter-TSS (NM_011767)	-142	NM_011767	22763	Mm.273496	NM_011767	ENSMUSG00000022201	Zfr	C920030H05Rik	zinc finger RNA binding protein	protein-coding	0.095000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-1632	chr3	90265294	90265494	+	0.23757	NA	5' UTR (NM_001356483, exon 1 of 28)	5' UTR (NM_001356483, exon 1 of 28)	159	NM_001356483	229541	Mm.30571	NM_201407	ENSMUSG00000042404	Dennd4b	-	DENN/MADD domain containing 4B	protein-coding	0.125000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-481	chr11	115564180	115564380	+	0.23757	NA	promoter-TSS (NM_001002929)	promoter-TSS (NM_001002929)	-164	NM_001002929	445007	Mm.4379	NM_001002929	ENSMUSG00000020739	Nup85	Pcnt1|frount	nucleoporin 85	protein-coding	0.040000	0.572139			
merged_common-389	chr18	14109266	14109466	+	0.23757	NA	Intergenic	L1ME1|LINE|L1	-122940	NR_045373	74529	Mm.400519	NR_045373	ENSMUSG00000117633	8430422H06Rik	-	RIKEN cDNA 8430422H06 gene	ncRNA	0.010000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-455	chr11	96916445	96916645	+	0.23757	NA	promoter-TSS (NM_001308183)	promoter-TSS (NM_001308183)	-31	NM_001363255	80280	Mm.28297	NM_030248	ENSMUSG00000018669	Cdk5rap3	1810007E24Rik|BC002318|C53|C81486|HSF-27|IC53|LZAP|MST016	CDK5 regulatory subunit associated protein 3	protein-coding	0.085000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-2214	chr7	44997364	44997564	+	0.23757	NA	promoter-TSS (NM_016849)	promoter-TSS (NM_016849)	115	NM_029410	75736	Mm.261006	NM_029410	ENSMUSG00000003190	Bcl2l12	2810475P17Rik|5430429M05Rik|Bcl-L12|Bcl2-L12	BCL2-like 12 (proline rich)	protein-coding	0.060000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-1572	chr3	51091930	51092130	+	0.23757	NA	Intergenic	L3|LINE|CR1	-132417	NM_009834	12457	Mm.86541	NM_009834	ENSMUSG00000023087	Noct	AU043840|Ccr4|Ccrn4l	nocturnin	protein-coding	0.000000	0.328358			
ePOU_nocontrol_ChIP_peaks_unique-2033	chr6	13883213	13883413	+	0.23757	NA	intron (NR_045995, intron 2 of 2)	intron (NR_045995, intron 2 of 2)	11744	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.000000	0.323383			
ePOU_nocontrol_ChIP_peaks_unique-595	chr12	96124481	96124681	+	0.23757	NA	Intergenic	Intergenic	-77359	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.005000	0.398010	61(TATAAATAATGCATG,+,0.00),61(TATAAATAATGCATG,-,0.00)		
merged_common-829	chr9	50782504	50782704	+	0.23757	NA	intron (NR_045601, intron 3 of 13)	intron (NR_045601, intron 3 of 13)	7379	NR_045601	102580	Mm.160035	NM_133981	ENSMUSG00000032059	Alg9	8230402H15Rik|AI747665|B430313H07Rik|Dibd1	asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase)	protein-coding	0.010000	0.388060		-7(CTTTCATATGCATG,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-870	chr15	44815274	44815474	+	0.23757	NA	Intergenic	Intergenic	-27311	NM_001032727	319613	Mm.207715	NM_176998	ENSMUSG00000022340	Sybu	Golsyn	syntabulin (syntaxin-interacting)	protein-coding	0.000000	0.283582			
ePOU_nocontrol_ChIP_peaks_unique-1457	chr2	121079955	121080155	+	0.23757	NA	intron (NM_001362724, intron 1 of 12)	L1MD3|LINE|L1	5786	NM_028799	74176	Mm.20187	NM_028799	ENSMUSG00000053675	Tgm5	2310007C07Rik|TGMX|TGase-5|TGx	transglutaminase 5	protein-coding	0.000000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-1090	chr17	32073164	32073364	+	0.23757	NA	Intergenic	Intergenic	18159	NR_027316	435518	Mm.328944	NR_027316	ENSMUSG00000002791	Pdxk-ps	Gm9743	pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene	pseudo	0.015000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-1787	chr4	84492134	84492334	+	0.23757	NA	intron (NM_001369082, intron 2 of 5)	intron (NM_001369082, intron 2 of 5)	117963	NM_001369081	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.010000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-2642	chrX	130452206	130452406	+	0.23757	NA	intron (NM_172493, intron 26 of 26)	intron (NM_172493, intron 26 of 26)	702564	NM_172493	54004	Mm.10763	NM_017398	ENSMUSG00000034480	Diaph2	Dia3|Diap2|Drf2|E430022I22Rik	diaphanous related formin 2	protein-coding	0.015000	0.388060			41(ATTTGCATAACTGAAT,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-109	chr12	12890018	12890218	+	0.23757	NA	Intergenic	MTC-int|LTR|ERVL-MaLR	51718	NM_008709	18109	Mm.16469	NM_008709	ENSMUSG00000037169	Mycn	N-myc|Nmyc|Nmyc-1|Nmyc1|bHLHe37|c-nmyc	v-myc avian myelocytomatosis viral related oncogene, neuroblastoma derived	protein-coding	0.000000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-1484	chr2	143713216	143713416	+	0.23757	NA	intron (NM_008792, intron 5 of 11)	intron (NM_008792, intron 5 of 11)	75870	NR_040625	378775	Mm.441313	NR_040625	ENSMUSG00000087115	Pcsk2os2	9430032N09Rik|Gm12360	proprotein convertase subtilisin/kexin type 2, opposite strand 2	ncRNA	0.005000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-1251	chr18	90581118	90581318	+	0.23757	NA	intron (NM_001362365, intron 1 of 3)	RLTR11B|LTR|ERVK	1393	NM_001362365	108168395	Mm.391131	NM_001362365	ENSMUSG00000110277	Gm45871	-	predicted gene 45871	protein-coding	0.000000	0.457711			
Oct4_nocontrol_ChIP_peaks_unique-446	chr6	99439763	99439963	+	0.23757	NA	intron (NM_001347345, intron 1 of 19)	intron (NM_001347345, intron 1 of 19)	-4518	NM_053202	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.015000	0.477612			-98(CGTTTGTTTTTTAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-220	chr10	31169203	31169403	+	0.23757	NA	Intergenic	Intergenic	-144102	NM_027168	69692	Mm.245537	NM_027168	ENSMUSG00000000295	Hddc2	2310057G13Rik	HD domain containing 2	protein-coding	0.005000	0.383085			61(CCATTGTAAATCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2060	chr6	35289052	35289252	+	0.23757	NA	intron (NM_172892, intron 3 of 15)	intron (NM_172892, intron 3 of 15)	18974	NM_172892	243755	Mm.23666	NM_172892	ENSMUSG00000029843	Slc13a4	9630060C05Rik|SUT-1|SUT1	solute carrier family 13 (sodium/sulfate symporters), member 4	protein-coding	0.025000	0.522388			-42(ATTTGAAAGACTAATG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-230	chr16	43091700	43091900	+	0.23757	NA	intron (NM_001285805, intron 2 of 10)	Lx9|LINE|L1	136220	NR_002445	170658	Mm.375824	NR_002445		BC002163	-	NADH dehydrogenase Fe-S protein 5 pseudogene	pseudo	0.005000	0.368159		-28(TATAAATATGCATA,+,0.00),-28(TATAAATATGCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-448	chr11	86807679	86807879	+	0.23757	NA	promoter-TSS (NM_026191)	promoter-TSS (NM_026191)	-119	NM_026191	67487	Mm.260627	NM_026191	ENSMUSG00000018425	Dhx40	2410016C14Rik|ARG147|DDX40|PAD	DEAH (Asp-Glu-Ala-His) box polypeptide 40	protein-coding	0.080000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-145	chr1	165252252	165252452	+	0.23757	NA	Intergenic	Intergenic	-15392	NM_001357410	226591	Mm.21520	NM_145513	ENSMUSG00000040843	Tiprl	1810011K17Rik	TIP41, TOR signalling pathway regulator-like (S. cerevisiae)	protein-coding	0.015000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-1349	chr2	25255277	25255477	+	0.23757	NA	promoter-TSS (NM_001252541)	promoter-TSS (NM_001252541)	37	NM_001252542	78797	Mm.40020	NM_178239	ENSMUSG00000006471	Ndor1	4930447P04Rik|NR1|Ndor|Tg(UBC-cre/ERT2)1Ejb|Ubc-cre	NADPH dependent diflavin oxidoreductase 1	protein-coding	0.065000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-797	chr14	70766648	70766848	+	0.23757	NA	promoter-TSS (NM_023045)	promoter-TSS (NM_023045)	-120	NM_023045	65246	Mm.152987	NM_023045	ENSMUSG00000022100	Xpo7	4930506C02Rik|BB164534|Ranbp16|exp7	exportin 7	protein-coding	0.125000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-831	chr14	120604158	120604358	+	0.23757	NA	Intergenic	Intergenic	125797	NM_029519	76108	Mm.261448	NM_029519	ENSMUSG00000051615	Rap2a	5830461H18Rik	RAS related protein 2a	protein-coding	0.005000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-1511	chr2	161177610	161177810	+	0.23757	NA	Intergenic	Intergenic	-68624	NM_173368	71389	Mm.122738	NM_173368	ENSMUSG00000057133	Chd6	5430439G14Rik|6330406J24Rik|CHD-6	chromodomain helicase DNA binding protein 6	protein-coding	0.030000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-2032	chr6	13463616	13463816	+	0.23757	NA	Intergenic	Intergenic	50379	NR_038149	69413	Mm.177847	NR_038149	ENSMUSG00000101894	1700016P04Rik	-	RIKEN cDNA 1700016P04 gene	ncRNA	0.000000	0.288557			
Oct4_nocontrol_ChIP_peaks_unique-208	chr15	57892439	57892639	+	0.23757	NA	promoter-TSS (NM_024207)	promoter-TSS (NM_024207)	-121	NM_024207	67819	Mm.289387	NM_024207	ENSMUSG00000022365	Derl1	1110021N07Rik|AI195141|AW551338|Derlin-1	Der1-like domain family, member 1	protein-coding	0.080000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-373	chr11	39160404	39160604	+	0.23757	NA	Intergenic	Intergenic	229721	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	0.005000	0.288557			-58(ATTTAAAAGTGAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2648	chrX	167567198	167567398	+	0.23757	NA	intron (NM_001368936, intron 4 of 16)	intron (NM_001368936, intron 4 of 16)	-184549	NM_026662	110639	Mm.272955	NM_026662	ENSMUSG00000025742	Prps2	2610101M19Rik|AA589463|AI464149|Prps-2	phosphoribosyl pyrophosphate synthetase 2	protein-coding	0.010000	0.348259			
Oct4_nocontrol_ChIP_peaks_unique-363	chr3	113930883	113931083	+	0.23757	NA	Intergenic	Intergenic	-99557	NM_007729	12814	Mm.209715	NM_007729	ENSMUSG00000027966	Col11a1	C530001D20Rik|cho	collagen, type XI, alpha 1	protein-coding	0.000000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-1608	chr3	76419847	76420047	+	0.23757	NA	intron (NM_178673, intron 5 of 15)	intron (NM_178673, intron 5 of 15)	344364	NM_001253719	213262	Mm.379337	NM_178673	ENSMUSG00000034098	Fstl5	9130207J01Rik	follistatin-like 5	protein-coding	0.000000	0.263682			
ePOU_nocontrol_ChIP_peaks_unique-356	chr11	24151625	24151825	+	0.23757	NA	intron (NM_001242934, intron 2 of 3)	intron (NM_001242934, intron 2 of 3)	71030	NM_001159290	14025	Mm.53687	NM_016707	ENSMUSG00000000861	Bcl11a	2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809	B cell CLL/lymphoma 11A (zinc finger protein)	protein-coding	0.005000	0.323383			
ePOU_nocontrol_ChIP_peaks_unique-533	chr12	40614477	40614677	+	0.23757	NA	intron (NM_172803, intron 1 of 52)	intron (NM_172803, intron 1 of 52)	168524	NM_172803	238130	Mm.341423	NM_172803	ENSMUSG00000035954	Dock4	5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716	dedicator of cytokinesis 4	protein-coding	0.005000	0.358209			-68(ATTTACCTAATAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2217	chr7	46727558	46727758	+	0.23757	NA	TTS (NM_011316)	TTS (NM_011316)	4945	NM_011316	20211	Mm.3489	NM_011316	ENSMUSG00000040017	Saa4	Saa-4|Saa-5	serum amyloid A 4	protein-coding	0.005000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-1907	chr5	29811615	29811815	+	0.23757	NA	Intergenic	RLTR13G|LTR|ERVK	-75779	NR_028426	332993	Mm.473746	NR_028426		Gm5129	EG332993	predicted gene 5129	ncRNA	0.010000	0.467662	3(CATGAATAATGCAAT,+,0.00),3(CATGAATAATGCAAT,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-159	chr13	102957875	102958075	+	0.23757	NA	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	197720	NR_130318	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.015000	0.457711			14(CCAGTGTCATGCAGAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-762	chr14	31197744	31197944	+	0.23757	NA	intron (NM_022656, intron 3 of 20)	L1MB7|LINE|L1	8982	NM_022656	64652	Mm.298728	NM_022656	ENSMUSG00000021910	Nisch	1200007D05Rik|3202002H23Rik|AW494485|I-1|edsn	nischarin	protein-coding	0.005000	0.358209			
Oct4_nocontrol_ChIP_peaks_unique-337	chr3	16183374	16183574	+	0.23757	NA	5' UTR (NM_001358043, exon 1 of 5)	5' UTR (NM_001358043, exon 1 of 5)	309	NM_001145919	229096	Mm.23834	NM_172677	ENSMUSG00000047213	Ythdf3	9130022A11Rik	YTH N6-methyladenosine RNA binding protein 3	protein-coding	0.120000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-1360	chr2	30450579	30450779	+	0.23757	NA	Intergenic	B3A|SINE|B2	8826	NR_156127	110854	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.005000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-2481	chr9	13195470	13195670	+	0.23757	NA	Intergenic	Intergenic	50171	NM_001033181	77532	Mm.459434	NM_001033181	ENSMUSG00000079083	Jrkl	C030035D04Rik|HHMJG	Jrk-like	protein-coding	0.010000	0.328358			
ePOU_nocontrol_ChIP_peaks_unique-1026	chr16	73724514	73724714	+	0.23757	NA	Intergenic	Intergenic	617453	NR_030464	751561		NR_030464	ENSMUSG00000104758	Mir691	Mirn691|mir-691|mmu-mir-691	microRNA 691	ncRNA	0.015000	0.348259			
Oct4_nocontrol_ChIP_peaks_unique-497	chr8	24514292	24514492	+	0.23757	NA	Intergenic	Intergenic	61941	NM_145949	209176	Mm.219580	NM_145949	ENSMUSG00000031549	Ido2	AI265623|C230043N17Rik|Ido-2|Indol1	indoleamine 2,3-dioxygenase 2	protein-coding	0.015000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-1111	chr17	53479197	53479397	+	0.23757	NA	promoter-TSS (NM_025887)	promoter-TSS (NM_025887)	63	NM_025887	271457	Mm.329123	NM_025887	ENSMUSG00000017831	Rab5a	2410015H04Rik|AI663973|AU021172|nnyRab5a	RAB5A, member RAS oncogene family	protein-coding	0.135000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-2334	chr7	145139263	145139463	+	0.23757	NA	Intergenic	ORR1F-int|LTR|ERVL-MaLR	68756	NM_001369202	100040049	Mm.102235	NM_001369202	ENSMUSG00000109305	Smim38	1810010D01Rik|Gm2572	small integral membrane protein 38	protein-coding	0.005000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-192	chr10	9603718	9603918	+	0.23757	NA	Intergenic	(GA)n|Simple_repeat|Simple_repeat	71390	NM_177271	320825	Mm.101115	NM_177271	ENSMUSG00000060487	Samd5	E130306M17Rik	sterile alpha motif domain containing 5	protein-coding	0.005000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-1702	chr3	139031110	139031310	+	0.23757	NA	intron (NM_001356388, intron 2 of 13)	intron (NM_001356388, intron 2 of 13)	43991	NM_145544	229877	Mm.28893	NM_145544	ENSMUSG00000028149	Rap1gds1	BC011279|GDS1	RAP1, GTP-GDP dissociation stimulator 1	protein-coding	0.010000	0.308458	78(AATCAATTATTGATT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-625	chr13	5405474	5405674	+	0.23757	NA	Intergenic	Intergenic	452518	NR_045891	71867	Mm.179181	NR_045891	ENSMUSG00000100625	1700016G22Rik	-	RIKEN cDNA 1700016G22 gene	ncRNA	0.000000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-2072	chr6	46737681	46737881	+	0.23757	NA	intron (NM_001004357, intron 13 of 23)	URR1A|DNA|hAT-Charlie	-506615	NM_025771	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.005000	0.358209	25(CATGAATAATGTAAG,+,0.00),25(CATGAATAATGTAAG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2258	chr7	90457347	90457547	+	0.23757	NA	promoter-TSS (NM_025460)	promoter-TSS (NM_025460)	-244	NR_157050	66271	Mm.28963	NM_025460	ENSMUSG00000030615	Tmem126a	1810020E01Rik	transmembrane protein 126A	protein-coding	0.055000	0.567164			
ePOU_nocontrol_ChIP_peaks_unique-121	chr1	150015907	150016107	+	0.23757	NA	Intergenic	Intergenic	-54717	NM_008869	18783	Mm.4186	NM_008869	ENSMUSG00000056220	Pla2g4a	Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha	phospholipase A2, group IVA (cytosolic, calcium-dependent)	protein-coding	0.010000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-1345	chr2	20642634	20642834	+	0.23757	NA	intron (NM_001081006, intron 3 of 21)	intron (NM_001081006, intron 3 of 21)	123221	NM_001369134	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.000000	0.293532			
ePOU_nocontrol_ChIP_peaks_unique-975	chr16	22917318	22917518	+	0.23757	NA	promoter-TSS (NM_001083905)	promoter-TSS (NM_001083905)	-964	NM_001083905	59083	Mm.28461	NM_021564	ENSMUSG00000022871	Fetub	2310011O17Rik|AI255764|D17980|Gugu	fetuin beta	protein-coding	0.010000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-1380	chr2	55142864	55143064	+	0.23757	NA	Intergenic	L1_Rod|LINE|L1	-293006	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.010000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-1296	chr19	33023537	33023737	+	0.23757	NA	Intergenic	Intergenic	-133475	NR_039552	100628575		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.005000	0.298507			
merged_common-862	chrX	99556680	99556880	+	0.23757	NA	Intergenic	L1M5|LINE|L1	-86045	NM_001083110	18744	Mm.8211	NM_008853	ENSMUSG00000034403	Pja1	praja-1	praja ring finger ubiquitin ligase 1	protein-coding	0.010000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-2043	chr6	18848530	18848730	+	0.23757	NA	promoter-TSS (NM_133939)	promoter-TSS (NM_133939)	-5	NM_133939	76522	Mm.275158	NM_133939	ENSMUSG00000044155	Lsm8	2010003I05Rik|AW214405|Naa38	LSM8 homolog, U6 small nuclear RNA associated	protein-coding	0.115000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-1761	chr4	55049221	55049421	+	0.23757	NA	intron (NM_172867, intron 7 of 12)	intron (NM_172867, intron 7 of 12)	101376	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip|Znf462	zinc finger protein 462	protein-coding	0.015000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-1817	chr4	106910325	106910525	+	0.23757	NA	Intergenic	Intergenic	-1045	NM_023672	72475	Mm.195635	NM_023672	ENSMUSG00000061887	Ssbp3	2610021L12Rik|2610200M23Rik|5730488C10Rik|AI854733|AW551939|LAST|SSDP1	single-stranded DNA binding protein 3	protein-coding	0.020000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-1453	chr2	118598239	118598439	+	0.23757	NA	5' UTR (NM_009773, exon 1 of 23)	5' UTR (NM_009773, exon 1 of 23)	128	NM_009773	12236	Mm.29133	NM_009773	ENSMUSG00000040084	Bub1b	AU045529|BUBR1	BUB1B, mitotic checkpoint serine/threonine kinase	protein-coding	0.065000	0.552239			
ePOU_nocontrol_ChIP_peaks_unique-1207	chr18	54760611	54760811	+	0.23757	NA	Intergenic	Intergenic	148967	NR_045400	328957	Mm.402781	NR_045400	ENSMUSG00000118154	9330117O12Rik	9330117O12	RIKEN cDNA 9330117O12 gene	ncRNA	0.010000	0.432836			-16(CCATTTAAATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1672	chr3	117120442	117120642	+	0.23757	NA	Intergenic	Intergenic	-42777	NR_038029	433646	Mm.158997	NR_038029	ENSMUSG00000028009	1700061I17Rik	-	RIKEN cDNA 1700061I17 gene	ncRNA	0.015000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-1075	chr17	25832986	25833186	+	0.23757	NA	promoter-TSS (NM_019719)	promoter-TSS (NM_019719)	-167	NM_019719	56424	Mm.277599	NM_019719	ENSMUSG00000039615	Stub1	0610033N24Rik|2210017D18Rik|2310040B03Rik|AW046544|Chip	STIP1 homology and U-Box containing protein 1	protein-coding	0.080000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-2631	chrX	57053399	57053599	+	0.23757	NA	promoter-TSS (NM_029371)	promoter-TSS (NM_029371)	-71	NM_028242	72459	Mm.2152	NM_028242	ENSMUSG00000067873	Htatsf1	1600023H17Rik|2600017A12Rik|2700077B20Rik|TAT-SF1	HIV TAT specific factor 1	protein-coding	0.135000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-3	chr1	7088866	7089066	+	0.23757	NA	promoter-TSS (NM_183028)	promoter-TSS (NM_183028)	46	NM_183028	319263	Mm.21539	NM_183028	ENSMUSG00000051285	Pcmtd1	8430411F12Rik|A030012M09Rik	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1	protein-coding	0.115000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-1796	chr4	91376418	91376618	+	0.23757	NA	promoter-TSS (NM_001357188)	promoter-TSS (NM_001357188)	-22	NM_001347149	15569	Mm.318042	NM_010486	ENSMUSG00000008489	Elavl2	Hub|mel-N1	ELAV like RNA binding protein 1	protein-coding	0.075000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-888	chr15	64580231	64580431	+	0.23757	NA	Intergenic	Intergenic	-197412	NM_001276467	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.010000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-1989	chr5	122811282	122811482	+	0.23757	NA	intron (NM_001042491, intron 5 of 16)	intron (NM_001042491, intron 5 of 16)	9960	NM_021505	59008	Mm.332667	NM_021505	ENSMUSG00000029472	Anapc5	2510006G12Rik|AA408751|AA536819|AA986414|APC5|Anpc5	anaphase-promoting complex subunit 5	protein-coding	0.005000	0.457711			66(ATTTGCAACACTAATA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2447	chr8	98071386	98071586	+	0.23757	NA	Intergenic	Intergenic	-940401	NR_110579	100873092	Mm.414599	NR_110579	ENSMUSG00000089819	Gm15679	-	predicted gene 15679	ncRNA	0.015000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-217	chr10	27593043	27593243	+	0.23757	NA	intron (NM_008481, intron 1 of 63)	intron (NM_008481, intron 1 of 63)	23799	NM_008481	16773	Mm.256087	NM_008481	ENSMUSG00000019899	Lama2	5830440B04|dy|mKIAA4087|mer|merosin	laminin, alpha 2	protein-coding	0.010000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-1180	chr18	32748656	32748856	+	0.23757	NA	intron (NR_045381, intron 2 of 4)	intron (NR_045381, intron 2 of 4)	-66627	NM_021367	53603	Mm.143716	NM_021367	ENSMUSG00000024379	Tslp	-	thymic stromal lymphopoietin	protein-coding	0.005000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-2210	chr7	38174028	38174228	+	0.23757	NA	Intergenic	Intergenic	-9089	NM_001085385	72244	Mm.187554	NM_028166		1600014C10Rik	AI428873	RIKEN cDNA 1600014C10 gene	protein-coding	0.045000	0.502488			11(ATCTCAATAATAAAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-685	chr13	72060210	72060410	+	0.23757	NA	Intergenic	Intergenic	-96587	NM_010573	16371	Mm.316056	NM_010573	ENSMUSG00000060969	Irx1	-	Iroquois homeobox 1	protein-coding	0.010000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-1755	chr4	48271872	48272072	+	0.23757	NA	intron (NM_001355184, intron 1 of 10)	intron (NM_001355184, intron 1 of 10)	7617	NM_029572	76299	Mm.317701	NM_029572	ENSMUSG00000028343	Erp44	1110001E24Rik|AI849526|AL033348|Txndc4	endoplasmic reticulum protein 44	protein-coding	0.000000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-2627	chrX	22850108	22850308	+	0.23757	NA	Intergenic	Intergenic	388612	NR_033731	76705	Mm.399727	NM_029707		Ppp1r2-ps7	1700023I07Rik	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 7	pseudo	0.010000	0.462687	22(CATGCATTATTTATG,+,0.00),22(CATGCATTATTTATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2347	chr8	11550403	11550603	+	0.23757	NA	exon (NM_001359137, exon 1 of 15)	exon (NM_001359137, exon 1 of 15)	268	NM_001359137	71941	Mm.196576	NM_024248	ENSMUSG00000056228	Cars2	2310051N18Rik|2410044A07Rik|D530030H10Rik|cysRS	cysteinyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.095000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-66	chr1	81516732	81516932	+	0.23757	NA	Intergenic	Intergenic	439425	NM_001356397	241134	Mm.313904	NM_172849	ENSMUSG00000054976	Nyap2	9430031J16Rik|Jr6|Kiaa1486	neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2	protein-coding	0.015000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-175	chr1	183389032	183389232	+	0.23757	NA	5' UTR (NM_001277958, exon 1 of 11)	5' UTR (NM_001277958, exon 1 of 11)	147	NM_001277959	21339	Mm.383556	NM_021466	ENSMUSG00000072258	Taf1a	TAFI48|mTAFI48	TATA-box binding protein associated factor, RNA polymerase I, A	protein-coding	0.055000	0.547264			
ePOU_nocontrol_ChIP_peaks_unique-1940	chr5	73280289	73280489	+	0.23757	NA	intron (NR_040689, intron 1 of 2)	intron (NR_040689, intron 1 of 2)	3795	NR_040687	72276	Mm.271215	NR_040687	ENSMUSG00000100175	1700025M24Rik	-	RIKEN cDNA 1700025M24 gene	ncRNA	0.000000	0.338308			
ePOU_nocontrol_ChIP_peaks_unique-1563	chr3	38618044	38618244	+	0.23757	NA	Intergenic	Intergenic	-133328	NM_001167883	99696	Mm.290937	NM_001033198	ENSMUSG00000044864	Ankrd50	AI662170|E430012K20Rik|mKIAA1223|mKIAA3019	ankyrin repeat domain 50	protein-coding	0.010000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-779	chr14	51089070	51089270	+	0.23757	NA	Intergenic	Intergenic	-1907	NM_001161731	11727	Mm.202665	NM_007447	ENSMUSG00000072115	Ang	AI385586|Ang1|Rnase5|Rnase5a	angiogenin, ribonuclease, RNase A family, 5	protein-coding	0.040000	0.547264			
ePOU_nocontrol_ChIP_peaks_unique-1699	chr3	137623823	137624023	+	0.23757	NA	intron (NM_030143, intron 1 of 2)	intron (NM_030143, intron 1 of 2)	251	NM_030143	73284	Mm.250841	NM_030143	ENSMUSG00000046818	Ddit4l	1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1	DNA-damage-inducible transcript 4-like	protein-coding	0.055000	0.597015			
Oct4_nocontrol_ChIP_peaks_unique-466	chr7	43545499	43545699	+	0.23757	NA	Intergenic	Intergenic	-12428	NM_021293	12489	Mm.140157	NM_021293	ENSMUSG00000004609	Cd33	Siglec-3|gp67	CD33 antigen	protein-coding	0.000000	0.268657		-36(CATATATATGCATA,+,0.00),-30(TATGCATATATATT,+,0.00),-30(TATGCATATATATT,-,0.00),28(CATCCATATACATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1807	chr4	100963721	100963921	+	0.23757	NA	intron (NM_198037, intron 8 of 26)	intron (NM_198037, intron 8 of 26)	-105217	NM_183024	242570	Mm.185636	NM_183024	ENSMUSG00000035275	Raver2	A430091O22Rik	ribonucleoprotein, PTB-binding 2	protein-coding	0.025000	0.378109			-69(CATTTGTAATTAAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-85	chr1	90718446	90718646	+	0.23757	NA	Intergenic	Intergenic	115121	NM_133805	108679	Mm.119177	NM_133805	ENSMUSG00000034432	Cops8	9430009J09Rik|AA408242|Csn8|Sgn8	COP9 signalosome subunit 8	protein-coding	0.020000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-251	chr10	63978685	63978885	+	0.23757	NA	intron (NM_178678, intron 2 of 2)	intron (NM_178678, intron 2 of 2)	111470	NM_178678	216028	Mm.431318	NM_178678	ENSMUSG00000042846	Lrrtm3	9630044H04Rik	leucine rich repeat transmembrane neuronal 3	protein-coding	0.015000	0.487562	-39(CATGCATTGTGCATG,+,0.00),-39(CATGCATTGTGCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-82	chr1	88752537	88752737	+	0.23757	NA	Intergenic	Intergenic	-2253	NR_040493	78650	Mm.243767	NR_040493	ENSMUSG00000097398	Platr5	2410088K16Rik	pluripotency associated transcript 5	ncRNA	0.015000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-461	chr11	99537459	99537659	+	0.23757	NA	exon (NM_001039666, exon 7 of 7)	exon (NM_001039666, exon 7 of 7)	5661	NM_001317213	406221	Mm.422372	NM_001039666	ENSMUSG00000059169	Krt40	CK-40|K40	keratin 40	protein-coding	0.025000	0.492537			-80(TAATTGTCATGCACAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2185	chr7	24081781	24081981	+	0.23757	NA	promoter-TSS (NM_001289641)	promoter-TSS (NM_001289641)	-16	NM_172483	210135	Mm.32254	NM_172483	ENSMUSG00000057101	Zfp180	2310040I01Rik|AI852378|D130011P11|HHZ168	zinc finger protein 180	protein-coding	0.050000	0.557214			
ePOU_nocontrol_ChIP_peaks_unique-317	chr10	117418215	117418415	+	0.23757	NA	Intergenic	Intergenic	29120	NR_152734	102634600	Mm.399106	NR_152734	ENSMUSG00000112344	Gm32141	-	predicted gene, 32141	ncRNA	0.045000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-1591	chr3	65315857	65316057	+	0.23757	NA	intron (NM_010597, intron 7 of 13)	intron (NM_010597, intron 7 of 13)	-13272	NR_126080	102637797	Mm.446731	NR_126080	ENSMUSG00000104093	A330015K06Rik	-	RIKEN cDNA A330015K06 gene	ncRNA	0.005000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-1135	chr17	74976418	74976618	+	0.23757	NA	Intergenic	Intergenic	-29011	NM_019919	268977	Mm.269747	NM_019919	ENSMUSG00000001870	Ltbp1	9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo	latent transforming growth factor beta binding protein 1	protein-coding	0.020000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-1046	chr17	8311058	8311258	+	0.23757	NA	promoter-TSS (NM_001357890)	promoter-TSS (NM_001357890)	-40	NR_073374	75060	Mm.426530	NR_073374	ENSMUSG00000087478	4930506C21Rik	-	RIKEN cDNA 4930506C21 gene	ncRNA	0.100000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-170	chr1	180778408	180778608	+	0.23757	NA	Intergenic	Intergenic	35097	NM_008210	15078	Mm.138832	NM_008210	ENSMUSG00000060743	H3f3a	EyeLinc14|H3.3A	H3 histone, family 3A	protein-coding	0.045000	0.577114			
ePOU_nocontrol_ChIP_peaks_unique-2610	chr9	119322516	119322716	+	0.23757	NA	promoter-TSS (NM_001359582)	promoter-TSS (NM_001359582)	-189	NR_045693	108737	Mm.293565	NM_133985	ENSMUSG00000036737	Oxsr1	2210022N24Rik|2810422B09Rik|AI462649|AW209236|Osr1|mKIAA1101	oxidative-stress responsive 1	protein-coding	0.060000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-1475	chr2	136695793	136695993	+	0.23757	NA	Intergenic	Intergenic	-17557	NM_001291056	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.015000	0.338308			
ePOU_nocontrol_ChIP_peaks_unique-1895	chr5	20951476	20951676	+	0.23757	NA	exon (NM_001080977, exon 1 of 8)	exon (NM_001080977, exon 1 of 8)	246	NM_001080977	242860	Mm.254286	NM_001080977	ENSMUSG00000039968	Rsbn1l	8430412F05Rik|AI447441|C330002G24Rik	round spermatid basic protein 1-like	protein-coding	0.120000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-507	chr12	5068727	5068927	+	0.23757	NA	Intergenic	L1MEf|LINE|L1	151474	NM_001362349	320817	Mm.210966	NM_001099628	ENSMUSG00000052812	Atad2b	1110014E10Rik|BC032887|C79189|D530031C13Rik	ATPase family, AAA domain containing 2B	protein-coding	0.005000	0.298507			25(GATTTCTCATTTAATT,+,0.00),63(TCTATGTGATTCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1984	chr5	115652909	115653109	+	0.23757	NA	non-coding (NR_151600, exon 1 of 4)	non-coding (NR_151600, exon 1 of 4)	577	NR_151600	75665	Mm.233914	NM_001080808	ENSMUSG00000041609	Bicdl1	2210403N09Rik|BICDR-1|Ccdc64	BICD family like cargo adaptor 1	protein-coding	0.030000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-2545	chr9	66834974	66835174	+	0.23757	NA	promoter-TSS (NM_026674)	promoter-TSS (NM_026674)	-368	NM_026674	68318	Mm.284229	NM_026674	ENSMUSG00000053040	Aph1c	0610008A10Rik|APH-1b|Aph1b	aph1 homolog C, gamma secretase subunit	protein-coding	0.070000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-817	chr14	101640308	101640508	+	0.23757	NA	promoter-TSS (NM_001168592)	promoter-TSS (NM_001168592)	63	NM_001168592	66200	Mm.250474	NM_001033132	ENSMUSG00000075486	Commd6	1110059J08Rik|1700063H17Rik	COMM domain containing 6	protein-coding	0.075000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-2175	chr7	4739823	4740023	+	0.23757	NA	promoter-TSS (NM_001115018)	promoter-TSS (NM_001115018)	-204	NM_001358044	232811	Mm.247844	NM_146177	ENSMUSG00000059851	Kmt5c	BC024816|Suv4-20h2|Suv420h2	lysine methyltransferase 5C	protein-coding	0.045000	0.532338			
ePOU_nocontrol_ChIP_peaks_unique-2134	chr6	108503568	108503768	+	0.23757	NA	intron (NM_010585, intron 53 of 61)	L1ME1|LINE|L1	13925	NR_106121	102465766		NR_106121	ENSMUSG00000105697	Mir7661	mmu-mir-7661	microRNA 7661	ncRNA	0.005000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-1218	chr18	62811659	62811859	+	0.23757	NA	Intergenic	Intergenic	-55412	NR_037693	78449	Mm.262195	NR_037693	ENSMUSG00000041789	2700046A07Rik	A330042I05Rik	RIKEN cDNA 2700046A07 gene	ncRNA	0.005000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-967	chr16	21946985	21947185	+	0.23757	NA	intron (NM_025693, intron 1 of 4)	intron (NM_025693, intron 1 of 4)	467	NM_025693	66664	Mm.46480	NM_025693	ENSMUSG00000022856	Tmem41a	2900010K02Rik|5730578N08Rik	transmembrane protein 41a	protein-coding	0.045000	0.512438			
ePOU_nocontrol_ChIP_peaks_unique-302	chr10	105715031	105715231	+	0.23757	NA	Intergenic	Intergenic	126249	NM_207522	216292	Mm.250875	NM_207522	ENSMUSG00000036009	Mettl25	-	methyltransferase like 25	protein-coding	0.015000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-2252	chr7	88854801	88855001	+	0.23757	NA	Intergenic	Intergenic	424628	NM_028238	72433	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0.000000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-20	chr1	38987680	38987880	+	0.23757	NA	promoter-TSS (NM_026850)	promoter-TSS (NM_026850)	-34	NM_026850	68833	Mm.28121	NM_026850	ENSMUSG00000026078	Pdcl3	1110061A19Rik|C80025|Viaf1	phosducin-like 3	protein-coding	0.070000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-319	chr10	118141635	118141835	+	0.23757	NA	promoter-TSS (NM_148922)	promoter-TSS (NM_148922)	-52	NM_148922	17245	Mm.101191	NM_010785	ENSMUSG00000020212	Mdm1	Arrd2|Mdm-1	transformed mouse 3T3 cell double minute 1	protein-coding	0.115000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-2107	chr6	80839859	80840059	+	0.23757	NA	Intergenic	Intergenic	820316	NM_178731	243499	Mm.483425	NM_178731	ENSMUSG00000052581	Lrrtm4	7530419J18Rik|A230052N11	leucine rich repeat transmembrane neuronal 4	protein-coding	0.000000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-2047	chr6	29517225	29517425	+	0.23757	NA	Intergenic	Intergenic	-9300	NM_012057	27056	Mm.6479	NM_012057	ENSMUSG00000029771	Irf5	AW491843|mirf5	interferon regulatory factor 5	protein-coding	0.025000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-825	chr14	116241554	116241754	+	0.23757	NA	intron (NM_175500, intron 7 of 7)	intron (NM_175500, intron 7 of 7)	-683643	NM_001079844	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.005000	0.368159	-25(AATAAATTATGCATG,+,0.00),-25(AATAAATTATGCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2294	chr7	118705663	118705863	+	0.23757	NA	promoter-TSS (NM_019580)	promoter-TSS (NM_019580)	-25	NM_019580	56209	Mm.273142	NM_019580	ENSMUSG00000033917	Gde1	1200003M13Rik|Mir16|RGS16	glycerophosphodiester phosphodiesterase 1	protein-coding	0.115000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-234	chr10	53414371	53414571	+	0.23757	NA	intron (NR_152767, intron 1 of 2)	intron (NR_152767, intron 1 of 2)	4589	NR_152767	102640074	Mm.412957	NR_152767		Gm36229	-	predicted gene, 36229	ncRNA	0.010000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-1999	chr5	130144693	130144893	+	0.23757	NA	promoter-TSS (NM_172509)	promoter-TSS (NM_172509)	-90	NM_172509	212919	Mm.55812	NM_172509	ENSMUSG00000034110	Kctd7	4932409E18|9430010P06Rik	potassium channel tetramerisation domain containing 7	protein-coding	0.060000	0.597015			
ePOU_nocontrol_ChIP_peaks_unique-316	chr10	117349468	117349668	+	0.23757	NA	intron (NM_001310609, intron 9 of 9)	intron (NM_001310609, intron 9 of 9)	27405	NM_001310609	432508	Mm.478881	NM_001013391	ENSMUSG00000055531	Cpsf6	4733401N12Rik|AI256641|CFIM|CFIM68|HPBRII-4|HPBRII-7	cleavage and polyadenylation specific factor 6	protein-coding	0.005000	0.343284			-86(AATTTGTGATGTAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-190	chr10	4432046	4432246	+	0.23757	NA	promoter-TSS (NM_024261)	promoter-TSS (NM_024261)	242	NM_025343	66084	Mm.153111	NM_025343	ENSMUSG00000019763	Rmnd1	0610042C05Rik|AA408137|AI462664|AW536662	required for meiotic nuclear division 1 homolog	protein-coding	0.040000	0.582090			
ePOU_nocontrol_ChIP_peaks_unique-1922	chr5	36796910	36797110	+	0.23757	NA	promoter-TSS (NM_026242)	promoter-TSS (NM_026242)	-256	NM_026242	67568	Mm.332336	NM_026242	ENSMUSG00000055302	Mrfap1	9130413I22Rik|AL022827|Pam14	Morf4 family associated protein 1	protein-coding	0.045000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-1168	chr18	20963509	20963709	+	0.23757	NA	intron (NM_001364973, intron 1 of 5)	intron (NM_001364973, intron 1 of 5)	2245	NM_001364973	67664	Mm.45980	NM_026301	ENSMUSG00000033107	Rnf125	4930553F04Rik|C730049O14Rik	ring finger protein 125	protein-coding	0.005000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-56	chr1	66161139	66161339	+	0.23757	NA	Intergenic	Intergenic	-14090	NM_008632	17756	Mm.256966	NM_008632	ENSMUSG00000015222	Map2	G1-397-34|MAP-2|Mtap-2|Mtap2|repro4	microtubule-associated protein 2	protein-coding	0.005000	0.323383			
ePOU_nocontrol_ChIP_peaks_unique-2522	chr9	52278254	52278454	+	0.23757	NA	Intergenic	Intergenic	-109948	NM_001162921	244871	Mm.295686	NM_001162921	ENSMUSG00000035164	Zc3h12c	A230108E06|C230027N18Rik|mKIAA1726	zinc finger CCCH type containing 12C	protein-coding	0.000000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-2022	chr5	147848020	147848220	+	0.23757	NA	Intergenic	Intergenic	-12508	NM_025624	66537	Mm.332855	NM_025624	ENSMUSG00000029649	Pomp	2510048O06Rik|Ump1	proteasome maturation protein	protein-coding	0.020000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-2469	chr8	124897693	124897893	+	0.23757	NA	promoter-TSS (NM_001111141)	promoter-TSS (NM_001111141)	-88	NM_198103	102058	Mm.347360	NM_198103	ENSMUSG00000074030	Exoc8	AI414418|EXO84|Exo84p|R74783|SEC84	exocyst complex component 8	protein-coding	0.145000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-2515	chr9	46456396	46456596	+	0.23757	NA	Intergenic	Intergenic	-136510	NM_183104	74361	Mm.159169	NM_183104	ENSMUSG00000056617	4931429L15Rik	-	RIKEN cDNA 4931429L15 gene	protein-coding	0.005000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-385	chr11	51263283	51263483	+	0.23757	NA	promoter-TSS (NM_177567)	promoter-TSS (NM_177567)	269	NM_001304744	12750	Mm.239354	NM_007714	ENSMUSG00000020385	Clk4	AI987988|C85119	CDC like kinase 4	protein-coding	0.135000	0.736318			
ePOU_nocontrol_ChIP_peaks_unique-1189	chr18	36242263	36242463	+	0.23757	NA	Intergenic	Intergenic	-38742	NM_008989	19290	Mm.44643	NM_008989	ENSMUSG00000043991	Pura	6330411E07Rik|CAGER-1|Pur-alpha|ssCRE-BP	purine rich element binding protein A	protein-coding	0.015000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-2029	chr6	8777478	8777678	+	0.23757	NA	intron (NM_010492, intron 1 of 13)	intron (NM_010492, intron 1 of 13)	906	NM_010492	15893	Mm.275683	NM_010492	ENSMUSG00000062995	Ica1	69kDa|ICA69	islet cell autoantigen 1	protein-coding	0.045000	0.557214			
ePOU_nocontrol_ChIP_peaks_unique-2045	chr6	29064307	29064507	+	0.23757	NA	intron (NM_008493, intron 1 of 2)	L1MA4|LINE|L1	4186	NM_008493	16846	Mm.277072	NM_008493	ENSMUSG00000059201	Lep	ob|obese	leptin	protein-coding	0.005000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-1320	chr19	55455617	55455817	+	0.23757	NA	intron (NM_001360431, intron 6 of 8)	intron (NM_001360431, intron 6 of 8)	139660	NM_001360432	53611	Mm.258637	NM_016862	ENSMUSG00000024983	Vti1a	1110014F16Rik|1110018K19Rik|4921537J05Rik|MVti1|MVti1a|Vti1|Vti1-rp2	vesicle transport through interaction with t-SNAREs 1A	protein-coding	0.015000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-1378	chr2	51600486	51600686	+	0.23757	NA	Intergenic	Intergenic	-26925	NM_199158	387511	Mm.377918	NM_199158	ENSMUSG00000056115	Tas2r134	T2R134|Tas2r34	taste receptor, type 2, member 134	protein-coding	0.005000	0.373134			
Oct4_nocontrol_ChIP_peaks_unique-147	chr13	49420591	49420791	+	0.23757	NA	promoter-TSS (NM_001276399)	promoter-TSS (NM_001276399)	-532	NM_199056	75678	Mm.390586	NM_199056	ENSMUSG00000021385	Ippk	1810043M15Rik|InsP6	inositol 1,3,4,5,6-pentakisphosphate 2-kinase	protein-coding	0.010000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-865	chr15	42516473	42516673	+	0.23757	NA	intron (NM_001286062, intron 2 of 8)	intron (NM_001286062, intron 2 of 8)	160404	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.000000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-2340	chr8	4779512	4779712	+	0.23757	NA	promoter-TSS (NM_011369)	promoter-TSS (NM_011369)	-45	NM_011369	20419	Mm.37801	NM_011369	ENSMUSG00000022322	Shcbp1	mPAL	Shc SH2-domain binding protein 1	protein-coding	0.055000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-88	chr1	93825476	93825676	+	0.23757	NA	exon (NM_001310767, exon 1 of 10)	exon (NM_001310767, exon 1 of 10)	336	NM_178882	98314	Mm.383401	NM_178882	ENSMUSG00000073609	D2hgdh	AA408776|AA408778|AI325464	D-2-hydroxyglutarate dehydrogenase	protein-coding	0.065000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-490	chr11	117608364	117608564	+	0.23757	NA	Intergenic	Intergenic	-2783	NR_015489	78403	Mm.212543	NR_015489		2900041M22Rik	-	RIKEN cDNA 2900041M22 gene	ncRNA	0.030000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-1126	chr17	70755265	70755465	+	0.23757	NA	intron (NM_001347414, intron 5 of 10)	intron (NM_001347414, intron 5 of 10)	91412	NM_001164077	21815	Mm.101034	NM_009372	ENSMUSG00000047407	Tgif1	AA959811|AI462167|Tgif	TGFB-induced factor homeobox 1	protein-coding	0.030000	0.522388			
merged_common-764	chr7	133100277	133100477	+	0.23757	NA	intron (NM_009980, intron 1 of 10)	intron (NM_009980, intron 1 of 10)	-18517	NM_001347623	13017	Mm.246240	NM_009980	ENSMUSG00000030970	Ctbp2	AA407280|D7Ertd45e|Gtrgeo6|Ribeye	C-terminal binding protein 2	protein-coding	0.010000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-180	chr1	187779866	187780066	+	0.23757	NA	intron (NM_001357535, intron 1 of 7)	intron (NM_001357535, intron 1 of 7)	127725	NM_001357535	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.025000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-2312	chr7	127254200	127254400	+	0.23757	NA	exon (NM_177362, exon 3 of 3)	exon (NM_177362, exon 3 of 3)	6367	NM_023203	66422	Mm.29898	NM_023203	ENSMUSG00000042462	Dctpp1	2410015N17Rik|AI854235|RS21-C6	dCTP pyrophosphatase 1	protein-coding	0.185000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-1737	chr4	33247936	33248136	+	0.23757	NA	exon (NM_001033225, exon 1 of 2)	exon (NM_001033225, exon 1 of 2)	751	NM_001033225	108767	Mm.27769	NM_001033225	ENSMUSG00000040128	Pnrc1	5730463C12Rik|B4-2|PRR2|Prol2	proline-rich nuclear receptor coactivator 1	protein-coding	0.100000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-2333	chr7	145038750	145038950	+	0.23757	NA	Intergenic	ORR1C2|LTR|ERVL-MaLR	-98925	NM_007631	12443	Mm.273049	NM_007631	ENSMUSG00000070348	Ccnd1	AI327039|CycD1|Cyl-1|PRAD1|bcl-1|cD1	cyclin D1	protein-coding	0.005000	0.442786			83(CTATTCTTATTCAAAC,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1595	chr3	66537420	66537620	+	0.23757	NA	Intergenic	Intergenic	-240683	NM_145820	72789	Mm.443526	NM_028357	ENSMUSG00000027831	Veph1	2810471M23Rik|Veph	ventricular zone expressed PH domain-containing 1	protein-coding	0.000000	0.303483			
ePOU_nocontrol_ChIP_peaks_unique-1208	chr18	56572999	56573199	+	0.23757	NA	promoter-TSS (NM_001127338)	promoter-TSS (NM_001127338)	-160	NM_001127338	110695	Mm.30250	NM_138600	ENSMUSG00000053644	Aldh7a1	Atq1|D18Wsu181e	aldehyde dehydrogenase family 7, member A1	protein-coding	0.135000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-2372	chr8	44457420	44457620	+	0.23757	NA	Intergenic	Intergenic	-492688	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.000000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-1844	chr4	126886575	126886775	+	0.23757	NA	intron (NM_001357201, intron 21 of 27)	intron (NM_001357201, intron 21 of 27)	81248	NM_001114399	67785	Mm.165401	NM_001114399	ENSMUSG00000042446	Zmym4	6330503C17Rik|AI480785|AW493829|CDIR|D630001M21|MYM|Zfp262|Znf262|mKIAA0425	zinc finger, MYM-type 4	protein-coding	0.005000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-136	chr1	160115412	160115612	+	0.23757	NA	intron (NM_177839, intron 13 of 21)	intron (NM_177839, intron 13 of 21)	-37527	NR_038031	75255	Mm.414845	NR_038030	ENSMUSG00000026729	4930562F07Rik	-	RIKEN cDNA 4930562F07 gene	ncRNA	0.015000	0.318408			62(TCTTACTCATGAAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-880	chr15	58464204	58464404	+	0.23757	NA	Intergenic	RLTR13B1|LTR|ERVK	-45744	NM_001370912	631797		NM_001370912	ENSMUSG00000037106	Fer1l6	EG631797	fer-1-like 6 (C. elegans)	protein-coding	0.010000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-2259	chr7	91153938	91154138	+	0.23757	NA	intron (NM_011807, intron 1 of 22)	intron (NM_011807, intron 1 of 22)	63252	NM_011807	23859	Mm.147213	NM_011807	ENSMUSG00000052572	Dlg2	A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93	discs large MAGUK scaffold protein 2	protein-coding	0.000000	0.328358			-66(CTTTACAGGACAAATA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-362	chr11	31970420	31970620	+	0.23757	NA	intron (NM_026262, intron 1 of 4)	intron (NM_026262, intron 1 of 4)	4887	NM_026262	67592	Mm.78654	NM_026262	ENSMUSG00000020299	4930524B15Rik	-	RIKEN cDNA 4930524B15 gene	protein-coding	0.000000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-1390	chr2	69001799	69001999	+	0.23757	NA	intron (NM_172856, intron 3 of 9)	intron (NM_172856, intron 3 of 9)	-133901	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.015000	0.323383			-88(AATTTGCCTTGTAAAT,+,0.00),-63(AACTTGTTATTCAAAT,+,0.00),34(ATATAAATGACAGTAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-727	chr13	107661511	107661711	+	0.23757	NA	Intergenic	Intergenic	-25786	NR_045900	72257	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.010000	0.472637			-1(ATTTGAATGATAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1305	chr19	44049456	44049656	+	0.23757	NA	intron (NM_145502, intron 6 of 10)	intron (NM_145502, intron 6 of 10)	20130	NM_145502	226144	Mm.279865	NM_145502	ENSMUSG00000025198	Erlin1	2810439N09Rik|C80197|Keo4|Spfh1	ER lipid raft associated 1	protein-coding	0.010000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-1115	chr17	57157510	57157710	+	0.23757	NA	Intergenic	ORR1B1-int|LTR|ERVL-MaLR	-7833	NM_011617	21948	Mm.42228	NM_011617	ENSMUSG00000019489	Cd70	CD27LG|Cd27l|Tnfsf7|Tnlg8a	CD70 antigen	protein-coding	0.005000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-2424	chr8	83875371	83875571	+	0.23757	NA	Intergenic	Intergenic	-24627	NM_181039	330814	Mm.260733	NM_181039	ENSMUSG00000013033	Adgrl1	2900070I05Rik|AI182398|CLIBA|Lec2|Lphn1|mKIAA0821	adhesion G protein-coupled receptor L1	protein-coding	0.060000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-1022	chr16	70749467	70749667	+	0.23757	NA	Intergenic	ORR1C2|LTR|ERVL-MaLR	133142	NR_040474	52645	Mm.188475	NR_040474	ENSMUSG00000116792	D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.005000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-1579	chr3	54107147	54107347	+	0.23757	NA	Intergenic	MER2|DNA|TcMar-Tigger	-48810	NM_016984	22066	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.005000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-856	chr15	35893611	35893811	+	0.23757	NA	intron (NM_177151, intron 54 of 61)	intron (NM_177151, intron 54 of 61)	44535	NM_053071	12864	Mm.548	NM_053071	ENSMUSG00000014313	Cox6c	-	cytochrome c oxidase subunit 6C	protein-coding	0.005000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-427	chr11	74649500	74649700	+	0.23757	NA	promoter-TSS (NM_001081158)	promoter-TSS (NM_001081158)	96	NM_001368711	74148	Mm.214574	NM_001081158	ENSMUSG00000020741	Cluh	1300001I01Rik|Kiaa0664|mKIAA0664	clustered mitochondria (cluA/CLU1) homolog	protein-coding	0.165000	0.766169			
ePOU_nocontrol_ChIP_peaks_unique-342	chr11	5248492	5248692	+	0.23757	NA	intron (NM_032396, intron 1 of 8)	intron (NM_032396, intron 1 of 8)	13018	NM_032396	84035	Mm.209989	NM_032396	ENSMUSG00000020393	Kremen1	AV002070|Kremen|Krm1	kringle containing transmembrane protein 1	protein-coding	0.015000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-1220	chr18	65800210	65800410	+	0.23757	NA	promoter-TSS (NM_025468)	promoter-TSS (NM_025468)	-268	NM_025468	66286	Mm.27800	NM_025468	ENSMUSG00000024516	Sec11c	1810029G24Rik|Sec11l3	SEC11 homolog C, signal peptidase complex subunit	protein-coding	0.040000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-1580	chr3	54152348	54152548	+	0.23757	NA	Intergenic	Intergenic	-3609	NM_016984	22066	Mm.10100	NM_016984	ENSMUSG00000027748	Trpc4	CCE1|STRPC4|Trp4|Trrp4	transient receptor potential cation channel, subfamily C, member 4	protein-coding	0.005000	0.422886		24(AATAAATATGTATA,+,0.00),24(AATAAATATGTATA,-,0.00)	43(GCATTCATATGTTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1119	chr17	60866545	60866745	+	0.23757	NA	Intergenic	Intergenic	-1853323	NM_001368393	67993	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.010000	0.288557			-48(ATTTCAATTACAATAA,-,0.00),-1(TCTTTTTCTTGAAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1211	chr18	58260684	58260884	+	0.23757	NA	Intergenic	L1M2|LINE|L1	-50858	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.010000	0.398010			55(ATTAGCATACGAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1373	chr2	47365743	47365943	+	0.23757	NA	Intergenic	L1_Mur3|LINE|L1	-1448266	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.000000	0.268657			
ePOU_nocontrol_ChIP_peaks_unique-2316	chr7	128611040	128611240	+	0.23757	NA	promoter-TSS (NM_178641)	promoter-TSS (NM_178641)	-225	NM_178641	101490	Mm.490344	NM_178641	ENSMUSG00000042105	Inpp5f	5830435P03Rik|AI115354|AW561896|SAC2|cI-27|hSAC2|mKIAA0966	inositol polyphosphate-5-phosphatase F	protein-coding	0.050000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-2455	chr8	110919733	110919933	+	0.23757	NA	promoter-TSS (NM_009179)	promoter-TSS (NM_009179)	-32	NM_009179	20444	Mm.200388	NM_009179	ENSMUSG00000031749	St3gal2	AI429591|AW822065|ST3GalII|Siat5	ST3 beta-galactoside alpha-2,3-sialyltransferase 2	protein-coding	0.040000	0.701493			
Oct4_nocontrol_ChIP_peaks_unique-330	chr2	160253743	160253943	+	0.23757	NA	Intergenic	L1ME2|LINE|L1	73651	NM_001033411	329554	Mm.291144	NM_001033411	ENSMUSG00000074623	Gm826	-	predicted gene 826	protein-coding	0.020000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-2297	chr7	120157359	120157559	+	0.23757	NA	intron (NR_130979, intron 2 of 2)	intron (NR_130979, intron 2 of 2)	1344	NR_130979	75073	Mm.399233	NR_130979	ENSMUSG00000109414	4930505K13Rik	Gm44569	RIKEN cDNA 4930505K13 gene	ncRNA	0.010000	0.383085			-87(GTTTGCAGAAGAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2038	chr6	15767409	15767609	+	0.23757	NA	intron (NM_175088, intron 3 of 4)	intron (NM_175088, intron 3 of 4)	46848	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.010000	0.328358	4(AATGAATAATTCAAA,+,0.00),4(AATGAATAATTCAAA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1886	chr5	5559363	5559563	+	0.23757	NA	promoter-TSS (NM_153116)	promoter-TSS (NM_153116)	78	NM_001357032	207704	Mm.323984	NM_153116	ENSMUSG00000040464	Gtpbp10	4930545J22Rik|BC034507	GTP-binding protein 10 (putative)	protein-coding	0.100000	0.621891			
Oct4_nocontrol_ChIP_peaks_unique-399	chr4	132767921	132768121	+	0.23757	NA	promoter-TSS (NM_011284)	promoter-TSS (NM_011284)	-339	NM_011284	19891	Mm.2870	NM_011284	ENSMUSG00000028884	Rpa2	AA409079|AI325195|AU020965|RPA34|Rf-A2	replication protein A2	protein-coding	0.040000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-2337	chr8	4238640	4238840	+	0.23757	NA	promoter-TSS (NM_001291777)	promoter-TSS (NM_001291777)	0	NM_001291777	26400	Mm.3906	NM_011944	ENSMUSG00000002948	Map2k7	5930412N11Rik|JNKK 2|Jnkk2|MAPKK 7|MEK 7|Mapkk7|Mek7|Mkk7|Prkmk7|sek2	mitogen-activated protein kinase kinase 7	protein-coding	0.115000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-264	chr10	76961880	76962080	+	0.23757	NA	promoter-TSS (NM_021568)	promoter-TSS (NM_021568)	-33	NM_001347216	59093	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	0.110000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-753	chr14	21011602	21011802	+	0.23757	NA	intron (NM_009502, intron 13 of 20)	intron (NM_009502, intron 13 of 20)	40740	NM_018829	55946	Mm.376269	NM_018829	ENSMUSG00000021824	Ap3m1	1200013D09Rik|C78982|R75378	adaptor-related protein complex 3, mu 1 subunit	protein-coding	0.000000	0.353234			29(TTTTTATTATGTAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2544	chr9	66144457	66144657	+	0.23757	NA	Intergenic	Intergenic	-13669	NM_010019	13143	Mm.304472	NM_010019	ENSMUSG00000032380	Dapk2	-	death-associated protein kinase 2	protein-coding	0.005000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-2284	chr7	114562705	114562905	+	0.23757	NA	non-coding (NR_110408, exon 1 of 5)	non-coding (NR_110408, exon 1 of 5)	167	NR_110407	244209	Mm.108037	NM_177382	ENSMUSG00000030670	Cyp2r1	-	cytochrome P450, family 2, subfamily r, polypeptide 1	protein-coding	0.085000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1916	chr5	33936306	33936506	+	0.23757	NA	promoter-TSS (NM_011914)	promoter-TSS (NM_011914)	-135	NM_011914	24116	Mm.332320	NM_011914	ENSMUSG00000029111	Nelfa	Whsc2|Whsc2h	negative elongation factor complex member A, Whsc2	protein-coding	0.105000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-587	chr12	84772936	84773136	+	0.23757	NA	promoter-TSS (NM_028863)	promoter-TSS (NM_028863)	76	NM_023409	67963	Mm.282556	NM_023409	ENSMUSG00000021242	Npc2	2700012J19Rik|AA408070|AU045843|HE1	NPC intracellular cholesterol transporter 2	protein-coding	0.095000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-1064	chr17	15716052	15716252	+	0.23757	NA	intron (NM_007690, intron 2 of 35)	intron (NM_007690, intron 2 of 35)	11185	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.010000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-1823	chr4	114443923	114444123	+	0.23757	NA	intron (NM_001085549, intron 2 of 6)	L1ME1|LINE|L1	37299	NM_001085549	666048	Mm.331779	NM_001085549	ENSMUSG00000070867	Trabd2b	Gm12824|Hkat	TraB domain containing 2B	protein-coding	0.015000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-659	chr13	42999913	43000113	+	0.23757	NA	intron (NM_001005740, intron 2 of 12)	intron (NM_001005740, intron 2 of 12)	-122826	NM_001005748	218194	Mm.160124	NM_198419	ENSMUSG00000054728	Phactr1	9630030F18Rik|Rpel1	phosphatase and actin regulator 1	protein-coding	0.010000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-1881	chr4	156235964	156236164	+	0.23757	NA	promoter-TSS (NM_021303)	promoter-TSS (NM_021303)	49	NM_001369270	57741	Mm.423051	NM_021303	ENSMUSG00000095567	Noc2l	AA410003|AF155546|NIR	NOC2 like nucleolar associated transcriptional repressor	protein-coding	0.150000	0.766169			
ePOU_nocontrol_ChIP_peaks_unique-474	chr11	103966622	103966822	+	0.23757	NA	promoter-TSS (NM_007477)	promoter-TSS (NM_007477)	-3	NM_001304574	11841	Mm.5061	NM_007477	ENSMUSG00000062421	Arf2	-	ADP-ribosylation factor 2	protein-coding	0.080000	0.542289			-84(TTTTTGTCATTCAAGT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1741	chr4	35225950	35226150	+	0.23757	NA	promoter-TSS (NM_001081343)	promoter-TSS (NM_001081343)	-214	NM_028466	73205	Mm.331544	NM_028466	ENSMUSG00000028300	C9orf72	3110043O21Rik|AI840585	C9orf72, member of C9orf72-SMCR8 complex	protein-coding	0.045000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-755	chr14	24253741	24253941	+	0.23757	NA	Intergenic	Intergenic	-7921	NM_001163513	71228	Mm.68971	NM_027726	ENSMUSG00000021782	Dlg5	4933429D20Rik|T25557|mKIAA0583	discs large MAGUK scaffold protein 5	protein-coding	0.010000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-1538	chr3	14641801	14642001	+	0.23757	NA	intron (NM_024495, intron 1 of 6)	intron (NM_024495, intron 1 of 6)	174	NM_024495	71934	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	0.065000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-2304	chr7	125581550	125581750	+	0.23757	NA	Intergenic	Intergenic	-21779	NM_021887	60504	Mm.155643	NM_021887	ENSMUSG00000030745	Il21r	NILR	interleukin 21 receptor	protein-coding	0.025000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-1430	chr2	103993145	103993345	+	0.23757	NA	intron (NM_175161, intron 4 of 4)	intron (NM_175161, intron 4 of 4)	22958	NM_008505	16909	Mm.29266	NM_008505	ENSMUSG00000032698	Lmo2	Rbtn-2|Rbtn2|Rhom-2|Ttg2	LIM domain only 2	protein-coding	0.015000	0.378109			60(ATTTTTTTTTTTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2514	chr9	45906447	45906647	+	0.23757	NA	promoter-TSS (NM_008794)	promoter-TSS (NM_008794)	-22	NR_104055	18554	Mm.3255	NM_008794	ENSMUSG00000035382	Pcsk7	AA959856|PC7|SPC7	proprotein convertase subtilisin/kexin type 7	protein-coding	0.135000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-2579	chr9	99568604	99568804	+	0.23757	NA	5' UTR (NM_028768, exon 1 of 22)	5' UTR (NM_028768, exon 1 of 22)	195	NM_028768	74125	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	0.095000	0.681592			
Oct4_nocontrol_ChIP_peaks_unique-287	chr19	52199941	52200141	+	0.23757	NA	Intergenic	Intergenic	-64256	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0.005000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-1722	chr4	13207134	13207334	+	0.23757	NA	Intergenic	Intergenic	300397	NM_173746	208820	Mm.12057	NM_173746	ENSMUSG00000055963	Triqk	C130086A10|Gm11818	triple QxxK/R motif containing	protein-coding	0.000000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-705	chr13	95270594	95270794	+	0.23757	NA	Intergenic	L1M5|LINE|L1	-20358	NM_001346782	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding	0.005000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-99	chr1	126647223	126647423	+	0.23757	NA	intron (NM_001081756, intron 2 of 16)	intron (NM_001081756, intron 2 of 16)	-154396	NM_172484	210356	Mm.377234	NM_172484	ENSMUSG00000049690	Nckap5	8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5	NCK-associated protein 5	protein-coding	0.000000	0.313433			
ePOU_nocontrol_ChIP_peaks_unique-1603	chr3	69889769	69889969	+	0.23757	NA	Intergenic	Intergenic	-29975	NM_001164210	66183	Mm.45481	NM_133675	ENSMUSG00000043461	Sptssb	1110032A04Rik|ADMP|Sssptb	serine palmitoyltransferase, small subunit B	protein-coding	0.000000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-1014	chr16	53165936	53166136	+	0.23757	NA	Intergenic	ORR1F|LTR|ERVL-MaLR	-350292	NR_040495	73820	Mm.60493	NR_040495	ENSMUSG00000116611	4930404A05Rik	-	RIKEN cDNA 4930404A05 gene	ncRNA	0.000000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-1160	chr18	7652518	7652718	+	0.23757	NA	Intergenic	Intergenic	-25755	NM_001081287	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.005000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-2518	chr9	50687473	50687673	+	0.23757	NA	intron (NM_178118, intron 9 of 19)	intron (NM_178118, intron 9 of 19)	-27793	NM_145614	235339	Mm.285076	NM_145614	ENSMUSG00000000168	Dlat	6332404G05Rik|DLTA|PDC-E2	dihydrolipoamide S-acetyltransferase (E2 component of pyruvate dehydrogenase complex)	protein-coding	0.015000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-1297	chr19	36669237	36669437	+	0.23757	NA	intron (NR_033510, intron 2 of 4)	intron (NR_033510, intron 2 of 4)	20142	NR_033510	668215	Mm.394223	NR_033510	ENSMUSG00000087579	Hectd2os	1500017E21Rik	Hectd2, opposite strand	ncRNA	0.000000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-1325	chr2	3332376	3332576	+	0.23757	NA	intron (NM_001013376, intron 1 of 1)	CpG	152	NM_001013376	227522	Mm.293948	NM_001013376	ENSMUSG00000049950	Rpp38	C330006A15Rik	ribonuclease P/MRP 38 subunit	protein-coding	0.105000	0.686567			
ePOU_nocontrol_ChIP_peaks_unique-1767	chr4	62502101	62502301	+	0.23757	NA	promoter-TSS (NM_024257)	promoter-TSS (NM_024257)	-1	NM_024257	72748	Mm.41506	NM_024257	ENSMUSG00000038422	Hdhd3	2810435D12Rik	haloacid dehalogenase-like hydrolase domain containing 3	protein-coding	0.090000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1101	chr17	42315909	42316109	+	0.23757	NA	promoter-TSS (NM_028474)	promoter-TSS (NM_028474)	62	NM_028474	627626	Mm.390999	NM_028474	ENSMUSG00000042256	Ptchd4	3110082D06Rik|Gm321	patched domain containing 4	protein-coding	0.025000	0.532338			37(CTTAAAAAGAGAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2267	chr7	99381126	99381326	+	0.23757	NA	promoter-TSS (NM_001362166)	promoter-TSS (NM_001362166)	-292	NM_201352	233552	Mm.286317	NM_201352	ENSMUSG00000035314	Gdpd5	BC024955|Gde2	glycerophosphodiester phosphodiesterase domain containing 5	protein-coding	0.050000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-1318	chr19	54731769	54731969	+	0.23757	NA	Intergenic	Intergenic	367608	NM_008149	14732	Mm.210196	NM_008149	ENSMUSG00000024978	Gpam	GPAT|GPAT-1|GPAT1|P90	glycerol-3-phosphate acyltransferase, mitochondrial	protein-coding	0.030000	0.437811	45(CATAAATAAAGCATT,+,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-231	chr10	41303081	41303281	+	0.23757	NA	promoter-TSS (NM_001370813)	promoter-TSS (NM_001370813)	60	NM_133999	103199	Mm.277242	NM_133999	ENSMUSG00000038417	Fig4	A530089I17Rik|AI326867|Sac3	FIG4 phosphoinositide 5-phosphatase	protein-coding	0.070000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-756	chr14	27039018	27039218	+	0.23757	NA	exon (NM_134437, exon 1 of 13)	exon (NM_134437, exon 1 of 13)	117	NM_134437	171463	Mm.206726	NM_027265	ENSMUSG00000040717	Il17rd	2810004A10Rik|AI428510|Sef|Sef-S	interleukin 17 receptor D	protein-coding	0.115000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-469	chr11	102284673	102284873	+	0.23757	NA	promoter-TSS (NM_001302505)	promoter-TSS (NM_001302505)	-178	NM_001302505	72053	Mm.101274	NM_028076	ENSMUSG00000034757	Tmub2	2010008E23Rik	transmembrane and ubiquitin-like domain containing 2	protein-coding	0.070000	0.597015			
ePOU_nocontrol_ChIP_peaks_unique-1966	chr5	103473762	103473962	+	0.23757	NA	intron (NM_011204, intron 2 of 47)	intron (NM_011204, intron 2 of 47)	48670	NM_011204	19249	Mm.3414	NM_011204	ENSMUSG00000034573	Ptpn13	AI324989|PTP-BL|PTPL1|Ptpri|RIP	protein tyrosine phosphatase, non-receptor type 13	protein-coding	0.010000	0.343284			71(TAAATGTCATGTATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-73	chr1	84433102	84433302	+	0.23757	NA	intron (NM_152915, intron 8 of 12)	intron (NM_152915, intron 8 of 12)	-148557	NM_001003948	98496	Mm.187470	NM_001003948	ENSMUSG00000045658	Pid1	5033414K04Rik|NYGGF4|P-CLI1	phosphotyrosine interaction domain containing 1	protein-coding	0.005000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-1695	chr3	133422263	133422463	+	0.23757	NA	Intergenic	L1_Mur3|LINE|L1	112253	NM_146141	74776	Mm.210305	NM_146141	ENSMUSG00000028013	Ppa2	1110013G13Rik|Sid6306	pyrophosphatase (inorganic) 2	protein-coding	0.005000	0.323383			-19(CTTTTGTTAAGCAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2064	chr6	39592396	39592596	+	0.23757	NA	promoter-TSS (NM_026612)	promoter-TSS (NM_026612)	-69	NM_001358797	68198	Mm.29415	NM_026612	ENSMUSG00000002416	Ndufb2	1810011O01Rik|8kDa|AGGG|AI325567|CI-AGGG	NADH:ubiquinone oxidoreductase subunit B2	protein-coding	0.065000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-1332	chr2	9985945	9986145	+	0.23757	NA	intron (NM_027748, intron 2 of 6)	intron (NM_027748, intron 2 of 6)	62564	NM_027748	209361	Mm.86343	NM_027748	ENSMUSG00000025782	Taf3	140kDa|4933439M23Rik|AW539625|TAF140|TAFII-140|TAFII140|mTAFII140	TATA-box binding protein associated factor 3	protein-coding	0.015000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-536	chr12	41898504	41898704	+	0.23757	NA	intron (NM_053122, intron 6 of 6)	intron (NM_053122, intron 6 of 6)	-412547	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.000000	0.323383		18(GTTGCATATGCATA,+,0.00),18(GTTGCATATGCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-462	chr11	99945555	99945755	+	0.23757	NA	Intergenic	L1MA4|LINE|L1	-2769	NM_001085527	435286		NM_001085527	ENSMUSG00000078255	Krtap9-5	-	keratin associated protein 9-5	protein-coding	0.000000	0.293532	-98(TGTGCATTATTCAGT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-649	chr13	32802021	32802221	+	0.23757	NA	promoter-TSS (NM_030215)	promoter-TSS (NM_030215)	91	NM_030215	78903	Mm.286680	NM_030215	ENSMUSG00000021400	Wrnip1	4833444L21Rik|WHIP|Wrnip	Werner helicase interacting protein 1	protein-coding	0.150000	0.751244			
Oct4_nocontrol_ChIP_peaks_unique-516	chr8	91282663	91282863	+	0.23757	NA	intron (NM_173431, intron 9 of 25)	intron (NM_173431, intron 9 of 25)	30459	NM_173431	244585	Mm.324592	NM_173431	ENSMUSG00000033282	Rpgrip1l	1700047E16Rik|4931437C01|Ftm|Nphp8	Rpgrip1-like	protein-coding	0.010000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-247	chr10	62651216	62651416	+	0.23757	NA	promoter-TSS (NM_001358819)	promoter-TSS (NM_001358819)	-98	NM_053183	94213	Mm.114116	NM_053183	ENSMUSG00000020076	Ddx50	4933429B04Rik|8430408E17Rik|GU2|RH-II	DEAD (Asp-Glu-Ala-Asp) box polypeptide 50	protein-coding	0.080000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-729	chr13	109343599	109343799	+	0.23757	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	18955	NR_030644	100124489		NR_030644	ENSMUSG00000076946	Mir582	Mirn582|mir-582|mmu-mir-582	microRNA 582	ncRNA	0.005000	0.417910			-57(ATTTACAAAGCAAATG,-,0.00),-5(TGTTTCTCTTTCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-501	chr11	121706716	121706916	+	0.23757	NA	intron (NM_144797, intron 1 of 3)	intron (NM_144797, intron 1 of 3)	4389	NM_144797	210029	Mm.153566	NM_144797	ENSMUSG00000039208	Metrnl	9430048M07Rik|BC019776	meteorin, glial cell differentiation regulator-like	protein-coding	0.020000	0.422886			-48(TTTTGCATAAAAATCC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-263	chr10	76823259	76823459	+	0.23757	NA	promoter-TSS (NR_152849)	promoter-TSS (NR_152849)	-547	NR_152849	59093	Mm.272803	NM_021568	ENSMUSG00000001120	Pcbp3	AlphaCP-3	poly(rC) binding protein 3	protein-coding	0.005000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-2318	chr7	132824588	132824788	+	0.23757	NA	Intergenic	(TC)n|Simple_repeat|Simple_repeat	-11492	NM_212473	77938	Mm.225649	NM_175268	ENSMUSG00000030956	Fam53b	A930008G19Rik|mKIAA0140	family with sequence similarity 53, member B	protein-coding	0.000000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-515	chr12	26415061	26415261	+	0.23757	NA	promoter-TSS (NR_105856)	promoter-TSS (NR_105856)	101	NM_001081977	108089	Mm.214932	NM_080563	ENSMUSG00000020642	Rnf144a	Rnf144|UIP4|Ubce7ip4	ring finger protein 144A	protein-coding	0.150000	0.771144			
ePOU_nocontrol_ChIP_peaks_unique-165	chr1	179935312	179935512	+	0.23757	NA	Intergenic	Intergenic	-25348	NM_001359541	226751	Mm.259655	NM_001033285	ENSMUSG00000026490	Cdc42bpa	A930014J19Rik|DMPK-like	CDC42 binding protein kinase alpha	protein-coding	0.010000	0.373134			-14(ATTTGAATGAAACTGC,-,0.00),78(CAATTGTTATGTTGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2458	chr8	112094768	112094968	+	0.23757	NA	Intergenic	LTR37A|LTR|ERV1	83509	NM_020584	57321	Mm.213064	NM_020584	ENSMUSG00000033430	Terf2ip	Rap1	telomeric repeat binding factor 2, interacting protein	protein-coding	0.020000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-2508	chr9	39022152	39022352	+	0.23757	NA	Intergenic	Intergenic	-2713	NM_146747	258742	Mm.271535	NM_146747	ENSMUSG00000058820	Olfr146	M15|MOR171-10	olfactory receptor 146	protein-coding	0.005000	0.328358			
ePOU_nocontrol_ChIP_peaks_unique-1481	chr2	140235596	140235796	+	0.23757	NA	intron (NM_001033296, intron 18 of 19)	L1VL2|LINE|L1	65050	NM_027093	69487	Mm.287921	NM_027093	ENSMUSG00000027384	Ndufaf5	2310003L22Rik	NADH:ubiquinone oxidoreductase complex assembly factor 5	protein-coding	0.005000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-1863	chr4	143412818	143413018	+	0.23757	NA	5' UTR (NM_172877, exon 1 of 5)	5' UTR (NM_172877, exon 1 of 5)	492	NM_001355724	242736	Mm.275953	NM_172877	ENSMUSG00000046862	Pramef8	4732496O08Rik|AU023234	PRAME family member 8	protein-coding	0.075000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-93	chr1	106269602	106269802	+	0.23757	NA	intron (NM_133821, intron 1 of 16)	intron (NM_133821, intron 1 of 16)	97833	NM_133821	98432	Mm.24115	NM_133821	ENSMUSG00000044340	Phlpp1	AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606	PH domain and leucine rich repeat protein phosphatase 1	protein-coding	0.005000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-1389	chr2	68764174	68764374	+	0.23757	NA	Intergenic	L1M2|LINE|L1	-97167	NM_001347161	241447	Mm.222222	NM_172856	ENSMUSG00000027035	Cers6	4732462C07Rik|AW544719|Lass6|T1L	ceramide synthase 6	protein-coding	0.005000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-2292	chr7	116540727	116540927	+	0.23757	NA	TTS (NM_001130479)	TTS (NM_001130479)	36458	NM_001360375	53322	Mm.9901	NM_016773	ENSMUSG00000030659	Nucb2	AI607786|Calnuc|Nefa|Nesfatin-1	nucleobindin 2	protein-coding	0.010000	0.517413			
ePOU_nocontrol_ChIP_peaks_unique-1114	chr17	56425439	56425639	+	0.23757	NA	exon (NM_011218, exon 14 of 33)	exon (NM_011218, exon 14 of 33)	-6630	NR_105943	102465590		NR_105943	ENSMUSG00000098339	Mir6977	Gm27922|mmu-mir-6977	microRNA 6977	ncRNA	0.155000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-1402	chr2	78928412	78928612	+	0.23757	NA	non-coding (NR_151458, exon 7 of 7)	non-coding (NR_151458, exon 7 of 7)	58834	NM_001356395	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.010000	0.422886			
merged_common-633	chr5	29568825	29569025	+	0.23757	NA	promoter-TSS (NM_133907)	promoter-TSS (NM_133907)	-317	NM_133907	100763	Mm.137746	NM_133907	ENSMUSG00000039000	Ube3c	AI853514|mKIAA0010	ubiquitin protein ligase E3C	protein-coding	0.065000	0.517413			
ePOU_nocontrol_ChIP_peaks_unique-535	chr12	41583415	41583615	+	0.23757	NA	intron (NM_053122, intron 4 of 6)	intron (NM_053122, intron 4 of 6)	-97458	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.000000	0.258706			-42(CAAATATCATGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1858	chr4	138304608	138304808	+	0.23757	NA	promoter-TSS (NM_007838)	promoter-TSS (NM_007838)	-30	NM_007838	13200	Mm.7236	NM_007838	ENSMUSG00000028757	Ddost	-	dolichyl-di-phosphooligosaccharide-protein glycotransferase	protein-coding	0.095000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-252	chr10	68268348	68268548	+	0.23757	NA	intron (NM_023598, intron 2 of 9)	intron (NM_023598, intron 2 of 9)	10278	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.010000	0.328358			
ePOU_nocontrol_ChIP_peaks_unique-92	chr1	99317221	99317421	+	0.23757	NA	Intergenic	Intergenic	-455080	NM_172851	241175	Mm.251301	NM_172851	ENSMUSG00000067028	Cntnap5b	C230078M14Rik|Caspr5-2	contactin associated protein-like 5B	protein-coding	0.000000	0.358209			-59(TTACACTCATGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-961	chr16	16896330	16896530	+	0.23757	NA	promoter-TSS (NM_176833)	promoter-TSS (NM_176833)	-39	NM_176833	68606	Mm.230296	NM_176833	ENSMUSG00000026181	Ppm1f	1110021B16Rik|4933427B07Rik|CaMKPase|Popx2|mKIAA0015	protein phosphatase 1F (PP2C domain containing)	protein-coding	0.030000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-849	chr15	22399808	22400008	+	0.23757	NA	Intergenic	Intergenic	315076	NM_001165971	545091	Mm.475598	NM_001165971		Hnrnpa1l2-ps2	EG545091|Gm5803	heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2	protein-coding	0.005000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-2218	chr7	46919553	46919753	+	0.23757	NA	intron (NM_001348088, intron 1 of 7)	CpG	316	NM_021884	22088	Mm.241334	NM_021884	ENSMUSG00000014402	Tsg101	AI255943|CC2	tumor susceptibility gene 101	protein-coding	0.110000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-758	chr14	29028963	29029163	+	0.23757	NA	3' UTR (NM_176920, exon 3 of 3)	3' UTR (NM_176920, exon 3 of 3)	10855	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.000000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-29	chr1	53032588	53032788	+	0.23757	NA	Intergenic	Intergenic	-28952	NM_010834	17700	Mm.3514	NM_010834	ENSMUSG00000026100	Mstn	Cmpt|Gdf8	myostatin	protein-coding	0.000000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-2448	chr8	106338152	106338352	+	0.23757	NA	promoter-TSS (NM_021491)	promoter-TSS (NM_021491)	-287	NM_021491	58994	Mm.23298	NM_021491	ENSMUSG00000031906	Smpd3	4631433G07Rik|AI427456|AW537966|fro|nSMase2	sphingomyelin phosphodiesterase 3, neutral	protein-coding	0.030000	0.587065			
ePOU_nocontrol_ChIP_peaks_unique-1666	chr3	115856347	115856547	+	0.23757	NA	Intergenic	Intergenic	31612	NR_027894	68161	Mm.392043	NR_015487	ENSMUSG00000054426	A930005H10Rik	-	RIKEN cDNA A930005H10 gene	ncRNA	0.005000	0.343284			-49(TTTTATTCATGCTAAT,+,0.00),-29(TATTTATCATTTAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1980	chr5	114682896	114683096	+	0.23757	NA	intron (NM_019821, intron 1 of 4)	intron (NM_019821, intron 1 of 4)	7939	NM_019821	56356	Mm.275766	NM_019821	ENSMUSG00000011884	Gltp	1110001F24Rik|C76925|C77564	glycolipid transfer protein	protein-coding	0.015000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-1988	chr5	122547378	122547578	+	0.23757	NA	Intergenic	Intergenic	-45253	NM_001110140	11938	Mm.227583	NM_009722	ENSMUSG00000029467	Atp2a2	9530097L16Rik|D5Wsu150e|SERCA2|SERCA2B|Serca2a|mKIAA4195	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	protein-coding	0.020000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-2235	chr7	75366344	75366544	+	0.23757	NA	Intergenic	MTC|LTR|ERVL-MaLR	-57182	NM_153579	64176	Mm.273082	NM_153579	ENSMUSG00000053025	Sv2b	A830038F04Rik|AI850768|mKIAA0735	synaptic vesicle glycoprotein 2 b	protein-coding	0.005000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-305	chr10	108286949	108287149	+	0.23757	NA	Intergenic	Intergenic	-45140	NM_054056	114774	Mm.391419	NM_054056	ENSMUSG00000035873	Pawr	2310001G03Rik|PAR4|Par-4	PRKC, apoptosis, WT1, regulator	protein-coding	0.010000	0.417910			
merged_common-637	chr5	44681331	44681531	+	0.23757	NA	intron (NM_001077398, intron 1 of 8)	L1ME4c|LINE|L1	118315	NM_001359071	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.005000	0.288557			
ePOU_nocontrol_ChIP_peaks_unique-286	chr10	93889461	93889661	+	0.23757	NA	exon (NM_019648, exon 2 of 12)	exon (NM_019648, exon 2 of 12)	1641	NM_019648	56307	Mm.289329	NM_019648	ENSMUSG00000036112	Metap2	4930584B20Rik|A930035J23Rik|AI047573|AL024412|AU014659|Amp2|Mnpep|p67|p67eIF2	methionine aminopeptidase 2	protein-coding	0.070000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-1449	chr2	117249645	117249845	+	0.23757	NA	promoter-TSS (NM_026620)	promoter-TSS (NM_026620)	6	NM_026620	68215	Mm.219389	NM_026620	ENSMUSG00000027349	Fam98b	2610510H03Rik	family with sequence similarity 98, member B	protein-coding	0.070000	0.601990			
merged_common-235	chr13	51491753	51491953	+	0.20035	NA	intron (NM_009167, intron 2 of 11)	intron (NM_009167, intron 2 of 11)	77598	NM_009167	20418	Mm.131870	NM_009167	ENSMUSG00000021448	Shc3	N-Shc|Rai|ShcC	src homology 2 domain-containing transforming protein C3	protein-coding	0.010000	0.502488			-2(ATGTGCATGACAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2401	chr8	70698753	70698953	+	0.20035	NA	5' UTR (NM_010592, exon 1 of 1)	5' UTR (NM_010592, exon 1 of 1)	1114	NM_010592	16478	Mm.419851	NM_010592	ENSMUSG00000071076	Jund	Jund1	jun D proto-oncogene	protein-coding	0.150000	0.706468			
merged_common-163	chr11	86757589	86757789	+	0.19995	NA	promoter-TSS (NM_001356393)	promoter-TSS (NM_001356393)	-122	NM_001356393	67300	Mm.254588	NM_001003908	ENSMUSG00000047126	Cltc	3110065L21Rik|CHC|R74732	clathrin, heavy polypeptide (Hc)	protein-coding	0.080000	0.562189			
merged_common-488	chr2	101723004	101723204	+	0.19995	NA	intron (NM_001355625, intron 8 of 8)	intron (NM_001355625, intron 8 of 8)	44684	NM_009424	22034	Mm.292729	NM_009424	ENSMUSG00000027164	Traf6	2310003F17Rik|AI851288|C630032O20Rik	TNF receptor-associated factor 6	protein-coding	0.010000	0.587065			-14(CCTTTGTCATGCAGAG,+,0.00)
merged_common-83	chr10	19277543	19277743	+	0.19995	NA	Intergenic	Intergenic	-78896	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	0.015000	0.393035			25(GTTTCCATGAAAAAGT,-,0.00),43(GTCTGCATTACAAAAC,-,0.00)
merged_common-135	chr11	20477460	20477660	+	0.19995	NA	Intergenic	Intergenic	-65606	NM_001362867	58172	Mm.339676	NM_021372	ENSMUSG00000049800	Sertad2	AB041541|AU021878|Kiaa0127|MNCb-1504|SEI-2|Sei2|TRIP-Br2|mKIAA0127	SERTA domain containing 2	protein-coding	0.025000	0.577114			1(CGATTGTCATGTTAAT,+,0.00)
merged_common-686	chr6	37658150	37658350	+	0.19995	NA	Intergenic	Intergenic	128077	NM_145364	208665	Mm.262635	NM_145364	ENSMUSG00000038641	Akr1d1	-	aldo-keto reductase family 1, member D1	protein-coding	0.015000	0.482587			3(GTTTGCATGACAAAGA,-,0.00)
merged_common-127	chr11	3185088	3185288	+	0.19995	NA	intron (NM_001363224, intron 6 of 28)	intron (NM_001363224, intron 6 of 28)	8415	NM_030207	78887	Mm.394071	NM_030207	ENSMUSG00000023764	Sfi1	-	Sfi1 homolog, spindle assembly associated (yeast)	protein-coding	0.000000	0.437811		31(ATTGAATATGTATG,+,0.00),31(ATTGAATATGTATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-471	chr11	103102758	103102958	+	0.19995	NA	5' UTR (NM_025988, exon 2 of 11)	5' UTR (NM_025988, exon 2 of 11)	1170	NM_025988	67131	Mm.390367	NM_025988	ENSMUSG00000056938	Acbd4	2010009P05Rik|2010015A21Rik|AI849317	acyl-Coenzyme A binding domain containing 4	protein-coding	0.090000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-986	chr16	30331154	30331354	+	0.19995	NA	intron (NM_001128096, intron 30 of 33)	intron (NM_001128096, intron 30 of 33)	-20473	NM_008148	14729	Mm.3519	NM_008148	ENSMUSG00000047953	Gp5	GPV	glycoprotein 5 (platelet)	protein-coding	0.010000	0.388060			
merged_common-317	chr16	11143966	11144166	+	0.17420	NA	intron (NR_027502, intron 19 of 22)	LSU-rRNA_Hsa|rRNA|rRNA	-9534	NM_029582	106200	Mm.291015	NM_029582	ENSMUSG00000022498	Txndc11	2810408E11Rik|AI427833|EFP1|Txdc11	thioredoxin domain containing 11	protein-coding	0.160000	0.746269			
merged_common-642	chr5	72268651	72268851	+	0.17208	NA	intron (NR_003966, intron 14 of 22)	MER46C|DNA|TcMar-Tigger	65408	NM_153389	231287	Mm.32775	NM_153389	ENSMUSG00000046808	Atp10d	9830145H18Rik|ATPVD|D5Buc24e	ATPase, class V, type 10D	protein-coding	0.030000	0.393035			-76(ATTTCCATAGGAAAGG,-,0.00),27(ATTAGCATGACAATCT,-,0.00)
merged_common-278	chr14	105708673	105708873	+	0.17208	NA	Intergenic	Intergenic	-85003	NR_105814	102465207		NR_105814	ENSMUSG00000098780	Mir6390	Gm27562|mmu-mir-6390	microRNA 6390	ncRNA	0.015000	0.383085			
merged_common-421	chr19	6921984	6922184	+	0.17208	NA	promoter-TSS (NM_007953)	promoter-TSS (NM_007953)	-276	NM_007953	26379	Mm.386776	NM_007953	ENSMUSG00000024955	Esrra	ERRalpha|Err1|Estrra|Nr3b1	estrogen related receptor, alpha	protein-coding	0.045000	0.547264		57(ACTGCATATGCATA,+,0.00),57(ACTGCATATGCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1668	chr3	116327352	116327552	+	0.17208	NA	intron (NM_001080818, intron 9 of 15)	intron (NM_001080818, intron 9 of 15)	26792	NM_001355646	229776	Mm.17647	NM_001080818	ENSMUSG00000033502	Cdc14a	A830059A17Rik|CDC14A2|CDC14a1|Cdc14	CDC14 cell division cycle 14A	protein-coding	0.060000	0.542289			-30(ATTTGCATAACCGTGC,-,0.00)
merged_common-705	chr6	85075203	85075403	+	0.17208	NA	promoter-TSS (NR_002702)	promoter-TSS (NR_002702)	-879	NR_002702	108176	Mm.431982	NR_002702		Npm3-ps1	-	nucleoplasmin 3, pseudogene 1	pseudo	0.005000	0.417910			-80(CCATTCTCATTCAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-49	chr10	23195412	23195612	+	0.17208	NA	intron (NM_001347372, intron 3 of 18)	intron (NM_001347372, intron 3 of 18)	154378	NM_001347372	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.005000	0.477612			-8(TTGTGCATAACAAAGC,-,0.00)
merged_common-666	chr5	129117713	129117913	+	0.17208	NA	intron (NM_001081342, intron 5 of 25)	Lx8|LINE|L1	21063	NM_001347486	243277	Mm.440501	NM_177734	ENSMUSG00000044017	Adgrd1	E230012M21Rik|Gpr133	adhesion G protein-coupled receptor D1	protein-coding	0.020000	0.402985			11(CCATTCTCATGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1911	chr5	32863369	32863569	+	0.17208	NA	promoter-TSS (NM_001170567)	promoter-TSS (NM_001170567)	-252	NM_001025426	277854	Mm.101524	NM_177786	ENSMUSG00000037426	Depdc5	AV016528	DEP domain containing 5	protein-coding	0.080000	0.507463			17(AATTTTCCATGCAAAG,+,0.00)
merged_common-732	chr7	45017750	45017950	+	0.17208	NA	promoter-TSS (NM_009101)	promoter-TSS (NM_009101)	-92	NM_009101	20130	Mm.389894	NM_009101	ENSMUSG00000038387	Rras	AI573426	related RAS viral (r-ras) oncogene	protein-coding	0.025000	0.517413			
merged_common-211	chr12	82611873	82612073	+	0.17208	NA	Intergenic	L1MA9|LINE|L1	-4952	NM_015812	50779	Mm.126176	NM_015812	ENSMUSG00000021219	Rgs6	-	regulator of G-protein signaling 6	protein-coding	0.000000	0.373134		38(TTTTAATATGCATA,+,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-530	chr9	41327458	41327658	+	0.17208	NA	Intergenic	Intergenic	-48968	NR_131929	73144	Mm.38166	NM_001033153	ENSMUSG00000074415	Mir100hg	2610203C20Rik|3110039I08Rik|AI848448|D230004N17Rik|D3Mgi9	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	ncRNA	0.010000	0.308458			21(ATTTGCATTTGAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-898	chr15	76607458	76607658	+	0.17208	NA	promoter-TSS (NM_001164173)	promoter-TSS (NM_001164173)	33	NM_001164173	94230	Mm.45141	NM_053193	ENSMUSG00000034022	Cpsf1	CPSF160	cleavage and polyadenylation specific factor 1	protein-coding	0.130000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-1610	chr3	79417033	79417233	+	0.17208	NA	intron (NM_001142953, intron 2 of 4)	intron (NM_001142953, intron 2 of 4)	71762	NM_001370773	100233207	Mm.373801	NM_001142953	ENSMUSG00000091685	Gm17359	-	predicted gene, 17359	protein-coding	0.010000	0.457711			38(ATTAGCATAACAAAAG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-375	chr4	29094272	29094472	+	0.17208	NA	Intergenic	RMER1A|Other|Other	26293	NR_151693	102634169		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0.005000	0.462687			64(CTTTTGTAATGGATAT,+,0.00)
merged_common-413	chr18	64886981	64887181	+	0.17208	NA	promoter-TSS (NM_001114386)	promoter-TSS (NM_001114386)	-675	NM_001114386	83814	Mm.98668	NM_031881	ENSMUSG00000024589	Nedd4l	1300012C07Rik|Nedd4-2|Nedd4b	neural precursor cell expressed, developmentally down-regulated gene 4-like	protein-coding	0.040000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-2065	chr6	40325379	40325579	+	0.17208	NA	promoter-TSS (NM_023538)	promoter-TSS (NM_023538)	1	NM_023538	69923	Mm.32840	NM_023538	ENSMUSG00000029916	Agk	2610037M15Rik|6720408I04Rik|AI465370|Mulk	acylglycerol kinase	protein-coding	0.090000	0.671642			
merged_common-663	chr5	118687139	118687339	+	0.17208	NA	intron (NM_172424, intron 4 of 30)	RLTR11A|LTR|ERVK	126520	NM_001347445	76199	Mm.206238	NM_172424	ENSMUSG00000018076	Med13l	2210413I17Rik|6330591G05Rik|9030618F05Rik|Thrap2|Trap240L|mKIAA1025	mediator complex subunit 13-like	protein-coding	0.000000	0.422886			11(TTTAGCATTACAATGG,-,0.00)
merged_common-579	chr4	40948337	40948537	+	0.17208	NA	promoter-TSS (NM_029814)	promoter-TSS (NM_029814)	-116	NM_029814	76959	Mm.212763	NM_029814	ENSMUSG00000028419	Chmp5	2210412K09Rik|AW545668	charged multivesicular body protein 5	protein-coding	0.070000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-2192	chr7	27167022	27167222	+	0.17208	NA	promoter-TSS (NM_053208)	promoter-TSS (NM_053208)	-320	NM_053208	112406	Mm.29978	NM_053208	ENSMUSG00000058709	Egln2	0610011A13Rik|C85656|Hif-p4h-1|Ier4|Phd1|SM-20	egl-9 family hypoxia-inducible factor 2	protein-coding	0.020000	0.437811			-36(CATTTGCTATGCAAAT,+,0.00)
merged_common-87	chr10	24590849	24591049	+	0.17208	NA	intron (NR_163910, intron 1 of 4)	intron (NR_163910, intron 1 of 4)	-4493	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ccn2	Ctgf|Fisp12|Hcs24|fisp-12	cellular communication network factor 2	protein-coding	0.010000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-610	chr12	104983572	104983772	+	0.17208	NA	intron (NM_172500, intron 1 of 16)	intron (NM_172500, intron 1 of 16)	15005	NM_001042699	212073	Mm.212688	NM_172500	ENSMUSG00000054150	Syne3	KASH3|nesprin-3	spectrin repeat containing, nuclear envelope family member 3	protein-coding	0.010000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-2283	chr7	114275837	114276037	+	0.17208	NA	intron (NM_011965, intron 1 of 9)	CpG	179	NM_011965	26440	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.080000	0.651741			
merged_common-699	chr6	81265831	81266031	+	0.17208	NA	Intergenic	Intergenic	629732	NR_106091	102465711		NR_106091	ENSMUSG00000106154	Mir7232	mmu-mir-7232	microRNA 7232	ncRNA	0.000000	0.308458			8(TTTAACATGACAAAGG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-140	chr13	30362474	30362674	+	0.17208	NA	intron (NM_177322, intron 2 of 2)	intron (NM_177322, intron 2 of 2)	26218	NM_177322	11607	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agt1ar|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	0.020000	0.417910		-30(TGTGCATATTCATG,+,0.00),-30(TGTGCATATTCATG,-,0.00)	
merged_common-462	chr2	30807723	30807923	+	0.17208	NA	promoter-TSS (NM_001356434)	promoter-TSS (NM_001356434)	-145	NM_001356434	66617	Mm.33167	NM_170592	ENSMUSG00000026857	Ntmt1	2610205E22Rik|AL033331|AL033332|Mettl11a|NTM1A	N-terminal Xaa-Pro-Lys N-methyltransferase 1	protein-coding	0.060000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-1466	chr2	128457870	128458070	+	0.17208	NA	Intergenic	Intergenic	-28619	NR_028590	100043424	Mm.297222	NR_028589		Morrbid	Gm14005|Mir4435-2hg	myeloid RNA regulator of BCL2L11 induced cell death	ncRNA	0.020000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-1641	chr3	95819578	95819778	+	0.17208	NA	promoter-TSS (NM_001081293)	promoter-TSS (NM_001081293)	-725	NM_001368178	75137	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0.050000	0.587065			
ePOU_nocontrol_ChIP_peaks_unique-1894	chr5	20882234	20882434	+	0.17208	NA	promoter-TSS (NM_172992)	promoter-TSS (NM_172992)	-119	NM_177601	212090	Mm.347525	NM_177601	ENSMUSG00000045435	Tmem60	BC027828	transmembrane protein 60	protein-coding	0.090000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-388	chr11	52286491	52286691	+	0.17208	NA	Intergenic	Intergenic	-3577	NM_001313981	21414	Mm.31630	NM_009331	ENSMUSG00000000782	Tcf7	AI465550|TCF-1|Tcf1	transcription factor 7, T cell specific	protein-coding	0.015000	0.567164			-25(CTATTGTTATGCAAAT,+,0.00)
merged_common-244	chr13	92639124	92639324	+	0.17208	NA	intron (NM_172588, intron 1 of 11)	intron (NM_172588, intron 1 of 11)	28086	NM_172588	218442	Mm.297970	NM_172588	ENSMUSG00000021703	Serinc5	A130038L21Rik|AIGP3|C86123|TPO1	serine incorporator 5	protein-coding	0.010000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-616	chr12	111038861	111039061	+	0.17208	NA	promoter-TSS (NM_198023)	promoter-TSS (NM_198023)	-406	NM_198023	217864	Mm.23808	NM_198023	ENSMUSG00000037896	Rcor1	5730409O11|6720480E22Rik|AU042633|D12Wsu95e|Rocr1|mKIAA0071	REST corepressor 1	protein-coding	0.115000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-1307	chr19	44311942	44312142	+	0.17208	NA	Intergenic	Intergenic	8871	NR_039574	100628619		NR_039574	ENSMUSG00000093315	Mir5114	mmu-mir-5114|mu-mir-5114	microRNA 5114	ncRNA	0.025000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-2641	chrX	120944585	120944785	+	0.17208	NA	Intergenic	RLTR13D6|LTR|ERVK	-631459	NM_001281531	624957		NM_001281531	ENSMUSG00000083616	H2afb3	EG624957|H2A.Bbd3|H2afb3-ps	H2A histone family, member B3	protein-coding	0.005000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-827	chr14	117337337	117337537	+	0.17208	NA	intron (NM_001079844, intron 2 of 9)	intron (NM_001079844, intron 2 of 9)	412140	NM_011821	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.000000	0.472637			-26(ATTAAAATGAGAATGG,-,0.00)
merged_common-679	chr5	151368636	151368836	+	0.17208	NA	promoter-TSS (NR_045699)	promoter-TSS (NR_045699)	61	NR_045700	625175	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.095000	0.671642			
merged_common-709	chr6	90504644	90504844	+	0.17208	NA	Intergenic	PB1D7|SINE|Alu	42168	NM_023184	66277	Mm.38343	NM_023184	ENSMUSG00000030087	Klf15	1810013I09Rik|AV048136|AW494632|CKLF|KKLF	Kruppel-like factor 15	protein-coding	0.005000	0.437811		13(TTTACATATGCATG,+,0.00),13(TTTACATATGCATG,-,0.00)	
merged_common-248	chr13	108526602	108526802	+	0.17208	NA	Intergenic	L2a|LINE|L2	-127475	NM_011056	238871	Mm.434429	NM_011056	ENSMUSG00000021699	Pde4d	9630011N22Rik|Dpde3	phosphodiesterase 4D, cAMP specific	protein-coding	0.015000	0.388060	-19(CATGAATAATACAGT,+,0.00),-19(CATGAATAATACAGT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1391	chr2	69047979	69048179	+	0.17208	NA	intron (NM_172856, intron 5 of 9)	intron (NM_172856, intron 5 of 9)	-87721	NM_181547	329416	Mm.90047	NM_181547	ENSMUSG00000034738	Nostrin	Daip2|mDaIP2	nitric oxide synthase trafficker	protein-coding	0.010000	0.412935			7(ATCAGCATGACACAGT,-,0.00)
merged_common-268	chr14	68591626	68591826	+	0.17208	NA	Intergenic	MER31A|LTR|ERV1	-9654	NM_021475	58860	Mm.36742	NM_021475	ENSMUSG00000022057	Adamdec1	2210414L24Rik|AI574231|Dcsn	ADAM-like, decysin 1	protein-coding	0.000000	0.293532		50(CATTAAAATGCATT,+,0.00)	-7(ATATGCATCACAATAG,-,0.00)
merged_common-254	chr14	29012016	29012216	+	0.17208	NA	intron (NM_009785, intron 27 of 37)	intron (NM_009785, intron 27 of 37)	-6092	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.005000	0.328358			29(TCATTTTTATGCAGAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-945	chr15	102470289	102470489	+	0.17208	NA	promoter-TSS (NM_001103165)	promoter-TSS (NM_001103165)	-243	NM_001103166	18521	Mm.236513	NM_011042	ENSMUSG00000056851	Pcbp2	AW412548|Hnrpx|alphaCP-2	poly(rC) binding protein 2	protein-coding	0.125000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-1706	chr3	147465421	147465621	+	0.17208	NA	Intergenic	Intergenic	613154	NM_001302958	70892	Mm.187793	NM_027594	ENSMUSG00000036745	Ttll7	1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7	tubulin tyrosine ligase-like family, member 7	protein-coding	0.005000	0.293532	37(TTTGCATTATGCACT,+,0.00)		
merged_common-688	chr6	38976569	38976769	+	0.17208	NA	intron (NM_011539, intron 3 of 12)	intron (NM_011539, intron 3 of 12)	57683	NM_011539	21391	Mm.4054	NM_011539	ENSMUSG00000029925	Tbxas1	CYP5|CYP5A1|THAS|TS|TXAS|TXS	thromboxane A synthase 1, platelet	protein-coding	0.000000	0.388060			77(ATTTGCAAATAAATAA,-,0.00)
merged_common-847	chr9	111977502	111977702	+	0.17208	NA	Intergenic	MTD|LTR|ERVL-MaLR	141109	NR_029823	723815		NR_029823	ENSMUSG00000065441	Mir128-2	Mirn128-2|Mirn128b|mir-128-2|mir-128b	microRNA 128-2	ncRNA	0.005000	0.368159			-10(ATTAACATGAGAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2571	chr9	91708155	91708355	+	0.17208	NA	Intergenic	Intergenic	339283	NM_009576	22774	Mm.8062	NM_009576	ENSMUSG00000036972	Zic4	-	zinc finger protein of the cerebellum 4	protein-coding	0.005000	0.338308			-16(ATTTACATAAGAATAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2643	chrX	134659401	134659601	+	0.17208	NA	Intergenic	L1ME1|LINE|L1	26961	NR_045454	77983	Mm.153204	NR_045454	ENSMUSG00000087024	B230119M05Rik	-	RIKEN cDNA B230119M05 gene	ncRNA	0.005000	0.318408		57(CCTGCATATTTATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-128	chr1	154150975	154151175	+	0.17208	NA	Intergenic	Intergenic	-50112	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.010000	0.417910			-37(CTATTGTAATGCAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2216	chr7	45204406	45204606	+	0.17208	NA	intron (NM_201374, intron 1 of 19)	CpG	386	NM_201374	384619	Mm.214931	NM_201374	ENSMUSG00000038292	Ccdc155	Gm1434|KASH5	coiled-coil domain containing 155	protein-coding	0.090000	0.611940			
merged_common-594	chr4	81926884	81927084	+	0.17208	NA	Intergenic	Intergenic	-138396	NR_040659	545641	Mm.216028	NR_040659	ENSMUSG00000085022	Gm5860	EG545641	predicted gene 5860	ncRNA	0.015000	0.398010			
merged_common-796	chr8	86464770	86464970	+	0.17208	NA	Intergenic	Intergenic	101720	NM_172912	244562	Mm.67485	NM_172912	ENSMUSG00000036872	Abcc12	4930467B22Rik|MRP9	ATP-binding cassette, sub-family C (CFTR/MRP), member 12	protein-coding	0.000000	0.368159			
merged_common-221	chr13	12554006	12554206	+	0.14592	NA	Intergenic	PB1D11|SINE|Alu	-11777	NM_026184	67475	Mm.358706	NM_026184	ENSMUSG00000057069	Ero1lb	1300013B24Rik|1700065B09Rik|AI447560|Ero1b|ero1-beta	ERO1-like beta (S. cerevisiae)	protein-coding	0.005000	0.368159			
merged_common-437	chr19	40349743	40349943	+	0.14592	NA	intron (NM_001034963, intron 11 of 22)	intron (NM_001034963, intron 11 of 22)	52467	NM_001034964	20411	Mm.210815	NM_009166	ENSMUSG00000025006	Sorbs1	2310065E01Rik|9530001P15Rik|CAP|SH3P12|Sh3d5|mKIAA1296	sorbin and SH3 domain containing 1	protein-coding	0.010000	0.407960			37(CCTTTCATATGCACAT,+,0.00)
merged_common-78	chr1	192834725	192834925	+	0.14592	NA	non-coding (NR_155503, exon 1 of 1)	non-coding (NR_155503, exon 1 of 1)	388	NR_155503	320952	Mm.100944	NR_155503		A730013G03Rik	-	RIKEN cDNA A730013G03 gene	ncRNA	0.120000	0.746269			-11(TCTTTGTTATGTTAAT,+,0.00)
merged_common-199	chr12	42022271	42022471	+	0.14592	NA	Intergenic	Lx7|LINE|L1	-536314	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.000000	0.368159			26(GGATTGTTATGCATAT,+,0.00)
merged_common-153	chr11	69758978	69759178	+	0.13623	NA	promoter-TSS (NM_001291068)	promoter-TSS (NM_001291068)	-445	NM_001291068	20020	Mm.16533	NM_009089	ENSMUSG00000005198	Polr2a	220kDa|Rpb1|Rpo2-1	polymerase (RNA) II (DNA directed) polypeptide A	protein-coding	0.070000	0.582090	34(TATGCATAAGGCAGG,-,0.00)	9(CATGAATATTCAGT,+,0.00),9(CATGAATATTCAGT,-,0.00),28(GCTGAATATGCATA,+,0.00),28(GCTGAATATGCATA,-,0.00)	
merged_common-143	chr11	44235474	44235674	+	0.13623	NA	Intergenic	Intergenic	-164489	NM_001303244	16160	Mm.239707	NM_008352	ENSMUSG00000004296	Il12b	Il-12b|Il-12p40|Il12p40|p40	interleukin 12b	protein-coding	0.000000	0.427861			-25(CATTTGCCTTGCAAAA,+,0.00),-3(CTTTGCACAGCAAAGC,-,0.00),72(ATCTGCATGATAATGT,-,0.00)
merged_common-816	chr8	126753513	126753713	+	0.13623	NA	Intergenic	Intergenic	-95407	NR_151740	414091	Mm.240068	NM_001033546		A630001O12Rik	Gm45803	RIKEN cDNA A630001O12 gene	ncRNA	0.005000	0.388060	40(AATGCATATTGCATA,+,0.00),40(AATGCATATTGCATA,-,0.00)		16(ATTAGCATAATAATCA,-,0.00)
merged_common-783	chr8	46551768	46551968	+	0.13623	NA	promoter-TSS (NM_001368403)	promoter-TSS (NM_001368403)	-201	NM_001368403	71876	Mm.22108	NM_027973	ENSMUSG00000031629	Cenpu	1700029A22Rik|Mlf1ip	centromere protein U	protein-coding	0.080000	0.631841			
merged_common-428	chr19	29981040	29981240	+	0.13623	NA	Intergenic	Intergenic	-22650	NM_025741	66745	Mm.158128	NM_025741	ENSMUSG00000024815	Trpd52l3	4931412G03Rik	tumor protein D52-like 3	protein-coding	0.000000	0.308458	-22(TATGCATAATTTATG,+,0.00),-22(TATGCATAATTTATG,-,0.00),-18(CATAATTTATGCATA,+,0.00),-18(CATAATTTATGCATA,-,0.00)	-11(TATGCATATGTAAT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1908	chr5	31526810	31527010	+	0.13623	NA	promoter-TSS (NM_001347328)	promoter-TSS (NM_001347328)	-85	NM_009206	20534	Mm.352407	NM_009206	ENSMUSG00000029141	Slc4a1ap	kanadaptin	solute carrier family 4 (anion exchanger), member 1, adaptor protein	protein-coding	0.035000	0.517413			
ePOU_nocontrol_ChIP_peaks_unique-1542	chr3	19406315	19406515	+	0.10367	NA	Intergenic	Intergenic	-95093	NM_001122759	18583	Mm.355614	NM_008802	ENSMUSG00000069094	Pde7a	AU015378|AW047537	phosphodiesterase 7A	protein-coding	0.020000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-1570	chr3	46769326	46769526	+	0.10367	NA	Intergenic	Intergenic	131356	NR_105800	102465199		NR_105800	ENSMUSG00000098417	Mir6379	Gm27730|mmu-mir-6379	microRNA 6379	ncRNA	0.010000	0.313433			
ePOU_nocontrol_ChIP_peaks_unique-2486	chr9	14839285	14839485	+	0.10367	NA	Intergenic	Intergenic	-20825	NM_010287	14608	Mm.4672	NM_010287	ENSMUSG00000031932	Gpr83	AW045253|Gir|Gpr72|RP105|RP39|RP82	G protein-coupled receptor 83	protein-coding	0.000000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-2576	chr9	96202148	96202348	+	0.10367	NA	intron (NM_178667, intron 2 of 13)	(TATATG)n|Simple_repeat|Simple_repeat	5973	NM_178667	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.000000	0.343284		5(TAAGCATATGCATA,+,0.00),5(TAAGCATATGCATA,-,0.00),11(TATGCATATACAAT,-,0.00)	-26(ACATATTTATGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-662	chr13	44968904	44969104	+	0.10367	NA	intron (NM_025772, intron 6 of 9)	RLTR25A|LTR|ERVK	33092	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.010000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-2120	chr6	94780959	94781159	+	0.10367	NA	Intergenic	Intergenic	-80914	NM_001355269	16206	Mm.245210	NM_008377	ENSMUSG00000030029	Lrig1	D6Bwg0781e|Img|LIG-1	leucine-rich repeats and immunoglobulin-like domains 1	protein-coding	0.020000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-697	chr13	90358266	90358466	+	0.10367	NA	Intergenic	Intergenic	268699	NM_025335	66074	Mm.241387	NM_025335	ENSMUSG00000012422	Tmem167	0610041E09Rik|5730424F14Rik|AU041184|AW537806|Gm10085|Tmem167a	transmembrane protein 167	protein-coding	0.005000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-224	chr10	38308792	38308992	+	0.10367	NA	Intergenic	Intergenic	133118	NR_131035	75877	Mm.402094	NR_131035	ENSMUSG00000111234	4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA	0.005000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-919	chr15	88819354	88819554	+	0.10367	NA	promoter-TSS (NM_145477)	promoter-TSS (NM_145477)	-136	NM_001142357	223774	Mm.41512	NM_145477	ENSMUSG00000035845	Alg12	ECM39	asparagine-linked glycosylation 12 (alpha-1,6-mannosyltransferase)	protein-coding	0.075000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-2178	chr7	6172091	6172291	+	0.10367	NA	promoter-TSS (NM_028316)	promoter-TSS (NM_028316)	-322	NM_001146024	72667	Mm.274089	NM_028316	ENSMUSG00000044876	Zfp444	2810031J10Rik|6230401O10Rik|mFLJ00134	zinc finger protein 444	protein-coding	0.050000	0.492537			
merged_common-383	chr17	84596446	84596646	+	0.10367	NA	intron (NM_177606, intron 21 of 29)	intron (NM_177606, intron 21 of 29)	-29929	NM_172256	213575	Mm.246119	NM_172256	ENSMUSG00000024253	Dync2li1	4933404O11Rik|CGI-60|D2lic|LIC3|mD2LIC	dynein cytoplasmic 2 light intermediate chain 1	protein-coding	0.030000	0.402985			-74(CCTTTATTATGTTAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2099	chr6	71440791	71440991	+	0.10367	NA	promoter-TSS (NM_024288)	promoter-TSS (NM_024288)	-254	NM_024288	68477	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.065000	0.587065			
merged_common-204	chr12	52818874	52819074	+	0.10367	NA	intron (NM_198111, intron 2 of 13)	intron (NM_198111, intron 2 of 13)	119591	NM_198111	238161	Mm.310822	NM_198111	ENSMUSG00000061603	Akap6	AI482140|Akapalpha|Akapbeta|PRKA	A kinase (PRKA) anchor protein 6	protein-coding	0.025000	0.437811			
merged_common-190	chr12	26542460	26542660	+	0.10367	NA	Intergenic	Intergenic	73345	NM_020557	22169	Mm.271839	NM_020557	ENSMUSG00000020638	Cmpk2	1200004E04Rik|TDKI|Tyki	cytidine monophosphate (UMP-CMP) kinase 2, mitochondrial	protein-coding	0.005000	0.437811			64(GCATTGACATGGAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1552	chr3	29166296	29166496	+	0.10367	NA	intron (NR_151638, intron 4 of 13)	intron (NR_151638, intron 4 of 13)	83865	NM_029412	75740	Mm.330948	NM_029412	ENSMUSG00000063600	Egfem1	6130401L20Rik|Efcab11	EGF-like and EMI domain containing 1	protein-coding	0.005000	0.293532			
ePOU_nocontrol_ChIP_peaks_unique-1489	chr2	146512046	146512246	+	0.10367	NA	promoter-TSS (NM_001033348)	promoter-TSS (NM_001033348)	-142	NM_001033348	241694	Mm.222310	NM_001033348	ENSMUSG00000037110	Ralgapa2	A230067G21Rik|AS250|BC053994|RGC2|pp250	Ral GTPase activating protein, alpha subunit 2 (catalytic)	protein-coding	0.130000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-927	chr15	93748769	93748969	+	0.10367	NA	Intergenic	Intergenic	-152967	NM_001033217	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.000000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-1284	chr19	27429775	27429975	+	0.10367	NA	promoter-TSS (NR_027987)	promoter-TSS (NR_027987)	33	NR_131940	52874	Mm.261027	NM_177474	ENSMUSG00000041360	Pum3	1110069H02Rik|AA675048|D19Bwg1357e	pumilio RNA-binding family member 3	protein-coding	0.090000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-28	chr1	52597452	52597652	+	0.10367	NA	Intergenic	Intergenic	-17260	NR_151614	102634661	Mm.337881	NR_151614	ENSMUSG00000099878	Gm28178	-	predicted gene 28178	ncRNA	0.015000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-2506	chr9	35559151	35559351	+	0.10367	NA	promoter-TSS (NM_013932)	promoter-TSS (NM_013932)	691	NM_023292	67049	Mm.425574	NM_023292	ENSMUSG00000032103	Pus3	2610020J05Rik|5730412F04Rik	pseudouridine synthase 3	protein-coding	0.020000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-1811	chr4	103313740	103313940	+	0.10367	NA	promoter-TSS (NM_025909)	promoter-TSS (NM_025909)	-6	NM_025909	67013	Mm.30021	NM_025909	ENSMUSG00000035069	Oma1	2010001O09Rik|MPRP-1|ZMPOMA1	OMA1 zinc metallopeptidase	protein-coding	0.100000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-177	chr1	184808653	184808853	+	0.10367	NA	intron (NM_001290273, intron 1 of 6)	intron (NM_001290273, intron 1 of 6)	2547	NM_001290273	66112	Mm.272457	NM_001081361	ENSMUSG00000026621	Marc1	1300013F15Rik|Mosc1	mitochondrial amidoxime reducing component 1	protein-coding	0.035000	0.482587			-58(ATTTAAAAAAGAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-833	chr14	121665860	121666060	+	0.10367	NA	intron (NM_001081039, intron 3 of 53)	intron (NM_001081039, intron 3 of 53)	32457	NM_001347596	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.005000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-215	chr10	25783370	25783570	+	0.10367	NA	intron (NR_045349, intron 4 of 4)	LTRIS2|LTR|ERV1	53967	NR_045349	73803	Mm.258921	NR_045349	ENSMUSG00000112444	4930401C15Rik	-	RIKEN cDNA 4930401C15 gene	ncRNA	0.015000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-1870	chr4	151411287	151411487	+	0.10367	NA	intron (NM_001081557, intron 5 of 23)	intron (NM_001081557, intron 5 of 23)	321817	NM_001308446	105704528	Mm.415128	NM_001308446	ENSMUSG00000078491	Gm13090	-	predicted gene 13090	protein-coding	0.025000	0.447761			-77(TCATTCTAAAGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-869	chr15	44619281	44619481	+	0.10367	NA	promoter-TSS (NM_019480)	promoter-TSS (NM_019480)	-59	NM_001357691	55960	Mm.287896	NM_019480	ENSMUSG00000022339	Ebag9	AI835379|Rcas1	estrogen receptor-binding fragment-associated gene 9	protein-coding	0.150000	0.781095			
ePOU_nocontrol_ChIP_peaks_unique-470	chr11	103028280	103028480	+	0.10367	NA	promoter-TSS (NM_008707)	promoter-TSS (NM_008707)	-163	NM_008707	18107	Mm.10265	NM_008707	ENSMUSG00000020936	Nmt1	AW536594	N-myristoyltransferase 1	protein-coding	0.060000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-2088	chr6	58841481	58841681	+	0.10367	NA	intron (NM_028705, intron 1 of 24)	intron (NM_028705, intron 1 of 24)	7881	NM_028705	73998	Mm.191892	NM_028705	ENSMUSG00000029804	Herc3	5730409F18Rik|AI646603|mKIAA0032	hect domain and RLD 3	protein-coding	0.010000	0.368159			-49(ATTAGAATTACTATAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2176	chr7	5015065	5015265	+	0.10367	NA	promoter-TSS (NM_001110329)	promoter-TSS (NM_001110329)	-343	NM_025324	66056	Mm.19974	NM_025324	ENSMUSG00000051184	Zfp524	0610012F07Rik|2300009P13Rik|Znf524	zinc finger protein 524	protein-coding	0.030000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-2629	chrX	45042250	45042450	+	0.10367	NA	Intergenic	Intergenic	-48554	NM_026841	68800	Mm.336041	NM_026841	ENSMUSG00000037086	Prr32	1110059M19Rik	proline rich 32	protein-coding	0.005000	0.313433			68(TTTTTGTTATTCAGAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1808	chr4	101647359	101647559	+	0.10367	NA	promoter-TSS (NM_175036)	promoter-TSS (NM_175036)	-324	NM_175036	230514	Mm.4756	NM_175036	ENSMUSG00000035212	Leprot	LEPR|OB-RGRP|Obrgrp|VPS55	leptin receptor overlapping transcript	protein-coding	0.030000	0.567164			
ePOU_nocontrol_ChIP_peaks_unique-1348	chr2	24975090	24975290	+	0.10367	NA	promoter-TSS (NM_001031808)	promoter-TSS (NM_001031808)	-92	NM_001031808	107733	Mm.23010	NM_001031808	ENSMUSG00000036850	Mrpl41	MRP-L27|Rpml27	mitochondrial ribosomal protein L41	protein-coding	0.105000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-2195	chr7	28179721	28179921	+	0.10367	NA	promoter-TSS (NM_001271370)	promoter-TSS (NM_001271370)	338	NM_010092	13549	Mm.57249	NM_010092	ENSMUSG00000002409	Dyrk1b	Mirk	dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1b	protein-coding	0.060000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-653	chr13	35395815	35396015	+	0.10367	NA	Intergenic	Intergenic	-183867	NR_126478	75543	Mm.489052	NR_126478	ENSMUSG00000113770	1700019C18Rik	-	RIKEN cDNA 1700019C18 gene	ncRNA	0.015000	0.472637			
Oct4_nocontrol_ChIP_peaks_unique-184	chr14	77949821	77950021	+	0.10367	NA	intron (NM_178825, intron 6 of 6)	intron (NM_178825, intron 6 of 6)	45682	NM_178825	108670	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.010000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-1969	chr5	105856317	105856517	+	0.10367	NA	Intergenic	Intergenic	-20151	NM_018759	54367	Mm.248876	NM_018759	ENSMUSG00000029290	Zfp326	5730470H14Rik|ZAN75|Znf326	zinc finger protein 326	protein-coding	0.015000	0.348259			85(CTGTTCTCATTCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2364	chr8	37230246	37230446	+	0.10367	NA	Intergenic	Intergenic	-206108	NR_126063	414128	Mm.450976	NR_126063	ENSMUSG00000110242	G630064G18Rik	-	RIKEN cDNA G630064G18 gene	ncRNA	0.000000	0.273632			
ePOU_nocontrol_ChIP_peaks_unique-54	chr1	65179157	65179357	+	0.10367	NA	promoter-TSS (NM_010497)	promoter-TSS (NM_010497)	-115	NM_010497	15926	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.100000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-1129	chr17	71721823	71722023	+	0.10367	NA	intron (NM_177087, intron 18 of 19)	intron (NM_177087, intron 18 of 19)	30982	NM_146082	225004	Mm.134151	NM_146082	ENSMUSG00000044375	Pcare	-	photoreceptor cilium actin regulator	protein-coding	0.010000	0.452736			
merged_common-511	chr2	157367512	157367712	+	0.10367	NA	promoter-TSS (NM_026968)	promoter-TSS (NM_026968)	18	NM_026968	69161	Mm.228619	NM_026968	ENSMUSG00000063019	Manbal	1810024K12Rik|AI836500	mannosidase, beta A, lysosomal-like	protein-coding	0.125000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-1604	chr3	70275122	70275322	+	0.10367	NA	Intergenic	Intergenic	267609	NM_001018031	229389	Mm.331071	NM_001018031	ENSMUSG00000027788	Otol1	Gm414	otolin 1	protein-coding	0.000000	0.358209	-77(ATTGAATTATTCATG,+,0.00),-77(ATTGAATTATTCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2575	chr9	96196726	96196926	+	0.10367	NA	intron (NM_001184706, intron 1 of 12)	intron (NM_001184706, intron 1 of 12)	551	NM_178667	211586	Mm.17977	NM_178667	ENSMUSG00000032411	Tfdp2	1110029I05Rik|A330080J22Rik|DP-3|DP3	transcription factor Dp 2	protein-coding	0.030000	0.567164			
ePOU_nocontrol_ChIP_peaks_unique-539	chr12	44989782	44989982	+	0.10367	NA	intron (NM_144552, intron 2 of 5)	intron (NM_144552, intron 2 of 5)	84601	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.015000	0.313433			
ePOU_nocontrol_ChIP_peaks_unique-1039	chr16	96617822	96618022	+	0.10367	NA	intron (NM_031174, intron 30 of 32)	intron (NM_031174, intron 30 of 32)	150316	NM_008791	18546	Mm.5023	NM_008791	ENSMUSG00000090223	Pcp4	P16Rimb19|Pcp-4|Pep19	Purkinje cell protein 4	protein-coding	0.005000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-1898	chr5	21641065	21641265	+	0.10367	NA	intron (NM_177076, intron 1 of 19)	intron (NM_177076, intron 1 of 19)	4440	NM_177076	320118	Mm.442295	NM_177076	ENSMUSG00000048520	Fbxl13	4921539K22Rik	F-box and leucine-rich repeat protein 13	protein-coding	0.005000	0.353234	-63(TATGTATAATTCAAG,+,0.00),-63(TATGTATAATTCAAG,-,0.00)	-79(CATATATATGCATA,+,0.00),-73(TATGCATATATATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1838	chr4	124035981	124036181	+	0.10367	NA	Intergenic	Intergenic	118648	NM_017475	54170	Mm.220922	NM_017475	ENSMUSG00000028646	Rragc	AU041672|Gtr2|RAGC|TIB929|YGR163W	Ras-related GTP binding C	protein-coding	0.010000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-1480	chr2	138825360	138825560	+	0.10367	NA	Intergenic	Intergenic	5531	NR_035477	100316816		NR_035477	ENSMUSG00000088983	Mir1952	mmu-mir-1952	microRNA 1952	ncRNA	0.015000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-1971	chr5	106696487	106696687	+	0.10367	NA	promoter-TSS (NM_001363321)	promoter-TSS (NM_001363321)	-62	NM_001363320	52397	Mm.249474	NM_026856	ENSMUSG00000049606	Zfp644	1110068L01Rik|AA408882|BM-005|D5Ertd689e|Zep-2	zinc finger protein 644	protein-coding	0.155000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-1842	chr4	125085108	125085308	+	0.10367	NA	promoter-TSS (NM_027310)	promoter-TSS (NM_027310)	74	NM_027310	70088	Mm.291214	NM_027310	ENSMUSG00000028863	Meaf6	2310005N01Rik|2810036M01Rik	MYST/Esa1-associated factor 6	protein-coding	0.130000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-1939	chr5	69041942	69042142	+	0.10367	NA	Intergenic	RLTR13B3|LTR|ERVK	299667	NM_175519	243043	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	0.005000	0.383085	79(ATTGCATTATTCATG,+,0.00),79(ATTGCATTATTCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1818	chr4	108118519	108118719	+	0.10367	NA	promoter-TSS (NM_011327)	promoter-TSS (NM_011327)	-72	NM_011327	20280	Mm.379011	NM_011327	ENSMUSG00000028603	Scp2	AA409774|AA409893|C76618|C79031|NSL-TP|SCP-2|SCP-X|SCPX|ns-LTP	sterol carrier protein 2, liver	protein-coding	0.070000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-156	chr1	172281612	172281812	+	0.10367	NA	intron (NM_178405, intron 13 of 22)	intron (NM_178405, intron 13 of 22)	16352	NM_178405	98660	Mm.207432	NM_178405	ENSMUSG00000007097	Atp1a2	AW060654|Atpa-3|mKIAA0778	ATPase, Na+/K+ transporting, alpha 2 polypeptide	protein-coding	0.020000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-2646	chrX	163879281	163879481	+	0.10367	NA	Intergenic	L1MA4|LINE|L1	-29636	NM_001290378	108012	Mm.426783	NM_026887	ENSMUSG00000031367	Ap1s2	1500012A13Rik|AI853648|EST1	adaptor-related protein complex 1, sigma 2 subunit	protein-coding	0.010000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-2396	chr8	67751899	67752099	+	0.10367	NA	intron (NM_177698, intron 10 of 14)	intron (NM_177698, intron 10 of 14)	66296	NM_027626	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.005000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-765	chr14	32293708	32293908	+	0.10367	NA	intron (NM_011960, intron 16 of 17)	intron (NM_011960, intron 16 of 17)	-28211	NM_001081130	239017	Mm.318302	NM_001081130	ENSMUSG00000021913	Ogdhl	-	oxoglutarate dehydrogenase-like	protein-coding	0.015000	0.388060		-71(TATGAATATATATG,-,0.00),-51(TATGCAAATGCATT,+,0.00),-51(TATGCAAATGCATT,-,0.00)	-58(GTATTTTTATGCAAAT,+,0.00),-41(CATTTATTATTTTAAT,+,0.00)
merged_common-613	chr4	131850224	131850424	+	0.10367	NA	intron (NM_025297, intron 1 of 9)	MIR|SINE|MIR	6853	NM_025297	26922	Mm.192706	NM_025297	ENSMUSG00000028910	Mecr	AI195831|NRBF-1|Nrbf1	mitochondrial trans-2-enoyl-CoA reductase	protein-coding	0.010000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-2625	chrX	13726006	13726206	+	0.10367	NA	intron (NR_037311, intron 1 of 4)	intron (NR_037311, intron 1 of 4)	6253	NR_037311	100499528		NR_037311	ENSMUSG00000092752	Mir3473a	Mir3473|mir-3473a|mmu-mir-3473|mmu-mir-3473a	microRNA 3473a	ncRNA	0.020000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-200	chr10	19591805	19592005	+	0.10367	NA	promoter-TSS (NM_010511)	promoter-TSS (NM_010511)	-44	NM_010511	15979	Mm.549	NM_010511	ENSMUSG00000020009	Ifngr1	CD119|IFN-gammaR|Ifgr|Ifngr|Nktar	interferon gamma receptor 1	protein-coding	0.055000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-806	chr14	78042627	78042827	+	0.10367	NA	Intergenic	Intergenic	46280	NM_177629	219170	Mm.320428	NM_177629	ENSMUSG00000045655	Fam216b	9330158N17|AU021034	family with sequence similarity 216, member B	protein-coding	0.005000	0.427861			
Oct4_nocontrol_ChIP_peaks_unique-12	chr1	64046670	64046870	+	0.10367	NA	intron (NM_033563, intron 2 of 3)	Charlie7a|DNA|hAT-Charlie	-4269	NR_105864	102466760		NR_105864	ENSMUSG00000098487	Mir6899	Gm27384|mmu-mir-6899	microRNA 6899	ncRNA	0.010000	0.283582			
ePOU_nocontrol_ChIP_peaks_unique-2638	chrX	98765219	98765419	+	0.10367	NA	intron (NM_001313754, intron 5 of 25)	L1_Mur2|LINE|L1	125706	NM_001313756	94190	Mm.33536	NM_052976	ENSMUSG00000031214	Ophn1	C130037N19Rik|Wtgr	oligophrenin 1	protein-coding	0.005000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-666	chr13	49341091	49341291	+	0.10367	NA	promoter-TSS (NM_001039180)	promoter-TSS (NM_001039180)	-358	NM_001039180	76895	Mm.197387	NM_029791	ENSMUSG00000037933	Bicd2	-	BICD cargo adaptor 2	protein-coding	0.080000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-435	chr11	78328269	78328469	+	0.10367	NA	promoter-TSS (NM_201406)	promoter-TSS (NM_201406)	-53	NM_201406	276846	Mm.295908	NM_201406	ENSMUSG00000041958	Pigs	BC058979|Gm393|Gm689	phosphatidylinositol glycan anchor biosynthesis, class S	protein-coding	0.095000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-1313	chr19	46689937	46690137	+	0.10367	NA	exon (NM_025563, exon 1 of 5)	exon (NM_025563, exon 1 of 5)	131	NM_025563	66439	Mm.87163	NM_025563	ENSMUSG00000062376	Borcs7	2010012O05Rik|4930569L17Rik|AI413851|AI467257	BLOC-1 related complex subunit 7	protein-coding	0.085000	0.646766			
Oct4_nocontrol_ChIP_peaks_unique-272	chr19	6235935	6236135	+	0.10367	NA	promoter-TSS (NM_198168)	promoter-TSS (NM_198168)	-195	NM_198168	225849	Mm.118076	NM_198168	ENSMUSG00000024777	Ppp2r5b	B'beta|BC026670	protein phosphatase 2, regulatory subunit B', beta	protein-coding	0.030000	0.502488			
ePOU_nocontrol_ChIP_peaks_unique-1659	chr3	108840438	108840638	+	0.10367	NA	promoter-TSS (NM_011504)	promoter-TSS (NM_011504)	-36	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.115000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-2452	chr8	109247747	109247947	+	0.10367	NA	intron (NR_126329, intron 8 of 9)	AT_rich|Low_complexity|Low_complexity	1898	NR_151498	105243282	Mm.203332	NR_151498		4922502B01Rik	2900056M07Rik	RIKEN cDNA 4922502B01 gene	ncRNA	0.010000	0.368159			-1(ATTTAAATAAAAATAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1862	chr4	141239034	141239234	+	0.10367	NA	Intergenic	Intergenic	-3750	NM_172520	213649	Mm.134460	NM_172520	ENSMUSG00000028919	Arhgef19	6030432F23|6430573B13Rik|WGEF	Rho guanine nucleotide exchange factor (GEF) 19	protein-coding	0.025000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-2613	chr9	120110433	120110633	+	0.10367	NA	exon (NM_144793, exon 1 of 7)	exon (NM_144793, exon 1 of 7)	151	NM_144793	208638	Mm.236656	NM_144793	ENSMUSG00000032519	Slc25a38	AV019094|BC010801|appoptosin	solute carrier family 25, member 38	protein-coding	0.105000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-948	chr15	103240437	103240637	+	0.10367	NA	promoter-TSS (NR_002883).2	promoter-TSS (NR_002883).2	83	NR_002883	434858	Mm.391346	NR_002883		Gm5643	EG434858	heterogeneous nuclear ribonucleoprotein A1 pseudogene	pseudo	0.080000	0.487562			
Oct4_nocontrol_ChIP_peaks_unique-488	chr7	127421846	127422046	+	0.10367	NA	promoter-TSS (NM_026999)	promoter-TSS (NM_026999)	88	NM_026999	69234	Mm.20301	NM_026999	ENSMUSG00000045251	Zfp688	2810407K09Rik|AI326029	zinc finger protein 688	protein-coding	0.075000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-423	chr11	69662524	69662724	+	0.10367	NA	promoter-TSS (NR_035455)	promoter-TSS (NR_035455)	25	NM_001301710	24070	Mm.89579	NM_011900	ENSMUSG00000018761	Mpdu1	LEC35|SL15|Supl15h	mannose-P-dolichol utilization defect 1	protein-coding	0.100000	0.686567			
ePOU_nocontrol_ChIP_peaks_unique-2605	chr9	114640079	114640279	+	0.10367	NA	promoter-TSS (NM_153585)	promoter-TSS (NM_153585)	21	NM_153585	78893	Mm.283708	NM_153585	ENSMUSG00000056167	Cnot10	2600001P13Rik	CCR4-NOT transcription complex, subunit 10	protein-coding	0.095000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1238	chr18	78259081	78259281	+	0.10367	NA	intron (NM_030683, intron 3 of 11)	Arthur1|DNA|hAT-Tip100	-52741	NM_001110274	27411	Mm.44158	NM_030683	ENSMUSG00000024552	Slc14a2	UT-A1|UT-A3	solute carrier family 14 (urea transporter), member 2	protein-coding	0.010000	0.328358			
ePOU_nocontrol_ChIP_peaks_unique-1685	chr3	127635047	127635247	+	0.10367	NA	3' UTR (NM_009718, exon 2 of 2)	3' UTR (NM_009718, exon 2 of 2)	2011	NM_009718	11924	Mm.42017	NM_009718	ENSMUSG00000027967	Neurog2	Atoh4|Math4A|bHLHa8|ngn-2|ngn2	neurogenin 2	protein-coding	0.010000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-1673	chr3	119828447	119828647	+	0.10367	NA	Intergenic	Intergenic	-45159	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.005000	0.318408			
ePOU_nocontrol_ChIP_peaks_unique-1657	chr3	108415960	108416160	+	0.10367	NA	promoter-TSS (NM_017392)	promoter-TSS (NM_017392)	-481	NM_001004177	53883	Mm.39728	NM_017392	ENSMUSG00000068740	Celsr2	Adgrc2|EGFL2|Flamingo1|flamingo|mKIAA0279|mfmi1	cadherin, EGF LAG seven-pass G-type receptor 2	protein-coding	0.140000	0.736318			
ePOU_nocontrol_ChIP_peaks_unique-480	chr11	115420045	115420245	+	0.10367	NA	promoter-TSS (NM_027862)	promoter-TSS (NM_027862)	19	NM_183285	70382	Mm.276299	NM_183285	ENSMUSG00000016940	Kctd2	2310012I15Rik	potassium channel tetramerisation domain containing 2	protein-coding	0.150000	0.815920			
ePOU_nocontrol_ChIP_peaks_unique-2323	chr7	137385823	137386023	+	0.10367	NA	intron (NM_029886, intron 3 of 3)	intron (NM_029886, intron 3 of 3)	24833	NM_029886	77252	Mm.29184	NM_029886	ENSMUSG00000040139	9430038I01Rik	-	RIKEN cDNA 9430038I01 gene	protein-coding	0.005000	0.328358			-41(ATTTACATATCAATGT,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-506	chr8	77442742	77442942	+	0.10367	NA	intron (NM_001363418, intron 3 of 21)	intron (NM_001363418, intron 3 of 21)	9247	NM_001363419	78514	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PS-GAP|PSGAP|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding	0.015000	0.323383			-61(CGTTTATCATGGATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-572	chr12	73112640	73112840	+	0.10367	NA	exon (NM_001362272, exon 2 of 3)	exon (NM_001362272, exon 2 of 3)	505	NM_011382	20474	Mm.249575	NM_011382	ENSMUSG00000034460	Six4	AI047561|AREC3|TrexBF	sine oculis-related homeobox 4	protein-coding	0.065000	0.636816			
Oct4_nocontrol_ChIP_peaks_unique-535	chr9	76113024	76113224	+	0.10367	NA	intron (NM_173731, intron 7 of 8)	intron (NM_173731, intron 7 of 8)	98147	NM_173731	208982	Mm.82306	NM_173731	ENSMUSG00000007908	Hmgcll1	BC037381	3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1	protein-coding	0.000000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-105	chr1	132437103	132437303	+	0.10367	NA	intron (NM_172516, intron 2 of 12)	intron (NM_172516, intron 2 of 12)	19750	NM_172516	213452	Mm.257120	NM_172516	ENSMUSG00000042046	Dstyk	A930019K20Rik|C430014H23Rik|C820013G01|Ripk5	dual serine/threonine and tyrosine protein kinase	protein-coding	0.005000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-2466	chr8	123020365	123020565	+	0.10367	NA	intron (NM_001081379, intron 1 of 12)	intron (NM_001081379, intron 1 of 12)	21819	NM_001081379	77087	Mm.31567	NM_001081379	ENSMUSG00000035569	Ankrd11	2410104C19Rik|3010027A04Rik|6330578C09Rik|9530048I21Rik|AA930108|Gm176|Yod	ankyrin repeat domain 11	protein-coding	0.005000	0.293532			
ePOU_nocontrol_ChIP_peaks_unique-1263	chr19	9983168	9983368	+	0.10367	NA	intron (NM_010239, intron 1 of 3)	intron (NM_010239, intron 1 of 3)	622	NM_010239	14319	Mm.1776	NM_010239	ENSMUSG00000024661	Fth1	FHC|Fth|HFt|MFH	ferritin heavy polypeptide 1	protein-coding	0.030000	0.522388			
ePOU_nocontrol_ChIP_peaks_unique-1316	chr19	52447916	52448116	+	0.10367	NA	Intergenic	Intergenic	183719	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0.000000	0.278607			
ePOU_nocontrol_ChIP_peaks_unique-2002	chr5	135369725	135369925	+	0.10367	NA	promoter-TSS (NM_001359617)	promoter-TSS (NM_001359617)	-128	NM_001359617	100609	Mm.281189	NM_145414	ENSMUSG00000000916	Nsun5	9830109N13Rik|AI326939|Nol1r|Wbscr20|Wbscr20a	NOL1/NOP2/Sun domain family, member 5	protein-coding	0.070000	0.502488			
ePOU_nocontrol_ChIP_peaks_unique-2182	chr7	16309725	16309925	+	0.10367	NA	5' UTR (NM_133234, exon 1 of 4)	5' UTR (NM_133234, exon 1 of 4)	242	NM_133234	170770	Mm.7660	NM_133234	ENSMUSG00000002083	Bbc3	PUMA|PUMA/JFY1	BCL2 binding component 3	protein-coding	0.065000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-1888	chr5	8997181	8997381	+	0.10367	NA	promoter-TSS (NM_023733)	promoter-TSS (NM_023733)	-135	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.105000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-1803	chr4	99267165	99267365	+	0.10367	NA	Intergenic	Intergenic	73118	NM_001145967	242557	Mm.241663	NM_175029	ENSMUSG00000028550	Atg4c	Apg4-C|Apg4c|Atg4cl|Autl1	autophagy related 4C, cysteine peptidase	protein-coding	0.020000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-118	chr1	143852239	143852439	+	0.10367	NA	Intergenic	Intergenic	75061	NM_019562	56207	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0.015000	0.348259			-18(AGTTTATCATGAAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-460	chr11	99386461	99386661	+	0.10367	NA	exon (NM_010660, exon 6 of 8)	exon (NM_010660, exon 6 of 8)	2803	NM_010660	16661	Mm.22662	NM_010660	ENSMUSG00000019761	Krt10	D130054E02Rik|K10|K1C1|Krt-1.10|Krt1-10	keratin 10	protein-coding	0.045000	0.537313			
Oct4_nocontrol_ChIP_peaks_unique-249	chr17	74528050	74528250	+	0.10367	NA	promoter-TSS (NM_007566)	promoter-TSS (NM_007566)	-145	NM_007566	12211	Mm.442564	NM_007566	ENSMUSG00000024073	Birc6	A430032G04Rik|A430040A19Rik|AA501170|Bruce|D630005A10Rik|mKIAA1289	baculoviral IAP repeat-containing 6	protein-coding	0.075000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-381	chr11	45955318	45955518	+	0.10367	NA	promoter-TSS (NM_001290737)	promoter-TSS (NM_001290737)	85	NM_001080969	66628	Mm.269083	NM_001080969	ENSMUSG00000011254	Thg1l	-	tRNA-histidine guanylyltransferase 1-like (S. cerevisiae)	protein-coding	0.060000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-1436	chr2	107117812	107118012	+	0.10367	NA	Intergenic	Intergenic	-58261	NM_008045	14308	Mm.249525	NM_008045	ENSMUSG00000027120	Fshb	FSH|FSH-B|FSH-beta|Fshbeta	follicle stimulating hormone beta	protein-coding	0.005000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-1240	chr18	80151499	80151699	+	0.10367	NA	promoter-TSS (NM_175028)	promoter-TSS (NM_175028)	-117	NM_175028	240442	Mm.26594	NM_175028	ENSMUSG00000053950	Adnp2	8430420L05Rik|BC024969|Kiaa0863|Zfp508|mKIAA0863	ADNP homeobox 2	protein-coding	0.040000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-296	chr10	98185866	98186066	+	0.10367	NA	Intergenic	Intergenic	165901	NR_045179	667438	Mm.414522	NR_045179	ENSMUSG00000112896	Gm8633	EG667438	predicted gene 8633	ncRNA	0.005000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-726	chr13	107646048	107646248	+	0.10367	NA	Intergenic	Intergenic	-41249	NR_045900	72257	Mm.234155	NR_045900	ENSMUSG00000102000	1700006H21Rik	-	RIKEN cDNA 1700006H21 gene	ncRNA	0.050000	0.522388			0(TCTTTGCCTTCCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-80	chr1	87944337	87944537	+	0.10367	NA	TTS (NM_177646)	TTS (NM_177646)	64114	NM_001033291	227334	Mm.80484	NM_001033291	ENSMUSG00000005501	Usp40	B230215L03Rik|C730029K03	ubiquitin specific peptidase 40	protein-coding	0.005000	0.393035			-31(GTATTGTTATGTACAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1047	chr17	8372693	8372893	+	0.10367	NA	intron (NM_001161832, intron 1 of 10)	intron (NM_001161832, intron 1 of 10)	397	NM_001161832	21331	Mm.482744	NM_013682	ENSMUSG00000058159	T2	brachyury2	brachyury 2	protein-coding	0.025000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-1822	chr4	111444355	111444555	+	0.10367	NA	intron (NM_026279, intron 3 of 5)	intron (NM_026279, intron 3 of 5)	29449	NM_026279	67621	Mm.45533	NM_026279	ENSMUSG00000028545	Bend5	2310026E23Rik	BEN domain containing 5	protein-coding	0.010000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-1646	chr3	96696858	96697058	+	0.10367	NA	promoter-TSS (NM_001165949)	promoter-TSS (NM_001165949)	-118	NM_001165949	229615	Mm.1635	NM_018812	ENSMUSG00000028101	Pias3	Pias3l	protein inhibitor of activated STAT 3	protein-coding	0.115000	0.746269			
ePOU_nocontrol_ChIP_peaks_unique-1121	chr17	63673323	63673523	+	0.10367	NA	Intergenic	L1_Rod|LINE|L1	-172843	NM_015794	50758	Mm.136366	NM_015794	ENSMUSG00000023965	Fbxl17	6330576B01Rik|AI452053|BB073797|C130023C01Rik|Fbx13|Fbxo13	F-box and leucine-rich repeat protein 17	protein-coding	0.010000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-445	chr11	86416744	86416944	+	0.10367	NA	Intergenic	Tigger16b|DNA|TcMar-Tigger	-59248	NM_001080931	327987	Mm.341886	NM_001080931	ENSMUSG00000034297	Med13	1110067M05Rik|D030023K18|Thrap1|Trap240	mediator complex subunit 13	protein-coding	0.000000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-2512	chr9	45055194	45055394	+	0.10367	NA	exon (NM_001093749, exon 1 of 6)	exon (NM_001093749, exon 1 of 6)	113	NM_001093749	319742	Mm.49611	NM_176993	ENSMUSG00000070305	Mpzl3	5430427F17Rik|A530065I17Rik|rc|ruf	myelin protein zero-like 3	protein-coding	0.060000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-1748	chr4	43562241	43562441	+	0.10367	NA	promoter-TSS (NM_013497)	promoter-TSS (NM_013497)	242	NM_011602	21894	Mm.208601	NM_011602	ENSMUSG00000028465	Tln1	Tln	talin 1	protein-coding	0.100000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-1287	chr19	29037083	29037283	+	0.10367	NA	intron (NM_001365071, intron 2 of 4)	intron (NM_001365071, intron 2 of 4)	-10300	NR_028360	67329	Mm.394933	NR_028360		1700018L02Rik	-	RIKEN cDNA 1700018L02 gene	ncRNA	0.005000	0.472637			
Oct4_nocontrol_ChIP_peaks_unique-79	chr11	38468930	38469130	+	0.10367	NA	Intergenic	Lx9|LINE|L1	51015	NR_040295	100502917	Mm.61144	NR_040295		Gm12130	-	predicted gene 12130	ncRNA	0.000000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-832	chr14	121622250	121622450	+	0.10367	NA	exon (NM_001347596, exon 25 of 53)	exon (NM_001347596, exon 25 of 53)	76067	NM_001347596	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.010000	0.402985	-99(CTTGACTTATTCATT,+,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1383	chr2	58628961	58629161	+	0.10367	NA	intron (NM_001289660, intron 1 of 7)	MIRb|SINE|MIR	61727	NM_001289660	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.010000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-2203	chr7	34114467	34114667	+	0.10367	NA	intron (NM_207212, intron 7 of 7)	ORR1B1-int|LTR|ERVL-MaLR	18701	NM_207212	101543	Mm.422738	NM_207212	ENSMUSG00000036459	Wtip	-	WT1-interacting protein	protein-coding	0.000000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-2066	chr6	41565365	41565565	+	0.10367	NA	Intergenic	B4A|SINE|B4	-40017	NM_007680	13848	Mm.271976	NM_007680	ENSMUSG00000029869	Ephb6	Cekl|Mep	Eph receptor B6	protein-coding	0.000000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-1490	chr2	146823568	146823768	+	0.10367	NA	Intergenic	Intergenic	-32212	NM_001033298	228730	Mm.292352	NM_001033298	ENSMUSG00000074749	Kiz	Gm114|Ncrna00153|Plk1s1	kizuna centrosomal protein	protein-coding	0.020000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-2590	chr9	106476819	106477019	+	0.10367	NA	promoter-TSS (NM_145619)	promoter-TSS (NM_145619)	30	NM_145619	235587	Mm.273659	NM_145619	ENSMUSG00000023249	Parp3	A930002C11Rik|ADPRT-3|ARTD3|AW990611|Adprt3|Adprtl3|PARP-3|pADPRT-3	poly (ADP-ribose) polymerase family, member 3	protein-coding	0.030000	0.477612			
merged_common-724	chr6	149260957	149261157	+	0.10367	NA	Intergenic	Intergenic	-48357	NM_026054	67246	Mm.333515	NM_026054	ENSMUSG00000032712	Resf1	2810474O19Rik|6720435I21Rik|AA536804|AU020969|GET	retroelement silencing factor 1	protein-coding	0.005000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-313	chr10	114643357	114643557	+	0.10367	NA	intron (NM_146241, intron 3 of 18)	L1MB8|LINE|L1	157913	NM_146241	237553	Mm.445550	NM_146241	ENSMUSG00000050663	Trhde	9330155P21Rik	TRH-degrading enzyme	protein-coding	0.010000	0.388060		58(CATGAATATTCAAC,+,0.00),58(CATGAATATTCAAC,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-370	chr11	37154102	37154302	+	0.10367	NA	Intergenic	Intergenic	-209961	NM_001290702	23964	Mm.439889	NM_011856	ENSMUSG00000049336	Tenm2	Odz2|Odz3|Ten-2|Ten-m2	teneurin transmembrane protein 2	protein-coding	0.015000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-227	chr10	39231226	39231426	+	0.10367	NA	Intergenic	Intergenic	-67532	NM_001127376	327743	Mm.208111	NM_001127376	ENSMUSG00000062074	Ccn6	Gm735|WISP-3|Wisp3	cellular communication network factor 6	protein-coding	0.020000	0.477612			-59(CCAGTGCCTTTCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-780	chr14	52104034	52104234	+	0.10367	NA	promoter-TSS (NM_001360172)	promoter-TSS (NM_001360172)	-113	NM_001360176	15381	Mm.427321	NM_016884	ENSMUSG00000060373	Hnrnpc	AL022939|D14Wsu171e|Hnrpc|Hnrpc1|Hnrpc2|hnRNPC1|hnRNPC2|hnrnp-C	heterogeneous nuclear ribonucleoprotein C	protein-coding	0.060000	0.517413			
Oct4_nocontrol_ChIP_peaks_unique-13	chr1	64617454	64617654	+	0.10367	NA	5' UTR (NM_001368283, exon 1 of 4)	5' UTR (NM_001368283, exon 1 of 4)	210	NM_001368284	67099	Mm.46394	NM_025964	ENSMUSG00000025956	Mettl21a	2310038H17Rik|AI464204|Fam119a	methyltransferase like 21A	protein-coding	0.120000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-2244	chr7	80861052	80861252	+	0.10367	NA	promoter-TSS (NM_009553)	promoter-TSS (NM_009553)	-956	NM_009553	22691	Mm.358645	NM_009553	ENSMUSG00000038797	Zscan2	Zfp-29|Zfp29	zinc finger and SCAN domain containing 2	protein-coding	0.110000	0.716418			
Oct4_nocontrol_ChIP_peaks_unique-447	chr6	99522727	99522927	+	0.10367	NA	Intergenic	CpG-12329	-1834	NM_001347345	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.145000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-889	chr15	64590223	64590423	+	0.10367	NA	Intergenic	MLT1L|LTR|ERVL-MaLR	-207404	NM_001276467	13196	Mm.277236	NM_010026	ENSMUSG00000022377	Asap1	AV239055|DEF-1|Ddef1|PAP|mKIAA1249|s19	ArfGAP with SH3 domain, ankyrin repeat and PH domain1	protein-coding	0.000000	0.437811			20(TCATTATTTTGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-308	chr10	110795021	110795221	+	0.10367	NA	Intergenic	Intergenic	49682	NM_001358560	52679	Mm.11747	NM_178609	ENSMUSG00000020185	E2f7	A630014C11Rik|D10Ertd739e|E2F-7	E2F transcription factor 7	protein-coding	0.015000	0.417910			
Oct4_nocontrol_ChIP_peaks_unique-441	chr6	86297022	86297222	+	0.10367	NA	Intergenic	B1F|SINE|Alu	-68349	NM_001368363	66488	Mm.422972	NM_025591	ENSMUSG00000057497	Fam136a	2010309E21Rik|AW124904|Hyccin	family with sequence similarity 136, member A	protein-coding	0.005000	0.517413			
ePOU_nocontrol_ChIP_peaks_unique-390	chr11	53891594	53891794	+	0.10367	NA	promoter-TSS (NM_011396)	promoter-TSS (NM_011396)	9	NM_001362712	20520	Mm.42253	NM_011396	ENSMUSG00000018900	Slc22a5	Lstpl|Octn2|jvs	solute carrier family 22 (organic cation transporter), member 5	protein-coding	0.125000	0.766169			
ePOU_nocontrol_ChIP_peaks_unique-673	chr13	54504374	54504574	+	0.10367	NA	intron (NM_176987, intron 1 of 9)	CpG	669	NM_176987	319719	Mm.376151	NM_176987	ENSMUSG00000043183	Simc1	4732471D19Rik	SUMO-interacting motifs containing 1	protein-coding	0.050000	0.552239			63(ATTTTGCTTTGCAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-618	chr12	112976510	112976710	+	0.10367	NA	promoter-TSS (NM_201646)	promoter-TSS (NM_201646)	47	NM_201646	399566	Mm.440140	NM_201646	ENSMUSG00000002803	Btbd6	-	BTB (POZ) domain containing 6	protein-coding	0.125000	0.771144			
ePOU_nocontrol_ChIP_peaks_unique-1206	chr18	54057845	54058045	+	0.10367	NA	Intergenic	Intergenic	195832	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.010000	0.328358	-90(TATGCATTTTTAATG,-,0.00)	-96(TATGGATATGCATT,+,0.00),-96(TATGGATATGCATT,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-152	chr13	75524070	75524270	+	0.10367	NA	Intergenic	Intergenic	-120876	NR_030451	751556		NR_030451	ENSMUSG00000076236	Mir682	Mirn682|mir-682|mmu-mir-682	microRNA 682	ncRNA	0.005000	0.477612			-28(TCATTGTTATGCAGAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1876	chr4	153951603	153951803	+	0.10367	NA	Intergenic	Intergenic	-1227	NR_040670	407793	Mm.260950	NR_040670		BC039966	-	cDNA sequence BC039966	ncRNA	0.010000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-1926	chr5	44181032	44181232	+	0.10367	NA	intron (NM_173764, intron 12 of 13)	intron (NM_173764, intron 12 of 13)	45474	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.005000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-1030	chr16	82592156	82592356	+	0.10367	NA	Intergenic	Intergenic	1391559	NM_001113208	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.010000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-2362	chr8	36094729	36094929	+	0.10367	NA	promoter-TSS (NM_172911)	promoter-TSS (NM_172911)	1	NM_172911	244418	Mm.244971	NM_172911	ENSMUSG00000050271	Prag1	9830148H23|D8Ertd82e|NACK|Sgk223|mFLJ00269	PEAK1 related kinase activating pseudokinase 1	protein-coding	0.145000	0.766169			
ePOU_nocontrol_ChIP_peaks_unique-972	chr16	22857575	22857775	+	0.10367	NA	promoter-TSS (NM_001190805)	promoter-TSS (NM_001190805)	-6	NM_001316746	70573	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding	0.095000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-41	chr1	58335480	58335680	+	0.10367	NA	intron (NM_001008419, intron 23 of 35)	intron (NM_001008419, intron 23 of 35)	57254	NM_001008419	213043	Mm.414292	NM_001008419	ENSMUSG00000079554	Aox2	Aoh3|Aox3l1	aldehyde oxidase 2	protein-coding	0.005000	0.328358			
Oct4_nocontrol_ChIP_peaks_unique-29	chr1	145382370	145382570	+	0.10367	NA	Intergenic	Intergenic	-607043	NM_022881	64214	Mm.253927	NM_022881	ENSMUSG00000026357	Rgs18	-	regulator of G-protein signaling 18	protein-coding	0.000000	0.368159			
Oct4_nocontrol_ChIP_peaks_unique-248	chr17	65613754	65613954	+	0.10367	NA	promoter-TSS (NM_013933)	promoter-TSS (NM_013933)	-299	NM_001355402	30960	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.125000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-2524	chr9	54863728	54863928	+	0.10367	NA	promoter-TSS (NM_022655)	promoter-TSS (NM_022655)	73	NM_022655	64602	Mm.208991	NM_022655	ENSMUSG00000032293	Ireb2	D9Ertd85e|Irp2	iron responsive element binding protein 2	protein-coding	0.090000	0.696517			
Oct4_nocontrol_ChIP_peaks_unique-388	chr4	59549224	59549424	+	0.10367	NA	promoter-TSS (NM_144904)	promoter-TSS (NM_144904)	40	NM_178164	230257	Mm.331640	NM_144904	ENSMUSG00000028382	Ptbp3	5830471K22Rik|AA407443|AI462022|AW107884|C86549|Rod1	polypyrimidine tract binding protein 3	protein-coding	0.145000	0.781095			
ePOU_nocontrol_ChIP_peaks_unique-1272	chr19	16386678	16386878	+	0.10367	NA	3' UTR (NM_008139, exon 7 of 7)	3' UTR (NM_008139, exon 7 of 7)	-48889	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.020000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-683	chr13	69611743	69611943	+	0.10367	NA	promoter-TSS (NM_145354)	promoter-TSS (NM_145354)	-173	NM_145354	28114	Mm.260009	NM_145354	ENSMUSG00000021595	Nsun2	D13Wsu123e|Misu	NOL1/NOP2/Sun domain family member 2	protein-coding	0.065000	0.527363			
Oct4_nocontrol_ChIP_peaks_unique-218	chr15	93519271	93519471	+	0.10367	NA	5' UTR (NM_001364846, exon 1 of 8)	5' UTR (NM_001364846, exon 1 of 8)	149	NM_001364846	106042	Mm.150314	NM_001033217	ENSMUSG00000036158	Prickle1	1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1	prickle planar cell polarity protein 1	protein-coding	0.145000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-437	chr11	79704326	79704526	+	0.10367	NA	Intergenic	CpG	-7543	NR_029579	387188		NR_029579	ENSMUSG00000065395	Mir193a	Mir193|Mirn193|mir-193a|mmu-mir-193|mmu-mir-193a	microRNA 193a	ncRNA	0.110000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-1368	chr2	38823892	38824092	+	0.10367	NA	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	-28743	NR_029568	387176		NR_029568	ENSMUSG00000065423	Mir181a-2	Mirn181|Mirn181a|Mirn181a-2|miR-181|mir-181a|mir-181a-2	microRNA 181a-2	ncRNA	0.030000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-122	chr1	150393035	150393235	+	0.10367	NA	promoter-TSS (NM_001077237)	promoter-TSS (NM_001077237)	-55	NM_001357579	226499	Mm.222093	NM_145511	ENSMUSG00000006010	Odr4	1810053E15Rik|odr-4	odr4 GPCR localization factor homolog	protein-coding	0.085000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-1941	chr5	74012276	74012476	+	0.10367	NA	intron (NM_177561, intron 5 of 8)	L1MA4A|LINE|L1	56035	NM_177561	69727	Mm.48795	NM_177561	ENSMUSG00000054814	Usp46	1190009E20Rik|2410018I08Rik|AI451644	ubiquitin specific peptidase 46	protein-coding	0.005000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-774	chr14	48778666	48778866	+	0.10367	NA	intron (NR_029384, intron 4 of 4)	(CAATA)n|Simple_repeat|Simple_repeat	-100107	NR_033783	66770	Mm.136954	NR_033783	ENSMUSG00000115008	4933429O19Rik	1700031B11Rik	RIKEN cDNA 4933429O19 gene	ncRNA	0.005000	0.263682			
ePOU_nocontrol_ChIP_peaks_unique-2407	chr8	71951404	71951604	+	0.10367	NA	intron (NM_001164581, intron 1 of 3)	B1_Mus2|SINE|Alu	438	NM_001164581	234413	Mm.334607	NM_001164581	ENSMUSG00000052446	Zfp961	A230105L22Rik|BC065788|mszf37|mszf55-2	zinc finger protein 961	protein-coding	0.035000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-847	chr15	20767115	20767315	+	0.10367	NA	Intergenic	Intergenic	-100465	NM_022816	64833	Mm.352763	NM_022816	ENSMUSG00000047565	Acot10	Acate3|MT-ACT48|p48	acyl-CoA thioesterase 10	protein-coding	0.005000	0.318408			54(CCTTTGACATTGAAAT,+,0.00),77(TTTTGAATGATAAAGG,-,0.00)
merged_common-164	chr11	88629878	88630078	+	0.10367	NA	intron (NM_054043, intron 5 of 13)	intron (NM_054043, intron 5 of 13)	10727	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.015000	0.497512			16(ATTTGCACACGAATAA,-,0.00)
merged_common-758	chr7	118593860	118594060	+	0.10367	NA	intron (NM_001331203, intron 1 of 2)	intron (NM_001331203, intron 1 of 2)	1514	NM_001331204	381914	Mm.291232	NM_001331201	ENSMUSG00000109284	B230311B06Rik	Gm1695	RIKEN cDNA B230311B06 gene	protein-coding	0.010000	0.497512			-24(TCTTTCATATGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2639	chrX	98937984	98938184	+	0.10367	NA	5' UTR (NM_207633, exon 1 of 7)	5' UTR (NM_207633, exon 1 of 7)	303	NM_207633	77929	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	0.130000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-1424	chr2	102898194	102898394	+	0.10367	NA	intron (NM_001039150, intron 1 of 13)	L1Md_F2|LINE|L1	3371	NM_001177787	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.010000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-2583	chr9	103146829	103147029	+	0.10367	NA	intron (NM_173781, intron 2 of 7)	intron (NM_173781, intron 2 of 7)	34855	NM_173781	270192	Mm.490252	NM_173781	ENSMUSG00000032549	Rab6b	9630015C03|AI844641|C330006L04Rik|D9Bwg0185e	RAB6B, member RAS oncogene family	protein-coding	0.015000	0.487562			-40(TCATTTGCATGCTAAT,+,0.00),-38(ATTTGCATGCTAATTT,-,0.00),-26(ATTTGCATAACTTTAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-274	chr10	81384205	81384405	+	0.10367	NA	promoter-TSS (NM_133964)	promoter-TSS (NM_133964)	-123	NM_133964	102115	Mm.294975	NM_133964	ENSMUSG00000078440	Dohh	1110033C18Rik|AI585913|AL022869|Hlrc1	deoxyhypusine hydroxylase/monooxygenase	protein-coding	0.080000	0.582090			
ePOU_nocontrol_ChIP_peaks_unique-845	chr15	13859503	13859703	+	0.10367	NA	Intergenic	Intergenic	-685928	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.005000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-562	chr12	69108044	69108244	+	0.10367	NA	Intergenic	Intergenic	51042	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0.010000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-900	chr15	76976522	76976722	+	0.10367	NA	Intergenic	MMERGLN-int|LTR|ERV1	28361	NM_054099	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.015000	0.497512			
Oct4_nocontrol_ChIP_peaks_unique-27	chr1	138619496	138619696	+	0.10367	NA	5' UTR (NM_021605, exon 1 of 10)	5' UTR (NM_021605, exon 1 of 10)	161	NM_001311148	59125	Mm.143817	NM_021605	ENSMUSG00000026393	Nek7	2810460C19Rik|AU020186	NIMA (never in mitosis gene a)-related expressed kinase 7	protein-coding	0.145000	0.786070			
ePOU_nocontrol_ChIP_peaks_unique-1236	chr18	77773929	77774129	+	0.10367	NA	promoter-TSS (NM_001357533)	promoter-TSS (NM_001357533)	-144	NM_001357532	225745	Mm.39293	NM_146089	ENSMUSG00000041840	Haus1	BC024400|Ccdc5|HEI-C	HAUS augmin-like complex, subunit 1	protein-coding	0.105000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-131	chr1	156719005	156719205	+	0.10367	NA	promoter-TSS (NM_145413)	promoter-TSS (NM_145413)	-195	NM_145413	215015	Mm.229107	NM_145413	ENSMUSG00000033557	Fam20b	C530043G21Rik|mKIAA0475	family with sequence similarity 20, member B	protein-coding	0.135000	0.776119			
ePOU_nocontrol_ChIP_peaks_unique-582	chr12	80223591	80223791	+	0.10367	NA	intron (NM_134156, intron 1 of 20)	intron (NM_134156, intron 1 of 20)	36680	NM_134156	109711	Mm.253564	NM_134156	ENSMUSG00000015143	Actn1	3110023F10Rik|Actn1a	actinin, alpha 1	protein-coding	0.010000	0.552239	-59(AATGAATAATTAAAG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2158	chr6	128200678	128200878	+	0.10367	NA	Intergenic	CpG	-16975	NR_077223	330427	Mm.426356	NR_077223	ENSMUSG00000107879	9330102E08Rik	-	RIKEN cDNA 9330102E08 gene	ncRNA	0.065000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-1645	chr3	96220913	96221113	+	0.10367	NA	promoter-TSS (NM_178214)	promoter-TSS (NM_178214)	-59	NM_178214	319190	Mm.439791	NM_178214	ENSMUSG00000068854	Hist2h2be	AV127319|H2b-613|T25626	histone cluster 2, H2be	protein-coding	0.030000	0.462687			
Oct4_nocontrol_ChIP_peaks_unique-225	chr16	22265878	22266078	+	0.10367	NA	promoter-TSS (NM_009186)	promoter-TSS (NM_009186)	27	NM_001330554	20462	Mm.210352	NM_009186	ENSMUSG00000022858	Tra2b	5730405G21Rik|D16Ertd266e|SIG-41|Sfrs10|Silg41|TRA2beta	transformer 2 beta	protein-coding	0.110000	0.651741			
merged_common-604	chr4	98728146	98728346	+	0.10367	NA	intron (NM_001081202, intron 2 of 4)	intron (NM_001081202, intron 2 of 4)	1492	NM_001081202	381591	Mm.34340	NM_001081202	ENSMUSG00000087166	L1td1	AA546746|AB211064|D76865|ECAT11	LINE-1 type transposase domain containing 1	protein-coding	0.010000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-456	chr11	97188218	97188418	+	0.10367	NA	promoter-TSS (NM_008379)	promoter-TSS (NM_008379)	-426	NM_008379	16211	Mm.251013	NM_008379	ENSMUSG00000001440	Kpnb1	AA409963|IPOB|Impnb	karyopherin (importin) beta 1	protein-coding	0.130000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-1815	chr4	106301604	106301804	+	0.10367	NA	Intergenic	Intergenic	-14509	NM_183225	329908	Mm.234544	NM_183225	ENSMUSG00000028514	Usp24	2700066K03Rik|2810030C21Rik|AI414051|B130021E18|C79851	ubiquitin specific peptidase 24	protein-coding	0.005000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-1128	chr17	71615989	71616189	+	0.10367	NA	promoter-TSS (NM_175639)	promoter-TSS (NM_175639)	-126	NM_175639	72515	Mm.257762	NM_175639	ENSMUSG00000041057	Wdr43	2610318G08Rik|AU020887|AV024208|Wrd43|mKIAA0007	WD repeat domain 43	protein-coding	0.060000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-1074	chr17	25240134	25240334	+	0.10367	NA	promoter-TSS (NM_026676)	promoter-TSS (NM_026676)	64	NM_026676	68327	Mm.180687	NM_026676	ENSMUSG00000015126	Tsr3	0610007P22Rik|1110014B11Rik|AL022759	TSR3 20S rRNA accumulation	protein-coding	0.100000	0.577114			
ePOU_nocontrol_ChIP_peaks_unique-2246	chr7	81345179	81345379	+	0.10367	NA	promoter-TSS (NM_009092)	promoter-TSS (NM_009092)	-45	NM_009092	20068	Mm.42767	NM_009092	ENSMUSG00000061787	Rps17	-	ribosomal protein S17	protein-coding	0.085000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-1640	chr3	95806198	95806398	+	0.10367	NA	intron (NM_028328, intron 1 of 8)	B1_Mus2|SINE|Alu	12655	NM_001081293	75137	Mm.196275	NM_028328	ENSMUSG00000028106	Rprd2	2810036A19Rik|4930535B03Rik|6720469I21Rik|AL022841|AL022940|AU021304|BB077382|mKIAA0460	regulation of nuclear pre-mRNA domain containing 2	protein-coding	0.030000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-447	chr11	86671379	86671579	+	0.10367	NA	promoter-TSS (NM_001356531)	promoter-TSS (NM_001356531)	-204	NM_001356531	75909	Mm.390398	NM_029478	ENSMUSG00000018171	Vmp1	3110098I04Rik|4930579A11Rik|AI787464|Tango5|Tmem49|mir-21a|ni-2	vacuole membrane protein 1	protein-coding	0.010000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-293	chr10	96847048	96847248	+	0.10367	NA	Intergenic	Intergenic	-188620	NR_045358	75301	Mm.108650	NR_045358	ENSMUSG00000111924	4930556N09Rik	-	RIKEN cDNA 4930556N09 gene	ncRNA	0.005000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-1025	chr16	73341905	73342105	+	0.10367	NA	Intergenic	Intergenic	678856	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.000000	0.358209			
Oct4_nocontrol_ChIP_peaks_unique-212	chr15	79658882	79659082	+	0.10367	NA	promoter-TSS (NM_029407)	promoter-TSS (NM_029407)	-26	NM_029407	75729	Mm.78946	NM_029407	ENSMUSG00000042564	Fam227a	4933432B09Rik	family with sequence similarity 227, member A	protein-coding	0.055000	0.542289			
ePOU_nocontrol_ChIP_peaks_unique-767	chr14	36968487	36968687	+	0.10367	NA	5' UTR (NM_027045, exon 1 of 11)	5' UTR (NM_027045, exon 1 of 11)	177	NM_027045	72972	Mm.27621	NM_027045	ENSMUSG00000058690	Ccser2	1700012P13Rik|2900054P12Rik|AI035535|AW108503|Fam190b|Gcap14	coiled-coil serine rich 2	protein-coding	0.120000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-2439	chr8	92258381	92258581	+	0.10367	NA	Intergenic	Intergenic	97639	NR_033641	71296	Mm.86664	NR_033641	ENSMUSG00000031736	Crnde	4933436C20Rik	colorectal neoplasia differentially expressed (non-protein coding)	ncRNA	0.020000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-292	chr10	96285828	96286028	+	0.10367	NA	Intergenic	Intergenic	59721	NR_110448	74881	Mm.410819	NR_110448	ENSMUSG00000112762	4930459C07Rik	-	RIKEN cDNA 4930459C07 gene	ncRNA	0.015000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-420	chr11	67486687	67486887	+	0.10367	NA	Intergenic	Intergenic	-46211	NM_008088	14457	Mm.40338	NM_008088	ENSMUSG00000033066	Gas7	AW124766|B230343A10Rik|Gas7-cb	growth arrest specific 7	protein-coding	0.000000	0.363184		67(TGTGCATATGTATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-403	chr11	60830540	60830740	+	0.10367	NA	promoter-TSS (NM_145428)	promoter-TSS (NM_145428)	9	NM_145428	216820	Mm.21475	NM_145428	ENSMUSG00000042569	Dhrs7b	BC003479|C79874|C80074|PexRAP	dehydrogenase/reductase (SDR family) member 7B	protein-coding	0.055000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-2315	chr7	128550360	128550560	+	0.10367	NA	Intergenic	MIR|SINE|MIR	26877	NM_013863	29810	Mm.84073	NM_013863	ENSMUSG00000030847	Bag3	AA407278|Bis|mg638	BCL2-associated athanogene 3	protein-coding	0.000000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-2473	chr8	126502902	126503102	+	0.10367	NA	Intergenic	Intergenic	-27937	NM_001159907	212728	Mm.482479	NM_001159907	ENSMUSG00000090290	Tarbp1	Gm17296|Gm179	TAR RNA binding protein 1	protein-coding	0.005000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-1392	chr2	69753684	69753884	+	0.10367	NA	3' UTR (NM_001081086, exon 14 of 14)	3' UTR (NM_001081086, exon 14 of 14)	30696	NM_001081086	228005	Mm.11815	NM_001081086	ENSMUSG00000042133	Ppig	AU019516|AU022200|B230312B02Rik|CYP|SRCyp	peptidyl-prolyl isomerase G (cyclophilin G)	protein-coding	0.000000	0.333333			21(TCACTGTGATGTATAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-479	chr7	102200756	102200956	+	0.10367	NA	intron (NM_022979, intron 1 of 22)	intron (NM_022979, intron 1 of 22)	9011	NM_001287167	269966	Mm.439800	NM_022979	ENSMUSG00000063550	Nup98	4732457F17|AI849286|Nup96	nucleoporin 98	protein-coding	0.010000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-1192	chr18	40219341	40219541	+	0.10367	NA	promoter-TSS (NM_023311)	promoter-TSS (NM_023311)	-42	NM_023311	67180	Mm.270382	NM_023311	ENSMUSG00000024487	Yipf5	2610311I19Rik|AA408236|Yip1a	Yip1 domain family, member 5	protein-coding	0.115000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-2352	chr8	23596427	23596627	+	0.10367	NA	Intergenic	L3|LINE|CR1	-73134	NM_001277239	320158	Mm.121274	NM_177086	ENSMUSG00000037492	Zmat4	9630048M01Rik	zinc finger, matrin type 4	protein-coding	0.030000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-1514	chr2	164879754	164879954	+	0.10367	NA	intron (NM_146129, intron 1 of 16)	CpG	486	NM_146129	228866	Mm.241134	NM_146129	ENSMUSG00000039849	Pcif1	2310022K11Rik|C20orf67|CAPAM|F730014I05Rik	PDX1 C-terminal inhibiting factor 1	protein-coding	0.140000	0.810945			
ePOU_nocontrol_ChIP_peaks_unique-1176	chr18	31609587	31609787	+	0.10367	NA	exon (NM_026165, exon 1 of 8)	exon (NM_026165, exon 1 of 8)	243	NM_026165	67453	Mm.23896	NM_026165	ENSMUSG00000024259	Slc25a46	1200007B05Rik|AI325987	solute carrier family 25, member 46	protein-coding	0.125000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-1899	chr5	24039327	24039527	+	0.10367	NA	Intergenic	Intergenic	-8737	NM_053090	84652	Mm.304976	NM_053090	ENSMUSG00000028995	Fam126a	AB030242|Drctnnb1a	family with sequence similarity 126, member A	protein-coding	0.000000	0.512438			
ePOU_nocontrol_ChIP_peaks_unique-2503	chr9	31890560	31890760	+	0.10367	NA	intron (NM_013800, intron 1 of 3)	intron (NM_013800, intron 1 of 3)	22625	NM_013800	12023	Mm.261044	NM_013800	ENSMUSG00000032033	Barx2	2310006E12Rik|Barx2b	BarH-like homeobox 2	protein-coding	0.000000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-2415	chr8	77310687	77310887	+	0.10367	NA	exon (NM_030113, exon 19 of 23)	exon (NM_030113, exon 19 of 23)	141302	NM_001363419	78514	Mm.165974	NM_030113	ENSMUSG00000037148	Arhgap10	A930033B01Rik|PS-GAP|PSGAP|PSGAP-m|PSGAP-s	Rho GTPase activating protein 10	protein-coding	0.040000	0.552239			
ePOU_nocontrol_ChIP_peaks_unique-2307	chr7	126884662	126884862	+	0.10367	NA	5' UTR (NM_001163775, exon 1 of 16)	5' UTR (NM_001163775, exon 1 of 16)	205	NM_001163774	381921	Mm.259634	NM_001163774	ENSMUSG00000059981	Taok2	1110033K02Rik|B230344N16|MAP3K17|PSK|PSK1|TAO1|TAO2|mKIAA0881	TAO kinase 2	protein-coding	0.110000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-1962	chr5	100968084	100968284	+	0.10367	NA	Intergenic	Intergenic	121955	NM_172715	231510	Mm.271911	NM_172715	ENSMUSG00000029314	Gpat3	1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3	glycerol-3-phosphate acyltransferase 3	protein-coding	0.015000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-84	chr1	89070399	89070599	+	0.10367	NA	promoter-TSS (NM_133816)	promoter-TSS (NM_133816)	84	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.130000	0.766169			
ePOU_nocontrol_ChIP_peaks_unique-367	chr11	35935857	35936057	+	0.10367	NA	intron (NM_170779, intron 1 of 22)	intron (NM_170779, intron 1 of 22)	44570	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra	WW, C2 and coiled-coil domain containing 1	protein-coding	0.000000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-748	chr14	18167322	18167522	+	0.10367	NA	Intergenic	Intergenic	71684	NM_011584	353187	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.000000	0.313433			
ePOU_nocontrol_ChIP_peaks_unique-1982	chr5	115177569	115177769	+	0.10367	NA	intron (NM_001310712, intron 1 of 5)	MER2|DNA|TcMar-Tigger	8452	NM_013879	29867	Mm.38551	NM_013879	ENSMUSG00000029544	Cabp1	caldendrin	calcium binding protein 1	protein-coding	0.015000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-2068	chr6	43340199	43340399	+	0.10367	NA	Intergenic	Intergenic	-30745	NM_130869	18291	Mm.17715	NM_130869	ENSMUSG00000029736	Nobox	OG2|Og2x	NOBOX oogenesis homeobox	protein-coding	0.000000	0.253731			-18(TTTTTGTGATGTAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1157	chr18	5411433	5411633	+	0.10367	NA	Intergenic	Intergenic	-76726	NM_001360447	240186	Mm.118257	NM_178722	ENSMUSG00000050945	Zfp438	9430031G09|9430091M14Rik|B830013J05Rik	zinc finger protein 438	protein-coding	0.005000	0.437811	-36(CATTCATATTTCATG,+,0.00),-36(CATTCATATTTCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2428	chr8	85729411	85729611	+	0.10367	NA	intron (NM_028007, intron 14 of 17)	intron (NM_028007, intron 14 of 17)	-28587	NM_001357287	74513	Mm.126079	NM_001081324	ENSMUSG00000036902	Neto2	5530601C23Rik|AI854825|BTCL2	neuropilin (NRP) and tolloid (TLL)-like 2	protein-coding	0.015000	0.348259			-94(ATTTGAATCATAAAGT,-,0.00),-47(ATTTACATGATAGCAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1301	chr19	42518572	42518772	+	0.10367	NA	promoter-TSS (NM_177464)	promoter-TSS (NM_177464)	-133	NM_177464	52013	Mm.254169	NM_177464	ENSMUSG00000025184	R3hcc1l	1700036B12Rik|AI450607|C10orf28|D19Ertd386e|GIDRP86|Gidrp88	R3H domain and coiled-coil containing 1 like	protein-coding	0.095000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-1648	chr3	97658240	97658440	+	0.10367	NA	5' UTR (NM_182997, exon 1 of 8)	5' UTR (NM_182997, exon 1 of 8)	128	NM_182997	108097	Mm.31175	NM_182997	ENSMUSG00000038205	Prkab2	5730553K21Rik|AW049591|BB124140	protein kinase, AMP-activated, beta 2 non-catalytic subunit	protein-coding	0.115000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-2035	chr6	14180086	14180286	+	0.10367	NA	Intergenic	Intergenic	308617	NR_045995	76311	Mm.367129	NR_045995	ENSMUSG00000097616	1110019D14Rik	-	RIKEN cDNA 1110019D14 gene	ncRNA	0.005000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-561	chr12	68718258	68718458	+	0.10367	NA	Intergenic	L1MA9|LINE|L1	440828	NM_009093	20090	Mm.379006	NM_009093	ENSMUSG00000034892	Rps29	-	ribosomal protein S29	protein-coding	0.010000	0.283582			
merged_common-574	chr4	14834484	14834684	+	0.10367	NA	Intergenic	L1_Mus3|LINE|L1	-8171	NM_152812	72201	Mm.387724	NM_152812	ENSMUSG00000040550	Otud6b	2600013N14Rik|AU015433	OTU domain containing 6B	protein-coding	0.000000	0.338308			-18(ATGTACAAAACAAAGA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-96	chr11	98763119	98763319	+	0.10367	NA	intron (NM_178060, intron 7 of 8)	(CA)n|Simple_repeat|Simple_repeat	12158	NM_145434	217166	Mm.390397	NM_145434	ENSMUSG00000020889	Nr1d1	A530070C09Rik|R75201	nuclear receptor subfamily 1, group D, member 1	protein-coding	0.005000	0.457711			
Oct4_nocontrol_ChIP_peaks_unique-514	chr8	84832150	84832350	+	0.10367	NA	promoter-TSS (NR_033145)	promoter-TSS (NR_033145)	15	NR_033145	23863	Mm.304252	NM_201227	ENSMUSG00000053226	Dand5	Cerl-2|Cerl2|Cerr2|Dte|GREM3|coco	DAN domain family member 5, BMP antagonist	protein-coding	0.125000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-2421	chr8	82943866	82944066	+	0.10367	NA	intron (NM_177378, intron 1 of 6)	intron (NM_177378, intron 1 of 6)	80610	NM_177378	330812	Mm.491438	NM_177378	ENSMUSG00000047747	Rnf150	A630007N06Rik|C030044C12Rik|Greul5|mKIAA1214	ring finger protein 150	protein-coding	0.000000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-557	chr12	65036307	65036507	+	0.10367	NA	promoter-TSS (NM_177806)	promoter-TSS (NM_177806)	73	NM_177806	328110	Mm.283339	NM_177806	ENSMUSG00000035597	Prpf39	Srcs1	pre-mRNA processing factor 39	protein-coding	0.115000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-326	chr10	121501125	121501325	+	0.10367	NA	Intergenic	MER58A|DNA|hAT-Charlie	-24975	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.015000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-276	chr10	82048156	82048356	+	0.10367	NA	intron (NM_001024626, intron 1 of 2)	CpG	129	NM_001024626	408062	Mm.391409	NM_001024626	ENSMUSG00000061371	Zfp873	-	zinc finger protein 873	protein-coding	0.085000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-796	chr14	70074734	70074934	+	0.10367	NA	Intergenic	CpG	-2483	NM_018781	13655	Mm.103737	NM_018781	ENSMUSG00000033730	Egr3	Pilot	early growth response 3	protein-coding	0.045000	0.601990			
Oct4_nocontrol_ChIP_peaks_unique-356	chr3	90362041	90362241	+	0.10367	NA	TTS (NM_139304)	TTS (NM_139304)	20487	NM_139304	229542	Mm.270999	NM_139304	ENSMUSG00000042390	Gatad2b	AL118180|C430014D17Rik|P66beta|mKIAA1150	GATA zinc finger domain containing 2B	protein-coding	0.005000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-979	chr16	25465816	25466016	+	0.10367	NA	Intergenic	Intergenic	179099	NM_175165	71338	Mm.126851	NM_175165	ENSMUSG00000048399	Tprg	5430420C16Rik|Tprg1	transformation related protein 63 regulated	protein-coding	0.010000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-609	chr12	102806719	102806919	+	0.10367	NA	intron (NM_172806, intron 7 of 11)	L1MA6|LINE|L1	48844	NM_025666	66622	Mm.34261	NM_025666	ENSMUSG00000041712	Ubr7	5730410I19Rik|AA589405|AW557761	ubiquitin protein ligase E3 component n-recognin 7 (putative)	protein-coding	0.000000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-2457	chr8	111876676	111876876	+	0.10367	NA	promoter-TSS (NM_025781)	promoter-TSS (NM_025781)	-101	NM_025781	66817	Mm.345350	NM_025781	ENSMUSG00000031953	Tmem170	9030409E16Rik|AA403674|D8Bwg1414e|Tmem170a	transmembrane protein 170	protein-coding	0.090000	0.631841			
merged_common-809	chr8	109778591	109778791	+	0.10367	NA	5' UTR (NM_001301211, exon 1 of 23)	5' UTR (NM_001301211, exon 1 of 23)	108	NM_001301211	11765	Mm.37210	NM_009677	ENSMUSG00000031731	Ap1g1	AA409002|AU041323|AW551707|Adtg|D8Ertd374e	adaptor protein complex AP-1, gamma 1 subunit	protein-coding	0.140000	0.731343			
ePOU_nocontrol_ChIP_peaks_unique-2126	chr6	98924968	98925168	+	0.10367	NA	TTS (NM_001347345)	TTS (NM_001347345)	103230	NM_001197322	108655	Mm.234965	NM_053202	ENSMUSG00000030067	Foxp1	3110052D19Rik|4932443N09Rik|AI461938|AW494214	forkhead box P1	protein-coding	0.010000	0.328358	-20(AATGAATTATTCATG,+,0.00),-20(AATGAATTATTCATG,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-427	chr5	140649107	140649307	+	0.10367	NA	promoter-TSS (NM_001308040)	promoter-TSS (NM_001308040)	-176	NM_175274	78339	Mm.28947	NM_175274	ENSMUSG00000036565	Ttyh3	2900029G13Rik|AI414930|TTY3|mTTY3	tweety family member 3	protein-coding	0.050000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-1428	chr2	103617765	103617965	+	0.10367	NA	intron (NM_178890, intron 1 of 16)	intron (NM_178890, intron 1 of 16)	51555	NM_178890	99382	Mm.35850	NM_178890	ENSMUSG00000032724	Abtb2	AW539457|BPOZ-2	ankyrin repeat and BTB (POZ) domain containing 2	protein-coding	0.010000	0.482587			
Oct4_nocontrol_ChIP_peaks_unique-165	chr14	8638140	8638340	+	0.10367	NA	intron (NM_028934, intron 4 of 15)	intron (NM_028934, intron 4 of 15)	28050	NM_028934	74430	Mm.271901	NM_028934	ENSMUSG00000021747	4930452B06Rik	4933406L09Rik|AI854000	RIKEN cDNA 4930452B06 gene	protein-coding	0.000000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-1539	chr3	14649385	14649585	+	0.10367	NA	intron (NM_024495, intron 2 of 6)	B3A|SINE|B2	7758	NM_024495	71934	Mm.158776	NM_024495	ENSMUSG00000027555	Car13	2310075C21Rik|Ca13	carbonic anhydrase 13	protein-coding	0.005000	0.373134			
Oct4_nocontrol_ChIP_peaks_unique-73	chr11	18927293	18927493	+	0.10367	NA	intron (NM_001193271, intron 8 of 12)	intron (NM_001193271, intron 8 of 12)	91576	NM_010789	17268	Mm.356578	NM_010789	ENSMUSG00000020160	Meis1	C530044H18Rik|Evi8	Meis homeobox 1	protein-coding	0.000000	0.398010			-82(ATTTGCATTGCTATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-594	chr12	94051099	94051299	+	0.10367	NA	Intergenic	Intergenic	123861	NR_106175	102465890		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	0.000000	0.283582		81(CATGAATATGGAGA,+,0.00)	24(ATCAACAAAAGAAAAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-512	chr12	16924141	16924341	+	0.10367	NA	intron (NM_009072, intron 1 of 32)	intron (NM_009072, intron 1 of 32)	29263	NM_009072	19878	Mm.276024	NM_009072	ENSMUSG00000020580	Rock2	B230113H15Rik|ROKalpha|Rho-kinase|Rock-II|Rock2m|mKIAA0619	Rho-associated coiled-coil containing protein kinase 2	protein-coding	0.000000	0.303483			-33(ATTTAAAACAAAAAAT,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-385	chr4	58103127	58103327	+	0.10367	NA	intron (NM_022814, intron 22 of 47)	intron (NM_022814, intron 22 of 47)	-94101	NM_026132	67402	Mm.87357	NM_026132	ENSMUSG00000038709	Txndc8	4930429J24Rik|Sptrx-3|Sptrx3|Trx6	thioredoxin domain containing 8	protein-coding	0.005000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-946	chr15	102518194	102518394	+	0.10367	NA	5' UTR (NM_001253795, exon 1 of 7)	5' UTR (NM_001253795, exon 1 of 7)	102	NM_009319	21357	Mm.291485	NM_009319	ENSMUSG00000023051	Tarbp2	Prbp|TRBP	TARBP2, RISC loading complex RNA binding subunit	protein-coding	0.060000	0.552239			
ePOU_nocontrol_ChIP_peaks_unique-1929	chr5	44754439	44754639	+	0.10367	NA	intron (NM_001077398, intron 1 of 8)	intron (NM_001077398, intron 1 of 8)	45207	NM_001359071	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.000000	0.383085			79(TCATTTACATGGAAAT,+,0.00),81(ATTTACATGGAAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-619	chr12	113140136	113140336	+	0.10367	NA	promoter-TSS (NM_001347443)	promoter-TSS (NM_001347443)	0	NM_024223	68337	Mm.133825	NM_024223	ENSMUSG00000006356	Crip2	0610010I23Rik|AW743261|C77570|CRP2|CRP4|Crp|ESP1|Hlp	cysteine rich protein 2	protein-coding	0.100000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-2172	chr6	149309496	149309696	+	0.10367	NA	5' UTR (NM_001289662, exon 1 of 5)	5' UTR (NM_001289662, exon 1 of 5)	182	NM_001289661	67246	Mm.333515	NM_026054	ENSMUSG00000032712	Resf1	2810474O19Rik|6720435I21Rik|AA536804|AU020969|GET	retroelement silencing factor 1	protein-coding	0.125000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-674	chr13	58148490	58148690	+	0.10367	NA	non-coding (NR_126543, exon 2 of 2)	non-coding (NR_126543, exon 2 of 2)	1641	NR_126543	67339	Mm.121929	NR_126543	ENSMUSG00000097717	1700066J03Rik	-	RIKEN cDNA 1700066J03 gene	ncRNA	0.035000	0.492537			
merged_common-386	chr18	5163268	5163468	+	0.10367	NA	non-coding (NR_153824, exon 3 of 3)	non-coding (NR_153824, exon 3 of 3)	2363	NR_153824	102637682	Mm.451914	NR_153824		Gm26682	Gm38715	predicted gene, 26682	ncRNA	0.070000	0.552239		17(CATCCATATTCATG,+,0.00),17(CATCCATATTCATG,-,0.00)	
merged_common-184	chr11	120824197	120824397	+	0.10367	NA	5' UTR (NM_007988, exon 1 of 43)	5' UTR (NM_007988, exon 1 of 43)	250	NM_007988	14104	Mm.236443	NM_007988	ENSMUSG00000025153	Fasn	A630082H08Rik|FAS	fatty acid synthase	protein-coding	0.165000	0.800995			
ePOU_nocontrol_ChIP_peaks_unique-2637	chrX	93161211	93161411	+	0.10367	NA	Intergenic	Intergenic	5090	NR_103799	100042663	Mm.291732	NR_103799	ENSMUSG00000095110	1700003E24Rik	Gm14779	Gm5941 pseudogene	pseudo	0.005000	0.313433			
ePOU_nocontrol_ChIP_peaks_unique-2566	chr9	85487264	85487464	+	0.10367	NA	Intergenic	Intergenic	-160214	NM_001160379	212943	Mm.74610	NM_001160378	ENSMUSG00000032265	Tent5a	BAP014|D930050G01Rik|Fam46a	terminal nucleotidyltransferase 5A	protein-coding	0.000000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-1269	chr19	10940615	10940815	+	0.10367	NA	TTS (NM_023731)	TTS (NM_023731)	3555	NM_009962	14764	Mm.470721	NM_009962	ENSMUSG00000034117	Ptgdr2	Crth2|Gpr44|Grp45	prostaglandin D2 receptor 2	protein-coding	0.070000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-1293	chr19	32142568	32142768	+	0.10367	NA	intron (NM_001362423, intron 7 of 9)	intron (NM_001362423, intron 7 of 9)	-39528	NM_018830	54447	Mm.491229	NM_018830	ENSMUSG00000024887	Asah2	AI585898	N-acylsphingosine amidohydrolase 2	protein-coding	0.015000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-1501	chr2	153140218	153140418	+	0.10367	NA	intron (NM_001172117, intron 10 of 12)	intron (NM_001172117, intron 10 of 12)	-20983	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.015000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-2487	chr9	15023197	15023397	+	0.10367	NA	intron (NM_019482, intron 1 of 4)	B4|SINE|B4	22181	NM_019482	55991	Mm.142253	NM_019482	ENSMUSG00000031934	Panx1	AI847747	pannexin 1	protein-coding	0.000000	0.472637		-15(CATTCATATGCAGC,+,0.00)	-22(AGATTCTCATTCATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1576	chr3	53231169	53231369	+	0.10367	NA	intron (NM_175386, intron 2 of 3)	intron (NM_175386, intron 2 of 3)	189722	NM_175386	108927	Mm.118617	NM_175386	ENSMUSG00000048332	Lhfp	2810489O06Rik|AI194968|Lhfpl6	lipoma HMGIC fusion partner	protein-coding	0.010000	0.378109			-92(ATTTACATTACATAGT,-,0.00),-73(ATTTACATTAAAATAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-83	chr1	89063671	89063871	+	0.10367	NA	Intergenic	Intergenic	-6644	NM_133816	98402	Mm.170983	NM_133816	ENSMUSG00000036206	Sh3bp4	AI594717|AW227605|BOG25	SH3-domain binding protein 4	protein-coding	0.010000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-2328	chr7	141413895	141414095	+	0.10367	NA	intron (NM_172116, intron 1 of 7)	CpG	130	NM_172116	213350	Mm.290953	NM_172116	ENSMUSG00000051007	Gatd1	BC023835|D230016J19Rik|Pddc1	glutamine amidotransferase like class 1 domain containing 1	protein-coding	0.060000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-863	chr15	41597667	41597867	+	0.10367	NA	intron (NR_152565, intron 2 of 17)	intron (NR_152565, intron 2 of 17)	148664	NM_001358977	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.005000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-1903	chr5	24383578	24383778	+	0.10367	NA	TTS (NM_001002897)	TTS (NM_001002897)	8465	NM_001002897	213948	Mm.332252	NM_001002897	ENSMUSG00000038295	Atg9b	Apg912|Apg9l2|Apgdc2|Gm574|Nos3as|eONE|sONE	autophagy related 9B	protein-coding	0.065000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-2322	chr7	136894506	136894706	+	0.10367	NA	promoter-TSS (NM_008598)	promoter-TSS (NM_008598)	-5	NM_008598	17314	Mm.440219	NM_008598	ENSMUSG00000054612	Mgmt	AGT|AI267024|Agat	O-6-methylguanine-DNA methyltransferase	protein-coding	0.055000	0.626866			
Oct4_nocontrol_ChIP_peaks_unique-359	chr3	95315615	95315815	+	0.10367	NA	intron (NM_029789, intron 1 of 10)	(CTG)n|Simple_repeat|Simple_repeat	525	NM_029789	76893	Mm.181009	NM_029789	ENSMUSG00000015714	Cers2	0610013I17Rik|AI225939|Lass2|TRH3	ceramide synthase 2	protein-coding	0.065000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1512	chr2	164460944	164461144	+	0.10367	NA	promoter-TSS (NM_025575)	promoter-TSS (NM_025575)	73	NM_025575	66460	Mm.44218	NM_025575	ENSMUSG00000045503	Sys1	2610042O14Rik|AI266964|C87389	SYS1 Golgi-localized integral membrane protein homolog (S. cerevisiae)	protein-coding	0.115000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-1200	chr18	46756904	46757104	+	0.10367	NA	intron (NM_001303015, intron 2 of 6)	intron (NM_001303015, intron 2 of 6)	15128	NM_001303015	11777	Mm.312536	NM_009681	ENSMUSG00000024480	Ap3s1	-	adaptor-related protein complex 3, sigma 1 subunit	protein-coding	0.000000	0.328358			
Oct4_nocontrol_ChIP_peaks_unique-432	chr6	33955344	33955544	+	0.10367	NA	intron (NM_009148, intron 17 of 17)	intron (NM_009148, intron 17 of 17)	-74004	NM_028886	74354	Mm.127952	NM_028886	ENSMUSG00000056215	Lrguk	4921528H16Rik	leucine-rich repeats and guanylate kinase domain containing	protein-coding	0.020000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-1452	chr2	118218308	118218508	+	0.10367	NA	intron (NM_027759, intron 10 of 10)	intron (NM_027759, intron 10 of 10)	38558	NM_027759	71313	Mm.85046	NM_027759	ENSMUSG00000027344	Fsip1	1700012M13Rik|4933432K11Rik	fibrous sheath-interacting protein 1	protein-coding	0.005000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-2588	chr9	105892634	105892834	+	0.10367	NA	intron (NM_001167923, intron 29 of 40)	intron (NM_001167923, intron 29 of 40)	-64649	NM_001102607	245026	Mm.482507	NM_172927	ENSMUSG00000043719	Col6a6	E330019B14|E330026B02Rik	collagen, type VI, alpha 6	protein-coding	0.005000	0.353234			13(AATTGCATAGCAAATG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1537	chr3	12749020	12749220	+	0.10367	NA	Intergenic	Intergenic	-722535	NM_001357033	76897	Mm.422625	NM_178631	ENSMUSG00000039717	Ralyl	0710005M24Rik	RALY RNA binding protein-like	protein-coding	0.000000	0.353234			24(ATTTGCATGACATTGT,-,0.00),73(GCTTGTTGATGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-905	chr15	78934795	78934995	+	0.10367	NA	promoter-TSS (NM_133800)	promoter-TSS (NM_133800)	-38	NM_133800	97961	Mm.157216	NM_133800	ENSMUSG00000033099	Nol12	C78541|Nop25	nucleolar protein 12	protein-coding	0.045000	0.542289			
Oct4_nocontrol_ChIP_peaks_unique-491	chr7	130646358	130646558	+	0.10367	NA	intron (NM_001004468, intron 3 of 21)	CpG	-46160	NM_001347637	57752	Mm.86322	NM_021314	ENSMUSG00000030852	Tacc2	mKIAA4180	transforming, acidic coiled-coil containing protein 2	protein-coding	0.060000	0.631841			
Oct4_nocontrol_ChIP_peaks_unique-293	chr2	12301800	12302000	+	0.10367	NA	promoter-TSS (NR_138462)	promoter-TSS (NR_138462)	44	NR_138462	241226	Mm.329997	NM_001001309	ENSMUSG00000026768	Itga8	AI447669	integrin alpha 8	protein-coding	0.095000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-1746	chr4	43442232	43442432	+	0.10367	NA	promoter-TSS (NM_011571)	promoter-TSS (NM_011571)	55	NM_011571	21754	Mm.485441	NM_011571	ENSMUSG00000028458	Tesk1	AI326901	testis specific protein kinase 1	protein-coding	0.095000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-1832	chr4	118179778	118179978	+	0.10367	NA	intron (NM_172382, intron 1 of 18)	intron (NM_172382, intron 1 of 18)	165	NM_001161823	230674	Mm.234234	NM_172382	ENSMUSG00000033326	Kdm4a	D4Ertd222e|JHDM3A|Jmjd2|Jmjd2a|mKIAA0677	lysine (K)-specific demethylase 4A	protein-coding	0.040000	0.587065			
ePOU_nocontrol_ChIP_peaks_unique-995	chr16	37685038	37685238	+	0.10367	NA	Intergenic	Intergenic	-30770	NM_026610	68194	Mm.379154	NM_026610	ENSMUSG00000022820	Ndufb4	0610006N12Rik|1300010H20Rik	NADH:ubiquinone oxidoreductase subunit B4	protein-coding	0.035000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-1089	chr17	31819428	31819628	+	0.10367	NA	Intergenic	Intergenic	36276	NM_010831	17691	Mm.290941	NM_010831	ENSMUSG00000024042	Sik1	Hrt-20|Msk|Sik|Sik-1|Snf1lk	salt inducible kinase 1	protein-coding	0.015000	0.422886			-1(ATCTCCATCACAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2137	chr6	113024989	113025189	+	0.10367	NA	Intergenic	MER103C|DNA|hAT-Charlie	-21213	NM_001355266	14911	Mm.781	NM_008188	ENSMUSG00000030264	Thumpd3	AW556087|Gt(ROSA)26asSor|Gtrosa26as	THUMP domain containing 3	protein-coding	0.020000	0.422886			-51(ATTAACATATCAAAGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2275	chr7	110221758	110221958	+	0.10367	NA	exon (NM_009302, exon 1 of 12)	exon (NM_009302, exon 1 of 12)	155	NM_009302	20947	Mm.334144	NM_009302	ENSMUSG00000031015	Swap70	70kDa|AV235546	SWA-70 protein	protein-coding	0.095000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-1919	chr5	35717802	35718002	+	0.10367	NA	intron (NM_001359895, intron 5 of 17)	B1_Mus2|SINE|Alu	11374	NM_194344	231147	Mm.290429	NM_194344	ENSMUSG00000036553	Sh3tc1	4631428G15|BC024909	SH3 domain and tetratricopeptide repeats 1	protein-coding	0.020000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-1202	chr18	52137627	52137827	+	0.10367	NA	Intergenic	Intergenic	-14181	NR_029788	723830		NR_029788	ENSMUSG00000065494	Mir28a	Mir28|Mirn28|mmu-mir-28|mmu-mir-28a	microRNA 28a	ncRNA	0.005000	0.313433	-9(CCTGAAATATTCATT,+,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-476	chr11	108269233	108269433	+	0.10367	NA	intron (NM_011101, intron 2 of 16)	intron (NM_011101, intron 2 of 16)	74555	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.005000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-1788	chr4	84551752	84551952	+	0.10367	NA	intron (NM_001369083, intron 2 of 6)	intron (NM_001369083, intron 2 of 6)	58345	NM_001369081	242509	Mm.190774	NM_172870	ENSMUSG00000028487	Bnc2	5031434M05Rik|8430420F16Rik	basonuclin 2	protein-coding	0.000000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-1883	chr5	3776869	3777069	+	0.10367	NA	intron (NM_001003909, intron 1 of 19)	intron (NM_001003909, intron 1 of 19)	-4182	NM_001289529	70797	Mm.130148	NM_001003909	ENSMUSG00000040351	Ankib1	2310061P20Rik|4631416I11Rik|AW494740|C80642|mKIAA1386	ankyrin repeat and IBR domain containing 1	protein-coding	0.005000	0.323383			
ePOU_nocontrol_ChIP_peaks_unique-1500	chr2	152847721	152847921	+	0.10367	NA	promoter-TSS (NM_001141977)	promoter-TSS (NM_001141977)	-143	NM_028109	72119	Mm.407737	NM_028109	ENSMUSG00000027469	Tpx2	2610005B21Rik|DIL2|REPP86|p100	TPX2, microtubule-associated	protein-coding	0.020000	0.467662			-73(ATAAACAAAACAAACA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1872	chr4	152039122	152039322	+	0.10367	NA	promoter-TSS (NM_028727)	promoter-TSS (NM_028727)	-99	NR_131076	74035	Mm.275803	NM_028727	ENSMUSG00000028948	Nol9	4632412I24Rik|6030462G04Rik|AI449622|AW490720	nucleolar protein 9	protein-coding	0.080000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-2199	chr7	29180629	29180829	+	0.10367	NA	promoter-TSS (NM_026545)	promoter-TSS (NM_026545)	-56	NM_026545	57296	Mm.273152	NM_026545	ENSMUSG00000030591	Psmd8	6720456J22Rik|AA407360|AL033291|AL033322|AL033323|C76433	proteasome (prosome, macropain) 26S subunit, non-ATPase, 8	protein-coding	0.065000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-651	chr13	34248766	34248966	+	0.10367	NA	intron (NM_001033167, intron 3 of 10)	intron (NM_001033167, intron 3 of 10)	85902	NM_001110515	69666	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.025000	0.412935			
merged_common-47	chr1	133492675	133492875	+	0.10367	NA	Intergenic	Intergenic	-68563	NM_011439	20668	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0.025000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-1734	chr4	29832916	29833116	+	0.10367	NA	Intergenic	Intergenic	764937	NR_151693	102634169		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0.020000	0.343284			54(TTTTATTCATGGAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2197	chr7	28436996	28437196	+	0.10367	NA	promoter-TSS (NM_001290550)	promoter-TSS (NM_001290550)	-351	NM_001290550	63986	Mm.194536	NM_022024	ENSMUSG00000060791	Gmfg	0610039G16Rik|2310057N07Rik|AI324845	glia maturation factor, gamma	protein-coding	0.040000	0.547264			
ePOU_nocontrol_ChIP_peaks_unique-571	chr12	73068006	73068206	+	0.10367	NA	Intergenic	Intergenic	-21394	NM_009189	20471	Mm.4645	NM_009189	ENSMUSG00000051367	Six1	BB138287	sine oculis-related homeobox 1	protein-coding	0.030000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-1417	chr2	91221875	91222075	+	0.10367	NA	intron (NM_028119, intron 3 of 9)	intron (NM_028119, intron 3 of 9)	15091	NM_028119	107986	Mm.389334	NM_028119	ENSMUSG00000002109	Ddb2	2610043A19Rik	damage specific DNA binding protein 2	protein-coding	0.015000	0.482587			
Oct4_nocontrol_ChIP_peaks_unique-72	chr11	16081177	16081377	+	0.10367	NA	Intergenic	Intergenic	-176465	NM_145967	211739	Mm.284015	NM_145967	ENSMUSG00000048834	Vstm2a	Vstm2	V-set and transmembrane domain containing 2A	protein-coding	0.000000	0.323383		-20(GTTGAATATTCATA,+,0.00),-20(GTTGAATATTCATA,-,0.00)	-15(ATATTCATAAAAAAGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1217	chr18	62806115	62806315	+	0.10367	NA	Intergenic	Intergenic	-49868	NR_037693	78449	Mm.262195	NR_037693	ENSMUSG00000041789	2700046A07Rik	A330042I05Rik	RIKEN cDNA 2700046A07 gene	ncRNA	0.000000	0.348259			
merged_common-713	chr6	107059024	107059224	+	0.10367	NA	Intergenic	RLTR25A|LTR|ERVK	-259037	NM_021449	58799	Mm.290085	NM_021449	ENSMUSG00000005362	Crbn	2610203G15Rik|2900045O07Rik|AF229032|AW108261|piL	cereblon	protein-coding	0.015000	0.432836			26(GAATTCTTTGGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1998	chr5	130079347	130079547	+	0.10367	NA	promoter-TSS (NM_001130476)	promoter-TSS (NM_001130476)	77	NM_001130476	22021	Mm.332720	NM_013837	ENSMUSG00000034118	Tpst1	R75054|Tango13a	protein-tyrosine sulfotransferase 1	protein-coding	0.160000	0.776119			
ePOU_nocontrol_ChIP_peaks_unique-866	chr15	42607927	42608127	+	0.10367	NA	intron (NM_001286062, intron 1 of 8)	intron (NM_001286062, intron 1 of 8)	68950	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.010000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-1813	chr4	105169243	105169443	+	0.10367	NA	intron (NM_080555, intron 1 of 5)	intron (NM_080555, intron 1 of 5)	11996	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|PRG-2|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.020000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-1353	chr2	27540175	27540375	+	0.10367	NA	Intergenic	CpG	25128	NM_080848	140858	Mm.28265	NM_080848	ENSMUSG00000026917	Wdr5	2410008O07Rik|AA408785|AA960360|Big|Big-3	WD repeat domain 5	protein-coding	0.100000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-1554	chr3	31087427	31087627	+	0.10367	NA	Intergenic	B1F2|SINE|Alu	-7531	NM_001039090	20482	Mm.15406	NM_011386	ENSMUSG00000027660	Skil	Skir|SnoN|sno	SKI-like	protein-coding	0.010000	0.368159			-41(ATCTACATAACAAGTC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2111	chr6	84449745	84449945	+	0.10367	NA	Intergenic	Intergenic	-26007	NR_046063	100038556	Mm.387783	NR_046063	ENSMUSG00000107797	Gm10445	-	predicted gene 10445	ncRNA	0.015000	0.308458		-43(AATACATATGTAAG,-,0.00)	-2(TCAGTGTGATGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-376	chr11	42436017	42436217	+	0.10367	NA	intron (NM_001362646, intron 4 of 9)	RMER17D|LTR|ERVK	14916	NM_001347314	14401	Mm.338723	NM_008070	ENSMUSG00000007653	Gabrb2	AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2	gamma-aminobutyric acid (GABA) A receptor, subunit beta 2	protein-coding	0.005000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-2179	chr7	10550119	10550319	+	0.10367	NA	Intergenic	Intergenic	-22050	NM_001172072	628580	Mm.480301	NM_001172072	ENSMUSG00000047031	Vmn1r68	EG628580|Gm6898	vomeronasal 1 receptor 68	protein-coding	0.000000	0.393035			61(GCATTATTATGTACAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-761	chr14	30562391	30562591	+	0.10367	NA	intron (NM_009388, intron 4 of 13)	MER99|DNA|hAT?	-9658	NR_037237	100526475		NR_037237	ENSMUSG00000093156	Mir3076	mir-3076|mmu-mir-3076	microRNA 3076	ncRNA	0.000000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-1487	chr2	145530705	145530905	+	0.10367	NA	intron (NM_053195, intron 6 of 16)	intron (NM_053195, intron 6 of 16)	24177	NM_001037929	627302	Mm.445953	NM_001037929		Gm14092	-	predicted gene 14092	protein-coding	0.000000	0.492537			-92(GTTTTGTTTTTCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-853	chr15	30520267	30520467	+	0.10367	NA	intron (NM_008729, intron 3 of 22)	intron (NM_008729, intron 3 of 22)	347833	NM_008729	18163	Mm.321648	NM_008729	ENSMUSG00000022240	Ctnnd2	Catnd2|Nprap|neurojugin	catenin (cadherin associated protein), delta 2	protein-coding	0.005000	0.318408			-80(ATATAAATGACAAATG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-984	chr16	29799586	29799786	+	0.10367	NA	Intergenic	Intergenic	179438	NR_037689	328657	Mm.425982	NM_001033403	ENSMUSG00000075286	Gm1968	-	predicted gene 1968	ncRNA	0.015000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-1001	chr16	43191996	43192196	+	0.10367	NA	intron (NM_001285805, intron 2 of 10)	intron (NM_001285805, intron 2 of 10)	-55188	NM_019778	56490	Mm.136238	NM_019778	ENSMUSG00000022708	Zbtb20	1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288	zinc finger and BTB domain containing 20	protein-coding	0.005000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-1277	chr19	23135286	23135486	+	0.10367	NA	Intergenic	CpG	-5840	NM_010638	16601	Mm.291595	NM_010638	ENSMUSG00000033863	Klf9	2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971	Kruppel-like factor 9	protein-coding	0.045000	0.552239			
ePOU_nocontrol_ChIP_peaks_unique-1013	chr16	50575502	50575702	+	0.10367	NA	Intergenic	Intergenic	-14901	NR_040566	75211	Mm.399337	NR_040566	ENSMUSG00000116848	4930542D17Rik	-	RIKEN cDNA 4930542D17 gene	ncRNA	0.000000	0.313433			-47(ATTTACATGTAAAATG,-,0.00),79(ATTTAAATTAGAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-119	chr1	144141674	144141874	+	0.10367	NA	intron (NM_153171, intron 4 of 5)	RLTR13B1|LTR|ERVK	35598	NM_153171	246709	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0.010000	0.407960	-49(CATGAATAATGCAAT,+,0.00),-49(CATGAATAATGCAAT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-965	chr16	20141341	20141541	+	0.10367	NA	intron (NM_001033237, intron 1 of 29)	CpG	378	NM_001033237	208146	Mm.390895	NM_001033237	ENSMUSG00000041215	Yeats2	BC042768|mKIAA1197	YEATS domain containing 2	protein-coding	0.115000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-2379	chr8	47714146	47714346	+	0.10367	NA	promoter-TSS (NM_172407)	promoter-TSS (NM_172407)	-315	NM_001359133	70925	Mm.393807	NM_172407	ENSMUSG00000038069	Cdkn2aip	4921511I16Rik|AW208986|CARF	CDKN2A interacting protein	protein-coding	0.165000	0.751244			
ePOU_nocontrol_ChIP_peaks_unique-1352	chr2	26503926	26504126	+	0.10367	NA	promoter-TSS (NR_132655)	promoter-TSS (NR_132655)	99	NR_132655	102639736		NR_132655		Gm35978	-	predicted gene, 35978	ncRNA	0.050000	0.547264			
ePOU_nocontrol_ChIP_peaks_unique-2264	chr7	96212928	96213128	+	0.10367	NA	intron (NM_001310760, intron 1 of 32)	intron (NM_001310760, intron 1 of 32)	1357	NM_001310760	23966	Mm.254610	NM_011858	ENSMUSG00000048078	Tenm4	Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302	teneurin transmembrane protein 4	protein-coding	0.055000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-1467	chr2	128687386	128687586	+	0.10367	NA	promoter-TSS (NM_008569)	promoter-TSS (NM_008569)	-91	NM_008569	17222	Mm.277408	NM_008569	ENSMUSG00000014355	Anapc1	2610021O03Rik|AI047775|AI853536|AW547281|Apc1|Mcpr|tsg24	anaphase promoting complex subunit 1	protein-coding	0.055000	0.517413			
ePOU_nocontrol_ChIP_peaks_unique-117	chr1	143777068	143777268	+	0.10367	NA	promoter-TSS (NM_013835)	promoter-TSS (NM_013835)	-110	NM_001159866	56207	Mm.261004	NM_019562	ENSMUSG00000018189	Uchl5	5830413B11Rik|Uch37	ubiquitin carboxyl-terminal esterase L5	protein-coding	0.120000	0.731343			
ePOU_nocontrol_ChIP_peaks_unique-1113	chr17	56242194	56242394	+	0.10367	NA	promoter-TSS (NR_029827)	promoter-TSS (NR_029827)	578	NR_155493	320593	Mm.125338	NR_155493	ENSMUSG00000117172	A230051N06Rik	-	RIKEN cDNA A230051N06 gene	ncRNA	0.045000	0.582090			
ePOU_nocontrol_ChIP_peaks_unique-1723	chr4	13740096	13740296	+	0.10367	NA	Intergenic	Intergenic	-3106	NM_001111026	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	RUNX1 translocation partner 1	protein-coding	0.000000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-1067	chr17	21450304	21450504	+	0.10367	NA	promoter-TSS (NM_001308323)	promoter-TSS (NM_001308323)	30	NM_001308323	22709	Mm.293030	NM_009558	ENSMUSG00000023892	Zfp51	Zfp-51|zfec12	zinc finger protein 51	protein-coding	0.055000	0.532338			
Oct4_nocontrol_ChIP_peaks_unique-303	chr2	48001814	48002014	+	0.10367	NA	Intergenic	Intergenic	-812195	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.010000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-1471	chr2	132846523	132846723	+	0.10367	NA	promoter-TSS (NM_001024385)	promoter-TSS (NM_001024385)	-43	NM_001024385	66586	Mm.357342	NM_025646	ENSMUSG00000027357	Crls1	0610009I22Rik|4930557M15Rik|5730490M08Rik	cardiolipin synthase 1	protein-coding	0.085000	0.597015			
ePOU_nocontrol_ChIP_peaks_unique-467	chr11	101604139	101604339	+	0.10367	NA	Intergenic	Intergenic	-4983	NM_001363237	667306		NM_001363237		Gm11634	-	predicted gene 11634	protein-coding	0.015000	0.398010	-69(AATGAACTATGCATA,+,0.00),-69(AATGAACTATGCATA,-,0.00)	-62(TATGCATATTGAGT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2053	chr6	30357755	30357955	+	0.10367	NA	Intergenic	Intergenic	33165	NM_001311086	232679	Mm.29780	NM_172735	ENSMUSG00000039130	Zc3hc1	1110054L24Rik|AU018540|AU019789|HSPC216|Nipa	zinc finger, C3HC type 1	protein-coding	0.020000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-838	chr15	6238585	6238785	+	0.10367	NA	Intergenic	Intergenic	-61104	NM_001008702	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.025000	0.442786		-78(CATGATTATTCAGG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1438	chr2	108731940	108732140	+	0.10367	NA	Intergenic	Intergenic	546250	NM_029790	76894	Mm.330451	NM_029790	ENSMUSG00000057234	Mettl15	0610027B03Rik|AI303697|AW049952|Mett5d1	methyltransferase like 15	protein-coding	0.000000	0.378109	1(TATGAATTATGCATG,+,0.00),1(TATGAATTATGCATG,-,0.00)	-75(GATCTATATTCATG,-,0.00)	55(ATTTGCATCTGAATAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1742	chr4	40301167	40301367	+	0.10367	NA	Intergenic	Intergenic	-11965	NR_040663	75819	Mm.399244	NR_040663	ENSMUSG00000087137	4930509K18Rik	-	RIKEN cDNA 4930509K18 gene	ncRNA	0.050000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-1367	chr2	36136518	36136718	+	0.10367	NA	promoter-TSS (NM_026434)	promoter-TSS (NM_026434)	86	NR_027515	67889	Mm.205937	NM_026434	ENSMUSG00000026889	Rbm18	2010004P11Rik|AU015530	RNA binding motif protein 18	protein-coding	0.130000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-1403	chr2	79038679	79038879	+	0.10367	NA	Intergenic	Intergenic	169101	NM_001356395	22193	Mm.1485	NM_009454	ENSMUSG00000027011	Ube2e3	Ubce4|ubcM2	ubiquitin-conjugating enzyme E2E 3	protein-coding	0.005000	0.497512			
Oct4_nocontrol_ChIP_peaks_unique-289	chr2	4882430	4882630	+	0.10367	NA	promoter-TSS (NM_001362708)	promoter-TSS (NM_001362708)	303	NM_001362707	109079	Mm.34329	NM_175400	ENSMUSG00000026662	Sephs1	1110046B24Rik|AA589574|AI505014|AW111620|SELD|SPS|SPS1	selenophosphate synthetase 1	protein-coding	0.125000	0.776119			
ePOU_nocontrol_ChIP_peaks_unique-2633	chrX	75674061	75674261	+	0.10367	NA	Intergenic	Intergenic	90538	NR_029443	74396	Mm.162493	NR_029443	ENSMUSG00000087396	4933407K13Rik	A130080L05Rik|Dxz4	RIKEN cDNA 4933407K13 gene	ncRNA	0.015000	0.512438			
ePOU_nocontrol_ChIP_peaks_unique-1778	chr4	77283710	77283910	+	0.10367	NA	intron (NR_160919, intron 6 of 39)	intron (NR_160919, intron 6 of 39)	927932	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.000000	0.323383			-4(CATTTGTTATTTTAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-60	chr10	66547844	66548044	+	0.10367	NA	Intergenic	Intergenic	372440	NR_138561	68488	Mm.338835	NR_138560		1110002J07Rik	-	RIKEN cDNA 1110002J07 gene	ncRNA	0.010000	0.412935			81(ATTTCCTTGACAGAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1660	chr3	108911616	108911816	+	0.10367	NA	promoter-TSS (NM_025845)	promoter-TSS (NM_025845)	13	NM_025845	66921	Mm.51049	NM_025845	ENSMUSG00000027881	Prpf38b	1110021E09Rik|AU018955	PRP38 pre-mRNA processing factor 38 (yeast) domain containing B	protein-coding	0.105000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-2438	chr8	92065735	92065935	+	0.10367	NA	Intergenic	Intergenic	-264181	NM_008393	16373	Mm.238044	NM_008393	ENSMUSG00000031734	Irx3	AI894186	Iroquois related homeobox 3	protein-coding	0.005000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-1015	chr16	57292225	57292425	+	0.10367	NA	intron (NM_027651, intron 1 of 7)	intron (NM_027651, intron 1 of 7)	526	NM_027651	71027	Mm.158563	NM_027651	ENSMUSG00000022753	Tmem30c	4933401B01Rik|4933409A18Rik|Cdc50c	transmembrane protein 30C	protein-coding	0.010000	0.388060		-29(AATGCAAATGCATA,+,0.00),-29(AATGCAAATGCATA,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-338	chr3	19543165	19543365	+	0.10367	NA	intron (NM_001163537, intron 1 of 4)	ORR1A4|LTR|ERVL-MaLR	12018	NM_001163537	66326	Mm.45615	NM_025489	ENSMUSG00000027606	Dnajc5b	1700008A05Rik	DnaJ heat shock protein family (Hsp40) member C5 beta	protein-coding	0.010000	0.402985		7(CATGCATATTCAAA,+,0.00),7(CATGCATATTCAAA,-,0.00)	0(TCTGTGCCATGCATAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-489	chr7	127967409	127967609	+	0.10367	NA	promoter-TSS (NM_139149)	promoter-TSS (NM_139149)	30	NM_139149	233908	Mm.277680	NM_139149	ENSMUSG00000030795	Fus	D430004D17Rik|D930039C12Rik|Fus1|Tls	fused in sarcoma	protein-coding	0.170000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-1011	chr16	50046044	50046244	+	0.10367	NA	intron (NR_045935, intron 1 of 3)	intron (NR_045935, intron 1 of 3)	26708	NR_045935	224180	Mm.146439	NM_175010		Gm4827	B130050K08|EG224180	predicted gene 4827	ncRNA	0.045000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-1147	chr17	83746632	83746832	+	0.10367	NA	intron (NM_001171054, intron 4 of 13)	intron (NM_001171054, intron 4 of 13)	40569	NM_001171053	116871	Mm.277668	NM_054082	ENSMUSG00000055817	Mta3	1110002J22Rik|mKIAA1266	metastasis associated 3	protein-coding	0.010000	0.542289			
ePOU_nocontrol_ChIP_peaks_unique-1243	chr18	81321510	81321710	+	0.10367	NA	Intergenic	Tigger7|DNA|TcMar-Tigger	-334589	NM_001369133	20689	Mm.215917	NM_178280	ENSMUSG00000024565	Sall3	B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt	spalt like transcription factor 3	protein-coding	0.005000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-1771	chr4	64259985	64260185	+	0.10367	NA	intron (NR_151546, intron 2 of 3)	intron (NR_151546, intron 2 of 3)	16518	NR_151546	102633436	Mm.411637	NR_151546		Gm11217	-	predicted gene 11217	ncRNA	0.015000	0.333333			-64(ATTTGTATGAAAAAGA,-,0.00),-2(TTATTATAATGCTAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-279	chr19	32485573	32485773	+	0.10367	NA	promoter-TSS (NM_010799)	promoter-TSS (NM_010799)	-96	NM_010799	17330	Mm.255116	NM_010799	ENSMUSG00000024896	Minpp1	AA408516	multiple inositol polyphosphate histidine phosphatase 1	protein-coding	0.075000	0.567164			
ePOU_nocontrol_ChIP_peaks_unique-72	chr1	84249884	84250084	+	0.10367	NA	intron (NM_001003948, intron 1 of 2)	intron (NM_001003948, intron 1 of 2)	-31023	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.368159			48(ATCTGAAAAAAAAATG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2114	chr6	88189693	88189893	+	0.10367	NA	Intergenic	CpG	-4098	NM_001355253	14461	Mm.491156	NM_008090	ENSMUSG00000015053	Gata2	Gata-2	GATA binding protein 2	protein-coding	0.090000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-818	chr14	101761881	101762081	+	0.10367	NA	intron (NM_201529, intron 1 of 30)	intron (NM_201529, intron 1 of 30)	32053	NM_201529	380928	Mm.218981	NM_201529	ENSMUSG00000033060	Lmo7	C78582|FBXO20|Gm914|mKIAA0858	LIM domain only 7	protein-coding	0.000000	0.288557			
ePOU_nocontrol_ChIP_peaks_unique-2202	chr7	30729527	30729727	+	0.10367	NA	promoter-TSS (NM_027215)	promoter-TSS (NM_027215)	-93	NM_027215	69804	Mm.27499	NM_027215	ENSMUSG00000006315	Tmem147	2010004E11Rik|5033425B17Rik|Nifie14	transmembrane protein 147	protein-coding	0.090000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-1848	chr4	131873695	131873895	+	0.10367	NA	promoter-TSS (NM_001369308)	promoter-TSS (NM_001369308)	156	NM_020587	57317	Mm.2478	NM_020587	ENSMUSG00000028911	Srsf4	5730499P16Rik|AW550192|MNCb-2616|SRp75|Sfrs4	serine/arginine-rich splicing factor 4	protein-coding	0.130000	0.726368			
Oct4_nocontrol_ChIP_peaks_unique-283	chr19	45006114	45006314	+	0.10367	NA	promoter-TSS (NM_153796)	promoter-TSS (NM_153796)	228	NM_053164	94067	Mm.44174	NM_053164	ENSMUSG00000025208	Mrpl43	4930442D21Rik|bMRP36a	mitochondrial ribosomal protein L43	protein-coding	0.130000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-795	chr14	68125704	68125904	+	0.10367	NA	promoter-TSS (NM_008691)	promoter-TSS (NM_008691)	-800	NM_008691	18040	Mm.242832	NM_008691	ENSMUSG00000022054	Nefm	NF-M|NF160|NF165|Nef3|Nfm	neurofilament, medium polypeptide	protein-coding	0.025000	0.552239			
ePOU_nocontrol_ChIP_peaks_unique-1677	chr3	122245745	122245945	+	0.10367	NA	5' UTR (NM_008129, exon 1 of 7)	5' UTR (NM_008129, exon 1 of 7)	288	NM_008129	14630	Mm.292676	NM_008129	ENSMUSG00000028124	Gclm	AI649393|Gcmc|Glclr	glutamate-cysteine ligase, modifier subunit	protein-coding	0.140000	0.791045			
ePOU_nocontrol_ChIP_peaks_unique-36	chr1	55575916	55576116	+	0.10367	NA	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	170070	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.000000	0.562189			17(CTATTGCTATGCAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-951	chr16	8384499	8384699	+	0.10367	NA	Intergenic	Intergenic	40537	NM_029070	74720	Mm.159318	NM_029070	ENSMUSG00000022715	Tmem114	4930511J11Rik|Cldn26	transmembrane protein 114	protein-coding	0.000000	0.313433			-100(GTTTGAATCACAAATT,-,0.00),-88(AATTGCATGCTAATGG,-,0.00),2(ATTTGCATTGCAAAAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-17	chr1	37540838	37541038	+	0.10367	NA	promoter-TSS (NM_173870)	promoter-TSS (NM_173870)	78	NM_173870	269181	Mm.25861	NM_173870	ENSMUSG00000026110	Mgat4a	9530018I07Rik|GnT-IVa|glcNAc-T-IVa	mannoside acetylglucosaminyltransferase 4, isoenzyme A	protein-coding	0.175000	0.825871			
ePOU_nocontrol_ChIP_peaks_unique-2300	chr7	121233168	121233368	+	0.10367	NA	Intergenic	L1M5|LINE|L1	149844	NM_139310	246190	Mm.221073	NM_139310	ENSMUSG00000034990	Otoa	-	otoancorin	protein-coding	0.005000	0.318408			
Oct4_nocontrol_ChIP_peaks_unique-217	chr15	93397907	93398107	+	0.10367	NA	promoter-TSS (NM_001285864)	promoter-TSS (NM_001285864)	327	NM_001347097	67197	Mm.293181	NM_026025	ENSMUSG00000022635	Zcrb1	2700088M22Rik|Madp-1	zinc finger CCHC-type and RNA binding motif 1	protein-coding	0.080000	0.651741			
Oct4_nocontrol_ChIP_peaks_unique-353	chr3	84582523	84582723	+	0.10367	NA	promoter-TSS (NM_001081093)	promoter-TSS (NM_001081093)	2	NM_001081093	99889	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	0.095000	0.671642			
Oct4_nocontrol_ChIP_peaks_unique-274	chr19	10555635	10555835	+	0.10367	NA	promoter-TSS (NM_001277861)	promoter-TSS (NM_001277861)	28	NM_001277861	68642	Mm.31236	NM_026798	ENSMUSG00000024667	Tmem216	1110017C22Rik|2810441K11Rik|4921533J23Rik|A930021F15Rik|AI482550	transmembrane protein 216	protein-coding	0.085000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-1896	chr5	21204854	21205054	+	0.10367	NA	intron (NM_001359877, intron 3 of 18)	intron (NM_001359877, intron 3 of 18)	18687	NM_001359877	212167	Mm.121705	NM_175437	ENSMUSG00000039934	Gsap	A530088I07Rik|Pion	gamma-secretase activating protein	protein-coding	0.005000	0.368159			
Oct4_nocontrol_ChIP_peaks_unique-45	chr10	11754216	11754416	+	0.10367	NA	Intergenic	Intergenic	145092	NM_013898	30058	Mm.214504	NM_013898	ENSMUSG00000048007	Timm8a1	DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a	translocase of inner mitochondrial membrane 8A1	protein-coding	0.005000	0.432836		-18(TATGCATATGAATA,+,0.00),-18(TATGCATATGAATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2130	chr6	100670287	100670487	+	0.10367	NA	intron (NM_181590, intron 1 of 10)	intron (NM_181590, intron 1 of 10)	770	NM_181590	72171	Mm.256022	NM_181590	ENSMUSG00000035378	Shq1	2810403P18Rik|Grim-1	SHQ1 homolog (S. cerevisiae)	protein-coding	0.030000	0.442786			
merged_common-363	chr17	33929382	33929582	+	0.10367	NA	promoter-TSS (NM_009059)	promoter-TSS (NM_009059)	-412	NM_009059	19732	Mm.43777	NM_009059	ENSMUSG00000041354	Rgl2	KE1.5|Rab2l|Rgt2|Rlf	ral guanine nucleotide dissociation stimulator-like 2	protein-coding	0.160000	0.726368			
Oct4_nocontrol_ChIP_peaks_unique-486	chr7	119720562	119720762	+	0.10367	NA	exon (NM_145585, exon 2 of 5)	exon (NM_145585, exon 2 of 5)	2957	NM_145585	233802	Mm.26392	NM_145585	ENSMUSG00000030942	Thumpd1	6330575P11Rik	THUMP domain containing 1	protein-coding	0.090000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-2488	chr9	16982809	16983009	+	0.10367	NA	Intergenic	Intergenic	-480855	NM_001080814	270120	Mm.195010	NM_001080814	ENSMUSG00000074505	Fat3	9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F	FAT atypical cadherin 3	protein-coding	0.010000	0.288557		8(TATGTATATTCATT,+,0.00),8(TATGTATATTCATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-949	chr16	3743816	3744016	+	0.10367	NA	promoter-TSS (NM_148924)	promoter-TSS (NM_148924)	-183	NM_148924	74120	Mm.29081	NM_148924	ENSMUSG00000022529	Zfp263	1200014J04Rik|AI326880|AU020888|NT2|mFPM315	zinc finger protein 263	protein-coding	0.045000	0.577114			-56(ACTTTCCTATGCAAAT,+,0.00),83(GCTCTTTTATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-631	chr13	13778295	13778495	+	0.10367	NA	TTS (NM_010748)	TTS (NM_010748)	-5664	NM_001302997	14706	Mm.215394	NM_010317	ENSMUSG00000021303	Gng4	-	guanine nucleotide binding protein (G protein), gamma 4	protein-coding	0.010000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-598	chr12	97798390	97798590	+	0.10367	NA	Intergenic	Intergenic	460969	NM_008079	14420	Mm.5120	NM_008079	ENSMUSG00000021003	Galc	2310068B06Rik|A930008M05Rik|AW212969|AW413532|Gacy|twi|twitcher	galactosylceramidase	protein-coding	0.005000	0.363184			
Oct4_nocontrol_ChIP_peaks_unique-69	chr10	107932733	107932933	+	0.10367	NA	Intergenic	Intergenic	-13812	NR_131147	628877	Mm.363120	NR_131147	ENSMUSG00000112910	Gm29685	-	predicted gene, 29685	ncRNA	0.000000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-432	chr11	77369674	77369874	+	0.10367	NA	intron (NM_001291190, intron 1 of 13)	intron (NM_001291190, intron 1 of 13)	21494	NM_001291190	237860	Mm.440381	NM_177710	ENSMUSG00000037926	Ssh2	SSH-2|SSH-2L|mSSH-2L	slingshot protein phosphatase 2	protein-coding	0.000000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-2445	chr8	95633501	95633701	+	0.10367	NA	promoter-TSS (NM_030198)	promoter-TSS (NM_030198)	42	NM_030198	78833	Mm.35546	NM_030198	ENSMUSG00000031669	Gins3	2700085M18Rik|AI616142	GINS complex subunit 3 (Psf3 homolog)	protein-coding	0.095000	0.646766			
Oct4_nocontrol_ChIP_peaks_unique-157	chr13	98926432	98926632	+	0.10367	NA	promoter-TSS (NM_178716)	promoter-TSS (NM_178716)	-148	NM_178716	238799	Mm.173286	NM_178716	ENSMUSG00000009470	Tnpo1	AU021749|D13Ertd688e|IPO2|Kpnb2|MIP|MIP1|TRN	transportin 1	protein-coding	0.125000	0.771144			
ePOU_nocontrol_ChIP_peaks_unique-2353	chr8	25415348	25415548	+	0.10367	NA	Intergenic	RMER1A|Other|Other	-103311	NM_010206	14182	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Fr1|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.005000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-2019	chr5	145280351	145280551	+	0.10367	NA	Intergenic	Intergenic	-2892	NM_001081431	666311	Mm.260773	NM_001081431	ENSMUSG00000070420	Zscan25	EG666311|Zfp498	zinc finger and SCAN domain containing 25	protein-coding	0.075000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-243	chr10	61570375	61570575	+	0.10367	NA	intron (NM_153542, intron 4 of 4)	intron (NM_153542, intron 4 of 4)	-24820	NM_001177511	237362	Mm.131297	NM_001177511	ENSMUSG00000020090	Npffr1	Gm236|Gpr147|NPFF1|NPFF1R|OT7T022	neuropeptide FF receptor 1	protein-coding	0.025000	0.557214	47(GTTGAATAATTCATT,+,0.00),47(GTTGAATAATTCATT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1479	chr2	138267348	138267548	+	0.10367	NA	intron (NM_001025431, intron 1 of 4)	intron (NM_001025431, intron 1 of 4)	10864	NM_001025431	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.015000	0.328358			
ePOU_nocontrol_ChIP_peaks_unique-2616	chr9	123112985	123113185	+	0.10367	NA	promoter-TSS (NM_001081188)	promoter-TSS (NM_001081188)	120	NM_026917	69035	Mm.28300	NM_026917	ENSMUSG00000025786	Zdhhc3	1110020O22Rik|1810006O10Rik|2210017C02Rik|DHHC-3|GODZ|Gramp1|Zfp373	zinc finger, DHHC domain containing 3	protein-coding	0.120000	0.751244			
ePOU_nocontrol_ChIP_peaks_unique-1164	chr18	14783117	14783317	+	0.10367	NA	promoter-TSS (NM_001100449)	promoter-TSS (NM_001100449)	-28	NM_001369357	72504	Mm.312233	NM_001100449	ENSMUSG00000054321	Taf4b	105kDa|2610524B04Rik|4932409F03Rik|AW987595|TAFII-105|TAFII105|Taf2c2	TATA-box binding protein associated factor 4b	protein-coding	0.115000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-2194	chr7	27474676	27474876	+	0.10367	NA	intron (NM_133210, intron 1 of 1)	intron (NM_133210, intron 1 of 1)	936	NM_133210	170742	Mm.200120	NM_133210	ENSMUSG00000055200	Sertad3	AW124805|D1Mgi51|Rbt1|Sei3	SERTA domain containing 3	protein-coding	0.030000	0.572139			
Oct4_nocontrol_ChIP_peaks_unique-325	chr2	138291284	138291484	+	0.10367	NA	Intergenic	Intergenic	12891	NM_145534	228662	Mm.153405	NM_145534	ENSMUSG00000062098	Btbd3	mKIAA0952	BTB (POZ) domain containing 3	protein-coding	0.015000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-2451	chr8	108510648	108510848	+	0.10367	NA	Intergenic	Intergenic	73929	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.020000	0.542289			29(ATCTGCATGCCCATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1041	chr17	3557468	3557668	+	0.10367	NA	promoter-TSS (NR_045303)	promoter-TSS (NR_045303)	187	NM_146074	224481	Mm.226554	NM_146074	ENSMUSG00000036983	Tfb1m	AI429207|mtTFB1	transcription factor B1, mitochondrial	protein-coding	0.090000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-815	chr14	99353948	99354148	+	0.10367	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	55357	NM_009769	12224	Mm.30262	NM_009769	ENSMUSG00000005148	Klf5	4930520J07Rik|Bteb2|CKLF|IKLF	Kruppel-like factor 5	protein-coding	0.020000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-638	chr13	20183726	20183926	+	0.10367	NA	intron (NM_080288, intron 1 of 21)	intron (NM_080288, intron 1 of 21)	93319	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.015000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-2645	chrX	155262239	155262439	+	0.10367	NA	promoter-TSS (NM_001313718)	promoter-TSS (NM_001313718)	-104	NM_001313718	56360	Mm.268710	NM_019736	ENSMUSG00000025287	Acot9	0610041P13Rik|Acate2|C76421|MT-ACT48|MTE-2|U8|p48	acyl-CoA thioesterase 9	protein-coding	0.035000	0.527363			-69(ATTTACTTAACAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2266	chr7	98361322	98361522	+	0.10367	NA	promoter-TSS (NM_001168541)	promoter-TSS (NM_001168541)	-94	NM_001168539	244152	Mm.25317	NM_001024619	ENSMUSG00000049580	Tsku	9530051K01Rik|E2ig4|Lrrc54|Tsk	tsukushi, small leucine rich proteoglycan	protein-coding	0.100000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-1977	chr5	111888340	111888540	+	0.10367	NA	Intergenic	Intergenic	-126712	NR_045834	269683	Mm.136946	NM_207252	ENSMUSG00000085271	E130006D01Rik	Gm16018|Gm681	RIKEN cDNA E130006D01 gene	ncRNA	0.035000	0.437811		-61(TATGCATTTTCATA,+,0.00),-61(TATGCATTTTCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-778	chr14	50870382	50870582	+	0.10367	NA	promoter-TSS (NM_009351)	promoter-TSS (NM_009351)	72	NM_009351	21745	Mm.318736	NM_009351	ENSMUSG00000006281	Tep1	Tp1	telomerase associated protein 1	protein-coding	0.050000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-1455	chr2	120609341	120609541	+	0.10367	NA	promoter-TSS (NM_001159612)	promoter-TSS (NM_001159612)	59	NM_001290808	66296	Mm.221900	NM_025475	ENSMUSG00000027285	Haus2	1700101G24Rik|2410007P03Rik|AU020217|Cep27	HAUS augmin-like complex, subunit 2	protein-coding	0.085000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-2336	chr8	3687374	3687574	+	0.10367	NA	intron (NM_001253746, intron 7 of 9)	intron (NM_001253746, intron 7 of 9)	2916	NM_001253739	14128	Mm.1233	NM_013517	ENSMUSG00000005540	Fcer2a	CD23|Fce2|Fcer2|Ly-42	Fc receptor, IgE, low affinity II, alpha polypeptide	protein-coding	0.010000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-2242	chr7	80198365	80198565	+	0.10367	NA	promoter-TSS (NM_001360135)	promoter-TSS (NM_001360135)	24	NM_001360135	20352	Mm.275909	NM_013659	ENSMUSG00000030539	Sema4b	SemC|Semac|mKIAA1745	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4B	protein-coding	0.105000	0.736318			
ePOU_nocontrol_ChIP_peaks_unique-2243	chr7	80802974	80803174	+	0.10367	NA	intron (NM_016721, intron 1 of 37)	CpG	257	NM_016721	29875	Mm.207619	NM_016721	ENSMUSG00000030536	Iqgap1	AA682088|D7Ertd237e|D7Ertd257e|mKIAA0051	IQ motif containing GTPase activating protein 1	protein-coding	0.090000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-1676	chr3	122088294	122088494	+	0.10367	NA	intron (NM_007378, intron 11 of 49)	intron (NM_007378, intron 11 of 49)	43934	NM_007378	11304	Mm.3918	NM_007378	ENSMUSG00000028125	Abca4	AW050280|Abc10|Abcr|D430003I15Rik|RmP	ATP-binding cassette, sub-family A (ABC1), member 4	protein-coding	0.015000	0.507463			
Oct4_nocontrol_ChIP_peaks_unique-395	chr4	116708174	116708374	+	0.10367	NA	promoter-TSS (NR_151452)	promoter-TSS (NR_151452)	111	NM_025962	67096	Mm.252785	NM_025962	ENSMUSG00000028690	Mmachc	1810037K07Rik|CblC	methylmalonic aciduria cblC type, with homocystinuria	protein-coding	0.035000	0.522388			
Oct4_nocontrol_ChIP_peaks_unique-413	chr5	28071373	28071573	+	0.10367	NA	promoter-TSS (NM_153526)	promoter-TSS (NM_153526)	61	NM_153526	231070	Mm.30221	NM_153526	ENSMUSG00000045294	Insig1	1810013C12Rik|Insig-1	insulin induced gene 1	protein-coding	0.135000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-1791	chr4	86575337	86575537	+	0.10367	NA	promoter-TSS (NM_178376)	promoter-TSS (NM_178376)	-236	NM_178376	68441	Mm.31178	NM_178376	ENSMUSG00000070934	Rraga	1300010C19Rik|AI255374|FIP-1|RAGA	Ras-related GTP binding A	protein-coding	0.040000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-2116	chr6	88924896	88925096	+	0.10367	NA	Intergenic	L1ME3G|LINE|L1	22745	NM_011906	24100	Mm.284480	NM_011906	ENSMUSG00000002871	Tpra1	40kDa|Gpr175|Tpra40	transmembrane protein, adipocyte asscociated 1	protein-coding	0.010000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-1328	chr2	5063906	5064106	+	0.10367	NA	5' UTR (NM_001356487, exon 1 of 14)	5' UTR (NM_001356487, exon 1 of 14)	111	NM_001356487	71648	Mm.116942	NM_181848	ENSMUSG00000026672	Optn	4930441O07Rik|FIP2|HYPL|NRP	optineurin	protein-coding	0.110000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-1458	chr2	121642962	121643162	+	0.10367	NA	intron (NM_001360084, intron 1 of 13)	ERVB4_1C-LTR_Mm|LTR|ERVK	134569	NM_001369185	241627	Mm.293284	NM_030234	ENSMUSG00000027242	Wdr76	5830411K18Rik|6030457D09|AA517836	WD repeat domain 76	protein-coding	0.025000	0.502488			
ePOU_nocontrol_ChIP_peaks_unique-392	chr11	54478644	54478844	+	0.10367	NA	intron (NM_173753, intron 3 of 17)	intron (NM_173753, intron 3 of 17)	40565	NM_173753	216742	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.000000	0.253731			
ePOU_nocontrol_ChIP_peaks_unique-1087	chr17	29660403	29660603	+	0.10367	NA	promoter-TSS (NM_028791)	promoter-TSS (NM_028791)	-92	NM_028791	74157	Mm.390979	NM_028791	ENSMUSG00000024019	Cmtr1	1300018I05Rik|AI451264|Ftsjd2|MTr1	cap methyltransferase 1	protein-coding	0.075000	0.626866			
merged_common-588	chr4	63544788	63544988	+	0.10367	NA	5' UTR (NM_024173, exon 1 of 3)	5' UTR (NM_024173, exon 1 of 3)	123	NM_024173	66290	Mm.371615	NM_024173	ENSMUSG00000039105	Atp6v1g1	1810024D14Rik|AA960677|ATP6J|Atp6g1|VAG1|Vma10	ATPase, H+ transporting, lysosomal V1 subunit G1	protein-coding	0.080000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-1857	chr4	137487257	137487457	+	0.10367	NA	intron (NM_008305, intron 1 of 96)	intron (NM_008305, intron 1 of 96)	18554	NM_008305	15530	Mm.273662	NM_008305	ENSMUSG00000028763	Hspg2	AI852380|HSPG|Pcn|Plc|per	perlecan (heparan sulfate proteoglycan 2)	protein-coding	0.005000	0.467662			
merged_common-806	chr8	108188507	108188707	+	0.10367	NA	Intergenic	MER131|SINE?|SINE?	396070	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.015000	0.417910			
Oct4_nocontrol_ChIP_peaks_unique-405	chr4	137048715	137048915	+	0.10367	NA	promoter-TSS (NM_198248)	promoter-TSS (NM_198248)	-120	NM_198248	230848	Mm.31068	NM_198248	ENSMUSG00000060862	Zbtb40	BC059177|C230087D24|Gm571|mKIAA0478	zinc finger and BTB domain containing 40	protein-coding	0.080000	0.597015			
merged_common-739	chr7	73400081	73400281	+	0.09897	NA	intron (NM_177740, intron 2 of 3)	intron (NM_177740, intron 2 of 3)	-24407	NR_040325	319783	Mm.349813	NR_040324	ENSMUSG00000097756	A730056A06Rik	C76391	RIKEN cDNA A730056A06 gene	ncRNA	0.025000	0.502488			
merged_common-123	chr10	127685398	127685598	+	0.09894	NA	intron (NM_001113211, intron 1 of 8)	L1MB7|LINE|L1	8433	NM_001113211	210035	Mm.251075	NM_173732	ENSMUSG00000040195	Nemp1	Tmem194|Tmem194a	nuclear envelope integral membrane protein 1	protein-coding	0.005000	0.363184			34(CCATTGTCATGTACAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1050	chr17	9538515	9538715	+	0.09894	NA	Intergenic	Intergenic	131089	NM_001163836	67543	Mm.26987	NM_026226	ENSMUSG00000046173	Pabpc6	4932702K14Rik|AI428050|Pabpc3	poly(A) binding protein, cytoplasmic 6	protein-coding	0.000000	0.343284			39(TTTTGCATTAGAAAAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-475	chr11	107018335	107018535	+	0.09894	NA	Intergenic	Intergenic	-9788	NM_001163473	69066	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	0.010000	0.353234			
merged_common-564	chr3	138138143	138138343	+	0.09894	NA	intron (NM_001355051, intron 2 of 20)	RLTR10E|LTR|ERVK	5175	NM_001355052	17777	Mm.2941	NM_008642	ENSMUSG00000028158	Mttp	1810043K16Rik|MTP	microsomal triglyceride transfer protein	protein-coding	0.025000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-1952	chr5	90338677	90338877	+	0.09894	NA	intron (NM_030886, intron 1 of 33)	intron (NM_030886, intron 1 of 33)	27408	NM_030886	81702	Mm.245522	NM_030886	ENSMUSG00000055204	Ankrd17	4933425K22Rik|A130069E23Rik|A930008M01|AA407558|AA516750|AU040470|Foe|Gtar|Mask|mKIAA0697	ankyrin repeat domain 17	protein-coding	0.015000	0.422886			
merged_common-466	chr2	45461411	45461611	+	0.09894	NA	Intergenic	Intergenic	-235094	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.005000	0.343284			
merged_common-495	chr2	115723660	115723860	+	0.09894	NA	intron (NM_207264, intron 10 of 10)	intron (NM_207264, intron 10 of 10)	85035	NR_035476	100316703		NR_035476	ENSMUSG00000088606	Mir1951	mir-1951|mmu-mir-1951	microRNA 1951	ncRNA	0.025000	0.487562			
merged_common-826	chr9	46083745	46083945	+	0.09894	NA	intron (NM_027498, intron 1 of 24)	intron (NM_027498, intron 1 of 24)	71025	NM_027498	70661	Mm.219459	NM_027498	ENSMUSG00000034135	Sik3	5730525O22Rik|9030204A07Rik|AI447252|AI846254|AI849445|Qsk|SIK-3|mKIAA0999	SIK family kinase 3	protein-coding	0.020000	0.467662		-20(CATGAATATGCATG,+,0.00),-20(CATGAATATGCATG,-,0.00)	
merged_common-90	chr10	27435949	27436149	+	0.09894	NA	intron (NM_008481, intron 3 of 63)	intron (NM_008481, intron 3 of 63)	46183	NR_131034	75855	Mm.402080	NR_131034	ENSMUSG00000101636	4930579H20Rik	-	RIKEN cDNA 4930579H20 gene	ncRNA	0.015000	0.343284			44(ATTTGTATGATAAAAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-660	chr13	44730807	44731007	+	0.09894	NA	promoter-TSS (NM_001360281)	promoter-TSS (NM_001360281)	133	NM_001205044	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.075000	0.691542			
merged_common-369	chr17	53551553	53551753	+	0.09894	NA	Intergenic	Zaphod|DNA|hAT-Tip100	-12202	NM_173449	110332	Mm.444633	NM_173449	ENSMUSG00000044957	Pp2d1	4921523A10Rik	protein phosphatase 2C-like domain containing 1	protein-coding	0.005000	0.388060			-46(ATTTGCAAAAGCATGA,-,0.00)
merged_common-623	chr4	154964017	154964217	+	0.09894	NA	promoter-TSS (NM_001305804)	promoter-TSS (NM_001305804)	-6	NM_172990	269614	Mm.30042	NM_172990	ENSMUSG00000029056	Pank4	D030031I12Rik|R75150	pantothenate kinase 4	protein-coding	0.080000	0.601990			
merged_common-543	chr3	83288048	83288248	+	0.09894	NA	intron (NM_001357165, intron 10 of 19)	intron (NM_001357165, intron 10 of 19)	-158902	NM_001358023	100038599	Mm.381315	NM_001358023	ENSMUSG00000074517	Gm10710	-	predicted gene 10710	protein-coding	0.010000	0.318408			13(TTATGCATGAGAATTA,-,0.00)
merged_common-550	chr3	98012935	98013135	+	0.08323	NA	promoter-TSS (NM_010928)	promoter-TSS (NM_010928)	-503	NM_010928	18129	Mm.485843	NM_010928	ENSMUSG00000027878	Notch2	AI853703|N2	notch 2	protein-coding	0.025000	0.462687			
merged_common-450	chr2	16336616	16336816	+	0.08323	NA	Intergenic	Intergenic	-19588	NM_026162	67448	Mm.313938	NM_026162	ENSMUSG00000026748	Plxdc2	1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r	plexin domain containing 2	protein-coding	0.000000	0.308458			
merged_common-209	chr12	79895681	79895881	+	0.08323	NA	Intergenic	L1ME4a|LINE|L1	28952	NR_131075	77290	Mm.395042	NR_131073	ENSMUSG00000112765	9430078K24Rik	-	RIKEN cDNA 9430078K24 gene	ncRNA	0.010000	0.343284		9(CATGCATATTCATA,+,0.00),9(CATGCATATTCATA,-,0.00)	2(ATTTTTTCATGCATAT,+,0.00)
merged_common-727	chr7	19381987	19382187	+	0.08323	NA	promoter-TSS (NM_007949)	promoter-TSS (NM_007949)	70	NM_007949	13871	Mm.36524	NM_007949	ENSMUSG00000030400	Ercc2	AA407812|AU020867|AW240756|CXPD|Ercc-2|Mhdarco15|RCO015|XPD	excision repair cross-complementing rodent repair deficiency, complementation group 2	protein-coding	0.115000	0.706468			
merged_common-808	chr8	108908546	108908746	+	0.04140	NA	intron (NM_007496, intron 4 of 9)	intron (NM_007496, intron 4 of 9)	-28214	NR_037295	100526511		NR_037295	ENSMUSG00000093241	Mir3108	mir-3108|mmu-mir-3108	microRNA 3108	ncRNA	0.035000	0.412935		-60(TATACATATTCAGA,-,0.00)	-35(ATTTCCATTATAATGG,-,0.00),-31(CCATTATAATGGAAAG,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-231	chr16	46547910	46548110	+	0.04140	NA	Intergenic	Intergenic	-51043	NM_021495	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.005000	0.313433			
ePOU_nocontrol_ChIP_peaks_unique-851	chr15	25332164	25332364	+	0.04140	NA	Intergenic	Intergenic	81500	NM_027395	70350	Mm.29586	NM_027395	ENSMUSG00000045763	Basp1	2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22	brain abundant, membrane attached signal protein 1	protein-coding	0.030000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-114	chr1	139184681	139184881	+	0.04140	NA	Intergenic	Lx10|LINE|L1	192295	NM_133239	170788	Mm.95700	NM_133239	ENSMUSG00000063681	Crb1	7530426H14Rik|A930008G09Rik	crumbs family member 1, photoreceptor morphogenesis associated	protein-coding	0.000000	0.378109		-13(TATACATATACATA,-,0.00),16(TATGCATATGCATA,+,0.00),16(TATGCATATGCATA,-,0.00)	21(ATATGCATAAATATGT,-,0.00)
merged_common-755	chr7	109993582	109993782	+	0.04140	NA	Intergenic	Intergenic	-7452	NM_153525	233724	Mm.43212	NM_153525	ENSMUSG00000047554	Tmem41b	1500015G02Rik|1500031M19Rik|AU018901|D7Ertd70e|D7Ertd743e	transmembrane protein 41B	protein-coding	0.000000	0.442786			
merged_common-213	chr12	91496493	91496693	+	0.04140	NA	intron (NM_001113404, intron 2 of 8)	intron (NM_001113404, intron 2 of 8)	93056	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.020000	0.378109	30(CATGCATAATTCAAT,+,0.00),30(CATGCATAATTCAAT,-,0.00)		
merged_common-202	chr12	47397354	47397554	+	0.04140	NA	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	-578687	NM_001364634	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.025000	0.243781		-57(TGTACATATGCATA,+,0.00),-57(TGTACATATGCATA,-,0.00),-33(CGTACATATGCATA,+,0.00),-33(CGTACATATGCATA,-,0.00)	68(ATTTTTTTATGTATAT,+,0.00)
merged_common-294	chr15	43516551	43516751	+	0.03817	NA	intron (NM_025736, intron 10 of 10)	intron (NM_025736, intron 10 of 10)	39422	NM_025736	66736	Mm.244512	NM_025736	ENSMUSG00000022337	Emc2	4921531G14Rik|AV060620|AW209495|Ttc35	ER membrane protein complex subunit 2	protein-coding	0.005000	0.318408			
merged_common-570	chr4	5816671	5816871	+	0.02534	NA	Intergenic	Intergenic	92459	NM_001355716	242297	Mm.331470	NM_173426	ENSMUSG00000049119	Fam110b	1700012H17Rik|5031405P22|AW049855	family with sequence similarity 110, member B	protein-coding	0.000000	0.333333			-95(GCATGGTCTTTTAAAT,+,0.00)
merged_common	chr1	3914017	3914217	+	0.02534	NA	Intergenic	Intergenic	-242619	NM_001011874	497097	Mm.454496	NM_001011874	ENSMUSG00000051951	Xkr4	AY534250|Gm210|XRG4|mKIAA1889	X-linked Kx blood group related 4	protein-coding	0.000000	0.338308			
ePOU_nocontrol_ChIP_peaks_unique-1486	chr2	145055134	145055334	+	0.02534	NA	Intergenic	Intergenic	-112541	NM_001356497	94249	Mm.217171	NM_053195	ENSMUSG00000063873	Slc24a3	NCKX3	solute carrier family 24 (sodium/potassium/calcium exchanger), member 3	protein-coding	0.005000	0.338308			
ePOU_nocontrol_ChIP_peaks_unique-2095	chr6	63819602	63819802	+	0.02534	NA	intron (NM_001370966, intron 2 of 15)	Lx5c|LINE|L1	563696	NM_001370966									0.000000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-2339	chr8	4679796	4679996	+	0.02534	NA	Intergenic	Intergenic	66556	NM_001368404	233987	Mm.102799	NM_145591	ENSMUSG00000058748	Zfp958	-	zinc finger protein 958	protein-coding	0.010000	0.517413			
ePOU_nocontrol_ChIP_peaks_unique-1792	chr4	87663273	87663473	+	0.02534	NA	Intergenic	Intergenic	142950	NM_029931	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.005000	0.358209			
merged_common-455	chr2	21665745	21665945	+	0.02534	NA	intron (NM_001004761, intron 5 of 10)	intron (NM_001004761, intron 5 of 10)	298278	NM_001004761	241263	Mm.166647	NM_175706	ENSMUSG00000045967	Gpr158	5330427M13Rik|mKIAA1136	G protein-coupled receptor 158	protein-coding	0.000000	0.388060			74(ATATTGTTGTTCAGAT,+,0.00)
merged_common-733	chr7	45395636	45395836	+	0.02534	NA	promoter-TSS (NM_009224)	promoter-TSS (NM_009224)	6	NR_126538	20637	Mm.216386	NM_009224	ENSMUSG00000063511	Snrnp70	2700022N21Rik|3200002N22Rik|AI325098|R74807|Rnu1p70|Rnulp70|Snrp70|Srnp70|U1-70|U1-70K	small nuclear ribonucleoprotein 70 (U1)	protein-coding	0.090000	0.592040			
merged_common-302	chr15	75940979	75941179	+	0.02534	NA	5' UTR (NM_030199, exon 1 of 2)	5' UTR (NM_030199, exon 1 of 2)	127	NM_030199	78834	Mm.273264	NM_030199	ENSMUSG00000050846	Zfp623	2610029D06Rik|AI847036	zinc finger protein 623	protein-coding	0.125000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-2151	chr6	122608449	122608649	+	0.02534	NA	intron (NM_008108, intron 1 of 1)	intron (NM_008108, intron 1 of 1)	1538	NM_008108	14562	Mm.299742	NM_008108	ENSMUSG00000030117	Gdf3	C78318|Gdf-3|Vgr-2|Vgr2|ecat9	growth differentiation factor 3	protein-coding	0.005000	0.467662			41(ATCTGAATGCCAATGC,-,0.00)
merged_common-167	chr11	98741906	98742106	+	0.02534	NA	5' UTR (NM_001313983, exon 1 of 10)	5' UTR (NM_001313983, exon 1 of 10)	221	NM_001313983	21833	Mm.265917	NM_178060	ENSMUSG00000058756	Thra	6430529J03Rik|AW259572|Erba|Nr1a1|Rvr|T3R[a]|T3Ralpha|Thra1|Thra2|c-erbA-1|c-erbA-alpha|c-erbAalpha	thyroid hormone receptor alpha	protein-coding	0.105000	0.701493		24(CATTAATATGCAAA,+,0.00),30(TATGCAAATGCATC,+,0.00),30(TATGCAAATGCATC,-,0.00)	23(GCATTAATATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-928	chr15	95005644	95005844	+	0.02534	NA	intron (NM_178789, intron 5 of 7)	intron (NM_178789, intron 5 of 7)	143574	NR_015482	100043315	Mm.159041	NR_015482	ENSMUSG00000100603	LOC100043315	-	uncharacterized LOC100043315	ncRNA	0.005000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-1523	chr2	180273574	180273774	+	0.02534	NA	promoter-TSS (NM_145851)	promoter-TSS (NM_145851)	-209	NM_145851	252966	Mm.386884	NM_145851	ENSMUSG00000038990	Cables2	ik3-2	CDK5 and Abl enzyme substrate 2	protein-coding	0.110000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-1386	chr2	60986319	60986519	+	0.02534	NA	Intergenic	Intergenic	-11268	NR_045335	100038493	Mm.388076	NR_045335	ENSMUSG00000075325	Gm13582	-	predicted gene 13582	ncRNA	0.005000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-953	chr16	12887439	12887639	+	0.02534	NA	Intergenic	Intergenic	76149	NR_040507	75493	Mm.396146	NR_040507	ENSMUSG00000101565	1700003L19Rik	-	RIKEN cDNA 1700003L19 gene	ncRNA	0.005000	0.417910			-60(ATATGCAGAACAATGA,-,0.00),-29(GTCTTCTCATTCAAAA,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-82	chr11	51786348	51786548	+	0.02534	NA	intron (NM_025535, intron 4 of 6)	B3|SINE|B2	22785	NM_025535	66397	Mm.196592	NM_025535	ENSMUSG00000020386	Sar1b	2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb	secretion associated Ras related GTPase 1B	protein-coding	0.015000	0.502488			
ePOU_nocontrol_ChIP_peaks_unique-1820	chr4	108831089	108831289	+	0.02534	NA	intron (NM_001356361, intron 1 of 5)	intron (NM_001356361, intron 1 of 5)	2451	NM_027453	70533	Mm.379178	NM_027453	ENSMUSG00000028568	Btf3l4	4632412E09Rik|5730434I03Rik|AI316863|AU022207|AW552446	basic transcription factor 3-like 4	protein-coding	0.010000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-962	chr16	17383886	17384086	+	0.02534	NA	intron (NM_001001983, intron 3 of 54)	intron (NM_001001983, intron 3 of 54)	-22014	NM_023348	67474	Mm.271992	NM_023348	ENSMUSG00000022765	Snap29	1300018G05Rik|AI891940|AU020222|BB131856|Gs32	synaptosomal-associated protein 29	protein-coding	0.005000	0.298507			-21(AATTTTTCATTTTAAT,+,0.00),-15(TCATTTTAATGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1770	chr4	62901469	62901669	+	0.02534	NA	Intergenic	Intergenic	-63998	NM_001369118	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.005000	0.308458	-4(AATGAATAATTTAAA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2501	chr9	25151663	25151863	+	0.02534	NA	promoter-TSS (NM_020586)	promoter-TSS (NM_020586)	18	NM_020586	80517	Mm.142843	NM_020586	ENSMUSG00000008429	Herpud2	5031400M07Rik|AB041580	HERPUD family member 2	protein-coding	0.130000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-130	chr1	156558500	156558700	+	0.02534	NA	promoter-TSS (NM_001136104)	promoter-TSS (NM_001136104)	-187	NM_001136104	11352	Mm.329515	NM_009595	ENSMUSG00000026596	Abl2	AA536808|Abll|Arg	v-abl Abelson murine leukemia viral oncogene 2 (arg, Abelson-related gene)	protein-coding	0.080000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-754	chr14	21500848	21501048	+	0.02534	NA	intron (NM_017479, intron 1 of 16)	CpG	1163	NM_017479	54169	Mm.248967	NM_017479	ENSMUSG00000021767	Kat6b	AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf	K(lysine) acetyltransferase 6B	protein-coding	0.085000	0.616915			73(TCTTTCTCAGGCAGAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-472	chr7	65644935	65645135	+	0.02534	NA	exon (NM_172310, exon 1 of 19)	exon (NM_172310, exon 1 of 19)	137	NM_172310	272396	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.115000	0.751244			
Oct4_nocontrol_ChIP_peaks_unique-262	chr18	58659561	58659761	+	0.02534	NA	exon (NM_025478, exon 1 of 5)	exon (NM_025478, exon 1 of 5)	179	NM_025478	66307	Mm.182574	NM_025478	ENSMUSG00000024601	Isoc1	2610034N03Rik	isochorismatase domain containing 1	protein-coding	0.125000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1000	chr16	42651955	42652155	+	0.02534	NA	Intergenic	Intergenic	223532	NR_040521	75722	Mm.243747	NR_040521	ENSMUSG00000075070	4932412D23Rik	Gm10809	RIKEN cDNA 4932412D23 gene	ncRNA	0.010000	0.353234	15(TATGCATTATTCATG,+,0.00),15(TATGCATTATTCATG,-,0.00)		-39(ATCTGAAAAAAAAAAA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-97	chr11	99703999	99704199	+	0.02534	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-38139	NM_026834	68768	Mm.416844	NM_026834	ENSMUSG00000075566	Krtap4-6	1110054P19Rik	keratin associated protein 4-6	protein-coding	0.010000	0.348259	39(GATGAATAATGCGTT,+,0.00)	-22(CTTACATATTCATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1786	chr4	83525096	83525296	+	0.02534	NA	promoter-TSS (NM_001355378)	promoter-TSS (NM_001355378)	-349	NM_001355549	320226	Mm.180032	NM_029117	ENSMUSG00000052407	Ccdc171	4930418J05Rik|4930473A06Rik|A330015D16Rik	coiled-coil domain containing 171	protein-coding	0.070000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-2123	chr6	97179203	97179403	+	0.02534	NA	promoter-TSS (NM_001081111)	promoter-TSS (NM_001081111)	-179	NM_001081111	232286	Mm.30893	NM_001081111	ENSMUSG00000030059	Tmf1	7030402D04Rik|Gm153|Tmf1`	TATA element modulatory factor 1	protein-coding	0.100000	0.636816			
Oct4_nocontrol_ChIP_peaks_unique-429	chr5	150690170	150690370	+	0.02534	NA	intron (NM_175310, intron 1 of 34)	intron (NM_175310, intron 1 of 34)	16443	NM_175310	100710	Mm.32959	NM_175310	ENSMUSG00000034021	Pds5b	AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979	PDS5 cohesin associated factor B	protein-coding	0.005000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-1425	chr2	102959465	102959665	+	0.02534	NA	Intergenic	MER74A|LTR|ERVL	-57900	NM_001039150	12505	Mm.423621	NM_009851	ENSMUSG00000005087	Cd44	AU023126|AW121933|AW146109|HERMES|Ly-24|Pgp-1	CD44 antigen	protein-coding	0.000000	0.472637	-57(TTTGCATAATTCATC,+,0.00),-57(TTTGCATAATTCATC,-,0.00)		66(ATTTGCATATCAAAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2502	chr9	31673680	31673880	+	0.02534	NA	Intergenic	L1M5|LINE|L1	-209542	NM_144936	235135	Mm.390134	NM_144936	ENSMUSG00000041737	Tmem45b	BC018222	transmembrane protein 45b	protein-coding	0.005000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-1372	chr2	44621604	44621804	+	0.02534	NA	intron (NM_001362986, intron 6 of 10)	L1MA5A|LINE|L1	239918	NM_172662	227835	Mm.314312	NM_172662	ENSMUSG00000036890	Gtdc1	E330008O22Rik	glycosyltransferase-like domain containing 1	protein-coding	0.000000	0.318408			-61(ATCTACATATGAATGA,-,0.00)
merged_common-518	chr3	5860503	5860703	+	0.02534	NA	Intergenic	LSU-rRNA_Hsa|rRNA|rRNA	-284355	NM_008994	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.075000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-554	chr12	59053459	59053659	+	0.02534	NA	intron (NM_001306217, intron 1 of 4)	Lx9|LINE|L1	7913	NM_001306217	78232	Mm.290070	NM_030057	ENSMUSG00000020993	Trappc6b	5830498C14Rik|C79212	trafficking protein particle complex 6B	protein-coding	0.010000	0.447761			
Oct4_nocontrol_ChIP_peaks_unique-284	chr19	47450882	47451082	+	0.02534	NA	intron (NM_001164717, intron 1 of 13)	intron (NM_001164717, intron 1 of 13)	13429	NM_008018	14218	Mm.127560	NM_008018	ENSMUSG00000053617	Sh3pxd2a	2310014D11Rik|AA589508|AI256723|AI413738|C230050L11|EG329070|Fish|Gm5098|Sh3md1|TSK5|Tks5	SH3 and PX domains 2A	protein-coding	0.005000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-906	chr15	79038948	79039148	+	0.02534	NA	TTS (NM_013847)	TTS (NM_013847)	-2837	NM_015738	14429	Mm.390805	NM_015738	ENSMUSG00000114755	Galr3	Galnr3	galanin receptor 3	protein-coding	0.010000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-1412	chr2	84382307	84382507	+	0.02534	NA	intron (NM_018782, intron 2 of 15)	intron (NM_018782, intron 2 of 15)	42859	NM_018782	54598	Mm.75467	NM_018782	ENSMUSG00000059588	Calcrl	AV071593|CRLR	calcitonin receptor-like	protein-coding	0.020000	0.333333		-7(TATGCATATGTATA,+,0.00),-7(TATGCATATGTATA,-,0.00)	
merged_common-529	chr3	51900661	51900861	+	0.02534	NA	intron (NM_001004176, intron 1 of 4)	(TG)n|Simple_repeat|Simple_repeat	204245	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.015000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-854	chr15	30908031	30908231	+	0.02534	NA	intron (NM_001355502, intron 15 of 21)	L1MEc|LINE|L1	-130995	NR_045186	73784	Mm.66947	NR_045186	ENSMUSG00000115474	4930430F21Rik	-	RIKEN cDNA 4930430F21 gene	ncRNA	0.005000	0.328358			61(GAATTGTTATGCAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1257	chr19	5803414	5803614	+	0.02534	NA	promoter-TSS (NR_002847)	promoter-TSS (NR_002847)	-842	NR_002847	72289	Mm.298256	NR_002847	ENSMUSG00000092341	Malat1	2210401K01Rik|9430072K23Rik|AI647968|Neat2	metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA)	ncRNA	0.095000	0.636816			
Oct4_nocontrol_ChIP_peaks_unique-174	chr14	45388663	45388863	+	0.02534	NA	promoter-TSS (NM_019425)	promoter-TSS (NM_019425)	33	NM_019425	54342	Mm.312945	NM_019425	ENSMUSG00000037722	Gnpnat1	AU017428|AU040593|EMeg32|Gpnat1|Gsnpat	glucosamine-phosphate N-acetyltransferase 1	protein-coding	0.130000	0.776119			
ePOU_nocontrol_ChIP_peaks_unique-615	chr12	110923176	110923376	+	0.02534	NA	intron (NM_001081057, intron 6 of 20)	intron (NM_001081057, intron 6 of 20)	34012	NM_175336	104859	Mm.35583	NM_175336	ENSMUSG00000021275	Tecpr2	4930573I19Rik|AI604920|mKIAA0297	tectonin beta-propeller repeat containing 2	protein-coding	0.010000	0.388060			-50(ATTAAAAAGACAAAAA,-,0.00)
merged_common-589	chr4	70347481	70347681	+	0.02534	NA	intron (NM_145990, intron 11 of 36)	intron (NM_145990, intron 11 of 36)	62854	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.020000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-107	chr1	133363900	133364100	+	0.02534	NA	exon (NM_175443, exon 1 of 8)	exon (NM_175443, exon 1 of 8)	428	NM_175443	214253	Mm.52111	NM_175443	ENSMUSG00000070644	Etnk2	4933417N20Rik|AI197444|EKI 2|Eki2|Tuc1	ethanolamine kinase 2	protein-coding	0.105000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-874	chr15	52699877	52700077	+	0.02534	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-12468	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.010000	0.318408		3(AATGCATATGTAAA,-,0.00)	74(ATTTGCATGGAAATGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1476	chr2	136779826	136780026	+	0.02534	NA	intron (NM_001355254, intron 7 of 7)	intron (NM_001355254, intron 7 of 7)	66240	NM_001355254	20614	Mm.45953	NM_011428	ENSMUSG00000027273	Snap25	Bdr|GENA70|SNAP-25|SUP|sp	synaptosomal-associated protein 25	protein-coding	0.000000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-2592	chr9	106887066	106887266	+	0.02534	NA	promoter-TSS (NM_175402)	promoter-TSS (NM_175402)	-166	NM_175402	109095	Mm.431589	NM_175402	ENSMUSG00000074102	Rbm15b	1810017N16Rik	RNA binding motif protein 15B	protein-coding	0.160000	0.731343			
Oct4_nocontrol_ChIP_peaks_unique-172	chr14	26669564	26669764	+	0.02534	NA	promoter-TSS (NR_106132)	promoter-TSS (NR_106132)	-56	NR_106132	102465773		NR_106132	ENSMUSG00000098751	Mir7672	Gm27314|mmu-mir-7672	microRNA 7672	ncRNA	0.105000	0.646766			
Oct4_nocontrol_ChIP_peaks_unique-258	chr18	53942156	53942356	+	0.02534	NA	intron (NM_152809, intron 10 of 12)	L1_Mur3|LINE|L1	80143	NM_152809	70425	Mm.368668	NM_152809	ENSMUSG00000073563	Csnk1g3	3300002K07Rik|C330049O21Rik	casein kinase 1, gamma 3	protein-coding	0.010000	0.358209			52(CTTTTGTTATGAAGAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1725	chr4	15249175	15249375	+	0.02534	NA	Intergenic	MLTR25A|LTR|ERVK	-16545	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.005000	0.432836			
Oct4_nocontrol_ChIP_peaks_unique-355	chr3	89773175	89773375	+	0.02534	NA	promoter-TSS (NM_027315)	promoter-TSS (NM_027315)	125	NR_130957	74034	Mm.386816	NR_130957	ENSMUSG00000042579	4632404H12Rik	-	RIKEN cDNA 4632404H12 gene	ncRNA	0.120000	0.696517			
Oct4_nocontrol_ChIP_peaks_unique-146	chr13	44939369	44939569	+	0.02534	NA	intron (NM_025772, intron 7 of 9)	RLTR24|LTR|ERV1	62627	NM_025772	94245	Mm.352311	NM_025772	ENSMUSG00000057531	Dtnbp1	5430437B18Rik|AW048963|Bloc1s8|dysbindin|sdy	dystrobrevin binding protein 1	protein-coding	0.010000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-1109	chr17	51012979	51013179	+	0.02534	NA	intron (NM_028162, intron 3 of 21)	intron (NM_028162, intron 3 of 21)	146299	NM_001285993	72238	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.005000	0.323383			-13(ATTTTCACAACAATAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1745	chr4	41417136	41417336	+	0.02534	NA	intron (NM_024241, intron 3 of 12)	intron (NM_024241, intron 3 of 12)	47612	NM_024241	109242	Mm.370288	NM_024241	ENSMUSG00000028438	Kif24	4933425J19Rik|9430029L23Rik	kinesin family member 24	protein-coding	0.000000	0.348259			
merged_common-105	chr10	74342320	74342520	+	0.02534	NA	intron (NM_001142747, intron 14 of 26)	intron (NM_001142747, intron 14 of 26)	520553	NM_001142740	11994	Mm.338933	NM_023115	ENSMUSG00000052613	Pcdh15	BB078305|Gm9815|Ush1f|av|nmf19|roda	protocadherin 15	protein-coding	0.005000	0.432836			-42(ATTTGCATACCAATTG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-575	chr12	75844333	75844533	+	0.02534	NA	intron (NM_001005510, intron 1 of 115)	intron (NM_001005510, intron 1 of 115)	26115	NM_001005510	319565	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.000000	0.442786			30(ATTAGCAAGAGAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2374	chr8	44938189	44938389	+	0.02534	NA	Intergenic	CpG	-11919	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.120000	0.721393			
Oct4_nocontrol_ChIP_peaks_unique-105	chr11	116004911	116005111	+	0.02534	NA	intron (NM_001005608, intron 32 of 39)	CpG	7708	NM_016905	14635	Mm.2820	NM_016905	ENSMUSG00000020766	Galk1	AA409894|GALK|Gk|Glk|Glk1	galactokinase 1	protein-coding	0.125000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-2211	chr7	38227785	38227985	+	0.02534	NA	intron (NM_024413, intron 1 of 1)	intron (NM_024413, intron 1 of 1)	109	NM_024413	72287	Mm.333798	NM_024413	ENSMUSG00000074170	Plekhf1	1810013P09Rik|APPD|LAPF|PHAFIN1|ZFYVE15	pleckstrin homology domain containing, family F (with FYVE domain) member 1	protein-coding	0.050000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-2555	chr9	72838340	72838540	+	0.02534	NA	intron (NM_175485, intron 2 of 19)	intron (NM_175485, intron 2 of 19)	31166	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.005000	0.383085			
Oct4_nocontrol_ChIP_peaks_unique-544	chr9	98362867	98363067	+	0.02534	NA	intron (NM_001357446, intron 2 of 3)	intron (NM_001357446, intron 2 of 3)	-59994	NM_011254	19659	Mm.279741	NM_011254	ENSMUSG00000046402	Rbp1	CRBPI|Crbp|Rbp-1	retinol binding protein 1, cellular	protein-coding	0.005000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-1675	chr3	121418125	121418325	+	0.02534	NA	Intergenic	Intergenic	-8316	NM_028044	71994	Mm.275555	NM_028044	ENSMUSG00000053931	Cnn3	1600014M03Rik|C85854|Calpo3	calponin 3, acidic	protein-coding	0.020000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-466	chr11	101548566	101548766	+	0.02534	NA	intron (NM_009764, intron 2 of 22)	intron (NM_009764, intron 2 of 22)	3289	NM_009764	12189	Mm.244975	NM_009764	ENSMUSG00000017146	Brca1	-	breast cancer 1, early onset	protein-coding	0.000000	0.427861			-36(GCACTCTCATGTAAAT,+,0.00),44(CCATTGTTATTCTGAT,+,0.00),50(TTATTCTGATGCTATT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2409	chr8	72475035	72475235	+	0.02534	NA	promoter-TSS (NM_138585)	promoter-TSS (NM_138585)	98	NM_138585	27967	Mm.30136	NM_138585	ENSMUSG00000052488	Cherp	5730408I11Rik|D8Wsu96e|DAN16|Scaf6	calcium homeostasis endoplasmic reticulum protein	protein-coding	0.130000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-2550	chr9	70304958	70305158	+	0.02534	NA	intron (NM_181072, intron 4 of 27)	intron (NM_181072, intron 4 of 27)	97708	NM_181072	71602	Mm.249311	NM_181072	ENSMUSG00000032220	Myo1e	2310020N23Rik|9130023P14Rik|AA407778|myosin-1e|myr 3	myosin IE	protein-coding	0.025000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-1224	chr18	68802871	68803071	+	0.02534	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	63571	NR_105774	102465183		NR_105774	ENSMUSG00000099300	Mir6356	Gm27461|mmu-mir-6356	microRNA 6356	ncRNA	0.010000	0.393035			-78(ATGTGCATGATAAAGA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-452	chr6	119479169	119479369	+	0.02534	NA	promoter-TSS (NM_133940)	promoter-TSS (NM_133940)	-399	NM_133940	101358	Mm.125477	NM_133940	ENSMUSG00000030019	Fbxl14	AW322056|Fbx14l	F-box and leucine-rich repeat protein 14	protein-coding	0.150000	0.756219			
Oct4_nocontrol_ChIP_peaks_unique-440	chr6	76053077	76053277	+	0.02534	NA	Intergenic	Intergenic	-1189300	NM_001362109	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.005000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-2392	chr8	66486401	66486601	+	0.02534	NA	promoter-TSS (NM_025465)	promoter-TSS (NM_025465)	29	NM_001357208	66282	Mm.294985	NM_025465	ENSMUSG00000025591	Tma16	1810029B16Rik	translation machinery associated 16	protein-coding	0.075000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-337	chr11	3409270	3409470	+	0.02534	NA	promoter-TSS (NM_010718)	promoter-TSS (NM_010718)	-132	NM_010718	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.070000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-584	chr12	82139693	82139893	+	0.02534	NA	Intergenic	Intergenic	-30223	NM_001167983	217692	Mm.261333	NM_172579	ENSMUSG00000042700	Sipa1l1	4931426N11Rik|AW213287|Spar|mKIAA0440	signal-induced proliferation-associated 1 like 1	protein-coding	0.000000	0.303483			
ePOU_nocontrol_ChIP_peaks_unique-1756	chr4	52172441	52172641	+	0.02534	NA	Intergenic	Intergenic	-121431	NR_040668	329844	Mm.128934	NR_040668	ENSMUSG00000085515	C630028M04Rik	-	RIKEN cDNA C630028M04 gene	ncRNA	0.005000	0.363184			
Oct4_nocontrol_ChIP_peaks_unique-295	chr2	20519798	20519998	+	0.02534	NA	exon (NM_029895, exon 2 of 19)	exon (NM_029895, exon 2 of 19)	385	NM_001369134	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.070000	0.597015			
ePOU_nocontrol_ChIP_peaks_unique-458	chr11	98660521	98660721	+	0.02534	NA	Intergenic	Intergenic	-3730	NM_021347	57911	Mm.458085	NM_021347	ENSMUSG00000017204	Gsdma	BB149167|Gsdm|Gsdm1|Gsdma1|H312E	gasdermin A	protein-coding	0.025000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-453	chr11	96114270	96114470	+	0.02534	NA	Intergenic	Intergenic	-2408	NM_001271018	76815	Mm.296049	NM_029755	ENSMUSG00000006056	Calcoco2	2410154J16Rik|C77254|Ndp52|Ndp52l1	calcium binding and coiled-coil domain 2	protein-coding	0.010000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-1078	chr17	26767136	26767336	+	0.02534	NA	intron (NM_029870, intron 8 of 8)	intron (NM_029870, intron 8 of 8)	-13843	NM_172149	224630	Mm.21795	NM_172149	ENSMUSG00000024191	Bnip1	2010005M06Rik|5930429G21Rik|Sec20	BCL2/adenovirus E1B interacting protein 1	protein-coding	0.010000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-1664	chr3	114592366	114592566	+	0.02534	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-311612	NM_153458	229759	Mm.54183	NM_153157	ENSMUSG00000027965	Olfm3	B230206G02Rik	olfactomedin 3	protein-coding	0.000000	0.333333			-19(ATTTACATAAGCAAAT,-,0.00)
merged_common-454	chr2	20655170	20655370	+	0.02534	NA	intron (NM_001081006, intron 3 of 21)	intron (NM_001081006, intron 3 of 21)	135757	NM_001369134	208618	Mm.237935	NM_029895	ENSMUSG00000036617	Etl4	6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt	enhancer trap locus 4	protein-coding	0.005000	0.407960			-27(CATTGCATGATAATAC,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-371	chr4	6968897	6969097	+	0.02534	NA	intron (NM_145711, intron 1 of 8)	intron (NM_145711, intron 1 of 8)	21726	NM_145711	252838	Mm.435828	NM_145711	ENSMUSG00000041272	Tox	1700007F02Rik	thymocyte selection-associated high mobility group box	protein-coding	0.010000	0.457711			-68(CTTTTGTCTTGCAGAT,+,0.00),29(CTACTGTTATTCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1629	chr3	89214045	89214245	+	0.02534	NA	promoter-TSS (NM_001161824)	promoter-TSS (NM_001161824)	-238	NM_001357367	17827	Mm.280943	NM_013604	ENSMUSG00000064068	Mtx1	Gcap6|Mtx	metaxin 1	protein-coding	0.115000	0.716418			
Oct4_nocontrol_ChIP_peaks_unique-219	chr15	96270365	96270565	+	0.02534	NA	non-coding (NR_030690, exon 1 of 1)	non-coding (NR_030690, exon 1 of 1)	4810	NR_030690	319722	Mm.103823	NR_030690		E330033B04Rik	-	RIKEN cDNA E330033B04 gene	ncRNA	0.020000	0.512438			
ePOU_nocontrol_ChIP_peaks_unique-2509	chr9	41637076	41637276	+	0.02534	NA	Intergenic	Intergenic	55250	NR_029822	387236		NR_029822	ENSMUSG00000093354	Mir125b-1	Mirn125b|Mirn125b-1|mir-125b-1	microRNA 125b-1	ncRNA	0.005000	0.402985			-63(CCTCTTTAATTCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2373	chr8	44534023	44534223	+	0.02534	NA	Intergenic	Intergenic	-416085	NM_001081286	14107	Mm.27365	NM_001081286	ENSMUSG00000070047	Fat1	2310038E12Rik|AU023433|Fath|mFat1	FAT atypical cadherin 1	protein-coding	0.015000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-1163	chr18	13712635	13712835	+	0.02534	NA	intron (NM_145492, intron 7 of 7)	RLTR12A|LTR|ERVK	259998	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.005000	0.417910			-8(CTCGTGTTATTCAAAT,+,0.00),54(ACATTGTAATGCTTAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-379	chr4	45381294	45381494	+	0.02534	NA	Intergenic	RLTR13G|LTR|ERVK	27372	NM_001009949	230125	Mm.260210	NM_001009949	ENSMUSG00000045973	Slc25a51	9130208E07Rik|D130005A03Rik|Gm138|Mcart1	solute carrier family 25, member 51	protein-coding	0.005000	0.378109			-20(ACTTTATAATGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1726	chr4	15281303	15281503	+	0.02534	NA	intron (NM_181401, intron 2 of 2)	intron (NM_181401, intron 2 of 2)	15583	NM_181401	100201	Mm.394111	NM_181401	ENSMUSG00000043252	Tmem64	9630015D15Rik|AI790744|AV300874	transmembrane protein 64	protein-coding	0.015000	0.338308			
Oct4_nocontrol_ChIP_peaks_unique-433	chr6	34536335	34536535	+	0.02534	NA	Intergenic	Charlie15b|DNA|hAT-Charlie	60079	NR_156731	12183	Mm.282863	NM_007563	ENSMUSG00000038871	Bpgm	AI323730|AL022789|C86192	2,3-bisphosphoglycerate mutase	protein-coding	0.020000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-1148	chr17	84258849	84259049	+	0.02534	NA	intron (NM_183021, intron 30 of 37)	intron (NM_183021, intron 30 of 37)	-71002	NM_001001806	12193	Mm.259321	NM_001001806	ENSMUSG00000045817	Zfp36l2	Brf2|ERF2|Tis11d	zinc finger protein 36, C3H type-like 2	protein-coding	0.005000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-2511	chr9	44850486	44850686	+	0.02534	NA	intron (NM_001357549, intron 2 of 35)	intron (NM_001357549, intron 2 of 35)	30703	NM_001357549	214162	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0.010000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-1992	chr5	123955312	123955512	+	0.02534	NA	intron (NM_001134767, intron 9 of 12)	intron (NM_001134767, intron 9 of 12)	-18216	NM_145070	29816	Mm.149954	NM_145070	ENSMUSG00000000915	Hip1r	AA410023|mKIAA0655	huntingtin interacting protein 1 related	protein-coding	0.015000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-2054	chr6	30693902	30694102	+	0.02534	NA	promoter-TSS (NR_130781)	promoter-TSS (NR_130781)	-253	NM_031998	83922	Mm.65389	NM_031998	ENSMUSG00000029790	Cep41	1700017E11Rik|2810431D15Rik|Tsga14	centrosomal protein 41	protein-coding	0.040000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-1732	chr4	29084990	29085190	+	0.02534	NA	intron (NR_151693, intron 2 of 2)	intron (NR_151693, intron 2 of 2)	17011	NR_151693	102634169		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0.000000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-2027	chr6	7744301	7744501	+	0.02534	NA	Intergenic	RLTR13B3|LTR|ERVK	-51192	NM_012055	27053	Mm.2942	NM_012055	ENSMUSG00000029752	Asns	-	asparagine synthetase	protein-coding	0.010000	0.383085	-68(CATGAATAATGCAAT,+,0.00),-68(CATGAATAATGCAAT,-,0.00)		
merged_common-303	chr15	76948518	76948718	+	0.02534	NA	5' UTR (NM_054099, exon 1 of 4)	5' UTR (NM_054099, exon 1 of 4)	357	NM_054099	117171	Mm.322968	NM_054099	ENSMUSG00000063236	1110038F14Rik	-	RIKEN cDNA 1110038F14 gene	protein-coding	0.090000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-102	chr1	130727014	130727214	+	0.02534	NA	intron (NM_001162415, intron 1 of 15)	intron (NM_001162415, intron 1 of 15)	2139	NM_001162415	18640	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	0.010000	0.318408		-92(CATGAATATGAATA,+,0.00),-92(CATGAATATGAATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-125	chr1	151737377	151737577	+	0.02534	NA	Intergenic	Intergenic	17250	NR_151474	102640772		NR_151473	ENSMUSG00000100594	2810414N06Rik	-	RIKEN cDNA 2810414N06 gene	ncRNA	0.005000	0.522388			
Oct4_nocontrol_ChIP_peaks_unique-21	chr1	93551326	93551526	+	0.02534	NA	intron (NM_145519, intron 2 of 26)	intron (NM_145519, intron 2 of 26)	39322	NM_145519	227377	Mm.243091	NM_145519	ENSMUSG00000034066	Farp2	AI465173|BC009153|D030026M03Rik|Fir|mKIAA0793	FERM, RhoGEF and pleckstrin domain protein 2	protein-coding	0.005000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-728	chr13	107831311	107831511	+	0.02534	NA	intron (NM_145456, intron 5 of 17)	intron (NM_145456, intron 5 of 17)	58653	NM_145456	67263	Mm.490418	NM_145456		Zswim6	2900036G02Rik|mKIAA1577	zinc finger SWIM-type containing 6	protein-coding	0.045000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-2171	chr6	148564377	148564577	+	0.02534	NA	Intergenic	Intergenic	49832	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.005000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-692	chr13	79048546	79048746	+	0.02534	NA	Intergenic	Intergenic	-849773	NM_010151	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.000000	0.263682			-96(ATTTTAAAAACAATTT,-,0.00),-7(ATTTTAAAGAAAAACA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1388	chr2	63021583	63021783	+	0.02534	NA	intron (NM_133207, intron 2 of 15)	L1MC1|LINE|L1	162604	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.000000	0.303483			
ePOU_nocontrol_ChIP_peaks_unique-1757	chr4	53227879	53228079	+	0.02534	NA	Intergenic	Intergenic	-18217	NR_040665	78180	Mm.243847	NR_040665	ENSMUSG00000086947	4930522O17Rik	-	RIKEN cDNA 4930522O17 gene	ncRNA	0.025000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-413	chr11	64115730	64115930	+	0.02534	NA	Intergenic	Intergenic	36346	NR_033780	66456	Mm.124828	NR_033780	ENSMUSG00000087497	2810001G20Rik	AW045514	RIKEN cDNA 2810001G20 gene	ncRNA	0.005000	0.407960			-77(ATTTGCATGAGACTTA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1084	chr17	28313075	28313275	+	0.02534	NA	promoter-TSS (NR_028297)	promoter-TSS (NR_028297)	-355	NM_001163819	72775	Mm.201859	NM_028348	ENSMUSG00000007570	Fance	2810451D06Rik|AI415634|AW209126	Fanconi anemia, complementation group E	protein-coding	0.045000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-1166	chr18	19685970	19686170	+	0.02534	NA	Intergenic	Intergenic	316027	NM_001291809	13507	Mm.89935	NM_007882	ENSMUSG00000059898	Dsc3	5430426I24Rik	desmocollin 3	protein-coding	0.005000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-483	chr11	115933585	115933785	+	0.02534	NA	promoter-TSS (NM_130454)	promoter-TSS (NM_130454)	26	NM_020483	57230	Mm.267810	NM_020483	ENSMUSG00000020755	Sap30bp	2700016D05Rik|Hcngp	SAP30 binding protein	protein-coding	0.060000	0.512438			
ePOU_nocontrol_ChIP_peaks_unique-1181	chr18	32837106	32837306	+	0.02534	NA	promoter-TSS (NM_001110016)	promoter-TSS (NM_001110016)	-19	NM_001110016	225348	Mm.38816	NM_144863	ENSMUSG00000038299	Wdr36	5730444A13Rik|Ta-wdrp	WD repeat domain 36	protein-coding	0.075000	0.582090			
ePOU_nocontrol_ChIP_peaks_unique-2598	chr9	110305240	110305440	+	0.02534	NA	exon (NM_001081381, exon 1 of 7)	exon (NM_001081381, exon 1 of 7)	148	NM_001081381	72341	Mm.374250	NM_001081381	ENSMUSG00000054836	Elp6	2610001P13Rik|2610002I17Rik|AV159994|Tmem103	elongator acetyltransferase complex subunit 6	protein-coding	0.070000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-786	chr14	59206068	59206268	+	0.02534	NA	intron (NM_001360611, intron 1 of 4)	intron (NM_001360611, intron 1 of 4)	4940	NM_027764	71330	Mm.234195	NM_027764	ENSMUSG00000035469	Rcbtb1	5430409I18Rik|AW111883|CLLD7|CLLL7	regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 1	protein-coding	0.020000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-157	chr1	172376343	172376543	+	0.02534	NA	promoter-TSS (NM_026234)	promoter-TSS (NM_026234)	-88	NM_026234	67556	Mm.26612	NM_026234	ENSMUSG00000050229	Pigm	4933437L05Rik|AI644422|AV302080|C920011G20Rik	phosphatidylinositol glycan anchor biosynthesis, class M	protein-coding	0.110000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-578	chr12	76440605	76440805	+	0.02534	NA	Intergenic	L1MC3|LINE|L1	-3792	NR_028520	100041694	Mm.259350	NR_028520	ENSMUSG00000073000	Gm10451	-	predicted gene 10451	ncRNA	0.025000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-2404	chr8	71610969	71611169	+	0.02534	NA	promoter-TSS (NM_001364443)	promoter-TSS (NM_001364443)	45	NM_146211	234407	Mm.240885	NM_146211	ENSMUSG00000034807	Colgalt1	2810024B22Rik|Glt25d1	collagen beta(1-O)galactosyltransferase 1	protein-coding	0.080000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-6	chr1	14225584	14225784	+	0.02534	NA	intron (NM_010164, intron 11 of 17)	intron (NM_010164, intron 11 of 17)	84515	NM_001310459	14048	Mm.250185	NM_010164	ENSMUSG00000025932	Eya1	bor	EYA transcriptional coactivator and phosphatase 1	protein-coding	0.005000	0.442786			
merged_common-430	chr19	31064587	31064787	+	0.02534	NA	intron (NM_001013833, intron 3 of 17)	intron (NM_001013833, intron 3 of 17)	-18154	NM_031249	83410	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0.010000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-1571	chr3	50761731	50761931	+	0.02534	NA	Intergenic	L1MD2|LINE|L1	-318218	NM_011990	26570	Mm.260988	NM_011990	ENSMUSG00000027737	Slc7a11	9930009M05Rik|AI451155|sut|xCT	solute carrier family 7 (cationic amino acid transporter, y+ system), member 11	protein-coding	0.005000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-772	chr14	46822167	46822367	+	0.02534	NA	promoter-TSS (NM_022023)	promoter-TSS (NM_022023)	-25	NM_022023	63985	Mm.87312	NM_022023	ENSMUSG00000062014	Gmfb	3110001H22Rik|3110001O16Rik|AI851627|C79176|D14Ertd630e	glia maturation factor, beta	protein-coding	0.105000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-941	chr15	101977406	101977606	+	0.02534	NA	Intergenic	CpG	-23219	NM_212487	332131	Mm.325105	NM_212487	ENSMUSG00000050463	Krt78	2310030B04Rik|Kb40	keratin 78	protein-coding	0.135000	0.810945			
ePOU_nocontrol_ChIP_peaks_unique-1956	chr5	93100999	93101199	+	0.02534	NA	intron (NM_001009818, intron 1 of 9)	intron (NM_001009818, intron 1 of 9)	7683	NM_001347377	52398	Mm.394184	NM_001009818	ENSMUSG00000058013	Sept11	6230410I01Rik|AW548875|D5Ertd606e	septin 11	protein-coding	0.010000	0.457711			-55(ATCAGAATAAGAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2601	chr9	111271941	111272141	+	0.02534	NA	promoter-TSS (NM_001324522)	promoter-TSS (NM_001324522)	196	NM_175266	77781	Mm.209005	NM_175266	ENSMUSG00000046785	Epm2aip1	A930003G21Rik|mKIAA0766	EPM2A (laforin) interacting protein 1	protein-coding	0.095000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-2366	chr8	39742461	39742661	+	0.02534	NA	Intergenic	Tigger6a|DNA|TcMar-Tigger	-99883	NM_031195	20288	Mm.239291	NM_031195	ENSMUSG00000025044	Msr1	MRS-A|MSR|MSR-A|SR-AI|SR-AII|Scara1|Scvr	macrophage scavenger receptor 1	protein-coding	0.000000	0.383085			
Oct4_nocontrol_ChIP_peaks_unique-370	chr3	158031851	158032051	+	0.02534	NA	promoter-TSS (NM_001093753)	promoter-TSS (NM_001093753)	-179	NM_001356997	69207	Mm.223946	NM_026989	ENSMUSG00000055436	Srsf11	0610009J05Rik|2610019N13Rik|BF642805|Sfrs11	serine/arginine-rich splicing factor 11	protein-coding	0.025000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-454	chr11	96789022	96789222	+	0.02534	NA	promoter-TSS (NM_001362564)	promoter-TSS (NM_001362564)	-13	NM_001362564	12412	Mm.29055	NM_007622	ENSMUSG00000018666	Cbx1	Cbx|Cbx-rs2|E430007M08Rik|HP1B|Hp1beta|M31|MOD1	chromobox 1	protein-coding	0.115000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-1303	chr19	43674829	43675029	+	0.02534	NA	promoter-TSS (NR_045645)	promoter-TSS (NR_045645)	-48	NM_001356944	246696	Mm.23827	NM_145156	ENSMUSG00000040414	Slc25a28	Mfrn2|Mrs3/4	solute carrier family 25, member 28	protein-coding	0.080000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-1306	chr19	44267002	44267202	+	0.02534	NA	Intergenic	CpG	-26574	NM_009128	20250	Mm.487021	NM_009128	ENSMUSG00000025203	Scd2	Mir5114|Scd-2|mir-5114|swty	stearoyl-Coenzyme A desaturase 2	protein-coding	0.090000	0.706468			
merged_common-385	chr17	90631231	90631431	+	0.02534	NA	intron (NM_001346957, intron 7 of 18)	intron (NM_001346957, intron 7 of 18)	162145	NR_136930	102634634		NR_136930		Gm20491	-	enolase 1, alpha non-neuron pseudogene	pseudo	0.015000	0.388060			-47(TCTCTATGATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1804	chr4	99829140	99829340	+	0.02534	NA	promoter-TSS (NM_001362976)	promoter-TSS (NM_001362976)	-82	NM_001362974	67733	Mm.257094	NM_026348	ENSMUSG00000028549	Itgb3bp	4930471O16Rik|AU022583|CENP-R	integrin beta 3 binding protein (beta3-endonexin)	protein-coding	0.070000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-1740	chr4	34687129	34687329	+	0.02534	NA	intron (NM_011895, intron 1 of 7)	CpG	209	NM_011895	24060	Mm.281885	NM_011895	ENSMUSG00000028293	Slc35a1	AA408150|AI314851	solute carrier family 35 (CMP-sialic acid transporter), member 1	protein-coding	0.115000	0.756219			
merged_common-498	chr2	124606179	124606379	+	0.02534	NA	intron (NM_001290997, intron 5 of 20)	intron (NM_001290997, intron 5 of 20)	-4017	NM_001291000	214968	Mm.330536	NM_172537	ENSMUSG00000027200	Sema6d	1110067B02Rik|AA409156|D330011G23|mKIAA1479	sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D	protein-coding	0.010000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-1286	chr19	28378054	28378254	+	0.02534	NA	intron (NM_175459, intron 4 of 10)	intron (NM_175459, intron 4 of 10)	-300070	NR_045330	320176	Mm.406716	NR_045330	ENSMUSG00000097735	D930032P07Rik	-	RIKEN cDNA D930032P07 gene	ncRNA	0.010000	0.452736			
merged_common-15	chr1	56697521	56697721	+	0.02534	NA	Intergenic	CT-rich|Low_complexity|Low_complexity	-60170	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.005000	0.412935			60(ATTTACATGACTGAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1841	chr4	124850558	124850758	+	0.02534	NA	promoter-TSS (NM_001142727)	promoter-TSS (NM_001142727)	72	NM_001142727	68920	Mm.272397	NM_001142727	ENSMUSG00000078570	1110065P20Rik	C530005M16Rik	RIKEN cDNA 1110065P20 gene	protein-coding	0.150000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-219	chr10	30618184	30618384	+	0.02534	NA	promoter-TSS (NM_025798)	promoter-TSS (NM_025798)	82	NM_025798	66847	Mm.46218	NM_025798	ENSMUSG00000019791	Hint3	0610010I17Rik|AV009015|HINT-3|HINT-4|HINT4	histidine triad nucleotide binding protein 3	protein-coding	0.090000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-62	chr1	75879294	75879494	+	0.02534	NA	Intergenic	Intergenic	332932	NM_001357150	20536	Mm.5053	NM_009208	ENSMUSG00000006576	Slc4a3	A930038D23Rik|Ae3	solute carrier family 4 (anion exchanger), member 3	protein-coding	0.000000	0.268657			
Oct4_nocontrol_ChIP_peaks_unique-545	chr9	100446254	100446454	+	0.02534	NA	Intergenic	Intergenic	40119	NM_001033543	213208	Mm.242896	NM_001033543	ENSMUSG00000044244	Il20rb	AV228068|Fndc6|Gm186|Il20R2	interleukin 20 receptor beta	protein-coding	0.060000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-137	chr1	160184063	160184263	+	0.02534	NA	Intergenic	MER45B|DNA|hAT-Tip100	-11052	NM_025474	64659	Mm.29599	NM_025474	ENSMUSG00000058267	Mrps14	1810032L21Rik|AL022847|Rpms14	mitochondrial ribosomal protein S14	protein-coding	0.020000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-1983	chr5	115559295	115559495	+	0.02534	NA	promoter-TSS (NM_007475)	promoter-TSS (NM_007475)	-72	NM_007475	11837	Mm.5286	NM_007475	ENSMUSG00000067274	Rplp0	36B4|Arbp|L10E	ribosomal protein, large, P0	protein-coding	0.075000	0.577114			
merged_common-635	chr5	34187776	34187976	+	0.02534	NA	promoter-TSS (NM_010753)	promoter-TSS (NM_010753)	-166	NM_010753	17122	Mm.259260	NM_010753	ENSMUSG00000037235	Mxd4	2810410A03Rik|Mad4|bHLHc12	Max dimerization protein 4	protein-coding	0.045000	0.577114			
ePOU_nocontrol_ChIP_peaks_unique-864	chr15	41675990	41676190	+	0.02534	NA	intron (NR_152565, intron 3 of 17)	intron (NR_152565, intron 3 of 17)	-112851	NM_001130165	170719	Mm.254267	NM_130885	ENSMUSG00000022307	Oxr1	2210416C20Rik|C7|C7B	oxidation resistance 1	protein-coding	0.005000	0.283582			-93(ATTTGCATAAATACAA,-,0.00),71(AATCTGTTATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-999	chr16	42178696	42178896	+	0.02534	NA	3' UTR (NM_001347236, exon 7 of 7)	3' UTR (NM_001347236, exon 7 of 7)	124673	NR_105858	102466172		NR_105858	ENSMUSG00000098300	Mir6540	Gm27780|mir-6540|mmu-mir-6540	microRNA 6540	ncRNA	0.015000	0.298507			
ePOU_nocontrol_ChIP_peaks_unique-1056	chr17	10496666	10496866	+	0.02534	NA	intron (NM_027032, intron 4 of 4)	intron (NM_027032, intron 4 of 4)	40550	NR_077239	319750	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.010000	0.373134		20(TATGTATATTTATG,-,0.00),30(TATGTATATTTATG,-,0.00),40(TATGTATATTTATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2552	chr9	71493864	71494064	+	0.02534	NA	Intergenic	Intergenic	-7981	NM_178602	28015	Mm.21094	NM_178602	ENSMUSG00000032199	Polr2m	AA407243|AA408799|AI303746|AW553238|D9Wsu138e|Grinl1a|mKIAA4185	polymerase (RNA) II (DNA directed) polypeptide M	protein-coding	0.005000	0.417910			
merged_common-50	chr1	134415643	134415843	+	0.02534	NA	promoter-TSS (NM_001306069)	promoter-TSS (NM_001306069)	79	NM_001306069	72674	Mm.259976	NM_028320	ENSMUSG00000026457	Adipor1	2810031L11Rik|ACDCR1|CGI-45|Paqr1	adiponectin receptor 1	protein-coding	0.150000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-934	chr15	98093384	98093584	+	0.02534	NA	promoter-TSS (NM_144851)	promoter-TSS (NM_144851)	85	NM_144851	223870	Mm.384023	NM_144851	ENSMUSG00000033075	Senp1	2310046A20Rik|D15Ertd528e|E330036L07Rik|suPr-2	SUMO1/sentrin specific peptidase 1	protein-coding	0.100000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-1733	chr4	29091310	29091510	+	0.02534	NA	Intergenic	Intergenic	23331	NR_151693	102634169		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0.005000	0.343284			
merged_common-436	chr19	38488054	38488254	+	0.02534	NA	Intergenic	Intergenic	-36043	NM_019588	74055	Mm.34031	NM_019588	ENSMUSG00000024998	Plce1	4933403A21Rik|PLCepsilon|Plce|mKIAA1516	phospholipase C, epsilon 1	protein-coding	0.020000	0.417910			-96(ATTTGAATAACACCGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2622	chrX	7899187	7899387	+	0.02534	NA	promoter-TSS (NM_001252529)	promoter-TSS (NM_001252529)	-18	NM_001252529	54633	Mm.14616	NM_019478	ENSMUSG00000031157	Pqbp1	PQBP-1|Sfc2|npw38	polyglutamine binding protein 1	protein-coding	0.070000	0.562189			
Oct4_nocontrol_ChIP_peaks_unique-354	chr3	88386510	88386710	+	0.02534	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-2144	NM_007541	12096	Mm.389459	NM_007541	ENSMUSG00000074483	Bglap	BGP|Bglap1|OC|OG1|mOC-A	bone gamma carboxyglutamate protein	protein-coding	0.010000	0.348259			-24(TCATTTTCATTCAAAC,+,0.00)
merged_common-142	chr11	40977290	40977490	+	0.02534	NA	Intergenic	Intergenic	-222104	NM_009831	12450	Mm.2103	NM_009831	ENSMUSG00000020326	Ccng1	AI314029	cyclin G1	protein-coding	0.010000	0.388060			-85(ATACTCTTTTGCATAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-241	chr17	17838184	17838384	+	0.02534	NA	intron (NM_001162909, intron 7 of 8)	CpG	7309	NM_001162909	75202	Mm.227456	NM_029205	ENSMUSG00000080316	Spaca6	4930546H06Rik|9530079D04Rik|B230206P06Rik|Ncrna00085|SPACA6A|let-7e|mir-125a|mir-99b	sperm acrosome associated 6	protein-coding	0.085000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-1651	chr3	102980099	102980299	+	0.02534	NA	Intergenic	Intergenic	-15541	NM_025679	66641	Mm.33937	NM_025679	ENSMUSG00000027854	Sike1	2810005O12Rik|5730470L24Rik|AI450236|AI839862|Sike|Sikeb	suppressor of IKBKE 1	protein-coding	0.005000	0.417910			-21(TTTTATTTATGCTAAT,+,0.00)
merged_common-191	chr12	27504003	27504203	+	0.02534	NA	Intergenic	Intergenic	-161385	NM_009234	20666	Mm.41702	NM_009234	ENSMUSG00000063632	Sox11	1110038H03Rik|6230403H02Rik|AI836553|end1	SRY (sex determining region Y)-box 11	protein-coding	0.000000	0.323383			12(TATTTTTTATGCAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-280	chr10	86021793	86021993	+	0.02534	NA	promoter-TSS (NM_001347151)	promoter-TSS (NM_001347151)	-36	NM_153195	69754	Mm.44236	NM_153195	ENSMUSG00000001786	Fbxo7	2410015K21Rik|A230052G17Rik|AI117679|AW260462|C85118	F-box protein 7	protein-coding	0.145000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-198	chr10	18319079	18319279	+	0.02534	NA	Intergenic	CpG	-84198	NM_001346751	215814	Mm.296565	NM_144820	ENSMUSG00000059554	Ccdc28a	1700009P13Rik|AI480677	coiled-coil domain containing 28A	protein-coding	0.130000	0.721393			
Oct4_nocontrol_ChIP_peaks_unique-137	chr13	24831654	24831854	+	0.02534	NA	promoter-TSS (NM_019551)	promoter-TSS (NM_019551)	95	NM_019551	56196	Mm.427162	NM_019551	ENSMUSG00000035958	Tdp2	D13Ertd656e|Ttrap	tyrosyl-DNA phosphodiesterase 2	protein-coding	0.140000	0.721393			
merged_common-212	chr12	86726426	86726626	+	0.02534	NA	promoter-TSS (NM_144524)	promoter-TSS (NM_144524)	-66	NM_144524	68737	Mm.63979	NM_144524	ENSMUSG00000021257	Angel1	1110030H02Rik|mKIAA0759	angel homolog 1	protein-coding	0.065000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-1910	chr5	32842525	32842725	+	0.02534	NA	intron (NM_194340, intron 3 of 10)	intron (NM_194340, intron 3 of 10)	11605	NM_194340	215476	Mm.248721	NM_194340	ENSMUSG00000054280	Prr14l	6030436E02Rik|C330019G07Rik|Prl14l	proline rich 14-like	protein-coding	0.005000	0.338308			-31(CTCTGAATAACAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1408	chr2	80080388	80080588	+	0.02534	NA	intron (NM_001159582, intron 2 of 15)	intron (NM_001159582, intron 2 of 15)	-41586	NM_001355142	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.020000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-2412	chr8	73142762	73142962	+	0.02534	NA	intron (NM_001317391, intron 3 of 15)	intron (NM_001317391, intron 3 of 15)	126350	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	0.000000	0.447761			37(ATTTGCATATGTAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-505	chr12	4358813	4359013	+	0.02534	NA	intron (NM_010881, intron 2 of 22)	RLTR13D6|LTR|ERVK	118269	NM_010881	17977	Mm.301039	NM_010881	ENSMUSG00000020647	Ncoa1	KAT13A|NCoA-1|NRC-1|SRC-1|SRC-a|SRC1|bHLHe74|mNRC-1	nuclear receptor coactivator 1	protein-coding	0.010000	0.462687			
merged_common-687	chr6	38848658	38848858	+	0.02534	NA	intron (NM_001294144, intron 1 of 14)	MLT1C|LTR|ERVL-MaLR	-11447	NM_001136065	15258	Mm.23790	NM_010433	ENSMUSG00000061436	Hipk2	1110014O20Rik|B230339E18Rik|Stank	homeodomain interacting protein kinase 2	protein-coding	0.000000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-879	chr15	58135094	58135294	+	0.02534	NA	promoter-TSS (NM_027435)	promoter-TSS (NM_027435)	-112	NM_027435	70472	Mm.221758	NM_027435	ENSMUSG00000022360	Atad2	2610509G12Rik	ATPase family, AAA domain containing 2	protein-coding	0.150000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-658	chr13	41412714	41412914	+	0.02534	NA	intron (NM_001111324, intron 2 of 7)	L1ME2|LINE|L1	-53813	NM_017464	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.005000	0.323383			
ePOU_nocontrol_ChIP_peaks_unique-1826	chr4	116669607	116669807	+	0.02534	NA	Intergenic	B1_Mus2|SINE|Alu	-15892	NM_011034	18477	Mm.30929	NM_011034	ENSMUSG00000028691	Prdx1	MSP23|NkefA|OSF-3|OSF3|PAG|Paga|PrdxI|PrxI|TDX2|TPxA|Tdpx2|prx1	peroxiredoxin 1	protein-coding	0.010000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-1687	chr3	127837218	127837418	+	0.02534	NA	5' UTR (NM_145964, exon 1 of 10)	5' UTR (NM_145964, exon 1 of 10)	205	NM_145964	211556	Mm.403486	NM_145964	ENSMUSG00000074238	Ap1ar	AA407621|C78909|Gadkin	adaptor-related protein complex 1 associated regulatory protein	protein-coding	0.160000	0.781095			
ePOU_nocontrol_ChIP_peaks_unique-2105	chr6	72883274	72883474	+	0.02534	NA	intron (NM_019715, intron 1 of 6)	MER58B|DNA|hAT-Charlie	15918	NM_001347231	74287	Mm.29194	NM_019715	ENSMUSG00000055239	Kcmf1	1700094M07Rik|Debt91|Pmcf	potassium channel modulatory factor 1	protein-coding	0.015000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-1979	chr5	113908674	113908874	+	0.02534	NA	promoter-TSS (NM_011779)	promoter-TSS (NM_011779)	-68	NM_011779	23790	Mm.260158	NM_011779	ENSMUSG00000004530	Coro1c	AL022675|AW455561|AW548837|CRN2	coronin, actin binding protein 1C	protein-coding	0.160000	0.796020			
ePOU_nocontrol_ChIP_peaks_unique-433	chr11	77793254	77793454	+	0.02534	NA	intron (NM_011586, intron 1 of 39)	intron (NM_011586, intron 1 of 39)	-7944	NM_001291214	360013	Mm.341248	NM_011586	ENSMUSG00000000631	Myo18a	MAJN|MyoPDZ|MysPDZ|SP-R210	myosin XVIIIA	protein-coding	0.045000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-1264	chr19	10182659	10182859	+	0.02534	NA	promoter-TSS (NM_146094)	promoter-TSS (NM_146094)	-129	NM_146094	76267	Mm.30158	NM_146094	ENSMUSG00000010663	Fads1	0710001O03Rik|A930006B21Rik|AI317215|DSD	fatty acid desaturase 1	protein-coding	0.070000	0.557214			
ePOU_nocontrol_ChIP_peaks_unique-1245	chr18	83807684	83807884	+	0.02534	NA	Intergenic	Intergenic	278681	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|teashirt1	teashirt zinc finger family member 1	protein-coding	0.010000	0.318408			-68(CTATTATCATTTAAAA,+,0.00)
merged_common-286	chr15	11399709	11399909	+	0.02534	NA	promoter-TSS (NM_033074)	promoter-TSS (NM_033074)	-151	NM_033074	110960	Mm.286061	NM_033074	ENSMUSG00000022241	Tars	D15Wsu59e|ThrRS	threonyl-tRNA synthetase	protein-coding	0.055000	0.552239			
ePOU_nocontrol_ChIP_peaks_unique-555	chr12	59131209	59131409	+	0.02534	NA	promoter-TSS (NM_001165253)	promoter-TSS (NM_001165253)	-172	NM_001165253	338320	Mm.213215	NM_146034	ENSMUSG00000021000	Mia2	Ctage5|D12Bwg0579e|Mea6|Mgea|Mgea6	MIA SH3 domain ER export factor 2	protein-coding	0.130000	0.731343			
merged_common-283	chr15	5116538	5116738	+	0.02534	NA	promoter-TSS (NM_026069)	promoter-TSS (NM_026069)	25	NM_026069	67281	Mm.10474	NM_026069	ENSMUSG00000041841	Rpl37	3110005M08Rik	ribosomal protein L37	protein-coding	0.055000	0.587065			
ePOU_nocontrol_ChIP_peaks_unique-614	chr12	109399522	109399722	+	0.02534	NA	Intergenic	Intergenic	-53201	NR_033813	13386	Mm.157069	NM_010052	ENSMUSG00000040856	Dlk1	AW742678|DLK-1|DlkI|FA1|Ly107|Peg9|SCP1|ZOG|pG2|pref-1	delta like non-canonical Notch ligand 1	protein-coding	0.035000	0.482587	7(GATGAATTATTCACA,+,0.00),7(GATGAATTATTCACA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2159	chr6	128355615	128355815	+	0.02534	NA	intron (NM_011657, intron 1 of 10)	CpG	136	NM_011657	22158	Mm.291783	NM_011657	ENSMUSG00000001521	Tulp3	2310022L06Rik|AI316887	tubby-like protein 3	protein-coding	0.125000	0.746269			
ePOU_nocontrol_ChIP_peaks_unique-1715	chr3	157947051	157947251	+	0.02534	NA	5' UTR (NM_001359909, exon 1 of 12)	5' UTR (NM_001359909, exon 1 of 12)	151	NM_001359909	433667	Mm.265806	NM_001013806	ENSMUSG00000039988	Ankrd13c	AI505652|AU022220	ankyrin repeat domain 13c	protein-coding	0.090000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-64	chr1	80024899	80025099	+	0.02534	NA	Intergenic	Intergenic	-166334	NM_009255	20720	Mm.3093	NM_009255	ENSMUSG00000026249	Serpine2	B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4	serine (or cysteine) peptidase inhibitor, clade E, member 2	protein-coding	0.005000	0.412935			-36(TATTTGCCATTCAAAA,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-75	chr11	21826904	21827104	+	0.02534	NA	intron (NM_001364768, intron 13 of 16)	intron (NM_001364768, intron 13 of 16)	174647	NM_011023	18423	Mm.129663	NM_011023	ENSMUSG00000005917	Otx1	A730044F23Rik|jv	orthodenticle homeobox 1	protein-coding	0.005000	0.343284			
merged_common-169	chr11	100414546	100414746	+	0.02534	NA	exon (NM_176830, exon 1 of 8)	exon (NM_176830, exon 1 of 8)	173	NM_176830	66180	Mm.4940	NM_176830	ENSMUSG00000006931	P3h4	1110036O03Rik|AI413214|Leprel4|Sc65	prolyl 3-hydroxylase family member 4 (non-enzymatic)	protein-coding	0.090000	0.731343			
ePOU_nocontrol_ChIP_peaks_unique-1679	chr3	123379567	123379767	+	0.02534	NA	intron (NM_201638, intron 5 of 10)	L1MB8|LINE|L1	6323	NM_201638	210529	Mm.260039	NM_201638	ENSMUSG00000028114	Mettl14	G430022H21Rik|mKIAA1627	methyltransferase like 14	protein-coding	0.000000	0.318408			
Oct4_nocontrol_ChIP_peaks_unique-70	chr10	119925981	119926181	+	0.02534	NA	intron (NM_001358810, intron 2 of 25)	intron (NM_001358810, intron 2 of 25)	-66841	NR_102387	74053	Mm.196692	NM_028736	ENSMUSG00000034813	Grip1	4931400F03Rik|GRIP|eb	glutamate receptor interacting protein 1	protein-coding	0.015000	0.422886			21(GCATTGTTATGCAAAC,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1198	chr18	45008851	45009051	+	0.02534	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	180286	NM_001163013	240255	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178|mYTHDC2	YTH domain containing 2	protein-coding	0.010000	0.308458		74(ATTGCATATTCAGG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-570	chr12	72569088	72569288	+	0.02534	NA	intron (NM_026327, intron 7 of 10)	intron (NM_026327, intron 7 of 10)	32831	NM_026327	67708	Mm.11233	NM_026327	ENSMUSG00000034501	Pcnx4	1810048J11Rik|4932413O10|AU017192|Pcnxl4	pecanex homolog 4	protein-coding	0.000000	0.378109			
Oct4_nocontrol_ChIP_peaks_unique-494	chr7	142405097	142405297	+	0.02534	NA	Intergenic	Intergenic	-17370	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.000000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-1793	chr4	87854949	87855149	+	0.02534	NA	intron (NM_027326, intron 4 of 10)	intron (NM_027326, intron 4 of 10)	-48726	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.005000	0.353234			-34(ATTTGCATAACATTCT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-873	chr15	51534891	51535091	+	0.02534	NA	Intergenic	Charlie15b|DNA|hAT-Charlie	-139381	NR_045092	100502643	Mm.131987	NR_045092	ENSMUSG00000115654	Gm19303	-	predicted gene, 19303	ncRNA	0.020000	0.348259			
merged_common-535	chr3	57651544	57651744	+	0.02534	NA	promoter-TSS (NM_175095)	promoter-TSS (NM_175095)	40	NM_175095	52245	Mm.21901	NM_175095	ENSMUSG00000036513	Commd2	1190017G07Rik|AI047739|D3Ertd176e|HSPC042	COMM domain containing 2	protein-coding	0.075000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-281	chr10	87846294	87846494	+	0.02534	NA	Intergenic	Intergenic	-11871	NM_001314010	16000	Mm.268521	NM_010512	ENSMUSG00000020053	Igf1	C730016P09Rik|Igf-1|Igf-I	insulin-like growth factor 1	protein-coding	0.010000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-1855	chr4	136053414	136053614	+	0.02534	NA	promoter-TSS (NM_025919)	promoter-TSS (NM_025919)	-121	NM_025919	67025	Mm.276856	NM_025919	ENSMUSG00000059291	Rpl11	2010203J19Rik	ribosomal protein L11	protein-coding	0.030000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-2425	chr8	84067162	84067362	+	0.02534	NA	intron (NM_009055, intron 1 of 20)	CpG	426	NM_009055	19724	Mm.7892	NM_009055	ENSMUSG00000031706	Rfx1	AI047719|AI385641	regulatory factor X, 1 (influences HLA class II expression)	protein-coding	0.130000	0.786070			
ePOU_nocontrol_ChIP_peaks_unique-26	chr1	51371153	51371353	+	0.02534	NA	Intergenic	Intergenic	-37474	NR_045151	442821	Mm.118030	NR_045151	ENSMUSG00000101799	9330175M20Rik	-	RIKEN cDNA 9330175M20 gene	ncRNA	0.010000	0.338308			19(TCATTGTCATTTTAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1920	chr5	36581931	36582131	+	0.02534	NA	intron (NM_001113362, intron 2 of 14)	CpG	366	NM_133910	100855	Mm.486203	NM_133910	ENSMUSG00000029192	Tbc1d14	2810413P16Rik|AU043625|C86258|D5Ertd110e|mKIAA1322	TBC1 domain family, member 14	protein-coding	0.105000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-2226	chr7	66164967	66165167	+	0.02534	NA	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	55575	NM_001081163	269941	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	-	chondroitin sulfate synthase 1	protein-coding	0.010000	0.333333			13(TAATTCTCATGAAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-648	chr13	32400491	32400691	+	0.02534	NA	Intergenic	L1MB4|LINE|L1	-62047	NM_146041	218138	Mm.247143	NM_146041	ENSMUSG00000038372	Gmds	BC031788|C87208	GDP-mannose 4, 6-dehydratase	protein-coding	0.015000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-699	chr13	91460788	91460988	+	0.02534	NA	promoter-TSS (NM_024186)	promoter-TSS (NM_024186)	-209	NM_001360775	66970	Mm.343095	NM_024186	ENSMUSG00000003992	Ssbp2	1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2	single-stranded DNA binding protein 2	protein-coding	0.075000	0.686567			
ePOU_nocontrol_ChIP_peaks_unique-798	chr14	71262061	71262261	+	0.02534	NA	intron (NR_046075, intron 2 of 2)	intron (NR_046075, intron 2 of 2)	10888	NR_046076	100043132	Mm.399336	NR_046075	ENSMUSG00000115139	Gm4251	-	predicted gene 4251	ncRNA	0.000000	0.293532	-40(TATGCAATATTCATG,+,0.00),-40(TATGCAATATTCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-289	chr10	94445186	94445386	+	0.02534	NA	intron (NM_001359762, intron 2 of 4)	intron (NM_001359762, intron 2 of 4)	-69571	NM_172051	319880	Mm.23047	NM_172051	ENSMUSG00000020023	Tmcc3	A230066D03Rik|AW488095|C630016B22Rik|C88213|Gm1556|Tmcc1	transmembrane and coiled coil domains 3	protein-coding	0.015000	0.452736			79(ATTTACTAGAGAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1801	chr4	95347582	95347782	+	0.02534	NA	Intergenic	PB1|SINE|Alu	-209825	NM_001113412	75578	Mm.276098	NM_029347	ENSMUSG00000028573	Fggy	2310009E04Rik	FGGY carbohydrate kinase domain containing	protein-coding	0.005000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-1144	chr17	80581534	80581734	+	0.02534	NA	3' UTR (NM_001360278, exon 34 of 34)	3' UTR (NM_001360278, exon 34 of 34)	-3821	NM_001360144	381113	Mm.329216	NM_001033443	ENSMUSG00000033966	Cdkl4	AU067824|Gm942	cyclin-dependent kinase-like 4	protein-coding	0.000000	0.298507			-2(GATTACATAACAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1422	chr2	94145842	94146042	+	0.02534	NA	intron (NM_019657, intron 1 of 10)	intron (NM_019657, intron 1 of 10)	11967	NM_019657	56348	Mm.22505	NM_019657	ENSMUSG00000027195	Hsd17b12	2610510O05Rik|AI172963|KIK-I|Kik1	hydroxysteroid (17-beta) dehydrogenase 12	protein-coding	0.010000	0.318408			-67(ATATGCAAGTCAAACA,-,0.00),-6(ATCACCATGACAATTT,-,0.00),51(ATTTAATTAACAAAAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1626	chr3	87987019	87987219	+	0.02534	NA	TTS (NM_007529)	TTS (NM_007529)	13237	NM_001109758	12032	Mm.4598	NM_007529	ENSMUSG00000004892	Bcan	Cspg7	brevican	protein-coding	0.050000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-1421	chr2	93944520	93944720	+	0.02534	NA	Intergenic	Intergenic	12480	NM_001145034	620695	Mm.482106	NM_001145034	ENSMUSG00000087006	Gm13889	Ag2	predicted gene 13889	protein-coding	0.005000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-2635	chrX	85017535	85017735	+	0.02534	NA	intron (NM_007868, intron 62 of 78)	intron (NM_007868, intron 62 of 78)	-30660	NM_001314037	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.000000	0.402985			50(TTTTTGTAATTGTAAT,+,0.00)
merged_common-392	chr18	18624891	18625091	+	0.02534	NA	Intergenic	Intergenic	-1044001	NR_045374	75162	Mm.60874	NR_045374	ENSMUSG00000117615	4930545E07Rik	-	RIKEN cDNA 4930545E07 gene	ncRNA	0.005000	0.303483			0(ATAAGAAAAATAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1680	chr3	124445675	124445875	+	0.02534	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-19736	NM_001357195	71824	Mm.331353	NM_027939	ENSMUSG00000027973	1700006A11Rik	-	RIKEN cDNA 1700006A11 gene	protein-coding	0.010000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-2227	chr7	66689854	66690054	+	0.02534	NA	promoter-TSS (NR_034030)	promoter-TSS (NR_034030)	65	NM_001191001	72635	Mm.289796	NM_152815	ENSMUSG00000053091	Lins1	2700083B01Rik|AW547219|Lins|Lins2|Wins2	lines homolog 1	protein-coding	0.060000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-2535	chr9	61914720	61914920	+	0.02534	NA	promoter-TSS (NM_018853)	promoter-TSS (NM_018853)	-310	NM_018853	56040	Mm.3158	NM_018853	ENSMUSG00000007892	Rplp1	2410042H16Rik|Arpp1|C430017H15Rik	ribosomal protein, large, P1	protein-coding	0.070000	0.562189			
merged_common-403	chr18	43176003	43176203	+	0.02534	NA	Intergenic	Intergenic	-31594	NM_178749	269019	Mm.150401	NM_178749	ENSMUSG00000039954	Stk32a	A930015B13Rik|YANK1	serine/threonine kinase 32A	protein-coding	0.015000	0.348259			68(ATATACATGAGAATCC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-956	chr16	14361466	14361666	+	0.02534	NA	promoter-TSS (NM_008576)	promoter-TSS (NM_008576)	8	NM_008576	17250	Mm.196634	NM_008576	ENSMUSG00000023088	Abcc1	Abcc1a|Abcc1b|MRP|Mdrap|Mrp1	ATP-binding cassette, sub-family C (CFTR/MRP), member 1	protein-coding	0.135000	0.771144			
ePOU_nocontrol_ChIP_peaks_unique-714	chr13	98546237	98546437	+	0.02534	NA	Intergenic	Intergenic	91073	NM_026685	68344	Mm.28766	NM_026685	ENSMUSG00000046082	Tmem174	0610009B10Rik|AA986094	transmembrane protein 174	protein-coding	0.020000	0.492537			
Oct4_nocontrol_ChIP_peaks_unique-417	chr5	57841746	57841946	+	0.02534	NA	intron (NM_001310608, intron 1 of 3)	intron (NM_001310608, intron 1 of 3)	123765	NM_001310608	54216	Mm.332387	NM_018764	ENSMUSG00000029108	Pcdh7	-	protocadherin 7	protein-coding	0.000000	0.417910			37(AAATGCATCACAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1729	chr4	21723146	21723346	+	0.02534	NA	Intergenic	Intergenic	-4455	NM_001290420	51813	Mm.278584	NM_016746	ENSMUSG00000028252	Ccnc	AI451004|AU020987|CG1C	cyclin C	protein-coding	0.005000	0.447761			-91(ATTAGCATCAAAATAC,-,0.00)
merged_common-177	chr11	108920721	108920921	+	0.02534	NA	intron (NM_015732, intron 1 of 10)	CpG	472	NM_015732	12006	Mm.71710	NM_015732	ENSMUSG00000000142	Axin2	Axi1|Axil|Conductin	axin 2	protein-coding	0.100000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-168	chr1	180641175	180641375	+	0.02534	NA	non-coding (NR_120498, exon 1 of 15)	non-coding (NR_120498, exon 1 of 15)	125	NM_001103182	72568	Mm.275044	NM_175186	ENSMUSG00000058729	Lin9	2700022J23Rik|Bara|Lin-9|TGS|TGS1|mLin-9	lin-9 homolog (C. elegans)	protein-coding	0.140000	0.761194			
Oct4_nocontrol_ChIP_peaks_unique-499	chr8	26043797	26043997	+	0.02534	NA	intron (NM_207659, intron 17 of 21)	intron (NM_207659, intron 17 of 21)	-28287	NM_008033	14272	Mm.3496	NM_008033	ENSMUSG00000015994	Fnta	FTA	farnesyltransferase, CAAX box, alpha	protein-coding	0.000000	0.398010		-16(TATGAATATTCATA,+,0.00),-16(TATGAATATTCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2145	chr6	116126195	116126395	+	0.02534	NA	intron (NM_177412, intron 3 of 5)	intron (NM_177412, intron 3 of 5)	67079	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.005000	0.323383			
merged_common-227	chr13	35853071	35853271	+	0.02534	NA	intron (NM_001123386, intron 2 of 6)	intron (NM_001123386, intron 2 of 6)	53176	NM_145938	208366	Mm.35545	NM_145938	ENSMUSG00000021418	Rpp40	D8Bwg1265e|Rnasep1	ribonuclease P 40 subunit	protein-coding	0.000000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-2548	chr9	68211054	68211254	+	0.02534	NA	Intergenic	L1MEd|LINE|L1	-185440	NR_045745	434412	Mm.490707	NR_045745	ENSMUSG00000111841	Gm20745	-	predicted gene, 20745	ncRNA	0.005000	0.427861	-18(TTTGCATAATGCAAG,+,0.00),-18(TTTGCATAATGCAAG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1710	chr3	155499315	155499515	+	0.02534	NA	Intergenic	Intergenic	405981	NM_028938	74435	Mm.195711	NM_028938	ENSMUSG00000028182	Lrriq3	4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44	leucine-rich repeats and IQ motif containing 3	protein-coding	0.005000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-1003	chr16	43592913	43593113	+	0.02534	NA	intron (NM_181058, intron 5 of 6)	intron (NM_181058, intron 5 of 6)	-47642	NR_030576	100124467		NR_030576	ENSMUSG00000076372	Mir568	Mirn568|mmu-mir-568	microRNA 568	ncRNA	0.005000	0.398010			-23(TATTTACTTTGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1627	chr3	88553324	88553524	+	0.02534	NA	promoter-TSS (NM_033526)	promoter-TSS (NM_033526)	-292	NM_033526	94232	Mm.303059	NM_033526	ENSMUSG00000008604	Ubqln4	A1Up|A1u|AI663987|CIP75|UBIN	ubiquilin 4	protein-coding	0.070000	0.577114			
ePOU_nocontrol_ChIP_peaks_unique-1623	chr3	87906163	87906363	+	0.02534	NA	promoter-TSS (NM_001331052)	promoter-TSS (NM_001331052)	-58	NM_008231	15191	Mm.292208	NM_008231	ENSMUSG00000004897	Hdgf	AI118077|D3Ertd299e	heparin binding growth factor	protein-coding	0.130000	0.746269			
ePOU_nocontrol_ChIP_peaks_unique-2471	chr8	125255064	125255264	+	0.02534	NA	intron (NM_174853, intron 11 of 11)	intron (NM_174853, intron 11 of 11)	200969	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0.015000	0.497512			
merged_common-569	chr3	158396120	158396320	+	0.02534	NA	intron (NM_001370781, intron 2 of 26)	intron (NM_001370781, intron 2 of 26)	165541	NM_001291453	242274	Mm.132162	NM_001081358	ENSMUSG00000028176	Lrrc7	AK122498|densin|mKIAA1365	leucine rich repeat containing 7	protein-coding	0.005000	0.378109			-39(TTTTAAAACACAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1652	chr3	104638579	104638779	+	0.02534	NA	promoter-TSS (NM_009196)	promoter-TSS (NM_009196)	15	NM_009196	20501	Mm.9086	NM_009196	ENSMUSG00000032902	Slc16a1	AL022710|Mct1	solute carrier family 16 (monocarboxylic acid transporters), member 1	protein-coding	0.120000	0.746269			
ePOU_nocontrol_ChIP_peaks_unique-2279	chr7	112502601	112502801	+	0.02534	NA	intron (NM_020606, intron 1 of 12)	(TC)n|Simple_repeat|Simple_repeat	32982	NR_154467	102636183	Mm.446701	NR_154466		Parvaos	A230071N21Rik	parvin, alpha, opposite strand	ncRNA	0.010000	0.442786			67(CTTTTAAAGAGAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-44	chr1	60180380	60180580	+	0.02534	NA	promoter-TSS (NM_173444)	promoter-TSS (NM_173444)	-119	NM_173444	269198	Mm.205224	NM_173444	ENSMUSG00000073664	Nbeal1	2310076G13Rik|A530050O19Rik|A530083I02Rik|AI662228|ALS2CR17	neurobeachin like 1	protein-coding	0.100000	0.736318			
Oct4_nocontrol_ChIP_peaks_unique-532	chr9	58901046	58901246	+	0.02534	NA	intron (NM_001042752, intron 20 of 27)	intron (NM_001042752, intron 20 of 27)	78197	NM_001081192	330953	Mm.151967	NM_001081192	ENSMUSG00000032338	Hcn4	Bcng3|Hcn3	hyperpolarization-activated, cyclic nucleotide-gated K+ 4	protein-coding	0.020000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-715	chr13	99344703	99344903	+	0.02534	NA	promoter-TSS (NM_173757)	promoter-TSS (NM_173757)	17	NM_173757	218506	Mm.30208	NM_173757	ENSMUSG00000041632	Mrps27	2610028H14Rik	mitochondrial ribosomal protein S27	protein-coding	0.075000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-771	chr14	45734949	45735149	+	0.02534	NA	Intergenic	RLTR25A|LTR|ERVK	-76906	NM_001042719	114874	Mm.121918	NM_176845	ENSMUSG00000037697	Ddhd1	Mir5131|PA-PLA1	DDHD domain containing 1	protein-coding	0.000000	0.388060			-66(GCTTTCTTTTGCTATT,+,0.00),1(ATTTACATATCAATTC,-,0.00),75(CTTTGCAAAAGAATTC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-346	chr11	6778738	6778938	+	0.02534	NA	Intergenic	Intergenic	-58801	NR_046025	626419	Mm.390334	NR_046025	ENSMUSG00000086808	Gm11981	-	predicted gene 11981	ncRNA	0.020000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-664	chr13	47043444	47043644	+	0.02534	NA	promoter-TSS (NM_016785)	promoter-TSS (NM_016785)	45	NM_172262	218214	Mm.31259	NM_172262	ENSMUSG00000038080	Kdm1b	4632428N09Rik|AI482520|Aof1	lysine (K)-specific demethylase 1B	protein-coding	0.105000	0.731343			
Oct4_nocontrol_ChIP_peaks_unique-323	chr2	129800459	129800659	+	0.02534	NA	promoter-TSS (NM_001038635)	promoter-TSS (NM_001038635)	42	NM_001038635	67333	Mm.389329	NM_183262	ENSMUSG00000037885	Stk35	1700054C12Rik|CLIK1|Stk35l1	serine/threonine kinase 35	protein-coding	0.090000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1248	chr18	84951543	84951743	+	0.02534	NA	promoter-TSS (NM_001367965)	promoter-TSS (NM_001367965)	-119	NM_025969	67105	Mm.250617	NM_025969	ENSMUSG00000024645	Timm21	1700034H14Rik|2700002I20Rik	translocase of inner mitochondrial membrane 21	protein-coding	0.055000	0.527363			
merged_common-716	chr6	116397747	116397947	+	0.02534	NA	intron (NM_027920, intron 3 of 6)	intron (NM_027920, intron 3 of 6)	59825	NM_001302385	71779	Mm.27064	NM_027920	ENSMUSG00000025702	March8	1300017E09Rik|MARCH-VIII|Mir	membrane-associated ring finger (C3HC4) 8	protein-coding	0.015000	0.437811			-57(CCTTTGTAATGCAAAT,+,0.00)
merged_common-496	chr2	119463987	119464187	+	0.02534	NA	intron (NM_026574, intron 1 of 35)	RLTR11B|LTR|ERVK	13600	NM_026574	68142	Mm.330496	NM_026574	ENSMUSG00000034154	Ino80	2310079N15Rik|4632409L19Rik|Inoc1	INO80 complex subunit	protein-coding	0.015000	0.432836			-15(CCTTTGTTGTGCAAAC,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-820	chr14	103346798	103346998	+	0.02534	NA	promoter-TSS (NM_207215)	promoter-TSS (NM_207215)	-98	NM_207215	105689	Mm.6478	NM_207215	ENSMUSG00000033004	Mycbp2	AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243	MYC binding protein 2, E3 ubiquitin protein ligase	protein-coding	0.095000	0.676617			
merged_common-754	chr7	108934141	108934341	+	0.02534	NA	promoter-TSS (NM_025344)	promoter-TSS (NM_025344)	-174	NM_025344	66085	Mm.182962	NM_025344	ENSMUSG00000031029	Eif3f	0610037M02Rik|AA409853|Eif3s5	eukaryotic translation initiation factor 3, subunit F	protein-coding	0.035000	0.482587			
Oct4_nocontrol_ChIP_peaks_unique-211	chr15	65787102	65787302	+	0.02534	NA	5' UTR (NM_133766, exon 1 of 23)	5' UTR (NM_133766, exon 1 of 23)	182	NM_133766	76740	Mm.260647	NM_133766	ENSMUSG00000015002	Efr3a	A130089M23Rik|BB071175|C76891|C920006C10Rik|D030063F01Rik|mKIAA0143	EFR3 homolog A	protein-coding	0.165000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-97	chr1	119504798	119504998	+	0.02534	NA	promoter-TSS (NM_022327)	promoter-TSS (NM_022327)	-116	NM_022327	64143	Mm.27832	NM_022327	ENSMUSG00000004451	Ralb	5730472O18Rik	v-ral simian leukemia viral oncogene B	protein-coding	0.075000	0.631841			
merged_common-116	chr10	95035461	95035661	+	0.02534	NA	Intergenic	L1MB7|LINE|L1	-90716	NM_018797	54712	Mm.256712	NM_018797	ENSMUSG00000074785	Plxnc1	2510048K12Rik|AW742158|CD232|Vespr	plexin C1	protein-coding	0.015000	0.422886		-30(CATGAATATTCATA,+,0.00),-30(CATGAATATTCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1250	chr18	90511337	90511537	+	0.02534	NA	intron (NM_198295, intron 2 of 15)	intron (NM_198295, intron 2 of 15)	1283	NM_198295	67988	Mm.268041	NM_198295	ENSMUSG00000024614	Tmx3	6430411B10Rik|A730024F05Rik|AV259382|Txndc10|mKIAA1830	thioredoxin-related transmembrane protein 3	protein-coding	0.000000	0.333333			61(CCATTTACATGCAAAA,+,0.00),63(ATTTACATGCAAAATG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-182	chr14	73326007	73326207	+	0.02534	NA	promoter-TSS (NM_009029)	promoter-TSS (NM_009029)	-285	NM_009029	19645	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	0.115000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-2461	chr8	119558499	119558699	+	0.02534	NA	intron (NM_019709, intron 1 of 23)	CpG	162	NM_019709	56453	Mm.206934	NM_019709	ENSMUSG00000031835	Mbtps1	0610038M03Rik|AV003995|S1P|SKI-1|Ski1|mKIAA0091	membrane-bound transcription factor peptidase, site 1	protein-coding	0.165000	0.791045			
ePOU_nocontrol_ChIP_peaks_unique-2213	chr7	44986616	44986816	+	0.02534	NA	promoter-TSS (NM_001252477)	promoter-TSS (NM_001252477)	-184	NR_045266	100502630	Mm.490013	NR_045266	ENSMUSG00000087138	Gm15545	-	predicted gene 15545	ncRNA	0.070000	0.567164			
ePOU_nocontrol_ChIP_peaks_unique-1290	chr19	29647692	29647892	+	0.02534	NA	intron (NM_001081213, intron 1 of 14)	intron (NM_001081213, intron 1 of 14)	623	NM_001362131	226090	Mm.267131	NM_001081213	ENSMUSG00000046324	Ermp1	D19Ertd410e|D19Wsu12e|Fxna|b2b2633Clo|mKIAA1815	endoplasmic reticulum metallopeptidase 1	protein-coding	0.060000	0.567164			
merged_common-251	chr13	114534756	114534956	+	0.02534	NA	Intergenic	Lx9|LINE|L1	72228	NR_152116	74909	Mm.390651	NR_152116	ENSMUSG00000114879	4930467J12Rik	-	RIKEN cDNA 4930467J12 gene	ncRNA	0.010000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-2410	chr8	72990407	72990607	+	0.02534	NA	intron (NM_001317391, intron 7 of 15)	ORR1C1|LTR|ERVL-MaLR	-26005	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	0.005000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-2050	chr6	29985162	29985362	+	0.02534	NA	promoter-TSS (NR_040263)	promoter-TSS (NR_040263)	-67	NR_040263	76419	Mm.84522	NR_040263	ENSMUSG00000045709	Smkr-ps	1700023L04Rik	smal lysine rich protein 1, pseudogene	ncRNA	0.085000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-1350	chr2	25500887	25501087	+	0.02534	NA	promoter-TSS (NM_027062)	promoter-TSS (NM_027062)	237	NM_013908	30839	Mm.29170	NM_013908	ENSMUSG00000015095	Fbxw5	AI159739|Fbw5	F-box and WD-40 domain protein 5	protein-coding	0.050000	0.616915			
Oct4_nocontrol_ChIP_peaks_unique-471	chr7	64374046	64374246	+	0.02534	NA	promoter-TSS (NM_177893)	promoter-TSS (NM_177893)	-90	NM_177893	330554	Mm.236510	NM_177893	ENSMUSG00000033458	Fan1	6030441H18Rik|Mtmr15|mFAN1	FANCD2/FANCI-associated nuclease 1	protein-coding	0.055000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-1684	chr3	127512314	127512514	+	0.02534	NA	Intergenic	Intergenic	-13299	NM_001327938	109676	Mm.220242	NM_178655	ENSMUSG00000032826	Ank2	100043364|AI835472|AW491075|Ank-2|Gm4392	ankyrin 2, brain	protein-coding	0.010000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-2063	chr6	39296112	39296312	+	0.02534	NA	Intergenic	Intergenic	81223	NR_155076	72144	Mm.482167	NM_028123	ENSMUSG00000029924	Slc37a3	2610507O21Rik|AU044904	solute carrier family 37 (glycerol-3-phosphate transporter), member 3	protein-coding	0.035000	0.462687			-81(AATTGCATCACAATGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2375	chr8	45222162	45222362	+	0.02534	NA	Intergenic	Intergenic	39769	NM_028066	109821	Mm.33326	NM_028066	ENSMUSG00000031645	F11	1600027G01Rik|AI503996|Cf11|FXI|PTA	coagulation factor XI	protein-coding	0.010000	0.368159	6(TATACATTATGCATA,+,0.00),6(TATACATTATGCATA,-,0.00)	13(TATGCATATGCATG,+,0.00),13(TATGCATATGCATG,-,0.00)	18(ATATGCATGAAAGATT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-680	chr13	64432604	64432804	+	0.02534	NA	intron (NM_053180, intron 1 of 7)	CpG	151	NM_053180	105278	Mm.74982	NM_053180	ENSMUSG00000021483	Cdk20	4932702G04Rik|AU019450|AW558027|CDCH|Ccrk|PNQLARE|p42	cyclin-dependent kinase 20	protein-coding	0.095000	0.626866			
merged_common-444	chr19	55543584	55543784	+	0.02534	NA	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	158520	NR_045318	77594	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.010000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-1618	chr3	85072410	85072610	+	0.02534	NA	Intergenic	Intergenic	120299	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.005000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-25	chr1	51206792	51206992	+	0.02534	NA	Intergenic	L1M2|LINE|L1	-82234	NM_138741	20324	Mm.398690	NM_138741	ENSMUSG00000045954	Cavin2	Sdpr	caveolae associated 2	protein-coding	0.010000	0.293532			
merged_common-239	chr13	77479086	77479286	+	0.02534	NA	intron (NM_001145676, intron 19 of 19)	intron (NM_001145676, intron 19 of 19)	-229504	NM_138312	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding	0.010000	0.338308			-63(ACATTGTTTTGTTAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-291	chr2	5845070	5845270	+	0.02534	NA	promoter-TSS (NM_001356504)	promoter-TSS (NM_001356504)	7	NM_001356504	98828	Mm.181490	NM_133837	ENSMUSG00000039128	Cdc123	AA959893|G431001I09Rik	cell division cycle 123	protein-coding	0.060000	0.537313			
Oct4_nocontrol_ChIP_peaks_unique-286	chr19	51833920	51834120	+	0.02534	NA	Intergenic	Intergenic	-430277	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0.000000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-2429	chr8	86692525	86692725	+	0.02534	NA	intron (NM_001168591, intron 5 of 8)	L1MA4|LINE|L1	41056	NM_001168591	66887	Mm.324550	NM_025827	ENSMUSG00000047866	Lonp2	1300002A08Rik|AU015403|Lonp	lon peptidase 2, peroxisomal	protein-coding	0.000000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-2289	chr7	116334111	116334311	+	0.02534	NA	promoter-TSS (NM_026533)	promoter-TSS (NM_026533)	-21	NM_026533	68052	Mm.14798	NM_026533	ENSMUSG00000090862	Rps13	2700063M04Rik	ribosomal protein S13	protein-coding	0.095000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-2567	chr9	86464795	86464995	+	0.02534	NA	promoter-TSS (NM_027394)	promoter-TSS (NM_027394)	21	NM_027394	70348	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	0.115000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-523	chr12	34146891	34147091	+	0.02534	NA	intron (NM_001271386, intron 24 of 27)	intron (NM_001271386, intron 24 of 27)	189320	NM_011658	22160	Mm.3280	NM_011658	ENSMUSG00000035799	Twist1	M-Twist|Pde|Ska10|Ska<m10Jus>|Twist|bHLHa38|pdt	twist basic helix-loop-helix transcription factor 1	protein-coding	0.025000	0.467662			-7(ATTAGCATGAGAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1298	chr19	38535031	38535231	+	0.02534	NA	intron (NM_019588, intron 1 of 31)	intron (NM_019588, intron 1 of 31)	10934	NM_019588	74055	Mm.34031	NM_019588	ENSMUSG00000024998	Plce1	4933403A21Rik|PLCepsilon|Plce|mKIAA1516	phospholipase C, epsilon 1	protein-coding	0.000000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-2166	chr6	143741769	143741969	+	0.02534	NA	Intergenic	L1ME3G|LINE|L1	-90581	NR_045732	73425	Mm.417844	NR_045732	ENSMUSG00000086887	1700060C16Rik	-	RIKEN cDNA 1700060C16 gene	ncRNA	0.005000	0.338308			
ePOU_nocontrol_ChIP_peaks_unique-2604	chr9	114400988	114401188	+	0.02534	NA	promoter-TSS (NM_001200002)	promoter-TSS (NM_001200002)	-7	NM_001200002	100504715	Mm.290516	NM_001200002	ENSMUSG00000079260	Tmppe	-	transmembrane protein with metallophosphoesterase domain	protein-coding	0.065000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-836	chr14	123624350	123624550	+	0.02534	NA	intron (NM_177393, intron 1 of 43)	Lx9|LINE|L1	2694	NM_177393	338370	Mm.255348	NM_177393	ENSMUSG00000000197	Nalcn	A530023G15Rik|AI849508|Vgcnl1	sodium leak channel, non-selective	protein-coding	0.000000	0.402985			
Oct4_nocontrol_ChIP_peaks_unique-229	chr16	42569363	42569563	+	0.02534	NA	Intergenic	Intergenic	-228812	NM_008083	14432	Mm.1222	NM_008083	ENSMUSG00000047261	Gap43	B-50|Basp2|GAP-43	growth associated protein 43	protein-coding	0.005000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-258	chr10	70066659	70066859	+	0.02534	NA	Intergenic	L2b|LINE|L2	-30362	NM_001111121	76551	Mm.281741	NM_001111121	ENSMUSG00000048701	Ccdc6	2810012H18Rik|AA536681|AA960498|AW061011	coiled-coil domain containing 6	protein-coding	0.015000	0.482587			
Oct4_nocontrol_ChIP_peaks_unique-480	chr7	105736455	105736655	+	0.02534	NA	promoter-TSS (NM_001161724)	promoter-TSS (NM_001161724)	29	NM_025897	101867	Mm.231400	NM_025897	ENSMUSG00000030888	Rrp8	1500003O22Rik|2900001K19Rik|AW538116|NML	ribosomal RNA processing 8, methyltransferase, homolog (yeast)	protein-coding	0.100000	0.696517			
Oct4_nocontrol_ChIP_peaks_unique-526	chr8	123477853	123478053	+	0.02534	NA	promoter-TSS (NM_054070)	promoter-TSS (NM_054070)	91	NR_028260	114896	Mm.287475	NM_054070	ENSMUSG00000031967	Afg3l1	1700047G05Rik|3110061K15Rik	AFG3-like AAA ATPase 1	protein-coding	0.105000	0.731343			
ePOU_nocontrol_ChIP_peaks_unique-341	chr11	4895273	4895473	+	0.02534	NA	promoter-TSS (NM_172438)	promoter-TSS (NM_172438)	30	NM_172438	107829	Mm.28969	NM_172438	ENSMUSG00000034274	Thoc5	1700060C24Rik|A430085L24Rik|Fmip|PK1.3|Sgk2	THO complex 5	protein-coding	0.085000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-1122	chr17	65598451	65598651	+	0.02534	NA	intron (NM_001355402, intron 1 of 6)	intron (NM_001355402, intron 1 of 6)	15004	NM_013933	30960	Mm.266767	NM_013933	ENSMUSG00000024091	Vapa	33kDa|VAP33	vesicle-associated membrane protein, associated protein A	protein-coding	0.000000	0.298507			36(CAATTGTCATGCTAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-537	chr12	43982561	43982761	+	0.02534	NA	Intergenic	RLTR13B1|LTR|ERVK	227407	NM_013760	27362	Mm.27432	NM_013760	ENSMUSG00000014905	Dnajb9	AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7	DnaJ heat shock protein family (Hsp40) member B9	protein-coding	0.005000	0.417910	-9(ATTGCATTATTCATG,+,0.00),-9(ATTGCATTATTCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1976	chr5	110839985	110840185	+	0.02534	NA	promoter-TSS (NM_001359835)	promoter-TSS (NM_001359835)	102	NM_016681	50883	Mm.279308	NM_016681	ENSMUSG00000029521	Chek2	CHK2|Cds1|HUCDS1|Rad53	checkpoint kinase 2	protein-coding	0.055000	0.542289			17(TGCTTCTTGTGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2456	chr8	111062480	111062680	+	0.02534	NA	Intergenic	tRNA-Gly-GGY|tRNA|tRNA	6241	NM_028274	72544	Mm.24174	NM_028274	ENSMUSG00000109941	Exosc6	2610510N21Rik|C76919|Mtr3	exosome component 6	protein-coding	0.040000	0.487562			
Oct4_nocontrol_ChIP_peaks_unique-364	chr3	117869016	117869216	+	0.02534	NA	promoter-TSS (NM_001190156)	promoter-TSS (NM_001190156)	-180	NM_001190156	76561	Mm.33824	NM_029655	ENSMUSG00000028007	Snx7	2510028H01Rik	sorting nexin 7	protein-coding	0.085000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-212	chr10	25271870	25272070	+	0.02534	NA	intron (NM_018747, intron 3 of 7)	intron (NM_018747, intron 3 of 7)	27193	NM_018747	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.000000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-624	chr13	4771861	4772061	+	0.02534	NA	Intergenic	Intergenic	-162797	NM_018859	56043	Mm.251908	NM_018859	ENSMUSG00000045410	Akr1e1	1810061I10Rik|Akr1e2	aldo-keto reductase family 1, member E1	protein-coding	0.000000	0.398010			70(TTTGTGTCATTCTTAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1005	chr16	44196320	44196520	+	0.02534	NA	intron (NM_001029889, intron 1 of 7)	intron (NM_001029889, intron 1 of 7)	23023	NM_001029889	207806	Mm.310566	NM_001029889	ENSMUSG00000068284	Usf3	5530400K22Rik|Gm1779|Gm608|mKIAA2018	upstream transcription factor family member 3	protein-coding	0.005000	0.353234			-92(ATTTAGTCATGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1904	chr5	24394619	24394819	+	0.02534	NA	intron (NM_029020, intron 1 of 15)	intron (NM_029020, intron 1 of 15)	563	NM_029020	74610	Mm.283914	NM_029020	ENSMUSG00000028973	Abcb8	4833412N02Rik|AA409895	ATP-binding cassette, sub-family B (MDR/TAP), member 8	protein-coding	0.070000	0.611940	20(CCTCAATTATTCATG,+,0.00),20(CCTCAATTATTCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1020	chr16	70716573	70716773	+	0.02534	NA	Intergenic	Intergenic	100248	NR_040474	52645	Mm.188475	NR_040474	ENSMUSG00000116792	D16Ertd519e	-	DNA segment, Chr 16, ERATO Doi 519, expressed	ncRNA	0.000000	0.273632			-99(AATTACATCACAAAGA,-,0.00),-38(GTTTTACCATGTAAAC,+,0.00),32(ATTTTCATTGCAATAA,-,0.00),53(ATTTACAAAGCAATTA,-,0.00)
merged_common-830	chr9	57521148	57521348	+	0.02534	NA	promoter-TSS (NM_007747)	promoter-TSS (NM_007747)	16	NM_007747	12858	Mm.273403	NM_007747	ENSMUSG00000000088	Cox5a	AA959768|CcOX	cytochrome c oxidase subunit 5A	protein-coding	0.150000	0.736318			
Oct4_nocontrol_ChIP_peaks_unique-324	chr2	130179415	130179615	+	0.02534	NA	promoter-TSS (NM_009225)	promoter-TSS (NM_009225)	-151	NM_009225	20638	Mm.88216	NM_009225	ENSMUSG00000027404	Snrpb	AL024368|AU018828|SM-B|SM11|SMB|SNRNP-B	small nuclear ribonucleoprotein B	protein-coding	0.040000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-1713	chr3	157151442	157151642	+	0.02534	NA	intron (NM_001039094, intron 5 of 6)	intron (NM_001039094, intron 5 of 6)	382548	NR_152231	381498	Mm.402095	NR_152231	ENSMUSG00000105834	4930592C13Rik	Gm1657|Gm43159	RIKEN cDNA 4930592C13 gene	ncRNA	0.000000	0.353234			
merged_common-208	chr12	76593912	76594112	+	0.02534	NA	intron (NM_013675, intron 32 of 35)	intron (NM_013675, intron 32 of 35)	-46087	NR_046044	100504549	Mm.440349	NR_046044	ENSMUSG00000112388	AI463170	-	expressed sequence AI463170	ncRNA	0.020000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-225	chr10	38973208	38973408	+	0.02534	NA	intron (NM_010681, intron 1 of 37)	intron (NM_010681, intron 1 of 37)	7793	NM_010681	16775	Mm.258065	NM_010681	ENSMUSG00000019846	Lama4	-	laminin, alpha 4	protein-coding	0.010000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-1343	chr2	19945428	19945628	+	0.02534	NA	Intergenic	Intergenic	-287631	NR_033642	100041244	Mm.407223	NR_033642		Gm3230	-	predicted gene 3230	ncRNA	0.005000	0.263682			
ePOU_nocontrol_ChIP_peaks_unique-399	chr11	58939017	58939217	+	0.02534	NA	promoter-TSS (NM_022423)	promoter-TSS (NM_022423)	-211	NM_022423	108660	Mm.249986	NM_022423	ENSMUSG00000020496	Rnf187	2410016F01Rik|AB030190|RACO-1	ring finger protein 187	protein-coding	0.030000	0.517413			
merged_common-174	chr11	106788850	106789050	+	0.02534	NA	promoter-TSS (NM_007840)	promoter-TSS (NM_007840)	-43	NM_001355676	13207	Mm.491096	NM_007840	ENSMUSG00000020719	Ddx5	2600009A06Rik|G17P1|HUMP68|Hlr1|p68	DEAD (Asp-Glu-Ala-Asp) box polypeptide 5	protein-coding	0.085000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-1197	chr18	44828599	44828799	+	0.02534	NA	promoter-TSS (NM_001163013)	promoter-TSS (NM_001163013)	34	NM_001163013	240255	Mm.244482	NM_001163013	ENSMUSG00000034653	Ythdc2	3010002F02Rik|BC037178|mYTHDC2	YTH domain containing 2	protein-coding	0.130000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-677	chr13	62856305	62856505	+	0.02534	NA	intron (NM_007994, intron 1 of 6)	intron (NM_007994, intron 1 of 6)	1995	NM_007994	14120	Mm.391871	NM_007994	ENSMUSG00000021456	Fbp2	Fbp-1|Fbp1|Rae-30	fructose bisphosphatase 2	protein-coding	0.020000	0.582090			
ePOU_nocontrol_ChIP_peaks_unique-2144	chr6	116056961	116057161	+	0.02534	NA	promoter-TSS (NM_001364577)	promoter-TSS (NM_001364577)	-50	NM_001364577	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.030000	0.487562			
Oct4_nocontrol_ChIP_peaks_unique-91	chr11	94630322	94630522	+	0.02534	NA	intron (NM_133807, intron 1 of 6)	intron (NM_133807, intron 1 of 6)	645	NM_133807	98238	Mm.172720	NM_133807	ENSMUSG00000020869	Lrrc59	AA959742|C78668	leucine rich repeat containing 59	protein-coding	0.050000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-443	chr11	86257635	86257835	+	0.02534	NA	promoter-TSS (NM_027421)	promoter-TSS (NM_027421)	-141	NM_001363129	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.060000	0.467662			41(ATTTAAATAACAATAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1630	chr3	89225967	89226167	+	0.02534	NA	intron (NM_013691, intron 21 of 22)	intron (NM_013691, intron 21 of 22)	1131	NR_030579	100124470		NR_030579	ENSMUSG00000076255	Mir92b	Mirn92b|mir-92b|mmu-mir-92b	microRNA 92b	ncRNA	0.015000	0.557214			
ePOU_nocontrol_ChIP_peaks_unique-656	chr13	40977904	40978104	+	0.02534	NA	intron (NR_155347, intron 1 of 4)	intron (NR_155347, intron 1 of 4)	-23006	NM_026550	68083	Mm.24789	NM_026550	ENSMUSG00000038683	Pak1ip1	5830431I15Rik|5930415H02Rik|AA419825|AI314040|AW556169|Gdpd1|PIP1	PAK1 interacting protein 1	protein-coding	0.015000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-577	chr12	76370372	76370572	+	0.02534	NA	promoter-TSS (NM_028356)	promoter-TSS (NM_028356)	-48	NM_178744	268564	Mm.77065	NM_178744	ENSMUSG00000033454	Zbtb1	9430077A12|AI256369|Bsg2|C430003J21Rik	zinc finger and BTB domain containing 1	protein-coding	0.130000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-1847	chr4	130519978	130520178	+	0.02534	NA	Intergenic	Intergenic	53958	NM_025998	67149	Mm.423029	NM_025998	ENSMUSG00000078532	Nkain1	2610200G18Rik|2810426C15Rik	Na+/K+ transporting ATPase interacting 1	protein-coding	0.035000	0.587065			
ePOU_nocontrol_ChIP_peaks_unique-1958	chr5	97069320	97069520	+	0.02534	NA	intron (NM_080708, intron 14 of 15)	intron (NM_080708, intron 14 of 15)	42176	NM_198422	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.000000	0.328358			-90(TCTCTGTTTTGCATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2282	chr7	113594425	113594625	+	0.02534	NA	Intergenic	Intergenic	-29538	NR_126544	69295	Mm.396150	NR_126544	ENSMUSG00000084984	Far1os	1700006P19Rik	fatty acyl CoA reductase 1, opposite strand	ncRNA	0.015000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-2112	chr6	85333428	85333628	+	0.02534	NA	promoter-TSS (NM_178639)	promoter-TSS (NM_178639)	-106	NM_178639	94282	Mm.121485	NM_178639	ENSMUSG00000033720	Sfxn5	C230001H08Rik	sideroflexin 5	protein-coding	0.060000	0.606965			
merged_common-767	chr7	143069220	143069420	+	0.02534	NA	promoter-TSS (NM_020285)	promoter-TSS (NM_020285)	-48	NM_001115085	56844	Mm.139675	NM_020285	ENSMUSG00000045752	Tssc4	AA241958|ESTM671070	tumor-suppressing subchromosomal transferable fragment 4	protein-coding	0.075000	0.557214			
ePOU_nocontrol_ChIP_peaks_unique-142	chr1	164261641	164261841	+	0.02534	NA	intron (NM_054087, intron 3 of 5)	intron (NM_054087, intron 3 of 5)	12695	NM_001276455	116914	Mm.35444	NM_054087	ENSMUSG00000040918	Slc19a2	AV276020|AW322295|DDA1|THTR1|TRMA|ThTr-1	solute carrier family 19 (thiamine transporter), member 2	protein-coding	0.010000	0.467662			47(ATTTCCATAGCAGAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2281	chr7	112642052	112642252	+	0.02534	NA	Intergenic	Intergenic	-37204	NM_001166584	21676	Mm.24685	NM_009346	ENSMUSG00000055320	Tead1	2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1	TEA domain family member 1	protein-coding	0.010000	0.447761			-89(ATTTGCCCAACAAAAA,-,0.00)
merged_common-797	chr8	88362003	88362203	+	0.02534	NA	promoter-TSS (NM_012047)	promoter-TSS (NM_012047)	88	NM_012047	26992	Mm.5400	NM_012047	ENSMUSG00000031660	Brd7	BP75|CELTIX1|Ptpn13ip	bromodomain containing 7	protein-coding	0.175000	0.746269			
ePOU_nocontrol_ChIP_peaks_unique-240	chr10	59879664	59879864	+	0.02534	NA	exon (NM_019965, exon 1 of 9)	exon (NM_019965, exon 1 of 9)	173	NM_019965	56709	Mm.103610	NM_019965	ENSMUSG00000020109	Dnajb12	Dj10|mDj10	DnaJ heat shock protein family (Hsp40) member B12	protein-coding	0.100000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1268	chr19	10895240	10895440	+	0.02534	NA	5' UTR (NM_001253843, exon 1 of 16)	5' UTR (NM_001253843, exon 1 of 16)	109	NM_001253843	28000	Mm.491104	NM_134129	ENSMUSG00000024735	Prpf19	AA617263|AL024362|D19Wsu55e|NMP200|PSO4|Prp19|Snev	pre-mRNA processing factor 19	protein-coding	0.105000	0.686567			
ePOU_nocontrol_ChIP_peaks_unique-2440	chr8	93369377	93369577	+	0.02534	NA	intron (NM_001370830, intron 4 of 13)	RLTR12E|LTR|ERVK	10300	NM_001370830	75704	Mm.480920	NM_001370830	ENSMUSG00000074156	Ces1h	2310039D24Rik	carboxylesterase 1H	protein-coding	0.000000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-812	chr14	93122970	93123170	+	0.02534	NA	intron (NM_001081377, intron 4 of 4)	intron (NM_001081377, intron 4 of 4)	767599	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.010000	0.378109			-17(ATTTGAAAGAGAATGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-101	chr1	128446427	128446627	+	0.02534	NA	Intergenic	Lx7|LINE|L1	-29111	NM_145507	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.015000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-977	chr16	24906064	24906264	+	0.02534	NA	intron (NM_178665, intron 10 of 12)	intron (NM_178665, intron 10 of 12)	-153475	NR_040374	319487	Mm.137341	NR_040374	ENSMUSG00000096960	A230028O05Rik	-	RIKEN cDNA A230028O05 gene	ncRNA	0.005000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-1978	chr5	112342910	112343110	+	0.02534	NA	promoter-TSS (NM_027323)	promoter-TSS (NM_027323)	30	NR_153105	70118	Mm.172947	NM_027323	ENSMUSG00000029346	Srrd	2810002G02Rik|Srr1	SRR1 domain containing	protein-coding	0.160000	0.771144			
merged_common-145	chr11	46549114	46549314	+	0.02534	NA	intron (NM_001163353, intron 1 of 3)	intron (NM_001163353, intron 1 of 3)	801	NM_001163353	675689	Mm.478806	NM_001163353		Gm12171	-	predicted gene 12171	protein-coding	0.010000	0.298507			
ePOU_nocontrol_ChIP_peaks_unique-2193	chr7	27331039	27331239	+	0.02534	NA	intron (NM_175641, intron 4 of 32)	CpG	2509	NM_001113549	108075	Mm.272251	NM_175641	ENSMUSG00000040488	Ltbp4	2310046A13Rik	latent transforming growth factor beta binding protein 4	protein-coding	0.090000	0.706468			
merged_common-849	chr9	123461890	123462090	+	0.00492	NA	3' UTR (NM_001348168, exon 22 of 22)	3' UTR (NM_001348168, exon 22 of 22)	-16711	NM_013860	29806	Mm.10987	NM_013860	ENSMUSG00000025239	Limd1	AW822033|D9Ertd192e	LIM domains containing 1	protein-coding	0.055000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-184	chr1	191062896	191063096	+	-0.00559	NA	promoter-TSS (NM_198654)	promoter-TSS (NM_198654)	-25	NM_198654	381318	Mm.32504	NM_198654	ENSMUSG00000062510	Nsl1	4833432M17Rik|AI451597|Gm105|Gm984	NSL1, MIS12 kinetochore complex component	protein-coding	0.115000	0.656716			
merged_common-828	chr9	49996672	49996872	+	-0.03024	NA	Intergenic	Intergenic	-197379	NM_001311065	17967	Mm.4974	NM_010875	ENSMUSG00000039542	Ncam1	CD56|E-NCAM|NCAM-1|Ncam	neural cell adhesion molecule 1	protein-coding	0.000000	0.283582			-33(ATTTCAATAACAATAC,-,0.00)
merged_common-308	chr15	84622085	84622285	+	-0.03024	NA	Intergenic	Intergenic	-41021	NM_001346662	109270	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.015000	0.497512		2(AATGAATATGCATA,+,0.00),2(AATGAATATGCATA,-,0.00)	39(ATTTGCATGACAATCG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2220	chr7	58861953	58862153	+	-0.03024	NA	Intergenic	Intergenic	203851	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.000000	0.407960			-84(ATCTGCAAGACTAAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2245	chr7	81213168	81213368	+	-0.03024	NA	promoter-TSS (NM_008803)	promoter-TSS (NM_008803)	3	NM_008803	18584	Mm.371577	NM_008803	ENSMUSG00000025584	Pde8a	AI551852|Pde8	phosphodiesterase 8A	protein-coding	0.150000	0.731343			
ePOU_nocontrol_ChIP_peaks_unique-1133	chr17	74338822	74339022	+	-0.03024	NA	promoter-TSS (NM_001162870)	promoter-TSS (NM_001162870)	-65	NM_001357738	50850	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	0.155000	0.796020			
ePOU_nocontrol_ChIP_peaks_unique-1528	chr3	5575919	5576119	+	-0.03024	NA	intron (NM_008994, intron 1 of 5)	CpG	229	NM_001163306	19302	Mm.132336	NM_008994	ENSMUSG00000040374	Pex2	D3Ertd138e|PAF-1|PMP35|Pxmp3	peroxisomal biogenesis factor 2	protein-coding	0.150000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-794	chr14	67936685	67936885	+	-0.03024	NA	Intergenic	Intergenic	-3213	NM_177780	68813	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.005000	0.368159			-75(GTCTTGTTATTAAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-199	chr15	23415396	23415596	+	-0.03024	NA	intron (NM_001081299, intron 8 of 11)	intron (NM_001081299, intron 8 of 11)	379033	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0.000000	0.422886			
merged_common-489	chr2	106750911	106751111	+	-0.03024	NA	intron (NM_001356554, intron 3 of 6)	intron (NM_001356554, intron 3 of 6)	55410	NM_029837	77015	Mm.45628	NM_029837	ENSMUSG00000016386	Mpped2	239Fb|2700082O15Rik|AV354767|AW060960	metallophosphoesterase domain containing 2	protein-coding	0.010000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-783	chr14	55560376	55560576	+	-0.03024	NA	promoter-TSS (NM_001199009)	promoter-TSS (NM_001199009)	447	NR_037572	28199	Mm.11535	NM_133734	ENSMUSG00000022214	Dcaf11	0710008A13Rik|C76035|D14Ucla1|Dacf11|GLO14|Wdr23	DDB1 and CUL4 associated factor 11	protein-coding	0.085000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-731	chr13	109706624	109706824	+	-0.03024	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-197085	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.010000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-959	chr16	16559415	16559615	+	-0.03024	NA	intron (NM_001301817, intron 1 of 16)	intron (NM_001301817, intron 1 of 16)	704	NM_139232	224014	Mm.256131	NM_139232	ENSMUSG00000022788	Fgd4	9030023J02Rik|9330209B17Rik|Frabp|ZFYVE6	FYVE, RhoGEF and PH domain containing 4	protein-coding	0.005000	0.417910			-20(ATAACAATGACAAAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-468	chr11	102040251	102040451	+	-0.03024	NA	Intergenic	Intergenic	-1160	NM_001160711	52685	Mm.266885	NM_027987	ENSMUSG00000017309	Cd300lg	2310016B05Rik|Clm9|D11Ertd736e	CD300 molecule like family member G	protein-coding	0.035000	0.557214			
ePOU_nocontrol_ChIP_peaks_unique-1410	chr2	80576561	80576761	+	-0.03024	NA	intron (NM_001355410, intron 1 of 31)	intron (NM_001355410, intron 1 of 31)	4521	NM_016965	50884	Mm.25203	NM_016965	ENSMUSG00000027002	Nckap1	C79304|H19|Hem-2|Hem2|Nap1|mKIAA0587|mh19|p125Nap1	NCK-associated protein 1	protein-coding	0.000000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-2295	chr7	118828025	118828225	+	-0.03024	NA	intron (NM_027815, intron 27 of 30)	L1MB8|LINE|L1	27488	NM_001168220	66356	Mm.482278	NM_023197	ENSMUSG00000030980	Knop1	2310008H09Rik|Tsg118	lysine rich nucleolar protein 1	protein-coding	0.025000	0.502488			
merged_common-189	chr12	25124689	25124889	+	-0.03024	NA	Intergenic	Intergenic	-4385	NR_045844	432641	Mm.112955	NR_045844		Gm17746	-	predicted gene, 17746	ncRNA	0.030000	0.537313		-6(AATGCATATGGACG,-,0.00)	
merged_common-429	chr19	30505548	30505748	+	-0.03024	NA	Intergenic	Intergenic	34070	NR_003650	546723	Mm.301509	NM_001037169		Ppp1r2-ps3	EG546723|Gm5972	protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 3	pseudo	0.015000	0.398010			-34(ATTTGCAATTCAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1994	chr5	124552717	124552917	+	-0.03024	NA	promoter-TSS (NM_001190795)	promoter-TSS (NM_001190795)	-47	NM_001190795	67848	Mm.281601	NM_026409	ENSMUSG00000029389	Ddx55	2810021H22Rik|mKIAA1595	DEAD (Asp-Glu-Ala-Asp) box polypeptide 55	protein-coding	0.120000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-300	chr10	102373484	102373684	+	-0.03024	NA	promoter-TSS (NM_026243)	promoter-TSS (NM_026243)	-853	NM_026243	67569	Mm.25252	NM_026243	ENSMUSG00000019888	Mgat4c	9130411I17Rik|GntIVh	MGAT4 family, member C	protein-coding	0.005000	0.318408		64(TTTGCATATGAATG,-,0.00)	63(ATTTGCATATGAATGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1784	chr4	83093966	83094166	+	-0.03024	NA	Intergenic	L1MA6|LINE|L1	-41900	NM_001198811	329872	Mm.242337	NM_177863	ENSMUSG00000059049	Frem1	BC037594|D430009N09|D630008K06|crf11|eye<m02Jus>|eyes2|heb|qbrick	Fras1 related extracellular matrix protein 1	protein-coding	0.005000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-23	chr1	47307091	47307291	+	-0.03024	NA	Intergenic	BGLII|LTR|ERVK	159934	NR_105768	102466969		NR_105768	ENSMUSG00000098876	Mir6350	Gm27958|mmu-mir-6350	microRNA 6350	ncRNA	0.000000	0.353234			-84(TCTTTATTTTACAAAT,+,0.00),41(CTATCCATAACAATGC,-,0.00)
merged_common-711	chr6	92667765	92667965	+	-0.03024	NA	intron (NM_001081146, intron 2 of 8)	intron (NM_001081146, intron 2 of 8)	38319	NM_001081146	243548	Mm.248820	NM_001081146	ENSMUSG00000030020	Prickle2	6230400G14Rik|6720451F06Rik|mpk2	prickle planar cell polarity protein 2	protein-coding	0.000000	0.383085			28(CTATTGTTATGTAGTT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-254	chr18	22385554	22385754	+	-0.03024	NA	intron (NM_001167777, intron 2 of 12)	intron (NM_001167777, intron 2 of 12)	40565	NM_001167777	211961	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3, transcriptional regulator	protein-coding	0.010000	0.412935			-10(ACACACTTTTGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2135	chr6	108661537	108661737	+	-0.03024	NA	promoter-TSS (NR_104577)	promoter-TSS (NR_104577)	-703	NR_104577	75394	Mm.395061	NR_040757	ENSMUSG00000087341	0610040F04Rik	-	RIKEN cDNA 0610040F04 gene	ncRNA	0.060000	0.577114			
Oct4_nocontrol_ChIP_peaks_unique-490	chr7	130166477	130166677	+	-0.03024	NA	intron (NM_201601, intron 15 of 15)	intron (NM_201601, intron 15 of 15)	100231	NM_201601	14183	Mm.16340	NM_010207	ENSMUSG00000030849	Fgfr2	AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs	fibroblast growth factor receptor 2	protein-coding	0.015000	0.348259			-29(TATTTGTTTTTTAAAT,+,0.00)
merged_common-701	chr6	82377554	82377754	+	-0.03024	NA	Intergenic	Intergenic	-24821	NM_009313	21336	Mm.8055	NM_009313	ENSMUSG00000030043	Tacr1	Nk1r|Spr|Tac1r	tachykinin receptor 1	protein-coding	0.010000	0.398010			-85(ACATTGTCATGTAAAC,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-909	chr15	80083368	80083568	+	-0.03024	NA	promoter-TSS (NM_013762)	promoter-TSS (NM_013762)	-62	NM_013762	27367	Mm.290771	NM_013762	ENSMUSG00000060036	Rpl3	F2|J1	ribosomal protein L3	protein-coding	0.090000	0.527363			
merged_common-300	chr15	63612878	63613078	+	-0.03024	NA	Intergenic	Intergenic	-133370	NR_045279	432958	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.005000	0.402985	31(AATGCCTTATTCAAA,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-501	chr8	33565291	33565491	+	-0.03024	NA	Intergenic	Intergenic	-5153	NM_031374	104271	Mm.280624	NM_031374	ENSMUSG00000009628	Tex15	2210014E14Rik|AL022622|AU022940	testis expressed gene 15	protein-coding	0.010000	0.328358			
merged_common-812	chr8	116921635	116921835	+	-0.03024	NA	promoter-TSS (NM_026844)	promoter-TSS (NM_026844)	-5	NM_028131	72155	Mm.23185	NM_028131	ENSMUSG00000031756	Cenpn	2610510J17Rik|AI426416|AW545024	centromere protein N	protein-coding	0.105000	0.686567			
ePOU_nocontrol_ChIP_peaks_unique-2059	chr6	34205100	34205300	+	-0.03024	NA	Intergenic	RMER1B|Other|Other	-28146	NM_021435	58246	Mm.245527	NM_021435	ENSMUSG00000018999	Slc35b4	4930474D06Rik|AB041549|AW494345	solute carrier family 35, member B4	protein-coding	0.010000	0.497512			33(CCTGTGTCATGGAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-163	chr1	178527115	178527315	+	-0.03024	NA	Intergenic	L1ME2z|LINE|L1	-1910	NM_001161665	269152	Mm.129727	NM_177724	ENSMUSG00000026494	Kif26b	4832420M10|BC056349|D230039L06Rik	kinesin family member 26B	protein-coding	0.030000	0.328358			
ePOU_nocontrol_ChIP_peaks_unique-935	chr15	98534033	98534233	+	-0.03024	NA	non-coding (NR_153345, exon 1 of 11)	non-coding (NR_153345, exon 1 of 11)	136	NM_001289438	69612	Mm.229107	NM_133714	ENSMUSG00000022992	Kansl2	2310037I24Rik|B930009D17	KAT8 regulatory NSL complex subunit 2	protein-coding	0.105000	0.671642			
Oct4_nocontrol_ChIP_peaks_unique-98	chr11	104305846	104306046	+	-0.03024	NA	intron (NM_001038609, intron 6 of 11)	intron (NM_001038609, intron 6 of 11)	74510	NM_001038609	17762	Mm.1287	NM_010838	ENSMUSG00000018411	Mapt	AI413597|AW045860|Mtapt|Tau	microtubule-associated protein tau	protein-coding	0.030000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-1662	chr3	113193926	113194126	+	-0.03024	NA	Intergenic	RLTR13B4|LTR|ERVK	-37299	NM_001190403	545562	Mm.462977	NM_001190403		Amy2b	Amy-X|Amy2|Amy2-2|Amy2a|PA|mAmy2-1	amylase 2b	protein-coding	0.000000	0.412935	-30(CATGAATAATGCAAT,+,0.00),-30(CATGAATAATGCAAT,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-215	chr15	82624134	82624334	+	-0.03024	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-3327	NM_145474	223706	Mm.436843	NM_145474	ENSMUSG00000094559	Cyp2d34	-	cytochrome P450, family 2, subfamily d, polypeptide 34	protein-coding	0.005000	0.373134		73(CTTACATATGCATA,+,0.00),79(TATGCATATGGAGT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1643	chr3	95893839	95894039	+	-0.03024	NA	promoter-TSS (NM_146104)	promoter-TSS (NM_146104)	18	NM_146104	226548	Mm.306954	NM_146104	ENSMUSG00000015750	Aph1a	6530402N02Rik|APH-1a	aph1 homolog A, gamma secretase subunit	protein-coding	0.075000	0.656716			
merged_common-424	chr19	16495656	16495856	+	-0.03024	NA	intron (NM_008137, intron 1 of 6)	Lx9|LINE|L1	60089	NM_008137	14675	Mm.313181	NM_008137	ENSMUSG00000024697	Gna14	AU023208	guanine nucleotide binding protein, alpha 14	protein-coding	0.000000	0.432836	-1(TATACATAATGTATA,+,0.00),-1(TATACATAATGTATA,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-470	chr7	62125929	62126129	+	-0.03024	NA	Intergenic	Intergenic	-40719	NR_049204	100885843		NR_049204	ENSMUSG00000095154	Mir344i	Gm26031|mir-344i|mmu-mir-344i	microRNA 344i	ncRNA	0.000000	0.253731			80(ACATGTTCATGTATAT,+,0.00)
merged_common-296	chr15	52968064	52968264	+	-0.03024	NA	Intergenic	Intergenic	255719	NM_027212	69790	Mm.195562	NM_027212	ENSMUSG00000038622	Med30	1810038N03Rik|2510044J04Rik|TRAP25|Thrap6	mediator complex subunit 30	protein-coding	0.005000	0.502488			
merged_common-60	chr1	161411465	161411665	+	-0.03024	NA	intron (NM_009452, intron 1 of 2)	RLTR17B_Mm|LTR|ERVK	16127	NM_009452	22164	Mm.4994	NM_009452	ENSMUSG00000026700	Tnfsf4	Ath-1|Ath1|CD134L|OX-40L|Ox40l|TXGP1|Tnlg2b|Txgp1l|gp34	tumor necrosis factor (ligand) superfamily, member 4	protein-coding	0.050000	0.373134		-65(TATGCATATGCGTA,+,0.00),-65(TATGCATATGCGTA,-,0.00),-35(TATGTATATGCATA,+,0.00),-35(TATGTATATGCATA,-,0.00),-29(TATGCATATGTATA,+,0.00),-29(TATGCATATGTATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2546	chr9	67043835	67044035	+	-0.03024	NA	promoter-TSS (NM_001164253)	promoter-TSS (NM_001164253)	-64	NM_001164254	22003	Mm.121878	NM_024427	ENSMUSG00000032366	Tpm1	AA986836|AI854628|TM2|TPM1kappa|Tm3|Tmpa|Tpm-1|alpha-TM	tropomyosin 1, alpha	protein-coding	0.115000	0.736318			
ePOU_nocontrol_ChIP_peaks_unique-1281	chr19	24961628	24961828	+	-0.03024	NA	promoter-TSS (NR_033744)	promoter-TSS (NR_033744)	-112	NM_146097	226043	Mm.272127	NM_146097	ENSMUSG00000024878	Cbwd1	AV349248|BC018472	COBW domain containing 1	protein-coding	0.080000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-340	chr11	4135105	4135305	+	-0.03024	NA	promoter-TSS (NM_001363143)	promoter-TSS (NM_001363143)	45	NM_001363143	71673	Mm.240586	NM_027859	ENSMUSG00000003581	Rnf215	0610009J22Rik|AW557025|C77903	ring finger protein 215	protein-coding	0.115000	0.746269			
ePOU_nocontrol_ChIP_peaks_unique-971	chr16	22847941	22848141	+	-0.03024	NA	intron (NM_001316746, intron 1 of 7)	ORR1C1-int|LTR|ERVL-MaLR	9628	NM_001081368	70573	Mm.68291	NM_001081368	ENSMUSG00000004462	Tbccd1	5730478M09Rik|AU015083|BB165076	TBCC domain containing 1	protein-coding	0.000000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-1522	chr2	180104516	180104716	+	-0.03024	NA	promoter-TSS (NR_102309)	promoter-TSS (NR_102309)	-209	NR_102309	99296	Mm.285360	NM_133849	ENSMUSG00000039059	Hrh3	AW049250|Eae8|H3R|HH3R	histamine receptor H3	protein-coding	0.125000	0.746269			
ePOU_nocontrol_ChIP_peaks_unique-1524	chr2	180709156	180709356	+	-0.03024	NA	promoter-TSS (NM_001289652)	promoter-TSS (NM_001289652)	743	NM_177852	23856	Mm.253836	NM_011805	ENSMUSG00000038914	Dido1	6720461J16Rik|D130048F08Rik|DATF-1|DIO-1|Datf1|dido	death inducer-obliterator 1	protein-coding	0.020000	0.417910		-16(CATAAATATGCAAA,+,0.00),-16(CATAAATATGCAAA,-,0.00)	-67(CTTTACATTACAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1104	chr17	45686204	45686404	+	-0.03024	NA	promoter-TSS (NM_026732)	promoter-TSS (NM_026732)	-45	NM_026732	68463	Mm.379158	NM_026732	ENSMUSG00000023939	Mrpl14	1110006I11Rik|AI846816|MRP-L32|Rpml32	mitochondrial ribosomal protein L14	protein-coding	0.125000	0.771144			
ePOU_nocontrol_ChIP_peaks_unique-1108	chr17	48409870	48410070	+	-0.03024	NA	promoter-TSS (NM_001357904)	promoter-TSS (NM_001357904)	-30	NM_207219	106821	Mm.203943	NM_207219	ENSMUSG00000040771	Oard1	AI314976|AW558560	O-acyl-ADP-ribose deacylase 1	protein-coding	0.070000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-444	chr11	86266443	86266643	+	-0.03024	NA	TTS (NM_001080931)	TTS (NM_001080931)	-8949	NM_001363129	70422	Mm.171304	NM_027421	ENSMUSG00000018068	Ints2	2810417D08Rik|AA408260|AI987735|mKIAA1287	integrator complex subunit 2	protein-coding	0.010000	0.298507	43(AATGCATGATTCATA,+,0.00),43(AATGCATGATTCATA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1878	chr4	155689585	155689785	+	-0.03024	NA	Intergenic	RLTR35B_MM|LTR|ERVL	-4657	NM_178699	230991	Mm.29083	NM_178699	ENSMUSG00000074738	Fndc10	B930041F14Rik|MNCb-3966	fibronectin type III domain containing 10	protein-coding	0.000000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-1375	chr2	50296505	50296705	+	-0.03024	NA	promoter-TSS (NR_040361)	promoter-TSS (NR_040361)	196	NM_001348200	109129	Mm.29214	NM_133839	ENSMUSG00000026766	Mmadhc	2010311D03Rik|AI314967|CblD	methylmalonic aciduria (cobalamin deficiency) cblD type, with homocystinuria	protein-coding	0.090000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-908	chr15	79328246	79328446	+	-0.03024	NA	promoter-TSS (NM_016915)	promoter-TSS (NM_016915)	25	NM_001199025	53357	Mm.155620	NM_016915	ENSMUSG00000042632	Pla2g6	BB112799|PNPLA9|iPLA(2)beta|iPLA2|iPLA2beta	phospholipase A2, group VI	protein-coding	0.095000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-921	chr15	89180839	89181039	+	-0.03024	NA	promoter-TSS (NM_001284506)	promoter-TSS (NM_001284506)	-151	NM_001284506	140570	Mm.267514	NM_138749	ENSMUSG00000036606	Plxnb2	Debt|plexin-B2	plexin B2	protein-coding	0.075000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-2225	chr7	66158774	66158974	+	-0.03024	NA	intron (NM_001081163, intron 2 of 2)	intron (NM_001081163, intron 2 of 2)	49382	NM_001081163	269941	Mm.333916	NM_001081163	ENSMUSG00000032640	Chsy1	-	chondroitin sulfate synthase 1	protein-coding	0.005000	0.388060			34(ATCAACATAACAATTA,-,0.00)
merged_common-201	chr12	45327988	45328188	+	-0.03024	NA	Intergenic	L1_Mur3|LINE|L1	-253605	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.000000	0.358209			-12(TTTTCCATGACAAAAG,-,0.00)
merged_common-325	chr16	24802104	24802304	+	-0.03024	NA	intron (NM_178665, intron 8 of 12)	intron (NM_178665, intron 8 of 12)	80349	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.000000	0.323383			
merged_common-318	chr16	14822410	14822610	+	-0.03024	NA	Intergenic	Intergenic	-84136	NM_025769	66793	Mm.100270	NM_025769	ENSMUSG00000068617	Efcab1	4930449A16Rik|5430404L10Rik	EF-hand calcium binding domain 1	protein-coding	0.000000	0.318408		-30(TATGCATATTCATT,+,0.00),-30(TATGCATATTCATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-763	chr14	31730040	31730240	+	-0.03024	NA	intron (NM_001024604, intron 12 of 27)	intron (NM_001024604, intron 12 of 27)	89083	NM_025295	26363	Mm.282679	NM_025295	ENSMUSG00000021900	Btd	-	biotinidase	protein-coding	0.000000	0.273632			78(GTATTCTAATGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-635	chr13	18856369	18856569	+	-0.03024	NA	intron (NM_172120, intron 25 of 28)	intron (NM_172120, intron 25 of 28)	-91882	NM_001289546	218038	Mm.101650	NM_175007	ENSMUSG00000021314	Amph	-	amphiphysin	protein-coding	0.005000	0.338308			-65(TTTAACATAAAAATGG,-,0.00),4(CCTTAGTTCTGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-74	chr1	85850718	85850918	+	-0.03024	NA	3' UTR (NM_001355046, exon 10 of 10)	3' UTR (NM_001355046, exon 10 of 10)	-43692	NM_022417	64294	Mm.29870	NM_022417	ENSMUSG00000026223	Itm2c	3110038L02Rik|BRI3|Bricd2c|E25|E25C|ITM3	integral membrane protein 2C	protein-coding	0.005000	0.378109	-71(ACTGAATTATTCATT,+,0.00),-71(ACTGAATTATTCATT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2504	chr9	32989843	32990043	+	-0.03024	NA	Intergenic	Intergenic	-60977	NR_131058	330917	Mm.488283	NR_131058		Gm27162	A430016B06	predicted gene 27162	ncRNA	0.000000	0.348259			48(GTATTGTATAGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-576	chr12	76340581	76340781	+	-0.03024	NA	Intergenic	B1_Mur2|SINE|Alu	15790	NM_001101471	238276	Mm.311452	NM_001101471	ENSMUSG00000021057	Akap5	3526401B18Rik|AKAP 150|AKAP-5|AKAP150|BB098886|Gm258|P150	A kinase (PRKA) anchor protein 5	protein-coding	0.010000	0.442786		-85(CATGCATATACACA,+,0.00)	-92(CCTGTCTCATGCATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-213	chr10	25279469	25279669	+	-0.03024	NA	intron (NM_018747, intron 3 of 7)	intron (NM_018747, intron 3 of 7)	19594	NM_018747	432442	Mm.485937	NM_018747	ENSMUSG00000039166	Akap7	6430401D08|AI662165|AKAP15|Akap18|BB170514	A kinase (PRKA) anchor protein 7	protein-coding	0.010000	0.457711			-85(ATTTGCATACAAATTT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1279	chr19	23707297	23707497	+	-0.03024	NA	intron (NM_028208, intron 4 of 6)	intron (NM_028208, intron 4 of 6)	19997	NM_028208	72351	Mm.474795	NM_028208	ENSMUSG00000074925	Ptar1	1700084D09Rik|2010013L17Rik|4930428J16Rik|AI449677	protein prenyltransferase alpha subunit repeat containing 1	protein-coding	0.005000	0.318408			
ePOU_nocontrol_ChIP_peaks_unique-1592	chr3	65358780	65358980	+	-0.03024	NA	intron (NM_010597, intron 11 of 13)	intron (NM_010597, intron 11 of 13)	-9451	NR_040390	319798	Mm.445698	NR_040390		A730090N16Rik	-	RIKEN cDNA A730090N16 gene	ncRNA	0.005000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-1341	chr2	17943096	17943296	+	-0.03024	NA	Intergenic	Intergenic	53762	NM_026627	68231	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0.000000	0.407960		84(CCTGAATATTCATG,+,0.00),84(CCTGAATATTCATG,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-550	chr9	121297367	121297567	+	-0.03024	NA	promoter-TSS (NR_152160)	promoter-TSS (NR_152160)	-35	NR_152160	67095	Mm.491112	NM_175114	ENSMUSG00000032536	Trak1	2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042	trafficking protein, kinesin binding 1	protein-coding	0.185000	0.815920			
ePOU_nocontrol_ChIP_peaks_unique-2003	chr5	135489254	135489454	+	-0.03024	NA	intron (NM_146001, intron 1 of 30)	CpG	55768	NM_146001	215114	Mm.280805	NM_146001	ENSMUSG00000039959	Hip1	2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113	huntingtin interacting protein 1	protein-coding	0.100000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-781	chr14	52279399	52279599	+	-0.03024	NA	promoter-TSS (NM_172601)	promoter-TSS (NM_172601)	-104	NM_172601	76338	Mm.32870	NM_172601	ENSMUSG00000022159	Rab2b	1500012D09Rik|4930528G15Rik|A230002G14|D530043M21Rik	RAB2B, member RAS oncogene family	protein-coding	0.085000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-1097	chr17	35134998	35135198	+	-0.03024	NA	promoter-TSS (NM_057171)	promoter-TSS (NM_057171)	-80	NM_001252468	224727	Mm.203962	NM_057171	ENSMUSG00000024392	Bag6	2410045D21Rik|AA408914|BAG-6|Bat3|D17H6S52E|G3|Scythe	BCL2-associated athanogene 6	protein-coding	0.080000	0.552239			
Oct4_nocontrol_ChIP_peaks_unique-318	chr2	122018984	122019184	+	-0.03024	NA	Intergenic	RMER12C|LTR|ERVK	-9496	NM_144545	78655	Mm.458184	NM_144545	ENSMUSG00000027236	Eif3j1	1810016I04Rik|2700079K05Rik|AA409117|AA409446|C78575|Eif3j|Eif3j-1|Eif3j-2|Eif3j2|Eif3s1|eIF-3-alpha-A|eIF-3-alpha-B|eIF3-alpha|eIF3-p35|eIF3j-A|eIF3j-B	eukaryotic translation initiation factor 3, subunit J1	protein-coding	0.000000	0.338308		-23(CATACATATTCATA,+,0.00),-23(CATACATATTCATA,-,0.00)	12(GATTTCTCATTTACAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2223	chr7	65382423	65382623	+	-0.03024	NA	Intergenic	(CA)n|Simple_repeat|Simple_repeat	-11279	NM_009386	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.005000	0.402985			-88(ATATGCACCATAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-759	chr14	29226066	29226266	+	-0.03024	NA	intron (NM_009785, intron 11 of 37)	intron (NM_009785, intron 11 of 37)	207958	NM_176920	319476	Mm.95780	NM_176920	ENSMUSG00000045776	Lrtm1	A930016D02Rik	leucine-rich repeats and transmembrane domains 1	protein-coding	0.000000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-580	chr12	79018570	79018770	+	-0.03024	NA	Intergenic	HAL1b|LINE|L1	-10493	NM_181073	211945	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	0.000000	0.288557			
Oct4_nocontrol_ChIP_peaks_unique-20	chr1	91413279	91413479	+	-0.03024	NA	promoter-TSS (NM_001360899)	promoter-TSS (NM_001360899)	-157	NM_019479	55927	Mm.280029	NM_019479	ENSMUSG00000067071	Hes6	AI326893|bHLHb41	hairy and enhancer of split 6	protein-coding	0.065000	0.661692			
Oct4_nocontrol_ChIP_peaks_unique-77	chr11	29448508	29448708	+	-0.03024	NA	intron (NM_001363369, intron 8 of 28)	intron (NM_001363369, intron 8 of 28)	66425	NM_026465	67939	Mm.251087	NM_026465	ENSMUSG00000032673	Prorsd1	2010316F05Rik|Ncrna00117|Prdxdd1	prolyl-tRNA synthetase domain containing 1	protein-coding	0.000000	0.273632		-93(TTTACATATTCATT,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1947	chr5	80617846	80618046	+	-0.03024	NA	Intergenic	Intergenic	-402625	NM_001347369	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.005000	0.293532		-7(AATGAATATGCATT,+,0.00),-7(AATGAATATGCATT,-,0.00)	-18(TTTAAAATGAAAATGA,-,0.00),2(GCATTGATATGCAAAG,+,0.00)
merged_common-265	chr14	63500421	63500621	+	-0.03024	NA	intron (NM_021480, intron 1 of 8)	intron (NM_021480, intron 1 of 8)	8571	NM_021480	58865	Mm.354229	NM_021480	ENSMUSG00000021953	Tdh	-	L-threonine dehydrogenase	protein-coding	0.005000	0.472637			
merged_common-484	chr2	77333934	77334134	+	-0.03024	NA	Intergenic	(TTTC)n|Simple_repeat|Simple_repeat	-53442	NM_175465	228071	Mm.27120	NM_175465	ENSMUSG00000042272	Sestd1	1500031J16Rik|A930010O20|Solo/Trio8	SEC14 and spectrin domains 1	protein-coding	0.000000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-1751	chr4	45012507	45012707	+	-0.03024	NA	promoter-TSS (NM_001163284)	promoter-TSS (NM_001163284)	-195	NM_001163283	230119	Mm.44222	NM_173399	ENSMUSG00000049657	Zbtb5	5930421I10|9430083K24Rik|AI646847|mKIAA0354	zinc finger and BTB domain containing 5	protein-coding	0.035000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-283	chr10	89117820	89118020	+	-0.03024	NA	intron (NR_102339, intron 2 of 26)	intron (NR_102339, intron 2 of 26)	139870	NM_001277188	320091	Mm.236464	NM_178773	ENSMUSG00000035189	Ano4	A330096O15Rik|Gm65|Tmem16d	anoctamin 4	protein-coding	0.005000	0.323383			
ePOU_nocontrol_ChIP_peaks_unique-129	chr1	156035727	156035927	+	-0.03024	NA	promoter-TSS (NM_001160180)	promoter-TSS (NM_001160180)	100	NM_001160180	240832	Mm.253335	NM_022329	ENSMUSG00000050565	Tor1aip2	1110020D10Rik|15kDa|A130072J07|AA103493|AW060462|AW610675|C77739|Ifrg15|Lull1	torsin A interacting protein 2	protein-coding	0.110000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-321	chr10	120208673	120208873	+	-0.03024	NA	promoter-TSS (NM_026617)	promoter-TSS (NM_026617)	-53	NM_026617	68212	Mm.157426	NM_026617	ENSMUSG00000020225	Tmbim4	0610007H07Rik|AU022431	transmembrane BAX inhibitor motif containing 4	protein-coding	0.085000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-262	chr10	76578811	76579011	+	-0.03024	NA	intron (NM_080845, intron 3 of 13)	intron (NM_080845, intron 3 of 13)	3263	NM_080845	14317	Mm.36278	NM_080845	ENSMUSG00000001155	Ftcd	-	formiminotransferase cyclodeaminase	protein-coding	0.000000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-974	chr16	22895605	22895805	+	-0.03024	NA	intron (NM_001276450, intron 4 of 6)	intron (NM_001276450, intron 4 of 6)	-1319	NR_110508	102632430	Mm.474375	NR_110508	ENSMUSG00000116831	Gm30505	-	predicted gene, 30505	ncRNA	0.015000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-450	chr11	88583539	88583739	+	-0.03024	NA	intron (NM_054043, intron 6 of 13)	intron (NM_054043, intron 6 of 13)	-35612	NR_131025	68397	Mm.426889	NR_131025		0610039H22Rik	-	RIKEN cDNA 0610039H22 gene	ncRNA	0.015000	0.577114			
ePOU_nocontrol_ChIP_peaks_unique-641	chr13	23492085	23492285	+	-0.03024	NA	Intergenic	Intergenic	-3328	NM_001289614	238555	Mm.129668	NM_175938	ENSMUSG00000053216	Btn2a2	Btn2|D030063K05	butyrophilin, subfamily 2, member A2	protein-coding	0.030000	0.457711			-63(ATTAACATATGAAAGA,-,0.00)
merged_common-473	chr2	59997871	59998071	+	-0.03024	NA	intron (NM_001001182, intron 4 of 35)	L1ME1|LINE|L1	100764	NM_001370942	667103	Mm.491257	NM_001370942		Gm13570	-	predicted gene 13570	protein-coding	0.010000	0.407960			-13(ATTTACATAAAAGTCC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1566	chr3	39857184	39857384	+	-0.03024	NA	Intergenic	Intergenic	665628	NR_040445	100040882	Mm.272869	NR_040445	ENSMUSG00000037884	1700017G19Rik	-	RIKEN cDNA 1700017G19 gene	ncRNA	0.010000	0.398010			16(CATTTGCAATGCAAAT,+,0.00),17(ATTTGCAATGCAAATC,-,0.00),54(TATTTTCTATGCAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2618	chr9	123999470	123999670	+	-0.03024	NA	Intergenic	Intergenic	-12855	NM_007718	12770	Mm.423532	NM_007718	ENSMUSG00000064039	Ccr1l1	Cmkbr1l1	chemokine (C-C motif) receptor 1-like 1	protein-coding	0.005000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-1127	chr17	71002353	71002553	+	-0.03024	NA	promoter-TSS (NM_026064)	promoter-TSS (NM_026064)	80	NM_026064	67268	Mm.489605	NM_026064	ENSMUSG00000024048	Myl12a	2900073G15Rik|AI838292|C80200	myosin, light chain 12A, regulatory, non-sarcomeric	protein-coding	0.060000	0.597015			
ePOU_nocontrol_ChIP_peaks_unique-1116	chr17	58932597	58932797	+	-0.03024	NA	intron (NM_027001, intron 6 of 12)	intron (NM_027001, intron 6 of 12)	58678	NM_027001	69239	Mm.246732	NM_027001	ENSMUSG00000024227	Pdzph1	2610034M16Rik|AV114557	PDZ and pleckstrin homology domains 1	protein-coding	0.000000	0.398010			
merged_common-44	chr1	128400488	128400688	+	-0.03024	NA	intron (NM_177445, intron 4 of 15)	intron (NM_177445, intron 4 of 15)	16828	NM_177445	226414	Mm.28693	NM_145507	ENSMUSG00000026356	Dars	5730439G15Rik	aspartyl-tRNA synthetase	protein-coding	0.005000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-1142	chr17	79895934	79896134	+	-0.03024	NA	promoter-TSS (NM_178050)	promoter-TSS (NM_178050)	89	NM_019717	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.125000	0.671642			
Oct4_nocontrol_ChIP_peaks_unique-431	chr6	32956840	32957040	+	-0.03024	NA	intron (NM_001355667, intron 4 of 8)	intron (NM_001355667, intron 4 of 8)	103320	NM_001355667	66075	Mm.21501	NM_025336	ENSMUSG00000053768	Chchd3	0610041L09Rik|1700039J09Rik|AW558177|Micos19	coiled-coil-helix-coiled-coil-helix domain containing 3	protein-coding	0.010000	0.338308			
ePOU_nocontrol_ChIP_peaks_unique-2516	chr9	49110666	49110866	+	-0.03024	NA	intron (NM_030709, intron 6 of 12)	intron (NM_030709, intron 6 of 12)	7987	NM_030709	80893	Mm.72799	NM_030709	ENSMUSG00000032268	Tmprss5	spinesin	transmembrane protease, serine 5 (spinesin)	protein-coding	0.010000	0.517413			
Oct4_nocontrol_ChIP_peaks_unique-169	chr14	23446481	23446681	+	-0.03024	NA	intron (NM_001253365, intron 16 of 29)	intron (NM_001253365, intron 16 of 29)	-352010	NR_033550	791307	Mm.364384	NR_033550	ENSMUSG00000068680	Gm10248	-	predicted gene 10248	ncRNA	0.015000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-644	chr13	25632637	25632837	+	-0.03024	NA	Intergenic	Intergenic	333579	NR_045062	100503530	Mm.86763	NR_045062	ENSMUSG00000086531	Gm11351	-	predicted gene 11351	ncRNA	0.000000	0.338308			
ePOU_nocontrol_ChIP_peaks_unique-12	chr1	26460126	26460326	+	-0.03024	NA	Intergenic	Intergenic	227234	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	0.000000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-2108	chr6	82773099	82773299	+	-0.03024	NA	intron (NM_013820, intron 1 of 17)	intron (NM_013820, intron 1 of 17)	1255	NM_013820	15277	Mm.255848	NM_013820	ENSMUSG00000000628	Hk2	AI642394|HKII	hexokinase 2	protein-coding	0.050000	0.472637			
Oct4_nocontrol_ChIP_peaks_unique-527	chr9	15279738	15279938	+	-0.03024	NA	promoter-TSS (NM_001364533)	promoter-TSS (NM_001364533)	68	NM_001364533	234959	Mm.44151	NM_144933	ENSMUSG00000031935	Med17	77kDa|C330002H14Rik|Crsp6|Trap80	mediator complex subunit 17	protein-coding	0.120000	0.676617			
merged_common-396	chr18	30121761	30121961	+	-0.03024	NA	Intergenic	Intergenic	-151004	NR_151699	225326	Mm.194127	NM_181414	ENSMUSG00000033628	Pik3c3	5330434F23Rik|Vps34	phosphatidylinositol 3-kinase catalytic subunit type 3	protein-coding	0.005000	0.472637			-54(CCTTAGTGATGCTAAT,+,0.00)
merged_common-856	chrUn_JH584304	67940	68140	+	-0.03024	NA	Intergenic	GSAT_MM|Satellite|Satellite	-8351	NR_003518	66776	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.025000	0.373134			
Oct4_nocontrol_ChIP_peaks_unique-541	chr9	94885685	94885885	+	-0.03024	NA	intron (NM_177909, intron 6 of 15)	intron (NM_177909, intron 6 of 15)	133956	NR_106116	102465763		NR_106116	ENSMUSG00000098251	Mir7656	Gm27614|mmu-mir-7656	microRNA 7656	ncRNA	0.015000	0.442786			11(CTTTTCACATGCACAT,+,0.00),69(CTATGCATGGGAAATG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-247	chr17	62330270	62330470	+	-0.03024	NA	Intergenic	Intergenic	550947	NM_207654	13640	Mm.7978	NM_010109	ENSMUSG00000048915	Efna5	AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS	ephrin A5	protein-coding	0.010000	0.388060	44(CATGCATAATGAAGG,+,0.00),44(CATGCATAATGAAGG,-,0.00)		
merged_common-482	chr2	74893354	74893554	+	-0.03024	NA	Intergenic	Intergenic	67642	NM_016804	53375	Mm.292613	NM_016804	ENSMUSG00000027099	Mtx2	1500012G02Rik	metaxin 2	protein-coding	0.015000	0.442786			
merged_common-784	chr8	53462789	53462989	+	-0.03024	NA	Intergenic	Intergenic	-48813	NM_001005847	11593	Mm.334535	NM_001005847	ENSMUSG00000031521	Aga	AW060726	aspartylglucosaminidase	protein-coding	0.005000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-2090	chr6	60995558	60995758	+	-0.03024	NA	Intergenic	Intergenic	51341	NM_001163507	70945	Mm.389770	NM_027613	ENSMUSG00000054641	Mmrn1	4921530G03Rik|Emilin4|Mmrn	multimerin 1	protein-coding	0.010000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-2141	chr6	113696956	113697156	+	-0.03024	NA	promoter-TSS (NM_001347356)	promoter-TSS (NM_001347356)	6	NM_001347356	381801	Mm.333322	NM_001033463	ENSMUSG00000056952	Tatdn2	AI646012|mKIAA0218	TatD DNase domain containing 2	protein-coding	0.140000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-994	chr16	36069854	36070054	+	-0.03024	NA	intron (NM_027342, intron 1 of 4)	intron (NM_027342, intron 1 of 4)	1607	NM_027342	70186	Mm.212991	NM_027342	ENSMUSG00000003955	Fam162a	2310056P07Rik|HGTD-P	family with sequence similarity 162, member A	protein-coding	0.015000	0.457711			
Oct4_nocontrol_ChIP_peaks_unique-382	chr4	53440214	53440414	+	-0.03024	NA	promoter-TSS (NM_001159633)	promoter-TSS (NM_001159633)	-99	NM_001159633	100434	Mm.482207	NM_133891	ENSMUSG00000028412	Slc44a1	2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92	solute carrier family 44, member 1	protein-coding	0.145000	0.810945			
ePOU_nocontrol_ChIP_peaks_unique-10	chr1	23169211	23169411	+	-0.03024	NA	Intergenic	Intergenic	-67058	NM_025746	66755	Mm.431297	NM_025746	ENSMUSG00000073730	4933415F23Rik	-	RIKEN cDNA 4933415F23 gene	protein-coding	0.010000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-1959	chr5	97200677	97200877	+	-0.03024	NA	Intergenic	Intergenic	-89181	NM_001359910	231474	Mm.332505	NM_198422	ENSMUSG00000055725	Paqr3	6330415A20Rik|AY424292|RKTG	progestin and adipoQ receptor family member III	protein-coding	0.010000	0.388060			
Oct4_nocontrol_ChIP_peaks_unique-56	chr10	40883443	40883643	+	-0.03024	NA	promoter-TSS (NM_027879)	promoter-TSS (NM_027879)	9	NM_031877	83767	Mm.41353	NM_031877	ENSMUSG00000019831	Wasf1	AI195380|AI838537|Scar|WAVE|WAVE-1	WAS protein family, member 1	protein-coding	0.055000	0.616915			
merged_common-388	chr18	13679178	13679378	+	-0.03024	NA	Intergenic	Intergenic	293455	NM_145492	225207	Mm.40325	NM_145492	ENSMUSG00000024420	Zfp521	B930086A16Rik|Evi3|Znf521	zinc finger protein 521	protein-coding	0.010000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-1833	chr4	119676512	119676712	+	-0.03024	NA	Intergenic	Intergenic	-17667	NM_008191	14916	Mm.278	NM_008191	ENSMUSG00000032978	Guca2b	AV066530|Gcap2|Ugn	guanylate cyclase activator 2b (retina)	protein-coding	0.020000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-384	chr11	49232975	49233175	+	-0.03024	NA	Intergenic	Intergenic	-11116	NM_001110148	17308	Mm.196933	NM_010794	ENSMUSG00000020346	Mgat1	Mgat-1	mannoside acetylglucosaminyltransferase 1	protein-coding	0.005000	0.363184			22(ACTTTCTTGTGAAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1283	chr19	26650930	26651130	+	-0.03024	NA	intron (NM_011416, intron 7 of 32)	intron (NM_011416, intron 7 of 32)	45870	NM_011416	67155	Mm.491146	NM_011416	ENSMUSG00000024921	Smarca2	2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2	protein-coding	0.010000	0.358209			-87(TTTTGAAAAAAAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1561	chr3	37639742	37639942	+	-0.03024	NA	promoter-TSS (NM_001305440)	promoter-TSS (NM_001305440)	-105	NM_001305442	24063	Mm.330986	NM_011896	ENSMUSG00000037211	Spry1	sprouty1|spry-1	sprouty RTK signaling antagonist 1	protein-coding	0.100000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-473	chr11	103697704	103697904	+	-0.03024	NA	promoter-TSS (NM_019650)	promoter-TSS (NM_019650)	80	NR_102388	399609	Mm.351922	NR_102388		C130046K22Rik	-	RIKEN cDNA C130046K22 gene	ncRNA	0.105000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-463	chr11	100545150	100545350	+	-0.03024	NA	promoter-TSS (NM_001363174)	promoter-TSS (NM_001363174)	-358	NM_028918	74407	Mm.31590	NM_028918	ENSMUSG00000006784	Ttc25	4933404O19Rik	tetratricopeptide repeat domain 25	protein-coding	0.020000	0.432836			-36(GCATTCTCATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-146	chr1	167314689	167314889	+	-0.03024	NA	intron (NM_001039483, intron 3 of 6)	Lx10|LINE|L1	6119	NM_001039483	68944	Mm.330045	NM_026881	ENSMUSG00000052428	Tmco1	1190006A08Rik|4930403O06Rik|AA109065|AU022572|ESTM39	transmembrane and coiled-coil domains 1	protein-coding	0.005000	0.328358		-33(TATGAATATGCATG,+,0.00),-33(TATGAATATGCATG,-,0.00),-23(CATGCATAAGTATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1154	chr17	90788239	90788439	+	-0.03024	NA	intron (NM_001346957, intron 3 of 18)	intron (NM_001346957, intron 3 of 18)	5137	NR_136930	102634634		NR_136930		Gm20491	-	enolase 1, alpha non-neuron pseudogene	pseudo	0.005000	0.348259			
merged_common-242	chr13	85289203	85289403	+	-0.03024	NA	5' UTR (NM_145452, exon 1 of 25)	5' UTR (NM_145452, exon 1 of 25)	183	NM_145452	218397	Mm.259653	NM_145452	ENSMUSG00000021549	Rasa1	Gap|RasGAP|Rasa	RAS p21 protein activator 1	protein-coding	0.115000	0.736318			
Oct4_nocontrol_ChIP_peaks_unique-50	chr10	23198419	23198619	+	-0.03024	NA	intron (NM_001347372, intron 3 of 18)	intron (NM_001347372, intron 3 of 18)	151371	NM_001347372	14051	Mm.332128	NM_010167	ENSMUSG00000010461	Eya4	B130023L16Rik	EYA transcriptional coactivator and phosphatase 4	protein-coding	0.010000	0.442786			36(AAATGCATGACAAAGA,-,0.00)
merged_common-98	chr10	40826424	40826624	+	-0.03497	NA	Intergenic	(CATA)n|Simple_repeat|Simple_repeat	56619	NM_027879	71713	Mm.46063	NM_027879	ENSMUSG00000038446	Cdc40	1200003H23Rik|EHB3|PRP17	cell division cycle 40	protein-coding	0.010000	0.393035		2(TATGCATATGTATA,+,0.00),2(TATGCATATGTATA,-,0.00)	
merged_common-867	chrX	170676613	170676813	+	-0.04507	NA	intron (NM_001199212, intron 6 of 7)	CpG-16011	4069	NM_001199212	107626	Mm.486144	NM_001199212	ENSMUSG00000093806	Asmt	Hiomt	acetylserotonin O-methyltransferase	protein-coding	0.035000	0.462687		-37(CATGCAAATTTATG,+,0.00),-37(CATGCAAATTTATG,-,0.00)	
merged_common-775	chr8	24327691	24327891	+	-0.04507	NA	Intergenic	Intergenic	111155	NM_026931	69068	Mm.25775	NM_026931	ENSMUSG00000056313	Tcim	1110065B09Rik|1810011O10Rik|AW121743|AW321058	transcriptional and immune response regulator	protein-coding	0.020000	0.462687			
merged_common-172	chr11	105068787	105068987	+	-0.07335	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-23332	NM_001081046	70894	Mm.87320	NM_001081046	ENSMUSG00000020690	Efcab3	4921510J17Rik	EF-hand calcium binding domain 3	protein-coding	0.010000	0.373134		22(CTTACATATGCATA,+,0.00)	
merged_common-230	chr13	38204925	38205125	+	-0.07335	NA	promoter-TSS (NM_026382)	promoter-TSS (NM_026382)	86	NM_026382	67797	Mm.250783	NM_026382	ENSMUSG00000021431	Snrnp48	1110050F08Rik|6530403A03Rik|C6orf151	small nuclear ribonucleoprotein 48 (U11/U12)	protein-coding	0.075000	0.676617			
merged_common-313	chr15	101266660	101266860	+	-0.07335	NA	promoter-TSS (NM_010444)	promoter-TSS (NM_010444)	-86	NM_010444	15370	Mm.119	NM_010444	ENSMUSG00000023034	Nr4a1	GFRP1|Gfrp|Hbr-1|Hbr1|Hmr|N10|NGFI-B|NGFIB|NP10|NUR77-1|NUR77-2|TIS1|TR3|nur77	nuclear receptor subfamily 4, group A, member 1	protein-coding	0.125000	0.766169			
merged_common-399	chr18	34331029	34331229	+	-0.07335	NA	promoter-TSS (NM_025527)	promoter-TSS (NM_025527)	-16	NM_025527	66384	Mm.29452	NM_025527	ENSMUSG00000014504	Srp19	2310020D23Rik	signal recognition particle 19	protein-coding	0.115000	0.666667			
merged_common-323	chr16	23030963	23031163	+	-0.07335	NA	Intergenic	RLTR13D2|LTR|ERVK	-1962	NM_201375	385643	Mm.440414	NM_201375	ENSMUSG00000060459	Kng2	-	kininogen 2	protein-coding	0.000000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-363	chr11	32442671	32442871	+	-0.07335	NA	Intergenic	L1MB8|LINE|L1	-12599	NM_001361561	327900	Mm.260956	NM_173784	ENSMUSG00000044949	Ubtd2	4930571L24|9630054F20Rik|AI645720	ubiquitin domain containing 2	protein-coding	0.010000	0.427861	22(CATGCATAAGTTATT,+,0.00),22(CATGCATAAGTTATT,-,0.00)	12(TATGAATATTCATG,+,0.00),12(TATGAATATTCATG,-,0.00)	
merged_common-818	chr9	18292109	18292309	+	-0.07335	NA	promoter-TSS (NM_025844)	promoter-TSS (NM_025844)	-58	NM_025844	66917	Mm.103534	NM_025844	ENSMUSG00000001774	Chordc1	1110001O09Rik|AA409036|Chp-1|morgana	cysteine and histidine-rich domain (CHORD)-containing, zinc-binding protein 1	protein-coding	0.100000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-1553	chr3	31004919	31005119	+	-0.07335	NA	intron (NM_008857, intron 1 of 17)	L1_Rod|LINE|L1	9248	NM_008857	18759	Mm.291554	NM_008857	ENSMUSG00000037643	Prkci	2310021H13Rik|AI427505|PKClambda|Pkci|Pkcl|Prkcl|aPKClambda|mKIAA4165	protein kinase C, iota	protein-coding	0.010000	0.452736			44(TTATTGTCATTTTGAT,+,0.00)
merged_common-205	chr12	53027174	53027374	+	-0.07335	NA	intron (NM_198111, intron 9 of 13)	intron (NM_198111, intron 9 of 13)	-221158	NM_001370962	27386	Mm.247044	NM_013780	ENSMUSG00000021010	Npas3	4930423H22Rik|bHLHe12	neuronal PAS domain protein 3	protein-coding	0.005000	0.293532			
Oct4_nocontrol_ChIP_peaks_unique-455	chr6	134829946	134830146	+	-0.07335	NA	promoter-TSS (NM_177687)	promoter-TSS (NM_177687)	-153	NM_177687	232430	Mm.267010	NM_177687	ENSMUSG00000032652	Crebl2	AI046348|B230205M03	cAMP responsive element binding protein-like 2	protein-coding	0.060000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-1267	chr19	10688660	10688860	+	-0.07335	NA	promoter-TSS (NM_001361963)	promoter-TSS (NM_001361963)	25	NM_001361963	107305	Mm.19091	NM_181403	ENSMUSG00000048832	Vps37c	5730409F24Rik|AU042646	vacuolar protein sorting 37C	protein-coding	0.110000	0.726368			
Oct4_nocontrol_ChIP_peaks_unique-210	chr15	59174247	59174447	+	-0.07335	NA	Intergenic	Intergenic	-92321	NM_144800	211401	Mm.215481	NM_144800	ENSMUSG00000022353	Mtss1	2310003N14Rik|BC024131|D130001D01Rik|Mim|mKIAA0429	MTSS I-BAR domain containing 1	protein-coding	0.010000	0.462687			38(GCATTGTTATGCAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-158	chr13	101051482	101051682	+	-0.07335	NA	Intergenic	L1MA4|LINE|L1	-180545	NR_046158	328324	Mm.402274	NR_046158	ENSMUSG00000114590	5930438M14Rik	5930438M14	RIKEN cDNA 5930438M14 gene	ncRNA	0.000000	0.328358			-30(CCATTTTCCTGCAAAT,+,0.00)
merged_common-387	chr18	13397335	13397535	+	-0.07335	NA	Intergenic	Intergenic	390445	NM_153087	225192	Mm.207073	NM_153087	ENSMUSG00000037346	Hrh4	AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R	histamine receptor H4	protein-coding	0.015000	0.477612			-22(ATTTCCATAACAAAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1362	chr2	30982026	30982226	+	-0.07335	NA	promoter-TSS (NM_028846)	promoter-TSS (NM_028846)	-153	NM_028846	74270	Mm.346654	NM_028846	ENSMUSG00000026854	Usp20	1700055M05Rik|AI467231|Vdu2	ubiquitin specific peptidase 20	protein-coding	0.100000	0.661692			
merged_common-760	chr7	121687890	121688090	+	-0.07335	NA	intron (NM_001033173, intron 1 of 15)	L1VL4|LINE|L1	19452	NM_001033173	76179	Mm.122538	NM_001033173	ENSMUSG00000063317	Usp31	6330567E21Rik|mKIAA1203	ubiquitin specific peptidase 31	protein-coding	0.005000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-2321	chr7	134775734	134775934	+	-0.07335	NA	intron (NM_001033420, intron 18 of 51)	intron (NM_001033420, intron 18 of 51)	105147	NM_001033420	330662	Mm.436572	NM_001033420	ENSMUSG00000058325	Dock1	9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo	dedicator of cytokinesis 1	protein-coding	0.015000	0.477612			
merged_common-741	chr7	75870661	75870861	+	-0.07335	NA	intron (NM_029652, intron 2 of 2)	intron (NM_029652, intron 2 of 2)	22423	NM_182782	207952	Mm.206223	NM_029652	ENSMUSG00000055652	Klhl25	2810402K13Rik|BC027373|Enc-1	kelch-like 25	protein-coding	0.025000	0.567164			
ePOU_nocontrol_ChIP_peaks_unique-1647	chr3	97610067	97610267	+	-0.07335	NA	promoter-TSS (NM_026539)	promoter-TSS (NM_026539)	23	NM_026539	68058	Mm.31761	NM_026539	ENSMUSG00000028089	Chd1l	4432404A22Rik|Alc1|Snf2p	chromodomain helicase DNA binding protein 1-like	protein-coding	0.150000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-2435	chr8	91355890	91356090	+	-0.07335	NA	intron (NM_011936, intron 1 of 8)	intron (NM_011936, intron 1 of 8)	42465	NM_011936	26383	Mm.4375	NM_011936	ENSMUSG00000055932	Fto	AW743446|mKIAA1752	fat mass and obesity associated	protein-coding	0.025000	0.407960	68(AATGAATAATTCAGC,+,0.00),68(AATGAATAATTCAGC,-,0.00)		
merged_common-287	chr15	12147465	12147665	+	-0.07335	NA	intron (NM_001358823, intron 6 of 18)	intron (NM_001358823, intron 6 of 18)	-23927	NR_035443	100316684		NR_035443	ENSMUSG00000084592	Mir1898	Mirn1898|mmu-mir-1898	microRNA 1898	ncRNA	0.005000	0.407960			-1(ATTTACATAAGAATTG,-,0.00)
merged_common-381	chr17	83831026	83831226	+	-0.07335	NA	TTS (NM_025325)	TTS (NM_025325)	15664	NM_025325	107766	Mm.30100	NM_025325	ENSMUSG00000000673	Haao	0610007K21Rik|0610012J07Rik|3-HAO|3-HAOxase|3HAO	3-hydroxyanthranilate 3,4-dioxygenase	protein-coding	0.020000	0.427861			-78(ATTAGCATAACATAAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2358	chr8	33507973	33508173	+	-0.07335	NA	Intergenic	RLTR22_Mus|LTR|ERVK	23762	NR_033589	628431	Mm.376526	NR_033589		Hmgb1-rs17	Hmg1-rs17	high mobility group box 1, related sequence 17	pseudo	0.005000	0.358209		-41(AATGAAAATGTATG,-,0.00)	
merged_common-585	chr4	55530345	55530545	+	-0.07335	NA	exon (NM_010637, exon 3 of 5)	exon (NM_010637, exon 3 of 5)	2030	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.065000	0.641791			
merged_common-836	chr9	72798263	72798463	+	-0.07335	NA	Intergenic	Intergenic	-8911	NM_175485	235472	Mm.31696	NM_175485	ENSMUSG00000036030	Prtg	A230098A12Rik|Igdcc5	protogenin	protein-coding	0.000000	0.288557		26(CATACATATGTATA,+,0.00),26(CATACATATGTATA,-,0.00),38(TATACATATACATG,-,0.00)	-53(TGATTCTAATTCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1494	chr2	148264206	148264406	+	-0.07335	NA	Intergenic	Intergenic	-131071	NM_009219	20608	Mm.35324	NM_009219	ENSMUSG00000037014	Sstr4	Smstr4|sst4	somatostatin receptor 4	protein-coding	0.005000	0.402985			
merged_common-614	chr4	133277827	133278027	+	-0.07335	NA	promoter-TSS (NM_025667)	promoter-TSS (NM_025667)	-137	NM_025667	52174	Mm.244748	NM_025667	ENSMUSG00000028857	Tmem222	5730406H10Rik|AA409341|D4Ertd196e	transmembrane protein 222	protein-coding	0.055000	0.547264			
merged_common-33	chr1	88774248	88774448	+	-0.07335	NA	Intergenic	Intergenic	19458	NR_040493	78650	Mm.243767	NR_040493	ENSMUSG00000097398	Platr5	2410088K16Rik	pluripotency associated transcript 5	ncRNA	0.040000	0.502488			
merged_common-103	chr10	67573813	67574013	+	-0.07335	NA	Intergenic	Intergenic	-1954	NR_155444	105245193	Mm.72938	NR_155444		4930563J15Rik	-	RIKEN cDNA 4930563J15 gene	ncRNA	0.000000	0.323383			
merged_common-358	chr17	29584658	29584858	+	-0.07335	NA	intron (NR_045447, intron 3 of 3)	intron (NR_045447, intron 3 of 3)	-10780	NR_106127	102465769		NR_106127	ENSMUSG00000098764	Mir7667	Gm27756|mmu-mir-7667	microRNA 7667	ncRNA	0.000000	0.402985			
merged_common-641	chr5	65576001	65576201	+	-0.07335	NA	intron (NR_144566, intron 2 of 5)	intron (NR_144566, intron 2 of 5)	38856	NM_016786	53323	Mm.319512	NM_016786	ENSMUSG00000029203	Ube2k	AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig	ubiquitin-conjugating enzyme E2K	protein-coding	0.005000	0.407960			67(TCTTTTTCATGTAACT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-546	chr12	52558829	52559029	+	-0.07335	NA	intron (NM_009706, intron 3 of 5)	intron (NM_009706, intron 3 of 5)	42852	NM_009706	11855	Mm.35059	NM_009706	ENSMUSG00000035133	Arhgap5	p190-B|p190B	Rho GTPase activating protein 5	protein-coding	0.000000	0.328358			-49(CCTTTGTTTAGGAAAT,+,0.00),44(ATTTTAAAGAGAGAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-730	chr13	109647967	109648167	+	-0.07335	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-255742	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.020000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-2474	chr8	126971023	126971223	+	-0.07335	NA	promoter-TSS (NM_172762)	promoter-TSS (NM_172762)	-74	NM_172762	52202	Mm.28199	NM_172762	ENSMUSG00000033931	Rbm34	4930547K05Rik|6330444B11|D8Ertd233e	RNA binding motif protein 34	protein-coding	0.065000	0.621891			
merged_common-84	chr10	20379066	20379266	+	-0.07335	NA	Intergenic	Intergenic	31347	NM_027930	71804	Mm.262151	NM_027930	ENSMUSG00000019992	Mtfr2	2610016C23Rik|4933412C16Rik|Dufd1|Fam54a	mitochondrial fission regulator 2	protein-coding	0.015000	0.542289			-75(CCATTCTCATGGATAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2405	chr8	71725714	71725914	+	-0.07335	NA	promoter-TSS (NM_028715)	promoter-TSS (NM_028715)	-133	NM_028715	74015	Mm.22025	NM_028715	ENSMUSG00000070000	Fcho1	3322402E17Rik|N28152	FCH domain only 1	protein-coding	0.025000	0.512438			
merged_common-431	chr19	32884424	32884624	+	-0.07335	NA	Intergenic	(CAAAA)n|Simple_repeat|Simple_repeat	126947	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.005000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-1650	chr3	101066445	101066645	+	-0.07335	NA	intron (NM_011197, intron 4 of 8)	intron (NM_011197, intron 4 of 8)	-36992	NM_001167906	630146	Mm.190915	NM_001099332	ENSMUSG00000086564	Cd101	EWI-101|Gm1016|Gm734|Igsf2	CD101 antigen	protein-coding	0.000000	0.447761			
merged_common-62	chr1	166002669	166002869	+	-0.07335	NA	promoter-TSS (NM_198932)	promoter-TSS (NM_198932)	-135	NM_198932	18986	Mm.245261	NM_011137	ENSMUSG00000026565	Pou2f1	2810482H01Rik|NF-A1|Oct-1|Oct1|Otf-1|Otf1	POU domain, class 2, transcription factor 1	protein-coding	0.125000	0.791045			
merged_common-61	chr1	165642051	165642251	+	-0.07335	NA	Intergenic	Intergenic	-7610	NM_001001880	68481	Mm.46438	NM_001001880	ENSMUSG00000026566	Mpzl1	1110007A10Rik|PZR	myelin protein zero-like 1	protein-coding	0.020000	0.412935			
Oct4_nocontrol_ChIP_peaks_unique-332	chr2	162739488	162739688	+	-0.07335	NA	Intergenic	L1ME4a|LINE|L1	78425	NR_033569	77288	Mm.376571	NR_033569		9430021M05Rik	-	RIKEN cDNA 9430021M05 gene	ncRNA	0.005000	0.338308		14(TATGAATATATATA,+,0.00),14(TATGAATATATATA,-,0.00),22(TATATATATGCATA,+,0.00),28(TATGCATATACATA,+,0.00),28(TATGCATATACATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-160	chr1	177347028	177347228	+	-0.07335	NA	Intergenic	Intergenic	-95223	NM_001355098	30928	Mm.330700	NM_013915	ENSMUSG00000063659	Zbtb18	RP58|Zfp238|Znf238.|zfp-238	zinc finger and BTB domain containing 18	protein-coding	0.015000	0.452736			
merged_common-349	chr17	10604116	10604316	+	-0.07335	NA	intron (NM_027032, intron 2 of 4)	intron (NM_027032, intron 2 of 4)	148000	NR_077239	319750	Mm.383485	NR_077237	ENSMUSG00000089633	A230009B12Rik	-	RIKEN cDNA A230009B12 gene	ncRNA	0.015000	0.378109			47(TTTTTCTTTTGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2480	chr9	9269339	9269539	+	-0.07335	NA	Intergenic	Intergenic	-30426	NM_027823	71544	Mm.334955	NM_027823	ENSMUSG00000050730	Arhgap42	9030420J04Rik|BE136619	Rho GTPase activating protein 42	protein-coding	0.005000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-1560	chr3	36385552	36385752	+	-0.07335	NA	Intergenic	Intergenic	89872	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.010000	0.333333			
Oct4_nocontrol_ChIP_peaks_unique-556	chrX	85077767	85077967	+	-0.07335	NA	intron (NM_001314035, intron 2 of 15)	MER102b|DNA|hAT-Charlie	29572	NM_001314035	13405	Mm.275608	NM_007868	ENSMUSG00000045103	Dmd	DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke	dystrophin, muscular dystrophy	protein-coding	0.005000	0.407960			34(AAATATTTATGTAAAT,+,0.00)
merged_common-203	chr12	51971409	51971609	+	-0.07335	NA	promoter-TSS (NM_177171)	promoter-TSS (NM_177171)	-188	NM_177171	320487	Mm.131941	NM_177171	ENSMUSG00000035181	Heatr5a	C230081H03Rik|D930036F22Rik|mKIAA1316	HEAT repeat containing 5A	protein-coding	0.045000	0.542289			
Oct4_nocontrol_ChIP_peaks_unique-167	chr14	19719052	19719252	+	-0.07335	NA	Intergenic	Intergenic	-32105	NM_008695	18074	Mm.20348	NM_008695	ENSMUSG00000021806	Nid2	AW547149|Ly111|NID-2|entactin-2|nidogen-2	nidogen 2	protein-coding	0.005000	0.407960		41(CATACATATTCAGA,+,0.00),41(CATACATATTCAGA,-,0.00)	
merged_common-210	chr12	81637047	81637247	+	-0.07335	NA	intron (NM_001033149, intron 1 of 2)	MER45B|DNA|hAT-Tip100	5898	NM_001033149	69480	Mm.130002	NM_001033149	ENSMUSG00000042734	Ttc9	-	tetratricopeptide repeat domain 9	protein-coding	0.000000	0.313433	-2(CATACATAATGTATT,+,0.00),-2(CATACATAATGTATT,-,0.00),69(TATGCATATTTTATA,-,0.00)		-80(TTTTAAATGAGAATAT,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-504	chr8	64123852	64124052	+	-0.07335	NA	intron (NM_009390, intron 2 of 20)	intron (NM_009390, intron 2 of 20)	82056	NM_009390	21892	Mm.418367	NM_009390	ENSMUSG00000053626	Tll1	Tll|Tll-1|b2b2476Clo	tolloid-like	protein-coding	0.005000	0.323383			13(CTTTGCATAATCATAC,-,0.00)
merged_common-297	chr15	58934625	58934825	+	-0.07335	NA	promoter-TSS (NM_175151)	promoter-TSS (NM_175151)	924	NM_001364808	66218	Mm.322294	NM_023172	ENSMUSG00000022354	Ndufb9	1190008J14Rik|CI-B22	NADH:ubiquinone oxidoreductase subunit B9	protein-coding	0.005000	0.393035			
merged_common-264	chr14	63022423	63022623	+	-0.07335	NA	Intergenic	Intergenic	10752	NM_001039121	654458	Mm.390737	NM_001039121	ENSMUSG00000075572	Defb43	BD-43|EG654458|mBD-43	defensin beta 43	protein-coding	0.015000	0.318408			
ePOU_nocontrol_ChIP_peaks_unique-2222	chr7	65346870	65347070	+	-0.07335	NA	intron (NM_001163574, intron 2 of 26)	MER33|DNA|hAT-Charlie	24274	NM_001163574	21872	Mm.4342	NM_009386	ENSMUSG00000030516	Tjp1	ZO1	tight junction protein 1	protein-coding	0.010000	0.383085			-40(CTTTACATGACTATGA,-,0.00)
merged_common-435	chr19	36103113	36103313	+	-0.07335	NA	intron (NM_019428, intron 10 of 10)	intron (NM_019428, intron 10 of 10)	16631	NM_013468	107765	Mm.10279	NM_013468	ENSMUSG00000024803	Ankrd1	Alrp|CARP|Crap|MARP1	ankyrin repeat domain 1 (cardiac muscle)	protein-coding	0.010000	0.522388			
merged_common-25	chr1	78119991	78120191	+	-0.07335	NA	intron (NM_001159520, intron 7 of 8)	intron (NM_001159520, intron 7 of 8)	77045	NM_001159520	18505	Mm.1371	NM_008781	ENSMUSG00000004872	Pax3	Pax-3|Sp|Splchl2|splotch	paired box 3	protein-coding	0.010000	0.407960			-34(TCATTGTCATGTAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-569	chr12	71725841	71726041	+	-0.07335	NA	Intergenic	Intergenic	-105127	NM_172464	208846	Mm.87417	NM_026102	ENSMUSG00000034574	Daam1	-	dishevelled associated activator of morphogenesis 1	protein-coding	0.015000	0.398010			
merged_common-478	chr2	70661492	70661692	+	-0.07335	NA	promoter-TSS (NR_027343)	promoter-TSS (NR_027343)	83	NM_027352	70231	Mm.271950	NM_027352	ENSMUSG00000014959	Gorasp2	0610011A07Rik|2410043M02Rik|5730520M13Rik|9430094F20Rik|AW552058|GOLPH2|GRASP55|GRS2|p59	golgi reassembly stacking protein 2	protein-coding	0.160000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-237	chr10	56076239	56076439	+	-0.07335	NA	intron (NM_001033385, intron 25 of 32)	intron (NM_001033385, intron 25 of 32)	-30578	NM_001163833	73390	Mm.181475	NM_133751	ENSMUSG00000047669	Msl3l2	1700060H10Rik	MSL3 like 2	protein-coding	0.000000	0.288557	31(AATGCATAATTCAAA,+,0.00),31(AATGCATAATTCAAA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1950	chr5	84024364	84024564	+	-0.07335	NA	Intergenic	Intergenic	392918	NM_007937	13839	Mm.137991	NM_007937	ENSMUSG00000029245	Epha5	AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk	Eph receptor A5	protein-coding	0.005000	0.348259			-83(ATATGAATCACAAAAT,-,0.00),-69(ATCATCATGACAAATG,-,0.00),-15(ATATGCATAAAAGTAT,-,0.00)
merged_common-662	chr5	116453257	116453457	+	-0.07335	NA	intron (NM_026886, intron 9 of 12)	intron (NM_026886, intron 9 of 12)	14635	NR_015595	76798	Mm.444322	NR_015595	ENSMUSG00000086219	Srrm4os	2410137F16Rik	serine/arginine repetitive matrix 4, opposite strand	ncRNA	0.015000	0.462687		-88(TATACATATGTATC,+,0.00),-88(TATACATATGTATC,-,0.00)	-54(GGACTCTCTTGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-859	chr15	38078902	38079102	+	-0.07335	NA	promoter-TSS (NM_001112721)	promoter-TSS (NM_001112721)	-148	NM_001081359	70790	Mm.476840	NM_027553	ENSMUSG00000037487	Ubr5	Edd|Edd1	ubiquitin protein ligase E3 component n-recognin 5	protein-coding	0.155000	0.771144			
ePOU_nocontrol_ChIP_peaks_unique-1584	chr3	57732723	57732923	+	-0.07335	NA	Intergenic	MLTR25A|LTR|ERVK	-3234	NM_011883	24017	Mm.274360	NM_011883	ENSMUSG00000036503	Rnf13	2010001H16Rik|Rzf	ring finger protein 13	protein-coding	0.010000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-1061	chr17	14693270	14693470	+	-0.07335	NA	intron (NM_011581, intron 1 of 21)	intron (NM_011581, intron 1 of 21)	892	NM_011581	21826	Mm.26688	NM_011581	ENSMUSG00000023885	Thbs2	TSP2|Thbs-2	thrombospondin 2	protein-coding	0.010000	0.507463			46(TCTTTTGTATGCAAAT,+,0.00)
merged_common-476	chr2	68381511	68381711	+	-0.07335	NA	intron (NM_016866, intron 5 of 17)	intron (NM_016866, intron 5 of 17)	90370	NM_016866	53416	Mm.198414	NM_016866	ENSMUSG00000027030	Stk39	AW227544|AW556857|DCHT|RF005|Rnl5|SPAK	serine/threonine kinase 39	protein-coding	0.000000	0.348259		-12(TATAATTATTCATA,-,0.00)	7(ATTTACATGATAATGA,-,0.00)
merged_common-75	chr1	185053956	185054156	+	-0.07335	NA	Intergenic	Intergenic	-54507	NM_145515	226778	Mm.7445	NM_145515	ENSMUSG00000026620	Mark1	AW491150|B930025N23Rik|Emk3|Par-1c|mKIAA1477|mPar-1c	MAP/microtubule affinity regulating kinase 1	protein-coding	0.020000	0.388060			-71(ATTTGCATGATAAATA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-63	chr10	78574135	78574335	+	-0.07335	NA	promoter-TSS (NM_001359301)	promoter-TSS (NM_001359301)	-265	NM_173751	216136	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.060000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-60	chr1	72057927	72058127	+	-0.07335	NA	Intergenic	Intergenic	-52832	NR_040454	71134	Mm.370574	NR_040454	ENSMUSG00000101848	4933417E11Rik	-	RIKEN cDNA 4933417E11 gene	ncRNA	0.010000	0.407960			
merged_common-487	chr2	96709711	96709911	+	-0.07335	NA	intron (NM_001363047, intron 2 of 8)	intron (NM_001363047, intron 2 of 8)	391642	NM_001289742	241568	Mm.241682	NM_178725	ENSMUSG00000050587	Lrrc4c	6430556C10Rik|NGL-1	leucine rich repeat containing 4C	protein-coding	0.015000	0.383085			-43(CTTTTCATGACAATGC,-,0.00)
merged_common-395	chr18	28976890	28977090	+	-0.07895	NA	intron (NR_045398, intron 4 of 4)	intron (NR_045398, intron 4 of 4)	104774	NR_155537	102637039	Mm.50107	NR_155537	ENSMUSG00000117473	Gm33948	-	predicted gene, 33948	ncRNA	0.000000	0.363184		-30(TATGAATATGCACA,+,0.00),-30(TATGAATATGCACA,-,0.00)	-64(TCCTTTTCTTTCAAAT,+,0.00)
merged_common-752	chr7	98616190	98616390	+	-0.07895	NA	intron (NM_172280, intron 11 of 19)	ID4|SINE|ID	40279	NM_172280	233545	Mm.387819	NM_172280	ENSMUSG00000035401	Emsy	2210018M11Rik|2310016L09Rik|AU019521|AU019557	EMSY, BRCA2-interacting transcriptional repressor	protein-coding	0.005000	0.393035			
merged_common-533	chr3	57157516	57157716	+	-0.09099	NA	Intergenic	Intergenic	144372	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.000000	0.343284	-23(AATGCATAAATCATT,+,0.00),-23(AATGCATAAATCATT,-,0.00)		
merged_common-804	chr8	104093402	104093602	+	-0.10854	NA	intron (NR_131138, intron 1 of 2)	L1MB7|LINE|L1	-8123	NM_009868	12562	Mm.21767	NM_009868	ENSMUSG00000031871	Cdh5	7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec	cadherin 5	protein-coding	0.020000	0.422886		16(TATGCATATTCATA,+,0.00),16(TATGCATATTCATA,-,0.00)	27(ATATACATACGAAAAG,-,0.00),60(ATCAAAATCACAATGA,-,0.00)
merged_common-530	chr3	52070634	52070834	+	-0.10854	NA	intron (NM_001004176, intron 1 of 4)	intron (NM_001004176, intron 1 of 4)	34272	NM_001004176	433586	Mm.234972	NM_001004176	ENSMUSG00000061143	Maml3	AV234550|BC049812|Mam-2|mKIAA1816	mastermind like transcriptional coactivator 3	protein-coding	0.015000	0.353234			29(ATTTCCCTAAGAAAAC,-,0.00)
merged_common-841	chr9	84253557	84253757	+	-0.10857	NA	Intergenic	Intergenic	304876	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.000000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-111	chr1	134901030	134901230	+	-0.10857	NA	intron (NM_001368829, intron 1 of 22)	intron (NM_001368829, intron 1 of 22)	45169	NR_162775	114482779		NR_162775		Mir5104b	mmu-mir-5104b	microRNA mir-5104b	ncRNA	0.005000	0.343284			
merged_common-276	chr14	93701451	93701651	+	-0.10857	NA	intron (NM_001081377, intron 2 of 4)	intron (NM_001081377, intron 2 of 4)	189118	NM_001271800	211712	Mm.37126	NM_001081377	ENSMUSG00000055421	Pcdh9	-	protocadherin 9	protein-coding	0.025000	0.437811			
merged_common-458	chr2	26862683	26862883	+	-0.10857	NA	intron (NM_030718, intron 1 of 5)	intron (NM_030718, intron 1 of 5)	2212	NM_030718	80908	Mm.160386	NM_030718	ENSMUSG00000015787	Abo	NAGAT	ABO blood group (transferase A, alpha 1-3-N-acetylgalactosaminyltransferase, transferase B, alpha 1-3-galactosyltransferase)	protein-coding	0.000000	0.328358			-52(AATTTGTCATTGAGAT,+,0.00)
merged_common-124	chr10	127731685	127731885	+	-0.10857	NA	TTS (NM_001199971)	TTS (NM_001199971)	6393	NM_009312	21334	Mm.2374	NM_009312	ENSMUSG00000025400	Tac2	PPT-B|Tac3	tachykinin 2	protein-coding	0.010000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-357	chr11	28423157	28423357	+	-0.10857	NA	intron (NM_001346759, intron 3 of 5)	intron (NM_001346759, intron 3 of 5)	161067	NM_001166661	216613	Mm.93759	NM_181577	ENSMUSG00000032878	Ccdc85a	-	coiled-coil domain containing 85A	protein-coding	0.005000	0.308458	-66(GATGCATAATTTAGT,-,0.00)		-73(TCATTGTGATGCATAA,+,0.00)
merged_common-54	chr1	151363377	151363577	+	-0.10857	NA	3' UTR (NM_001359262, exon 14 of 14)	3' UTR (NM_001359262, exon 14 of 14)	18979	NM_001039511	117198	Mm.33764	NM_028582	ENSMUSG00000023150	Ivns1abp	1190004M08Rik|1700126I16Rik|AA960440|HSPC068|ND1|NS-1|NS1-BP|Nd1-L|Nd1-S|mKIAA0850	influenza virus NS1A binding protein	protein-coding	0.005000	0.378109			
merged_common-537	chr3	63051782	63051982	+	-0.10857	NA	Intergenic	RLTR13D2|LTR|ERVK	-243329	NM_001357335	17380	Mm.296022	NM_008604	ENSMUSG00000027820	Mme	6030454K05Rik|C85356|CALLA|CD10|NEP|SFE	membrane metallo endopeptidase	protein-coding	0.000000	0.432836	-12(TTTGCATTATTCATG,+,0.00),-12(TTTGCATTATTCATG,-,0.00)		
merged_common-111	chr10	86774131	86774331	+	-0.10857	NA	intron (NM_001003910, intron 14 of 15)	RLTR22_Mus|LTR|ERVK	-4774	NM_175331	103466	Mm.200446	NM_175331	ENSMUSG00000054027	Nt5dc3	AU040402|AW540062|C630002B14Rik|TU12B1-TY	5'-nucleotidase domain containing 3	protein-coding	0.000000	0.338308		71(AATGAAAATGTATA,+,0.00)	66(GTTTGAATGAAAATGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2619	chr9	124148627	124148827	+	-0.10857	NA	Intergenic	Intergenic	27184	NM_009917	12774	Mm.14302	NM_009917	ENSMUSG00000079227	Ccr5	AM4-7|CD195|Cmkbr5	chemokine (C-C motif) receptor 5	protein-coding	0.000000	0.388060			
merged_common-726	chr7	19228160	19228360	+	-0.10857	NA	promoter-TSS (NM_207525)	promoter-TSS (NM_207525)	-129	NM_207525	403187	Mm.239583	NM_207525	ENSMUSG00000052214	Opa3	D630048P19Rik|Gm1425|Gm472	optic atrophy 3	protein-coding	0.135000	0.666667			
merged_common-35	chr1	91239676	91239876	+	-0.10857	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-10528	NM_001355762	67921	Mm.337238	NM_026454	ENSMUSG00000034343	Ube2f	2510010F15Rik|AI851109	ubiquitin-conjugating enzyme E2F (putative)	protein-coding	0.005000	0.303483			
merged_common-140	chr11	33403673	33403873	+	-0.10857	NA	intron (NM_001362875, intron 14 of 28)	intron (NM_001362875, intron 14 of 28)	109980	NM_023146	66011	Mm.383775	NM_023146	ENSMUSG00000040594	Ranbp17	-	RAN binding protein 17	protein-coding	0.000000	0.338308			
merged_common-3	chr1	16602044	16602244	+	-0.10857	NA	intron (NM_025773, intron 2 of 5)	intron (NM_025773, intron 2 of 5)	17147	NM_001271016	66799	Mm.122430	NM_025773	ENSMUSG00000025939	Ube2w	6130401J04Rik	ubiquitin-conjugating enzyme E2W (putative)	protein-coding	0.000000	0.253731		-27(AATGAATATGCAGA,+,0.00),-27(AATGAATATGCAGA,-,0.00)	-71(AATTACATTACAATAA,-,0.00)
merged_common-708	chr6	89114979	89115179	+	-0.10857	NA	Intergenic	B3A|SINE|B2	14061	NR_134979	232217	Mm.281744	NM_175017	ENSMUSG00000055403	4933427D06Rik	-	RIKEN cDNA 4933427D06 gene	ncRNA	0.005000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-1694	chr3	133091628	133091828	+	-0.10857	NA	promoter-TSS (NM_027927)	promoter-TSS (NM_027927)	97	NM_026231	67553	Mm.304899	NM_026231	ENSMUSG00000028018	Gstcd	4933434L15Rik	glutathione S-transferase, C-terminal domain containing	protein-coding	0.110000	0.676617			
merged_common-854	chrUn_JH584304	32896	33096	+	-0.10857	NA	Intergenic	MTA_Mm|LTR|ERVL-MaLR	26693	NR_003518	66776	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.000000	0.522388			
Oct4_nocontrol_ChIP_peaks_unique-238	chr16	85319147	85319347	+	-0.10857	NA	Intergenic	Intergenic	-145540	NM_001198823	11820	Mm.277585	NM_007471	ENSMUSG00000022892	App	Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp	amyloid beta (A4) precursor protein	protein-coding	0.000000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-987	chr16	30835826	30836026	+	-0.10857	NA	Intergenic	MER77|LTR|ERVL	236203	NM_177632	224093	Mm.28244	NM_177632	ENSMUSG00000046546	Fam43a	Tuf1	family with sequence similarity 43, member A	protein-coding	0.010000	0.432836			10(GCTTTGTTATGCATAA,+,0.00)
merged_common-247	chr13	104162016	104162216	+	-0.10857	NA	intron (NM_001093760, intron 4 of 11)	ID_B1|SINE|B4	16343	NM_001365338	113002583	Mm.272541	NM_001365338		Shld3	Rinn1	shieldin complex subunit 3	protein-coding	0.000000	0.432836			
merged_common-289	chr15	25754045	25754245	+	-0.10857	NA	intron (NM_001353142, intron 1 of 20)	intron (NM_001353142, intron 1 of 20)	939	NM_001353142	17909	Mm.60590	NM_019472	ENSMUSG00000022272	Myo10	AW048724|D15Ertd600e|mKIAA0799|myosin-X	myosin X	protein-coding	0.000000	0.383085			
merged_common-832	chr9	59656288	59656488	+	-0.10857	NA	promoter-TSS (NM_001253883)	promoter-TSS (NM_001253883)	20	NM_001253883	18746	Mm.326167	NM_011099	ENSMUSG00000032294	Pkm	AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2	pyruvate kinase, muscle	protein-coding	0.075000	0.646766			
Oct4_nocontrol_ChIP_peaks_unique-142	chr13	34158839	34159039	+	-0.10857	NA	Intergenic	B3|SINE|B2	-4025	NM_001101430	69666	Mm.24788	NM_001101430	ENSMUSG00000071451	Psmg4	PAC-4|mPAC4	proteasome (prosome, macropain) assembly chaperone 4	protein-coding	0.000000	0.313433			
merged_common-469	chr2	55131116	55131316	+	-0.10857	NA	Intergenic	Charlie14a|DNA|hAT-Charlie	-304754	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.000000	0.283582			
merged_common-465	chr2	38547903	38548103	+	-0.10857	NA	intron (NM_001159631, intron 1 of 9)	Charlie16a|DNA|hAT-Charlie	36127	NM_001159631	59126	Mm.143818	NM_021606	ENSMUSG00000026749	Nek6	1300007C09Rik	NIMA (never in mitosis gene a)-related expressed kinase 6	protein-coding	0.025000	0.532338			
merged_common-719	chr6	129163418	129163618	+	-0.10857	NA	Intergenic	MTD-int|LTR|ERVL-MaLR	-17097	NM_053109	93694	Mm.197536	NM_053109	ENSMUSG00000030157	Clec2d	Clr-b|Clrb|Ocil	C-type lectin domain family 2, member d	protein-coding	0.000000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-197	chr10	17723143	17723343	+	-0.10857	NA	promoter-TSS (NM_010828)	promoter-TSS (NM_010828)	15	NM_010828	17684	Mm.272321	NM_010828	ENSMUSG00000039910	Cited2	AI835299|ER154-like|Mrg1|Msg2|p35srj	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2	protein-coding	0.075000	0.606965			
merged_common-80	chr10	4653147	4653347	+	-0.10857	NA	intron (NM_007956, intron 1 of 8)	intron (NM_007956, intron 1 of 8)	41258	NM_007956	13982	Mm.9213	NM_007956	ENSMUSG00000019768	Esr1	ER|ER-alpha|ERa|ERalpha|ESR|Estr|Estra|Nr3a1	estrogen receptor 1 (alpha)	protein-coding	0.005000	0.343284	14(CATGAAAAATGCATG,+,0.00),14(CATGAAAAATGCATG,-,0.00)		
merged_common-795	chr8	84678432	84678632	+	-0.10857	NA	intron (NM_025788, intron 1 of 5)	intron (NM_025788, intron 1 of 5)	-7792	NM_001364176	212528	Mm.275720	NM_198020	ENSMUSG00000001909	Trmt1	6720406L13Rik|6720477L24|D8Ertd812e	tRNA methyltransferase 1	protein-coding	0.010000	0.412935		14(CATGAAAATGCACA,+,0.00)	-60(ATTGGCATGACAATAC,-,0.00),27(ATTTAAATTATAATGC,-,0.00)
merged_common-22	chr1	72229072	72229272	+	-0.11710	NA	Intergenic	Intergenic	-14821	NR_155355	320933	Mm.440953	NR_155355		D230017M19Rik	B930094L07Rik	RIKEN cDNA D230017M19 gene	ncRNA	0.015000	0.432836			-4(TTTTGCATAACAATTA,-,0.00)
merged_common-281	chr14	118230282	118230482	+	-0.13835	NA	Intergenic	Intergenic	-5850	NR_131970	105245869	Mm.460408	NR_131969	ENSMUSG00000090534	LOC105245869	-	uncharacterized LOC105245869	ncRNA	0.020000	0.363184			-39(GCATTCTAATGCTAAT,+,0.00),13(GCTTTGTCATTCAGTT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1934	chr5	64224735	64224935	+	-0.13835	NA	intron (NM_019636, intron 2 of 19)	L2a|LINE|L2	-5522	NM_001289514	57915	Mm.286353	NM_019636	ENSMUSG00000029174	Tbc1d1	1110062G02Rik|AI385682|AW555803|Nob1|Nobq1|Tbc1|mKIAA1108	TBC1 domain family, member 1	protein-coding	0.005000	0.437811		3(AATGAATATTCATA,+,0.00),3(AATGAATATTCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2371	chr8	44043523	44043723	+	-0.13835	NA	Intergenic	Intergenic	-344132	NM_001079931	384814	Mm.491652	NM_001079931		Gm5347	EG384814	predicted gene 5347	protein-coding	0.000000	0.308458			-67(CATTTGTAATGTACAT,+,0.00)
merged_common-228	chr13	36263596	36263796	+	-0.13835	NA	intron (NM_001039189, intron 3 of 5)	intron (NM_001039189, intron 3 of 5)	146053	NM_001039189	69955	Mm.70690	NM_024274	ENSMUSG00000021420	Fars2	Fars1|pheRS	phenylalanine-tRNA synthetase 2 (mitochondrial)	protein-coding	0.010000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-115	chr1	140578416	140578616	+	-0.13835	NA	intron (NM_001081027, intron 25 of 27)	intron (NM_001081027, intron 25 of 27)	77886	NR_040604	75910	Mm.483845	NR_040604	ENSMUSG00000102368	4930590L20Rik	-	RIKEN cDNA 4930590L20 gene	ncRNA	0.005000	0.328358			-8(GCTTTAATATGCAAAT,+,0.00),81(TTTTTTTCATGTTGAT,+,0.00)
merged_common-234	chr13	48130797	48130997	+	-0.13835	NA	intron (NR_102303, intron 1 of 2)	intron (NR_102303, intron 1 of 2)	-112289	NR_038004	70971	Mm.158514	NR_038004	ENSMUSG00000047324	4931429P17Rik	-	RIKEN cDNA 4931429P17 gene	ncRNA	0.030000	0.532338			-92(TAATTGTCATGCTAAC,+,0.00)
merged_common-144	chr11	44841777	44841977	+	-0.13835	NA	intron (NM_001362579, intron 7 of 16)	intron (NM_001362579, intron 7 of 16)	221649	NM_001362569	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.010000	0.527363			4(GCATTGTTATGCAAAT,+,0.00)
merged_common-27	chr1	80237535	80237735	+	-0.13835	NA	Intergenic	Intergenic	-23691	NM_173425	241128	Mm.145511	NM_173425	ENSMUSG00000043230	Fam124b	A830043J08Rik	family with sequence similarity 124, member B	protein-coding	0.005000	0.368159			-23(CTTTTATAATGTAAAT,+,0.00),-3(CCTTTGTCATGTAAAT,+,0.00)
merged_common-152	chr11	69582011	69582211	+	-0.13835	NA	intron (NM_001127233, intron 1 of 10)	intron (NM_001127233, intron 1 of 10)	1752	NM_011640	22059	Mm.222	NM_011640	ENSMUSG00000059552	Trp53	Tp53|bbl|bfy|bhy|p44|p53	transformation related protein 53	protein-coding	0.005000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-63	chr1	79775998	79776198	+	-0.13835	NA	promoter-TSS (NM_001081210)	promoter-TSS (NM_001081210)	80	NM_001081210	69163	Mm.238455	NM_001081210	ENSMUSG00000026248	Mrpl44	1810030E18Rik|5730593H20Rik|AI463302	mitochondrial ribosomal protein L44	protein-coding	0.070000	0.631841			
Oct4_nocontrol_ChIP_peaks_unique-201	chr15	27933409	27933609	+	-0.13835	NA	intron (NM_001081302, intron 1 of 56)	ORR1C1|LTR|ERVL-MaLR	92339	NM_001081302	223435	Mm.485422	NM_001081302	ENSMUSG00000022263	Trio	6720464I07Rik|AA408740|Solo	triple functional domain (PTPRF interacting)	protein-coding	0.000000	0.412935			-28(CTTTGAATAAGAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1586	chr3	60504877	60505077	+	-0.13835	NA	intron (NM_001253709, intron 1 of 8)	intron (NM_001253709, intron 1 of 8)	3798	NM_001253708	56758	Mm.255723	NM_020007	ENSMUSG00000027763	Mbnl1	Mbnl|mKIAA0428	muscleblind like splicing factor 1	protein-coding	0.005000	0.368159			2(ACTTTGCCTTGCAAAG,+,0.00),55(TTTTAGCCATGCAAAG,+,0.00)
merged_common-554	chr3	108433714	108433914	+	-0.13835	NA	intron (NM_011319, intron 4 of 11)	intron (NM_011319, intron 4 of 11)	11445	NM_001204979	20226	Mm.28688	NM_011319	ENSMUSG00000068739	Sars	Sars1|Strs|serRS	seryl-aminoacyl-tRNA synthetase	protein-coding	0.020000	0.582090			
Oct4_nocontrol_ChIP_peaks_unique-507	chr8	78219677	78219877	+	-0.13835	NA	intron (NM_183096, intron 4 of 13)	intron (NM_183096, intron 4 of 13)	6435	NM_183096	73301	Mm.61243	NM_183096	ENSMUSG00000037101	Ttc29	1700031F13Rik	tetratricopeptide repeat domain 29	protein-coding	0.000000	0.298507		-21(CATGCATATGTATG,+,0.00),-21(CATGCATATGTATG,-,0.00)	65(ATATTCTTTTTAAAAT,+,0.00)
merged_common-374	chr17	66479902	66480102	+	-0.13835	NA	Intergenic	Intergenic	-30252	NM_001114098	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.035000	0.517413			
merged_common-793	chr8	80056089	80056289	+	-0.16414	NA	intron (NM_020259, intron 1 of 12)	intron (NM_020259, intron 1 of 12)	1819	NM_020259	15245	Mm.254493	NM_020259	ENSMUSG00000064325	Hhip	Hhip1	Hedgehog-interacting protein	protein-coding	0.010000	0.338308			22(GTTTACATGATAATAG,-,0.00)
merged_common-720	chr6	133873486	133873686	+	-0.16414	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-19919	NM_010594	16483	Mm.13052	NM_010594	ENSMUSG00000032758	Kap	AW146435|FKSG22	kidney androgen regulated protein	protein-coding	0.000000	0.323383			
merged_common-367	chr17	39848359	39848559	+	-0.17643	NA	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	5462	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.150000	0.711443			
merged_common-122	chr10	127509310	127509510	+	-0.17938	NA	TTS (NM_177707)	TTS (NM_177707)	-5529	NM_001098789	407790	Mm.336856	NM_001098789	ENSMUSG00000040280	Ndufa4l2	BC064011	Ndufa4, mitochondrial complex associated like 2	protein-coding	0.070000	0.611940			
merged_common-258	chr14	46989890	46990090	+	-0.17938	NA	intron (NM_001037221, intron 2 of 12)	intron (NM_001037221, intron 2 of 12)	-11350	NM_001163433	74480	Mm.214454	NM_028966	ENSMUSG00000021838	Samd4	1700024G08Rik|1700111L17Rik|4933436G17Rik|Samd4a|Smaug|Smaug1|sunk	sterile alpha motif domain containing 4	protein-coding	0.015000	0.472637		-21(TGTGAATATTAATG,-,0.00)	-72(GCTTTGTAATGGAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1138	chr17	78501402	78501602	+	-0.18690	NA	Intergenic	Intergenic	-6561	NM_001197028	74199	Mm.292983	NM_028813	ENSMUSG00000024076	Vit	1700052E02Rik|1700110E08Rik|2810429K11Rik|AKH|akhirin	vitrin	protein-coding	0.010000	0.417910			62(TTTTTCTTTTTTAAAC,+,0.00)
merged_common-697	chr6	71454623	71454823	+	-0.18690	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-14086	NM_024288	68477	Mm.28474	NM_024288	ENSMUSG00000002222	Rmnd5a	1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090	required for meiotic nuclear division 5 homolog A	protein-coding	0.000000	0.333333		50(TATGCATATGTAAG,-,0.00)	
merged_common-467	chr2	47327924	47328124	+	-0.20725	NA	Intergenic	Intergenic	-1486085	NM_007396	11480	Mm.314338	NM_007396	ENSMUSG00000052155	Acvr2a	ActrIIa|Acvr2|TactrII	activin receptor IIA	protein-coding	0.000000	0.333333			
merged_common-718	chr6	125215158	125215358	+	-0.22566	NA	promoter-TSS (NM_001080557)	promoter-TSS (NM_001080557)	-323	NM_009496	22317	Mm.32321	NM_009496	ENSMUSG00000030337	Vamp1	Syb-1|Syb1|VAMP-1|lew	vesicle-associated membrane protein 1	protein-coding	0.030000	0.542289		-47(CATGAATATGCATT,+,0.00),-47(CATGAATATGCATT,-,0.00)	
merged_common-310	chr15	86262553	86262753	+	-0.22566	NA	intron (NM_145476, intron 4 of 12)	L1ME4a|LINE|L1	-15022	NM_001358062	223754	Mm.28904	NM_145476	ENSMUSG00000051864	Tbc1d22a	BC023106|D15Ertd781e	TBC1 domain family, member 22a	protein-coding	0.015000	0.472637			2(CTATTGTTATGCATTT,+,0.00)
merged_common-562	chr3	133544257	133544457	+	-0.24247	NA	promoter-TSS (NM_001346736)	promoter-TSS (NM_001346736)	33	NM_001040400	214133	Mm.347816	NM_145989	ENSMUSG00000040943	Tet2	Ayu17-449|E130014J05Rik|mKIAA1546	tet methylcytosine dioxygenase 2	protein-coding	0.115000	0.651741		-35(CATCAATATTCATA,+,0.00),-35(CATCAATATTCATA,-,0.00)	
merged_common-545	chr3	88906872	88907072	+	-0.24247	NA	intron (NM_027389, intron 28 of 31)	B3|SINE|B2	6978	NM_144898	229524	Mm.440405	NM_144898	ENSMUSG00000068922	Msto1	BC008103|mst	misato 1, mitochondrial distribution and morphology regulator	protein-coding	0.000000	0.363184		-34(CATGAATATGCATA,+,0.00),-34(CATGAATATGCATA,-,0.00),-7(AATGAATATGCACA,+,0.00),-7(AATGAATATGCACA,-,0.00)	-29(ATATGCATAAAAATAT,-,0.00)
merged_common-366	chr17	39844952	39845152	+	-0.27336	NA	non-coding (NR_046233, exon 1 of 1)	non-coding (NR_046233, exon 1 of 1)	2055	NR_046233	100861531		NR_046233		Rn45s	-	45S pre-ribosomal RNA	rRNA	0.130000	0.741294			
merged_common-284	chr15	6372619	6372819	+	-0.34389	NA	intron (NM_001008702, intron 1 of 13)	intron (NM_001008702, intron 1 of 13)	-14029	NM_001310446	13132	Mm.240830	NM_023118	ENSMUSG00000022150	Dab2	5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96	disabled 2, mitogen-responsive phosphoprotein	protein-coding	0.005000	0.328358			-79(ATTTACATTACAATGC,-,0.00)
merged_common-512	chr2	165656988	165657188	+	-0.34389	NA	intron (NM_010165, intron 1 of 15)	RLTR12D|LTR|ERVK	1790	NM_010165	14049	Mm.282719	NM_010165	ENSMUSG00000017897	Eya2	Eab1	EYA transcriptional coactivator and phosphatase 2	protein-coding	0.025000	0.532338			
Oct4_nocontrol_ChIP_peaks_unique-151	chr13	70893369	70893569	+	-0.34389	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	10521	NR_157373	77166	Mm.159859	NM_029873		8030423J24Rik	-	RIKEN cDNA 8030423J24 gene	ncRNA	0.030000	0.348259			
merged_common-858	chrX	13230811	13231011	+	-0.34389	NA	Intergenic	LTR72_RN|LTR|ERV1	5372	NR_045430	72122	Mm.75434	NR_045429	ENSMUSG00000100714	2010308F09Rik	-	RIKEN cDNA 2010308F09 gene	ncRNA	0.025000	0.482587		-4(CTTGCATATTTATT,+,0.00),25(CATGAATATGTATA,+,0.00),25(CATGAATATGTATA,-,0.00)	-11(CCTTGCTCTTGCATAT,+,0.00)
merged_common-131	chr11	11881852	11882052	+	-0.34389	NA	intron (NM_001190448, intron 1 of 14)	intron (NM_001190448, intron 1 of 14)	8456	NM_016672	13195	Mm.12906	NM_016672	ENSMUSG00000020182	Ddc	Aadc	dopa decarboxylase	protein-coding	0.005000	0.462687			
merged_common-422	chr19	7436383	7436583	+	-0.34389	NA	intron (NM_053076, intron 1 of 6)	MER91B|DNA|hAT-Tip100	13910	NR_105957	102466781		NR_105957	ENSMUSG00000098293	Mir6991	Gm27966|mmu-mir-6991	microRNA 6991	ncRNA	0.005000	0.398010			62(AACTGCATAACAATAC,-,0.00)
merged_common-9	chr1	44891715	44891915	+	-0.34389	NA	Intergenic	RLTR11B|LTR|ERVK	-146866	NR_040602	75066	Mm.416932	NR_040602	ENSMUSG00000101701	4930521E06Rik	-	RIKEN cDNA 4930521E06 gene	ncRNA	0.000000	0.383085			-5(GTTTGCATAACAAAAG,-,0.00)
merged_common-549	chr3	96104134	96104334	+	-0.34389	NA	promoter-TSS (NM_001025614)	promoter-TSS (NM_001025614)	-293	NM_001025613	229603	Mm.272336	NM_001025613	ENSMUSG00000038495	Otud7b	2900060B22Rik|4930463P07Rik|AI462125|CEZANNE|Trabid2|Za20d1	OTU domain containing 7B	protein-coding	0.060000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-1779	chr4	77448042	77448242	+	-0.34389	NA	intron (NR_160919, intron 4 of 39)	intron (NR_160919, intron 4 of 39)	763600	NM_011211	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.273632		21(TATGCATATGTATG,+,0.00),21(TATGCATATGTATG,-,0.00)	
merged_common-160	chr11	85509230	85509430	+	-0.34389	NA	intron (NM_138681, intron 15 of 25)	intron (NM_138681, intron 15 of 25)	156166	NM_001166642	192197	Mm.209989	NM_138681	ENSMUSG00000059439	Bcas3	1500019F07Rik|2610028P08Rik|AU021018|BC028339|K20D4|rudhira	breast carcinoma amplified sequence 3	protein-coding	0.005000	0.393035			-19(CTATTCTTATGCAAAT,+,0.00)
merged_common-680	chr6	4739884	4740084	+	-0.34389	NA	intron (NM_001130188, intron 1 of 11)	intron (NM_001130188, intron 1 of 11)	7220	NM_011360	20392	Mm.8739	NM_011360	ENSMUSG00000004631	Sgce	e-SG	sarcoglycan, epsilon	protein-coding	0.010000	0.417910			16(ATCTCCATAATAATCA,-,0.00)
merged_common-37	chr1	104653102	104653302	+	-0.34389	NA	Intergenic	Intergenic	-115318	NM_011800	23836	Mm.103640	NM_011800	ENSMUSG00000050840	Cdh20	Cdh7	cadherin 20	protein-coding	0.005000	0.328358			
merged_common-274	chr14	87183270	87183470	+	-0.34544	NA	Intergenic	Intergenic	-42146	NM_019670	56419	Mm.440585	NM_019670	ENSMUSG00000022021	Diaph3	4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2	diaphanous related formin 3	protein-coding	0.005000	0.348259			-95(GTTTTCTCATGTAAAA,+,0.00),-3(GTATGCATAACAATAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2381	chr8	48179103	48179303	+	-0.34544	NA	Intergenic	Intergenic	69190	NM_001161515	320685	Mm.121549	NM_178788	ENSMUSG00000031562	Dctd	6030466N05Rik	dCMP deaminase	protein-coding	0.010000	0.462687			
merged_common-820	chr9	23378340	23378540	+	-0.34544	NA	intron (NM_028472, intron 10 of 14)	intron (NM_028472, intron 10 of 14)	155364	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.010000	0.328358			
merged_common-460	chr2	29820507	29820707	+	-0.34585	NA	Intergenic	Intergenic	-6782	NM_026615	68205	Mm.20273	NM_026615	ENSMUSG00000069020	Urm1	2900073H19Rik	ubiquitin related modifier 1	protein-coding	0.070000	0.651741			-18(ATTAGCACAAGAATGG,-,0.00)
merged_common-4	chr1	18105382	18105582	+	-0.34585	NA	Intergenic	MLTR18B_MM|LTR|ERVK	40420	NM_001347048	78081	Mm.319913	NM_030033	ENSMUSG00000025774	Crisp4	9230112K08Rik	cysteine-rich secretory protein 4	protein-coding	0.005000	0.363184			
merged_common-807	chr8	108722932	108723132	+	-0.34585	NA	intron (NM_007496, intron 1 of 9)	intron (NM_007496, intron 1 of 9)	8388	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.005000	0.572139			
Oct4_nocontrol_ChIP_peaks_unique-273	chr19	9860861	9861061	+	-0.34585	NA	Intergenic	RLTR13D3|LTR|ERVK	38528	NM_016692	16319	Mm.29755	NM_016692	ENSMUSG00000024660	Incenp	2700067E22Rik|AU019509|C130081E20|C77457	inner centromere protein	protein-coding	0.005000	0.383085			
merged_common-282	chr14	121738067	121738267	+	-0.34585	NA	intron (NM_134074, intron 1 of 52)	(CATA)n|Simple_repeat|Simple_repeat	762	NM_001128307	105445	Mm.378591	NM_134074	ENSMUSG00000025558	Dock9	AA959601|AW538057|B230309H04Rik|D14Wsu89e|Zizimin1|mKIAA1058	dedicator of cytokinesis 9	protein-coding	0.005000	0.328358		-7(TATGCATATTTACA,+,0.00),-7(TATGCATATTTACA,-,0.00)	
merged_common-362	chr17	33890641	33890841	+	-0.34585	NA	promoter-TSS (NM_001195298)	promoter-TSS (NM_001195298)	-108	NM_001195298	100502766	Mm.335713	NM_001195298	ENSMUSG00000079553	Kifc1	100042970|Gm4137|HSET|KNSL2|Kifc5a|Knsl2a|Tctex-7|Tctex-7A|Tctex7|Tctex7a	kinesin family member C1	protein-coding	0.110000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-110	chr1	134610650	134610850	+	-0.34585	NA	intron (NM_152895, intron 14 of 26)	L1MD|LINE|L1	-35862	NM_009307	20980	Mm.5102	NM_009307	ENSMUSG00000026452	Syt2	IP4BP|R74640|mKIAA4194|sytII	synaptotagmin II	protein-coding	0.005000	0.318408		59(TTTGCATATGGATG,+,0.00),59(TTTGCATATGGATG,-,0.00)	-78(TTGTGCATAATAAAGA,-,0.00)
merged_common-576	chr4	29102157	29102357	+	-0.34585	NA	Intergenic	Intergenic	34178	NR_151693	102634169		NR_151693		Gm11917	-	predicted gene 11917	ncRNA	0.005000	0.368159			-36(GTATTGTTATGGTAAT,+,0.00)
merged_common-787	chr8	59522927	59523127	+	-0.34585	NA	Intergenic	Intergenic	-302622	NR_126087	75017	Mm.60775	NR_126087	ENSMUSG00000110406	4930470O06Rik	-	RIKEN cDNA 4930470O06 gene	ncRNA	0.005000	0.343284		37(CATGCATATGTATG,+,0.00),37(CATGCATATGTATG,-,0.00)	
merged_common-823	chr9	31280559	31280759	+	-0.34585	NA	5' UTR (NM_199315, exon 1 of 7)	5' UTR (NM_199315, exon 1 of 7)	110	NM_199315	382066	Mm.335039	NM_199315	ENSMUSG00000042496	Prdm10	Gm1112|tristanin	PR domain containing 10	protein-coding	0.050000	0.572139			
merged_common-162	chr11	86501033	86501233	+	-0.34585	NA	3' UTR (NM_001114334, exon 15 of 15)	3' UTR (NM_001114334, exon 15 of 15)	16476	NM_029788	76892	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.005000	0.432836	-43(CATGCATAAAGAATT,+,0.00)		-81(ATTTGAATAAGCAAGG,-,0.00),39(ATTACCAAGACAAAAA,-,0.00)
merged_common-146	chr11	49844603	49844803	+	-0.34585	NA	Intergenic	Intergenic	-2048	NM_001163672	26420	Mm.68933	NM_016961	ENSMUSG00000020366	Mapk9	AI851083|JNK2|Prkm9|p54aSAPK	mitogen-activated protein kinase 9	protein-coding	0.035000	0.497512			67(TTTTGAAAAAAAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2482	chr9	13522181	13522381	+	-0.34585	NA	Intergenic	Intergenic	90920	NR_028271	18689	Mm.41972	NM_008835	ENSMUSG00000031802	Phxr4	Sp5	per-hexamer repeat gene 4	ncRNA	0.025000	0.502488			-75(TCTTTATTATGGTGAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-86	chr11	70916060	70916260	+	-0.34585	NA	intron (NM_019400, intron 8 of 17)	intron (NM_019400, intron 8 of 17)	53813	NM_001083331	19069	Mm.288962	NM_172394	ENSMUSG00000040667	Nup88	Nup84|Prei2	nucleoporin 88	protein-coding	0.010000	0.452736			
merged_common-43	chr1	126074804	126075004	+	-0.34585	NA	intron (NM_172484, intron 8 of 14)	Lx7|LINE|L1	-161976	NM_001311089	72585	Mm.490405	NM_145100	ENSMUSG00000026344	Lypd1	2700050C12Rik|AI853408|C530008O16Rik|Lynx2|Lypdc1	Ly6/Plaur domain containing 1	protein-coding	0.000000	0.278607		-55(AATGAATATGCATA,+,0.00),-55(AATGAATATGCATA,-,0.00),-49(TATGCATATGCAAG,+,0.00),-49(TATGCATATGCAAG,-,0.00)	
merged_common-288	chr15	21082917	21083117	+	-0.34585	NA	Intergenic	Intergenic	-28435	NM_001008420	215654	Mm.300909	NM_001008420	ENSMUSG00000040452	Cdh12	Cdhb	cadherin 12	protein-coding	0.010000	0.348259			
merged_common-805	chr8	107860436	107860636	+	-0.34585	NA	Intergenic	Intergenic	-272054	NM_010817	17463	Mm.18347	NM_010817	ENSMUSG00000039067	Psmd7	AW107203|Mov-34|Mov34	proteasome (prosome, macropain) 26S subunit, non-ATPase, 7	protein-coding	0.005000	0.353234			-58(ATTTGCATGACATTTC,-,0.00),-9(CTTTTCATATTTAAAT,+,0.00),12(GCTTTCTGATGTAAAA,+,0.00)
merged_common-685	chr6	33335180	33335380	+	-0.34585	NA	intron (NM_001347089, intron 6 of 9)	intron (NM_001347089, intron 6 of 9)	86152	NM_001347089	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.000000	0.383085		-58(TATGCAAATGCAAG,-,0.00)	-65(ACATTTTTATGCAAAT,+,0.00),48(TTTGTCTTATGCAAAG,+,0.00)
merged_common-600	chr4	91955299	91955499	+	-0.34585	NA	Intergenic	Intergenic	191822	NM_027034	69314	Mm.55891	NM_027034	ENSMUSG00000028533	Izumo3	1700011H22Rik	IZUMO family member 3	protein-coding	0.010000	0.363184			-26(TTCATTTCATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1887	chr5	8975476	8975676	+	-0.34585	NA	intron (NM_023733, intron 10 of 17)	Lx9|LINE|L1	21570	NM_023733	74114	Mm.28197	NM_023733	ENSMUSG00000003623	Crot	1200003H03Rik	carnitine O-octanoyltransferase	protein-coding	0.005000	0.368159		17(CATACATATGTATT,+,0.00),17(CATACATATGTATT,-,0.00)	
merged_common-216	chr12	95713759	95713959	+	-0.34585	NA	intron (NM_201518, intron 1 of 1)	intron (NM_201518, intron 1 of 1)	21633	NM_201518	399558	Mm.341948	NM_201518	ENSMUSG00000047414	Flrt2	-	fibronectin leucine rich transmembrane protein 2	protein-coding	0.005000	0.338308			
merged_common-185	chr12	3236134	3236334	+	-0.34908	NA	intron (NR_015551, intron 1 of 6)	intron (NR_015551, intron 1 of 6)	443	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.030000	0.378109		16(CATAAATTTGCATA,+,0.00)	50(ATTTCCATAAACATAA,-,0.00)
merged_common-253	chr14	10174979	10175179	+	-0.35396	NA	intron (NM_001308286, intron 2 of 6)	intron (NM_001308286, intron 2 of 6)	278379	NM_001308286	14198	Mm.397619	NM_010210	ENSMUSG00000060579	Fhit	AW045638|Fra14A2	fragile histidine triad gene	protein-coding	0.005000	0.383085		20(TATAAATATTCAAG,-,0.00)	
merged_common-292	chr15	34952781	34952981	+	-0.35399	NA	intron (NM_019635, intron 9 of 10)	intron (NM_019635, intron 9 of 10)	114832	NM_001271704	16539	Mm.71045	NM_181317	ENSMUSG00000050963	Kcns2	E130006J24Rik|Kv9.2	K+ voltage-gated channel, subfamily S, 2	protein-coding	0.005000	0.368159			
merged_common-73	chr1	180933774	180933974	+	-0.35399	NA	Intergenic	Intergenic	-1148	NM_010094	13590	Mm.378911	NM_010094	ENSMUSG00000038793	Lefty1	AI450052|Ebaf|Leftb|Stra3|Tgfb4|lefty|lefty-1	left right determination factor 1	protein-coding	0.010000	0.572139			-5(TTCTGCATAACAAAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-395	chr11	57645257	57645457	+	-0.35399	NA	promoter-TSS (NM_134189)	promoter-TSS (NM_134189)	-85	NM_134189	171212	Mm.271670	NM_134189	ENSMUSG00000020520	Galnt10	AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase	polypeptide N-acetylgalactosaminyltransferase 10	protein-coding	0.095000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-574	chr12	74882678	74882878	+	-0.35399	NA	Intergenic	LTR53B|LTR|ERVL	294554	NM_172805	238271	Mm.44465	NM_172805	ENSMUSG00000034402	Kcnh5	Eag2	potassium voltage-gated channel, subfamily H (eag-related), member 5	protein-coding	0.005000	0.373134			25(GTATTATGATGCATAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-510	chr8	82011324	82011524	+	-0.35399	NA	intron (NM_001297593, intron 16 of 23)	intron (NM_001297593, intron 16 of 23)	391162	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.005000	0.358209		17(TATGCATATTCATG,+,0.00),17(TATGCATATTCATG,-,0.00)	-93(ATTTTGTTATTCTAAA,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-124	chr12	85264840	85265040	+	-0.35399	NA	intron (NM_175337, intron 2 of 11)	intron (NM_175337, intron 2 of 11)	5651	NM_001304475	217716	Mm.311981	NM_145446	ENSMUSG00000021245	Mlh3	AV125803|BB126472	mutL homolog 3	protein-coding	0.005000	0.293532			-57(TTTTCCATAAGAAAAA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-438	chr6	55159416	55159616	+	-0.35399	NA	Intergenic	Intergenic	15474	NM_009349	21743	Mm.299	NM_009349	ENSMUSG00000003477	Inmt	Temt	indolethylamine N-methyltransferase	protein-coding	0.005000	0.517413			-36(ATTAGCATAACCATAG,-,0.00),13(CTTGAGTCATGTAAAT,+,0.00)
merged_common-236	chr13	54693938	54694138	+	-0.35399	NA	promoter-TSS (NR_027396)	promoter-TSS (NR_027396)	-78	NR_027396	105239	Mm.25366	NM_134064	ENSMUSG00000034928	Rnf44	AI854545|mKIAA1100	ring finger protein 44	protein-coding	0.115000	0.741294			
merged_common-587	chr4	57490102	57490302	+	-0.35399	NA	Intergenic	Intergenic	-78046	NM_172868	242481	Mm.331630	NM_172868	ENSMUSG00000090053	Palm2	53-H12|B130066I24|R75368|pEN70	paralemmin 2	protein-coding	0.015000	0.462687			-12(CTATTCTTATGCATTT,+,0.00)
merged_common-414	chr18	65893253	65893453	+	-0.35399	NA	Intergenic	Intergenic	19867	NM_175012	225642	Mm.20298	NM_175012	ENSMUSG00000024517	Grp	BLP	gastrin releasing peptide	protein-coding	0.020000	0.472637		-15(TATGAATATGCATA,+,0.00),-15(TATGAATATGCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-382	chr11	48817093	48817293	+	-0.35399	NA	5' UTR (NM_145377, exon 1 of 6)	5' UTR (NM_145377, exon 1 of 6)	198	NM_145377	211007	Mm.794	NM_145377	ENSMUSG00000040365	Trim41	AW552703|BC020156|R75223|RINCK	tripartite motif-containing 41	protein-coding	0.120000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-1409	chr2	80315470	80315670	+	-0.35399	NA	5' UTR (NM_024181, exon 1 of 23)	5' UTR (NM_024181, exon 1 of 23)	104	NM_024181	66861	Mm.21762	NM_024181	ENSMUSG00000027006	Dnajc10	1200006L06Rik|D2Ertd706e|ERdj5|JPDI	DnaJ heat shock protein family (Hsp40) member C10	protein-coding	0.095000	0.696517			
merged_common-148	chr11	54492480	54492680	+	-0.35399	NA	intron (NM_173753, intron 9 of 17)	L1M4|LINE|L1	-30265	NM_001252496	192786	Mm.254404	NM_175258	ENSMUSG00000037533	Rapgef6	A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052	Rap guanine nucleotide exchange factor (GEF) 6	protein-coding	0.000000	0.348259			
merged_common-18	chr1	62903141	62903341	+	-0.35399	NA	Intergenic	L1ME3A|LINE|L1	-108509	NR_040601	74992	Mm.401979	NR_040601		4930487H11Rik	-	RIKEN cDNA 4930487H11 gene	ncRNA	0.015000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-1469	chr2	132253227	132253427	+	-0.35399	NA	promoter-TSS (NM_011045)	promoter-TSS (NM_011045)	-147	NM_011045	18538	Mm.7141	NM_011045	ENSMUSG00000027342	Pcna	-	proliferating cell nuclear antigen	protein-coding	0.075000	0.626866			
merged_common-222	chr13	14427360	14427560	+	-0.35399	NA	intron (NM_001081348, intron 2 of 28)	intron (NM_001081348, intron 2 of 28)	95766	NM_001081348	94253	Mm.125298	NM_153130	ENSMUSG00000021301	Hecw1	9330116H24Rik|AV273951|E130207I19Rik|Nedl1	HECT, C2 and WW domain containing E3 ubiquitin protein ligase 1	protein-coding	0.005000	0.363184			-45(GGCTTGTCATGCTAAG,+,0.00),2(CTTTGCATAACAAAAG,-,0.00)
merged_common-186	chr12	8620534	8620734	+	-0.35399	NA	Intergenic	Intergenic	-21568	NM_177802	328059	Mm.46326	NM_177802	ENSMUSG00000020600	Slc7a15	Arpat	solute carrier family 7 (cationic amino acid transporter, y+ system), member 15	protein-coding	0.005000	0.159204			34(TTATTATTTTTAAAAT,+,0.00),57(ATTAAAATAATAAATT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-14	chr1	35232723	35232923	+	-0.35399	NA	Intergenic	L1MC|LINE|L1	382834	NM_001357425	226971	Mm.292751	NM_145516	ENSMUSG00000026123	Plekhb2	2310009M15Rik|AU018239|Evt2|Phdc|evt-2	pleckstrin homology domain containing, family B (evectins) member 2	protein-coding	0.010000	0.442786			53(CCTTTCACATGCTGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-867	chr15	42674119	42674319	+	-0.35399	NA	intron (NM_001286062, intron 1 of 8)	intron (NM_001286062, intron 1 of 8)	2758	NM_001286062	11600	Mm.309336	NM_009640	ENSMUSG00000022309	Angpt1	1110046O21Rik|Ang-1|Ang1	angiopoietin 1	protein-coding	0.000000	0.368159		6(TATGCAAATTCAAG,-,0.00)	
merged_common-717	chr6	119418962	119419162	+	-0.35399	NA	Intergenic	Tigger16b|DNA|TcMar-Tigger	-1534	NM_197985	68465	Mm.291826	NM_197985	ENSMUSG00000030168	Adipor2	1110001I14Rik|ADCR2|AI115388|AW554121|D6Ucla1e|Paqr2	adiponectin receptor 2	protein-coding	0.020000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-1564	chr3	38909011	38909211	+	-0.35399	NA	intron (NM_183221, intron 1 of 16)	intron (NM_183221, intron 1 of 16)	22171	NM_183221	329628	Mm.316210	NM_183221	ENSMUSG00000046743	Fat4	6030410K14Rik|9430004M15	FAT atypical cadherin 4	protein-coding	0.000000	0.293532			
Oct4_nocontrol_ChIP_peaks_unique-384	chr4	57922849	57923049	+	-0.35399	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	-6685	NM_178727	242484	Mm.23214	NM_178727	ENSMUSG00000052117	D630039A03Rik	-	RIKEN cDNA D630039A03 gene	protein-coding	0.010000	0.432836			
merged_common-405	chr18	44808350	44808550	+	-0.35399	NA	intron (NM_001085373, intron 1 of 18)	L1MB8|LINE|L1	3732	NM_001085373	328949	Mm.312511	NM_001033406	ENSMUSG00000071856	Mcc	D18Ertd451e|E330037C19	mutated in colorectal cancers	protein-coding	0.010000	0.373134		40(CATGAATATTCATG,+,0.00),40(CATGAATATTCATG,-,0.00)	-39(ATTTCCATGACACTCA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2142	chr6	114368212	114368412	+	-0.35399	NA	Intergenic	L1ME2|LINE|L1	-29624	NM_008285	15465	Mm.333327	NM_008285	ENSMUSG00000053004	Hrh1	Bphs|H1R|HH1R|Hir	histamine receptor H1	protein-coding	0.020000	0.487562			
merged_common-238	chr13	77455982	77456182	+	-0.35399	NA	intron (NM_001145676, intron 19 of 19)	RLTR21|LTR|ERVK	-252608	NM_138312	68675	Mm.343005	NM_138312	ENSMUSG00000064138	Fam172a	1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87	family with sequence similarity 172, member A	protein-coding	0.000000	0.223881			
ePOU_nocontrol_ChIP_peaks_unique-2309	chr7	127031569	127031769	+	-0.35399	NA	intron (NM_145588, intron 8 of 13)	B4A|SINE|B4	-5190	NM_010772	17188	Mm.378964	NM_010772	ENSMUSG00000030678	Maz	MAZI|PUR1|Pur-1|SAF-1|SAF-2	MYC-associated zinc finger protein (purine-binding transcription factor)	protein-coding	0.000000	0.462687		-17(CATCCATATGCATA,+,0.00),-17(CATCCATATGCATA,-,0.00),-11(TATGCATATGCACA,+,0.00),-11(TATGCATATGCACA,-,0.00)	
merged_common-52	chr1	144121654	144121854	+	-0.35399	NA	Intergenic	ORR1A2|LTR|ERVL-MaLR	55618	NM_153171	246709	Mm.38271	NM_153171	ENSMUSG00000051079	Rgs13	-	regulator of G-protein signaling 13	protein-coding	0.000000	0.398010			
Oct4_nocontrol_ChIP_peaks_unique-88	chr11	79720566	79720766	+	-0.35399	NA	Intergenic	MER46C|DNA|TcMar-Tigger	-5734	NR_029959	723853		NR_029959	ENSMUSG00000065489	Mir365-2	Mirn365-2|mir-365-2	microRNA 365-2	ncRNA	0.010000	0.388060		-27(TATGAATATTCATA,+,0.00),-27(TATGAATATTCATA,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-542	chr9	96811910	96812110	+	-0.35399	NA	Intergenic	Lx8|LINE|L1	46448	NR_102295	319707	Mm.392191	NR_102293	ENSMUSG00000101581	C430002N11Rik	-	RIKEN cDNA C430002N11 gene	ncRNA	0.005000	0.358209			-35(CCATTTACTTGCAAAT,+,0.00),43(CTATTCATTTGCTAAT,+,0.00)
merged_common-229	chr13	36903898	36904098	+	-0.35399	NA	intron (NM_028784, intron 11 of 14)	intron (NM_028784, intron 11 of 14)	145215	NM_028784	74145	Mm.235105	NM_028784	ENSMUSG00000039109	F13a1	1200014I03Rik|AI462306|F13a	coagulation factor XIII, A1 subunit	protein-coding	0.010000	0.378109			32(GTTTTGTCTTTATAAT,+,0.00),38(TCTTTATAATGCAAAT,+,0.00)
merged_common-338	chr16	78265300	78265500	+	-0.35399	NA	Intergenic	Intergenic	-9946	NR_045698	100503619	Mm.387531	NR_045698	ENSMUSG00000109841	E330011O21Rik	-	RIKEN cDNA E330011O21 gene	ncRNA	0.005000	0.482587			8(GCTTTGAAATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1830	chr4	117915113	117915313	+	-0.35399	NA	promoter-TSS (NM_146152)	promoter-TSS (NM_146152)	-214	NM_146152	230673	Mm.287810	NM_146152	ENSMUSG00000033365	Ipo13	Imp13|Kap13|Ranbp13	importin 13	protein-coding	0.110000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-412	chr11	63443840	63444040	+	-0.35399	NA	Intergenic	Intergenic	311137	NM_001302260	18858	Mm.1237	NM_008885	ENSMUSG00000018217	Pmp22	22kDa|Gas-3|HNPP|TRE002|Tr|trembler	peripheral myelin protein 22	protein-coding	0.005000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-1044	chr17	5440170	5440370	+	-0.35399	NA	promoter-TSS (NM_027457)	promoter-TSS (NM_027457)	-10	NM_027457	70544	Mm.46654	NM_027457	ENSMUSG00000004945	Tmem242	1110008A10Rik|2310046K16Rik|5730437N04Rik	transmembrane protein 242	protein-coding	0.040000	0.542289			
merged_common-667	chr5	129725064	129725264	+	-0.35399	NA	promoter-TSS (NM_008095)	promoter-TSS (NM_008095)	89	NM_008095	14467	Mm.12468	NM_008095	ENSMUSG00000029432	Nipsnap2	AV006093|Gbas	nipsnap homolog 2	protein-coding	0.140000	0.781095			
ePOU_nocontrol_ChIP_peaks_unique-915	chr15	81969424	81969624	+	-0.35399	NA	Intergenic	Intergenic	-8594	NM_001282040	29858	Mm.18939	NM_013872	ENSMUSG00000022474	Pmm1	C77612	phosphomannomutase 1	protein-coding	0.010000	0.402985			-68(ATATAAAAAAGAAAAG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-268	chr18	79109532	79109732	+	-0.35399	NA	promoter-TSS (NM_053099)	promoter-TSS (NM_053099)	-241	NM_053099	240427	Mm.312871	NM_053099	ENSMUSG00000024548	Setbp1	C130092E12|Seb|mKIAA0437	SET binding protein 1	protein-coding	0.045000	0.412935		-14(CATAAATATGCATA,+,0.00),-14(CATAAATATGCATA,-,0.00),-8(TATGCATATGTACA,+,0.00),-8(TATGCATATGTACA,-,0.00)	-19(ATATACATAAATATGC,-,0.00)
merged_common-299	chr15	63163292	63163492	+	-0.36568	NA	Intergenic	(TG)n|Simple_repeat|Simple_repeat	316216	NR_045279	432958	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.010000	0.437811			
merged_common-68	chr1	176948811	176949011	+	-0.37372	NA	intron (NR_151682, intron 16 of 16)	intron (NR_151682, intron 16 of 16)	-112778	NR_037996	15365	Mm.441435	NR_037996		Hmga2-ps1	EG666235|Gm7996|Hmgic-ps1|[y]i-c	high mobility group AT-hook 2, pseudogene 1	pseudo	0.010000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-1242	chr18	80469720	80469920	+	-0.37372	NA	promoter-TSS (NM_026295)	promoter-TSS (NM_026295)	-128	NM_026295	67655	Mm.312893	NM_026295	ENSMUSG00000033323	Ctdp1	4930563P03Rik|AW553592	CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1	protein-coding	0.115000	0.661692			
merged_common-96	chr10	38595082	38595282	+	-0.37372	NA	Intergenic	Intergenic	226597	NM_001177783	215919	Mm.294313	NM_001177783	ENSMUSG00000094311	Rfpl4b	100040915|Gm3037|Gm62	ret finger protein-like 4B	protein-coding	0.005000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-244	chr10	62449821	62450021	+	-0.37372	NA	promoter-TSS (NM_181423)	promoter-TSS (NM_181423)	-183	NM_001359806	338359	Mm.235898	NM_181423	ENSMUSG00000020079	Supv3l1	6330443E10Rik	suppressor of var1, 3-like 1 (S. cerevisiae)	protein-coding	0.070000	0.532338			
Oct4_nocontrol_ChIP_peaks_unique-55	chr10	40420955	40421155	+	-0.37372	NA	intron (NM_198164, intron 2 of 11)	intron (NM_198164, intron 2 of 11)	71747	NM_001168304	78334	Mm.200924	NM_198164	ENSMUSG00000038481	Cdk19	2700084L06Rik|AI845279|AW228747|CDK11|Cdc2l6|mKIAA1028	cyclin-dependent kinase 19	protein-coding	0.000000	0.462687	45(CATGCTTTATGCAAG,-,0.00)		22(AGTTACATAAGAAAGA,-,0.00)
merged_common-669	chr5	132526525	132526725	+	-0.37372	NA	intron (NM_001363480, intron 1 of 19)	intron (NM_001363480, intron 1 of 19)	16595	NM_001363480	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.005000	0.402985			-42(ATTTCCATAAGAATCA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2247	chr7	82735162	82735362	+	-0.37372	NA	intron (NM_175317, intron 15 of 19)	ORR1C2-int|LTR|ERVL-MaLR	20382	NR_046004	77800	Mm.444811	NR_046004	ENSMUSG00000086690	4933406J10Rik	A930009F24Rik	RIKEN cDNA 4933406J10 gene	ncRNA	0.005000	0.402985			-26(ATTAGCATTCCAAAAG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-26	chr1	135344084	135344284	+	-0.37372	NA	intron (NM_053106, intron 1 of 2)	(TG)n|Simple_repeat|Simple_repeat	19371	NM_053106	93689	Mm.180124	NM_053106	ENSMUSG00000048096	Lmod1	9530015K06Rik|SM-Lmod	leiomodin 1 (smooth muscle)	protein-coding	0.015000	0.537313			
merged_common-426	chr19	29194301	29194501	+	-0.37372	NA	Intergenic	Intergenic	-57402	NM_001048177	16452	Mm.275839	NM_008413	ENSMUSG00000024789	Jak2	Fd17	Janus kinase 2	protein-coding	0.005000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-191	chr10	5318013	5318213	+	-0.37372	NA	intron (NM_001347711, intron 42 of 145)	(CATATA)n|Simple_repeat|Simple_repeat	-123406	NM_001079686	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.005000	0.273632		-33(ATTGTATATGCATA,+,0.00),-5(TATGCATATGCATA,+,0.00),-5(TATGCATATGCATA,-,0.00),59(TATGTATATGTATG,+,0.00),59(TATGTATATGTATG,-,0.00)	
merged_common-40	chr1	121567805	121568005	+	-0.37372	NA	promoter-TSS (NM_025860)	promoter-TSS (NM_025860)	75	NM_025860	66942	Mm.44219	NM_025860	ENSMUSG00000001674	Ddx18	2310005B10Rik	DEAD (Asp-Glu-Ala-Asp) box polypeptide 18	protein-coding	0.095000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-1472	chr2	133446531	133446731	+	-0.37372	NA	Intergenic	Intergenic	-105528	NM_007553	12156	Mm.103205	NM_007553	ENSMUSG00000027358	Bmp2	AI467020|Bmp2a	bone morphogenetic protein 2	protein-coding	0.000000	0.363184			
merged_common-765	chr7	139213330	139213530	+	-0.37372	NA	promoter-TSS (NM_001162540)	promoter-TSS (NM_001162540)	-123	NM_001162540	57740	Mm.65336	NM_021302	ENSMUSG00000015981	Stk32c	PKE|Pkek|YANK3	serine/threonine kinase 32C	protein-coding	0.070000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-2498	chr9	23452390	23452590	+	-0.37372	NA	intron (NM_028472, intron 13 of 14)	intron (NM_028472, intron 13 of 14)	229414	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.005000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-1599	chr3	68488393	68488593	+	-0.37372	NA	intron (NM_001282045, intron 1 of 7)	intron (NM_001282045, intron 1 of 7)	-5688	NM_001282044	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.015000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-154	chr1	171247070	171247270	+	-0.37372	NA	promoter-TSS (NM_153064)	promoter-TSS (NM_153064)	-48	NM_153064	226646	Mm.21669	NM_153064	ENSMUSG00000013593	Ndufs2	CI-49kD	NADH:ubiquinone oxidoreductase core subunit S2	protein-coding	0.080000	0.606965			
Oct4_nocontrol_ChIP_peaks_unique-100	chr11	106612942	106613142	+	-0.37372	NA	promoter-TSS (NM_198292)	promoter-TSS (NM_198292)	-112	NM_198292	21763	Mm.102407	NM_198292	ENSMUSG00000040548	Tex2	4930568E07Rik|AI553404|Def-5|Taz4	testis expressed gene 2	protein-coding	0.150000	0.820896			
merged_common-134	chr11	20347703	20347903	+	-0.37372	NA	Intergenic	Intergenic	-15090	NM_018861	55963	Mm.6379	NM_018861	ENSMUSG00000020142	Slc1a4	ASCT-1|ASCT1|AW045657|SATT	solute carrier family 1 (glutamate/neutral amino acid transporter), member 4	protein-coding	0.020000	0.502488			
Oct4_nocontrol_ChIP_peaks_unique-368	chr3	145746382	145746582	+	-0.37372	NA	Intergenic	Intergenic	-12210	NM_026993	69219	Mm.234247	NM_026993	ENSMUSG00000028194	Ddah1	2410006N07Rik|2510015N06Rik|AI987801|AW050362	dimethylarginine dimethylaminohydrolase 1	protein-coding	0.000000	0.273632			
ePOU_nocontrol_ChIP_peaks_unique-643	chr13	24018770	24018970	+	-0.37372	NA	intron (NM_026825, intron 37 of 37)	intron (NM_026825, intron 37 of 37)	-27656	NM_145399	214189	Mm.255667	NM_145399	ENSMUSG00000021337	Scgn	-	secretagogin, EF-hand calcium binding protein	protein-coding	0.010000	0.402985	34(CATGCATTTTGCACT,+,0.00)		21(ACATTGTCATTTACAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-30	chr1	152767397	152767597	+	-0.37372	NA	intron (NM_026369, intron 1 of 3)	intron (NM_026369, intron 1 of 3)	955	NM_026369	67771	Mm.288974	NM_026369	ENSMUSG00000008475	Arpc5	5830443F10Rik|p16-Arc	actin related protein 2/3 complex, subunit 5	protein-coding	0.015000	0.368159		67(TCTGAATATTCATA,+,0.00),67(TCTGAATATTCATA,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-51	chr10	24470065	24470265	+	-0.37372	NA	intron (NR_163910, intron 3 of 4)	intron (NR_163910, intron 3 of 4)	-125277	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ccn2	Ctgf|Fisp12|Hcs24|fisp-12	cellular communication network factor 2	protein-coding	0.000000	0.293532		-53(TATGCATATGTAGA,+,0.00),-53(TATGCATATGTAGA,-,0.00)	-1(ATATGATCTTGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-657	chr13	41358959	41359159	+	-0.37372	NA	promoter-TSS (NM_017464)	promoter-TSS (NM_017464)	-58	NM_017464	18003	Mm.288980	NM_017464	ENSMUSG00000021365	Nedd9	Cas-L|CasL|HEF1|MEF1|Nedd-9|p105	neural precursor cell expressed, developmentally down-regulated gene 9	protein-coding	0.085000	0.592040			
Oct4_nocontrol_ChIP_peaks_unique-374	chr4	15146424	15146624	+	-0.37372	NA	intron (NM_178617, intron 1 of 12)	intron (NM_178617, intron 1 of 12)	2607	NM_178617	69352	Mm.389031	NM_178617	ENSMUSG00000040536	Necab1	1700003H21Rik|Efcbp1|STIP-1	N-terminal EF-hand calcium binding protein 1	protein-coding	0.010000	0.333333	78(AATGAATAATTCAGA,+,0.00),78(AATGAATAATTCAGA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1764	chr4	57306489	57306689	+	-0.37372	NA	Intergenic	URR1A|DNA|hAT-Charlie	-4752	NM_011207	545622	Mm.246552	NM_011207	ENSMUSG00000038764	Ptpn3	9530011I20Rik|PTP-H1|PTPCL	protein tyrosine phosphatase, non-receptor type 3	protein-coding	0.010000	0.432836			9(ATTTACATTATAATGC,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-477	chr7	90023827	90024027	+	-0.37372	NA	Intergenic	B2_Mm2|SINE|B2	-5232	NR_110364	319711	Mm.31753	NR_015614	ENSMUSG00000097585	E230029C05Rik	AI452102|B230337J15|Gm26529|Gm32094	RIKEN cDNA E230029C05 gene	ncRNA	0.000000	0.383085	42(CATAAAATATTCATA,+,0.00)		15(CTTCTGGCATGCATAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-407	chr4	149773956	149774156	+	-0.37372	NA	5' UTR (NM_027460, exon 1 of 7)	5' UTR (NM_027460, exon 1 of 7)	211	NM_027460	70556	Mm.41877	NM_027460	ENSMUSG00000028982	Slc25a33	5730438N18Rik|Pnc1	solute carrier family 25, member 33	protein-coding	0.135000	0.726368			
Oct4_nocontrol_ChIP_peaks_unique-117	chr12	42052015	42052215	+	-0.37372	NA	Intergenic	Intergenic	-566058	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.000000	0.323383		38(GATGCATATTCATT,+,0.00),38(GATGCATATTCATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2055	chr6	32649832	32650032	+	-0.37372	NA	Intergenic	Intergenic	-61740	NM_175750	243743	Mm.444029	NM_175750	ENSMUSG00000029765	Plxna4	9330117B14|Plxa4|mKIAA1550	plexin A4	protein-coding	0.000000	0.402985		-45(TCTGCATATGAATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-383	chr11	49204108	49204308	+	-0.37372	NA	promoter-TSS (NM_001362727)	promoter-TSS (NM_001362727)	-111	NM_001362727	22720	Mm.16650	NM_009562	ENSMUSG00000046311	Zfp62	-	zinc finger protein 62	protein-coding	0.035000	0.522388			
merged_common-197	chr12	34831614	34831814	+	-0.37372	NA	intron (NM_001271386, intron 2 of 27)	intron (NM_001271386, intron 2 of 27)	85381	NM_001271386	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.010000	0.323383			51(ACATTATTATTTAAAT,+,0.00)
merged_common-617	chr4	141790699	141790899	+	-0.37372	NA	promoter-TSS (NM_172338)	promoter-TSS (NM_172338)	-155	NM_172338	214063	Mm.39102	NM_172338	ENSMUSG00000040697	Dnajc16	2900037O03Rik|4732437J24Rik|D030060M24|mKIAA0962	DnaJ heat shock protein family (Hsp40) member C16	protein-coding	0.085000	0.611940			
Oct4_nocontrol_ChIP_peaks_unique-5	chr1	39536144	39536344	+	-0.37372	NA	exon (NM_028043, exon 1 of 7)	exon (NM_028043, exon 1 of 7)	543	NM_028043	52846	Mm.259421	NM_028043	ENSMUSG00000003135	Cnot11	2410015L18Rik|C40|D1Bwg0212e	CCR4-NOT transcription complex, subunit 11	protein-coding	0.140000	0.746269			
ePOU_nocontrol_ChIP_peaks_unique-789	chr14	61556722	61556922	+	-0.37372	NA	promoter-TSS (NM_001310603)	promoter-TSS (NM_001310603)	64	NM_001310603	66674	Mm.282706	NM_025697	ENSMUSG00000021930	Spryd7	6330409N04Rik|Clld6	SPRY domain containing 7	protein-coding	0.095000	0.736318			
ePOU_nocontrol_ChIP_peaks_unique-2025	chr5	151316600	151316800	+	-0.37372	NA	Intergenic	Intergenic	-51975	NR_045699	625175	Mm.443286	NR_045699	ENSMUSG00000097321	1700028E10Rik	A630054D14|Gm6561	RIKEN cDNA 1700028E10 gene	ncRNA	0.020000	0.373134			
merged_common-546	chr3	89430337	89430537	+	-0.37372	NA	promoter-TSS (NM_001293767)	promoter-TSS (NM_001293767)	223	NM_001293768	68911	Mm.22521	NM_026869	ENSMUSG00000047824	Pygo2	1190004M21Rik	pygopus 2	protein-coding	0.080000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-112	chr1	134910621	134910821	+	-0.37372	NA	intron (NM_001081307, intron 1 of 24)	B1_Mus2|SINE|Alu	35578	NR_162775	114482779		NR_162775		Mir5104b	mmu-mir-5104b	microRNA mir-5104b	ncRNA	0.000000	0.417910			-38(CAATTATTATGGAAAT,+,0.00)
merged_common-565	chr3	138728798	138728998	+	-0.37372	NA	Intergenic	Intergenic	-1914	NR_040545	74635	Mm.410825	NR_040545	ENSMUSG00000105838	4930425O10Rik	-	RIKEN cDNA 4930425O10 gene	ncRNA	0.010000	0.353234	-29(AATGAATAATTCAAC,+,0.00),-29(AATGAATAATTCAAC,-,0.00)		
merged_common-790	chr8	62091942	62092142	+	-0.37372	NA	intron (NM_001136089, intron 3 of 11)	intron (NM_001136089, intron 3 of 11)	31151	NM_001136089	26359	Mm.42179	NM_011922	ENSMUSG00000031635	Anxa10	-	annexin A10	protein-coding	0.000000	0.368159			
Oct4_nocontrol_ChIP_peaks_unique-46	chr10	13305188	13305388	+	-0.37372	NA	intron (NM_001195065, intron 1 of 12)	intron (NM_001195065, intron 1 of 12)	19001	NM_001033257	215789	Mm.283359	NM_001033257	ENSMUSG00000062866	Phactr2	AV158170|BC012871	phosphatase and actin regulator 2	protein-coding	0.005000	0.422886		27(CCTAAATATGCATG,+,0.00),27(CCTAAATATGCATG,-,0.00)	32(ATATGCATGAGAAAGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-671	chr13	51846421	51846621	+	-0.37372	NA	promoter-TSS (NM_011817)	promoter-TSS (NM_011817)	-154	NM_011817	23882	Mm.281298	NM_011817	ENSMUSG00000021453	Gadd45g	AI327420|C86281|CR6|DDIT2|OIG37	growth arrest and DNA-damage-inducible 45 gamma	protein-coding	0.050000	0.592040			51(ATTTGCATCAGAAAGC,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-408	chr4	150337471	150337671	+	-0.37372	NA	intron (NM_001085492, intron 1 of 22)	intron (NM_001085492, intron 1 of 22)	55655	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.005000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-1334	chr2	14862761	14862961	+	-0.37372	NA	intron (NM_001252533, intron 1 of 12)	intron (NM_001252533, intron 1 of 12)	-10795	NM_001309519	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.000000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-545	chr12	51348116	51348316	+	-0.37372	NA	promoter-TSS (NM_001167964)	promoter-TSS (NM_001167964)	-14	NM_001167963	217558	Mm.253264	NM_001015099	ENSMUSG00000035293	G2e3	6030408C04Rik|9030416F18|AW046379|D930034K21Rik|mKIAA1333	G2/M-phase specific E3 ubiquitin ligase	protein-coding	0.110000	0.671642			
Oct4_nocontrol_ChIP_peaks_unique-322	chr2	126437643	126437843	+	-0.37372	NA	intron (NM_001359975, intron 6 of 27)	L1ME4b|LINE|L1	53810	NM_001080944	241633	Mm.222235	NM_001080944	ENSMUSG00000060131	Atp8b4	Im	ATPase, class I, type 8B, member 4	protein-coding	0.000000	0.383085		-49(CATGCATATTCAGA,+,0.00),-49(CATGCATATTCAGA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1370	chr2	43722794	43722994	+	-0.37372	NA	Intergenic	Intergenic	-25930	NM_001301831	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.025000	0.452736			
Oct4_nocontrol_ChIP_peaks_unique-78	chr11	29883092	29883292	+	-0.37372	NA	intron (NM_146016, intron 5 of 41)	intron (NM_146016, intron 5 of 41)	-57524	NM_176829	216622	Mm.443260	NM_176829	ENSMUSG00000078157	4931440F15Rik	Fem1ab	RIKEN cDNA 4931440F15 gene	protein-coding	0.005000	0.437811			6(TCTTTCATATGCAAAT,+,0.00)
merged_common-621	chr4	151862142	151862342	+	-0.37372	NA	promoter-TSS (NM_001195565)	promoter-TSS (NM_001195565)	-474	NM_001081557	100072	Mm.318846	NM_001081557	ENSMUSG00000014592	Camta1	1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833	calmodulin binding transcription activator 1	protein-coding	0.110000	0.706468			
merged_common-214	chr12	92123803	92124003	+	-0.37372	NA	Intergenic	Intergenic	-274746	NM_011344	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.005000	0.328358			
Oct4_nocontrol_ChIP_peaks_unique-329	chr2	155074375	155074575	+	-0.37372	NA	promoter-TSS (NM_016661)	promoter-TSS (NM_016661)	22	NM_016661	269378	Mm.330692	NM_016661	ENSMUSG00000027597	Ahcy	AA987153|AL024110|CuBP|SAHH	S-adenosylhomocysteine hydrolase	protein-coding	0.080000	0.597015		20(TTTGAATATTCATG,+,0.00),20(TTTGAATATTCATG,-,0.00)	
merged_common-670	chr5	134688748	134688948	+	-0.37372	NA	promoter-TSS (NM_010717)	promoter-TSS (NM_010717)	-258	NM_010717	16885	Mm.15409	NM_010717	ENSMUSG00000029674	Limk1	KIZ-1|LIMK-1|Limk	LIM-domain containing, protein kinase	protein-coding	0.055000	0.616915			
Oct4_nocontrol_ChIP_peaks_unique-243	chr17	35503964	35504164	+	-0.37372	NA	Intergenic	Intergenic	-1968	NM_013633	18999	Mm.17031	NM_013633	ENSMUSG00000024406	Pou5f1	NF-A3|Oct-3|Oct-3/4|Oct-4|Oct3|Oct3/4|Oct4|Otf-3|Otf-4|Otf3|Otf3-rs7|Otf3g|Otf4	POU domain, class 5, transcription factor 1	protein-coding	0.015000	0.592040			-15(AGATGCATAACAAAGG,-,0.00)
merged_common-241	chr13	84348170	84348370	+	-0.37372	NA	Intergenic	Intergenic	125974	NM_001361908	72745	Mm.295063	NM_175187	ENSMUSG00000035762	Tmem161b	2810446P07Rik|AI843389	transmembrane protein 161B	protein-coding	0.030000	0.601990		34(CATGCATATGCAGA,+,0.00),34(CATGCATATGCAGA,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-119	chr12	54702220	54702420	+	-0.37372	NA	Intergenic	RLTR21|LTR|ERVK	-6426	NM_001331162	66266	Mm.156440	NM_025456	ENSMUSG00000054302	Eapp	1810011O16Rik	E2F-associated phosphoprotein	protein-coding	0.000000	0.333333		17(TATGAATATGTATG,+,0.00),17(TATGAATATGTATG,-,0.00),57(TATATATATGCATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1996	chr5	125389836	125390036	+	-0.37372	NA	promoter-TSS (NM_019639)	promoter-TSS (NM_019639)	81	NM_019639	22190	Mm.331	NM_019639	ENSMUSG00000008348	Ubc	2700054O04Rik|AI194771|Rps27a|TI-225|Uba52|Ubb	ubiquitin C	protein-coding	0.095000	0.601990			
merged_common-155	chr11	76217413	76217613	+	-0.37372	NA	promoter-TSS (NM_021294)	promoter-TSS (NM_021294)	59	NM_177367	276919	Mm.482713	NM_177367	ENSMUSG00000049396	Gemin4	4932415L08Rik|AU015359	gem nuclear organelle associated protein 4	protein-coding	0.110000	0.726368			
merged_common-586	chr4	57163428	57163628	+	-0.37372	NA	Intergenic	Intergenic	-8543	NR_040669	329851	Mm.392470	NR_040669	ENSMUSG00000085967	Gm12530	D730003B17	predicted gene 12530	ncRNA	0.015000	0.447761			-17(ATTAGCATGTCAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2370	chr8	43418486	43418686	+	-0.37372	NA	Intergenic	(TATATG)n|Simple_repeat|Simple_repeat	109551	NM_001009547	382007	Mm.55952	NM_001009547	ENSMUSG00000063900	Adam26b	-	a disintegrin and metallopeptidase domain 26B	protein-coding	0.000000	0.288557	-86(AATGAAATATTCATG,+,0.00),-86(AATGAAATATTCATG,-,0.00)	-31(TATGCATATGTACA,+,0.00),-31(TATGCATATGTACA,-,0.00),-7(TATGCATATGTATG,+,0.00),-7(TATGCATATGTATG,-,0.00)	-14(ACATATTTATGCATAT,+,0.00)
merged_common-407	chr18	49923791	49923991	+	-0.37372	NA	intron (NM_001081371, intron 33 of 42)	intron (NM_001081371, intron 33 of 42)	-55536	NM_001177759	106869	Mm.27740	NM_134131	ENSMUSG00000062210	Tnfaip8	AA987150|E130304C20Rik|Gg2-1|Gm10539|Nded|Ssc-2|Tipe	tumor necrosis factor, alpha-induced protein 8	protein-coding	0.005000	0.393035		-10(CATGCATATGCACA,+,0.00),-10(CATGCATATGCACA,-,0.00)	-17(CCTTTGACATGCATAT,+,0.00)
merged_common-770	chr8	10990196	10990396	+	-0.37372	NA	intron (NM_001081212, intron 1 of 1)	intron (NM_001081212, intron 1 of 1)	-17554	NR_046017	619321	Mm.403007	NR_046017	ENSMUSG00000096938	9530052E02Rik	-	RIKEN cDNA 9530052E02 gene	ncRNA	0.000000	0.348259		-78(GATGAATATTGATT,+,0.00),-78(GATGAATATTGATT,-,0.00)	-67(ATTTGCATGACAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1574	chr3	52381987	52382187	+	-0.37372	NA	Intergenic	Intergenic	113750	NM_019739	56458	Mm.29891	NM_019739	ENSMUSG00000044167	Foxo1	AI876417|Afxh|FKHR|Fkhr1|Foxo1a	forkhead box O1	protein-coding	0.005000	0.338308			
merged_common-693	chr6	40471305	40471505	+	-0.37372	NA	promoter-TSS (NM_212468)	promoter-TSS (NM_212468)	-10	NM_028358	381760	Mm.276356	NM_028358	ENSMUSG00000029911	Ssbp1	2810480P10Rik|G630031O20Rik|MtSSB|mtDBP	single-stranded DNA binding protein 1	protein-coding	0.105000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-1028	chr16	79589062	79589262	+	-0.37372	NA	Intergenic	Intergenic	-410214	NM_030146	78654		NM_030146		1700066C05Rik	-	RIKEN cDNA 1700066C05 gene	protein-coding	0.000000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-2397	chr8	68157364	68157564	+	-0.37372	NA	Intergenic	Intergenic	-119064	NM_028182	72281	Mm.40974	NM_028182	ENSMUSG00000053886	Sh2d4a	2210402M20Rik|SH2A	SH2 domain containing 4A	protein-coding	0.000000	0.442786			
Oct4_nocontrol_ChIP_peaks_unique-311	chr2	103187050	103187250	+	-0.37372	NA	Intergenic	Intergenic	113475	NM_019735	56369	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	0.005000	0.487562			
merged_common-196	chr12	34528844	34529044	+	-0.37372	NA	promoter-TSS (NM_024124)	promoter-TSS (NM_024124)	-55	NM_024124	79221	Mm.310551	NM_024124	ENSMUSG00000004698	Hdac9	AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744	histone deacetylase 9	protein-coding	0.015000	0.477612			-13(ATTTGCATATGAATCA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-586	chr12	83632113	83632313	+	-0.37372	NA	promoter-TSS (NM_027349)	promoter-TSS (NM_027349)	-30	NM_001364416	67039	Mm.46005	NM_027349	ENSMUSG00000010608	Rbm25	2600011C06Rik|2610015J01Rik|A130095G20Rik|AI159652|AL023075|AU043498|RNPC7	RNA binding motif protein 25	protein-coding	0.075000	0.597015			
ePOU_nocontrol_ChIP_peaks_unique-2006	chr5	136403586	136403786	+	-0.37372	NA	intron (NM_001291233, intron 3 of 23)	intron (NM_001291233, intron 3 of 23)	-27883	NR_030500	723975		NR_030500	ENSMUSG00000106479	Mir721	Mirn721|miRY|mir-721|mmu-mir-721	microRNA 721	ncRNA	0.070000	0.601990			
ePOU_nocontrol_ChIP_peaks_unique-655	chr13	39166391	39166591	+	-0.37372	NA	Intergenic	Intergenic	-205612	NM_001170431	108652	Mm.255506	NM_134060	ENSMUSG00000021432	Slc35b3	4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2	solute carrier family 35, member B3	protein-coding	0.010000	0.338308			-88(ATTTCCAAGGCAATCA,-,0.00),51(ATTAGACTAACAAAGA,-,0.00)
merged_common-464	chr2	34681685	34681885	+	-0.37372	NA	intron (NR_151469, intron 24 of 26)	intron (NR_151469, intron 24 of 26)	73447	NM_001356441	66691	Mm.156452	NM_025709	ENSMUSG00000026867	Gapvd1	2010005B09Rik|4432404J10Rik|AW108497|Gapex-5|RAP6|RME-6|mKIAA1521	GTPase activating protein and VPS9 domains 1	protein-coding	0.000000	0.303483			
ePOU_nocontrol_ChIP_peaks_unique-565	chr12	70853220	70853420	+	-0.37372	NA	intron (NM_028127, intron 1 of 13)	intron (NM_028127, intron 1 of 13)	27806	NM_028127	319710	Mm.2962	NM_028127	ENSMUSG00000048285	Frmd6	2610019M19Rik|4930488L10Rik|AW212977|Willin	FERM domain containing 6	protein-coding	0.020000	0.502488	54(CATGCATTATTCATG,+,0.00),54(CATGCATTATTCATG,-,0.00)		
merged_common-746	chr7	88735832	88736032	+	-0.37372	NA	Intergenic	Intergenic	305659	NM_028238	72433	Mm.276669	NM_028238	ENSMUSG00000030559	Rab38	2310011F14Rik|AU043391|cht	RAB38, member RAS oncogene family	protein-coding	0.000000	0.333333			17(TCATTGTTATGCTATT,+,0.00)
merged_common-645	chr5	77200275	77200475	+	-0.37372	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	10830	NM_001289767	69982	Mm.46106	NM_183284	ENSMUSG00000053030	Spink2	1700007F22Rik|AV038945|HUSI-II	serine peptidase inhibitor, Kazal type 2	protein-coding	0.005000	0.353234		-43(CATATATATGCATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1613	chr3	83582728	83582928	+	-0.37372	NA	Intergenic	Intergenic	-8710	NR_036591	69460	Mm.389464	NR_036591	ENSMUSG00000101334	1700028M03Rik	-	RIKEN cDNA 1700028M03 gene	ncRNA	0.005000	0.383085			-41(TTTCTTTCATGCTTAT,+,0.00)
merged_common-747	chr7	89560923	89561123	+	-0.37372	NA	Intergenic	Intergenic	-33836	NM_001360752	76453	Mm.250438	NM_029614	ENSMUSG00000039405	Prss23	2310046G15Rik|4930479H08Rik|AI790574|Spuve	protease, serine 23	protein-coding	0.000000	0.422886			
Oct4_nocontrol_ChIP_peaks_unique-335	chr2	172765441	172765641	+	-0.37372	NA	Intergenic	LTR37A|LTR|ERV1	174780	NM_007557	12162	Mm.595	NM_007557	ENSMUSG00000008999	Bmp7	OP1	bone morphogenetic protein 7	protein-coding	0.010000	0.407960			
merged_common-168	chr11	99427829	99428029	+	-0.37372	NA	TTS (NM_023256)	TTS (NM_023256)	-5670	NM_010661	268482	Mm.436651	NM_010661	ENSMUSG00000020912	Krt12	AI835216|K12|Krt-12|Krt1-12	keratin 12	protein-coding	0.000000	0.328358			-40(ATTAGCATGAGAAATA,-,0.00),48(CCATTTTCATGTATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1519	chr2	166996325	166996525	+	-0.37372	NA	promoter-TSS (NM_011490)	promoter-TSS (NM_011490)	-126	NM_001109905	20853	Mm.73276	NM_011490	ENSMUSG00000039536	Stau1	5830401L18Rik|AW549911|C85792|Stau	staufen double-stranded RNA binding protein 1	protein-coding	0.080000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-2014	chr5	142629390	142629590	+	-0.37372	NA	promoter-TSS (NM_178398)	promoter-TSS (NM_178398)	-94	NM_178398	74781	Mm.29432	NM_178398	ENSMUSG00000029578	Wipi2	1110018O08Rik|2510001I10Rik	WD repeat domain, phosphoinositide interacting 2	protein-coding	0.150000	0.721393			
merged_common-622	chr4	152177957	152178157	+	-0.37372	NA	promoter-TSS (NM_133348)	promoter-TSS (NM_133348)	-43	NM_133348	70025	Mm.296191	NM_133348	ENSMUSG00000028937	Acot7	2410041A17Rik|Ach1|Act|Bach|CTE-IIa|Cte-II|Lach1	acyl-CoA thioesterase 7	protein-coding	0.150000	0.786070			
ePOU_nocontrol_ChIP_peaks_unique-2251	chr7	87186825	87187025	+	-0.37372	NA	Intergenic	Intergenic	-59724	NM_001285835	50490	Mm.31748	NM_015760	ENSMUSG00000030562	Nox4	AI648021	NADPH oxidase 4	protein-coding	0.005000	0.373134			1(TGGTTGTCATGGTAAT,+,0.00),54(ATTTCCATTAAAATAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-711	chr13	97724636	97724836	+	-0.37372	NA	Intergenic	MER5A|DNA|hAT-Charlie	22675	NR_152141	403201	Mm.110162	NR_152140		5330416C01Rik	Gm532	RIKEN cDNA 5330416C01 gene	ncRNA	0.025000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-138	chr1	160212866	160213066	+	-0.37372	NA	promoter-TSS (NM_009786)	promoter-TSS (NM_009786)	-74	NM_009786	12301	Mm.10702	NM_009786	ENSMUSG00000014226	Cacybp	SIP	calcyclin binding protein	protein-coding	0.110000	0.641791			
merged_common-324	chr16	24641342	24641542	+	-0.37372	NA	intron (NM_178665, intron 5 of 12)	intron (NM_178665, intron 5 of 12)	-80413	NM_001145954	210126	Mm.209385	NM_178665	ENSMUSG00000033306	Lpp	9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16	LIM domain containing preferred translocation partner in lipoma	protein-coding	0.010000	0.363184			
merged_common-625	chr4_GL456216_random	16965	17165	+	-0.40403	NA	intron (NM_001368262, intron 1 of 5)	CpG	907	NM_001368261	236082	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.085000	0.572139		-38(CATGAATATGCATG,+,0.00),-38(CATGAATATGCATG,-,0.00),54(CATGAGTATTCATG,+,0.00),54(CATGAGTATTCATG,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-485	chr7	116443321	116443521	+	-0.41749	NA	promoter-TSS (NM_011083)	promoter-TSS (NM_011083)	37	NM_011083	18704	Mm.3810	NM_011083	ENSMUSG00000030660	Pik3c2a	Cpk-m|PI3KC2	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha	protein-coding	0.105000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-2475	chr8	128208753	128208953	+	-0.41749	NA	Intergenic	Intergenic	69372	NR_105822	102465212		NR_105822	ENSMUSG00000099326	Mir21c	Gm28013|mmu-mir-21c	microRNA 21c	ncRNA	0.000000	0.383085		32(TCTGCATATGTATA,+,0.00),32(TCTGCATATGTATA,-,0.00)	
merged_common-89	chr10	25918215	25918415	+	-0.41749	NA	Intergenic	Intergenic	-80878	NR_045349	73803	Mm.258921	NR_045349	ENSMUSG00000112444	4930401C15Rik	-	RIKEN cDNA 4930401C15 gene	ncRNA	0.005000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-2190	chr7	25754698	25754898	+	-0.41749	NA	promoter-TSS (NM_144922)	promoter-TSS (NM_144922)	-39	NM_001360789	232989	Mm.254223	NM_144922	ENSMUSG00000040725	Hnrnpul1	E130317O14Rik|E1B-AP5|E1BAP5|Hnrnpul|Hnrpul1	heterogeneous nuclear ribonucleoprotein U-like 1	protein-coding	0.085000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-1083	chr17	28195919	28196119	+	-0.41749	NA	intron (NM_172617, intron 5 of 14)	RCHARR1|DNA|hAT-Charlie	-11759	NM_027185	23853	Mm.204731	NM_027185	ENSMUSG00000002257	Def6	2410003F05Rik|6430538D02Rik|AV094905|Ibp|Slat|Slat2|Slat6	differentially expressed in FDCP 6	protein-coding	0.015000	0.427861			3(ATAAGAATCATAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-991	chr16	33714493	33714693	+	-0.41749	NA	intron (NM_175256, intron 2 of 14)	L4_C_Mam|LINE|RTE-X	30127	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.030000	0.522388			
ePOU_nocontrol_ChIP_peaks_unique-167	chr1	180568830	180569030	+	-0.41749	NA	promoter-TSS (NM_007415)	promoter-TSS (NM_007415)	39	NM_007415	11545	Mm.277779	NM_007415	ENSMUSG00000026496	Parp1	5830444G22Rik|AI893648|ARTD1|Adprp|Adprt1|C80510|PARP|PPOL|msPARP|parp-1|sPARP-1	poly (ADP-ribose) polymerase family, member 1	protein-coding	0.120000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-1346	chr2	21205895	21206095	+	-0.41749	NA	promoter-TSS (NM_027728)	promoter-TSS (NM_027728)	271	NM_001362773	208967	Mm.268841	NM_177588	ENSMUSG00000048550	Thnsl1	AW413632	threonine synthase-like 1 (bacterial)	protein-coding	0.075000	0.631841			
Oct4_nocontrol_ChIP_peaks_unique-135	chr13	20041149	20041349	+	-0.41749	NA	Intergenic	Intergenic	-49258	NM_080288	140580	Mm.342392	NM_080288	ENSMUSG00000041112	Elmo1	6330578D22Rik|C230095H21Rik|CED-12	engulfment and cell motility 1	protein-coding	0.010000	0.437811			
Oct4_nocontrol_ChIP_peaks_unique-226	chr16	28964127	28964327	+	-0.41749	NA	Intergenic	Intergenic	-34529	NM_177718	239796	Mm.155887	NM_177718	ENSMUSG00000051065	Mb21d2	1600021P15Rik|A430031N04|C87006	Mab-21 domain containing 2	protein-coding	0.015000	0.472637			
merged_common-170	chr11	101442069	101442269	+	-0.41749	NA	promoter-TSS (NM_011289)	promoter-TSS (NM_011289)	-76	NM_011289	19942	Mm.340658	NM_011289	ENSMUSG00000063316	Rpl27	-	ribosomal protein L27	protein-coding	0.040000	0.547264			
ePOU_nocontrol_ChIP_peaks_unique-520	chr12	32567982	32568182	+	-0.41749	NA	Intergenic	Intergenic	189293	NM_001162903	72123	Mm.341352	NM_028111	ENSMUSG00000090946	Ccdc71l	2010109K11Rik|AV375874	coiled-coil domain containing 71 like	protein-coding	0.015000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-1053	chr17	10361470	10361670	+	-0.41749	NA	Intergenic	Intergenic	36968	NR_045461	76634	Mm.491052	NR_045461	ENSMUSG00000099384	1700110C19Rik	-	RIKEN cDNA 1700110C19 gene	ncRNA	0.005000	0.288557			
merged_common-400	chr18	37935489	37935689	+	-0.41749	NA	promoter-TSS (NM_007858)	promoter-TSS (NM_007858)	-113	NM_001305981	13367	Mm.195916	NM_007858	ENSMUSG00000024456	Diaph1	D18Wsu154e|Dia1|Diap1|Drf1|p140mDia	diaphanous related formin 1	protein-coding	0.100000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-2167	chr6	143960440	143960640	+	-0.41749	NA	intron (NM_001113559, intron 7 of 13)	intron (NM_001113559, intron 7 of 13)	-13434	NM_001347506	20678	Mm.1752	NM_011444	ENSMUSG00000041540	Sox5	A730017D01Rik|AI528773	SRY (sex determining region Y)-box 5	protein-coding	0.030000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-1032	chr16	84735056	84735256	+	-0.41749	NA	exon (NM_017404, exon 1 of 10)	exon (NM_017404, exon 1 of 10)	146	NM_017404	27393	Mm.103655	NM_017404	ENSMUSG00000022889	Mrpl39	C21orf8|MRP-L5|ORF22|Rpml5	mitochondrial ribosomal protein L39	protein-coding	0.085000	0.646766			
merged_common-863	chrX	103848090	103848290	+	-0.41749	NA	Intergenic	Intergenic	-26202	NM_009197	20502	Mm.388973	NM_009197	ENSMUSG00000033965	Slc16a2	AW105741|Mct8|Xpct	solute carrier family 16 (monocarboxylic acid transporters), member 2	protein-coding	0.000000	0.323383			23(TCATTGTTATGCAAAA,+,0.00)
merged_common-859	chrX	94302263	94302463	+	-0.41749	NA	Intergenic	Intergenic	27789	NR_106133	102466238		NR_106133	ENSMUSG00000099072	Mir7673	Gm27569|mmu-mir-7673	microRNA 7673	ncRNA	0.005000	0.368159			
merged_common-632	chr5	24685796	24685996	+	-0.41749	NA	promoter-TSS (NM_016736)	promoter-TSS (NM_016736)	81	NM_001305264	53312	Mm.5856	NM_016736	ENSMUSG00000028954	Nub1	4931404D21Rik|6330412F12Rik|BS4|NY-REN-18	negative regulator of ubiquitin-like proteins 1	protein-coding	0.110000	0.691542			
Oct4_nocontrol_ChIP_peaks_unique-170	chr14	25694090	25694290	+	-0.41749	NA	promoter-TSS (NM_134084)	promoter-TSS (NM_134084)	20	NM_134084	105675	Mm.41656	NM_134084	ENSMUSG00000021868	Ppif	AW457192|CyP-D|CyP-F|CypD|PPIase	peptidylprolyl isomerase F (cyclophilin F)	protein-coding	0.145000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-1827	chr4	117120412	117120612	+	-0.41749	NA	non-coding (NR_024078, exon 7 of 7)	non-coding (NR_024078, exon 7 of 7)	5213	NR_024078	78611	Mm.446227	NM_001033187		Btbd19	9530048O09Rik|BB115071	BTB (POZ) domain containing 19	ncRNA	0.055000	0.537313			
merged_common-449	chr2	14000748	14000948	+	-0.41749	NA	Intergenic	MurERV4_19-int|LTR|ERVK	55187	NM_001012396	30963	Mm.241205	NM_013935	ENSMUSG00000063275	Hacd1	Ptpla	3-hydroxyacyl-CoA dehydratase 1	protein-coding	0.000000	0.353234		-51(GCTGCATATGTATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-48	chr1	62678641	62678841	+	-0.41749	NA	Intergenic	Intergenic	-24576	NM_001077407	18187	Mm.266341	NM_010939	ENSMUSG00000025969	Nrp2	1110048P06Rik|Np-2|Np2|Npn-2|Npn2	neuropilin 2	protein-coding	0.000000	0.507463			-4(CCTTAGCCATTCAGAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-227	chr16	33056480	33056680	+	-0.41749	NA	promoter-TSS (NM_021338)	promoter-TSS (NM_021338)	66	NM_021338	57808	Mm.19355	NM_021338	ENSMUSG00000060636	Rpl35a	2810431L15Rik|Rpl35	ribosomal protein L35A	protein-coding	0.060000	0.621891			
Oct4_nocontrol_ChIP_peaks_unique-239	chr16	89774602	89774802	+	-0.41749	NA	Intergenic	Intergenic	43650	NM_001145887	21844	Mm.310902	NM_009384	ENSMUSG00000002489	Tiam1	AI847750|D16Ium10|D16Ium10e	T cell lymphoma invasion and metastasis 1	protein-coding	0.030000	0.452736			
merged_common-499	chr2	125344596	125344796	+	-0.41749	NA	intron (NM_007993, intron 38 of 65)	intron (NM_007993, intron 38 of 65)	97181	NM_023595	110074	Mm.282499	NM_023595	ENSMUSG00000027203	Dut	5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase	deoxyuridine triphosphatase	protein-coding	0.000000	0.388060			-32(ATTTACATAATAATTT,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-333	chr2	163658542	163658742	+	-0.41749	NA	5' UTR (NM_001164053, exon 1 of 4)	5' UTR (NM_001164053, exon 1 of 4)	184	NM_001164053	18769	Mm.10091	NM_011106	ENSMUSG00000035268	Pkig	PKIgamma	protein kinase inhibitor, gamma	protein-coding	0.100000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-891	chr15	68258494	68258694	+	-0.41749	NA	intron (NR_152182, intron 1 of 13)	CpG	262	NR_152182	380993	Mm.309526	NM_198644	ENSMUSG00000022335	Zfat	Gm922|Zfat1|Zfp406	zinc finger and AT hook domain containing	protein-coding	0.160000	0.766169			
ePOU_nocontrol_ChIP_peaks_unique-1493	chr2	147772574	147772774	+	-0.41749	NA	Intergenic	(TATG)n|Simple_repeat|Simple_repeat	61981	NR_046014	381384	Mm.259809	NR_046014	ENSMUSG00000051986	A530006G24Rik	Gm1003	RIKEN cDNA A530006G24 gene	ncRNA	0.000000	0.358209		19(CATACATTTGCATA,+,0.00),56(TAGGCATATGCATA,+,0.00),56(TAGGCATATGCATA,-,0.00)	24(ATTTGCATAACAAGCA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-183	chr1	189761720	189761920	+	-0.41749	NA	intron (NM_008976, intron 1 of 18)	intron (NM_008976, intron 1 of 18)	33552	NM_008976	19250	Mm.4498	NM_008976	ENSMUSG00000026604	Ptpn14	C130080N23Rik|PTP36	protein tyrosine phosphatase, non-receptor type 14	protein-coding	0.005000	0.437811			23(TTCTTCTTTTGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-775	chr14	49066283	49066483	+	-0.41749	NA	promoter-TSS (NM_144535)	promoter-TSS (NM_144535)	-166	NM_144535	74385	Mm.379235	NM_144535	ENSMUSG00000036291	Ap5m1	4932432K03Rik|Mu5|Mudeng	adaptor-related protein complex 5, mu 1 subunit	protein-coding	0.155000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-2011	chr5	139325743	139325943	+	-0.41749	NA	promoter-TSS (NM_172723)	promoter-TSS (NM_172723)	-379	NM_172723	231821	Mm.297819	NM_172723	ENSMUSG00000056413	Adap1	4930431P11Rik|Centa1|GC1L|p42IP4	ArfGAP with dual PH domains 1	protein-coding	0.020000	0.472637			65(GCATTTCTTTTCAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-539	chr9	86275904	86276104	+	-0.41749	NA	Intergenic	Intergenic	188912	NM_027394	70348	Mm.53469	NM_027394	ENSMUSG00000032415	Ube2cbp	2610018I03Rik|Ube3d	ubiquitin-conjugating enzyme E2C binding protein	protein-coding	0.010000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-2270	chr7	100706254	100706454	+	-0.41749	NA	promoter-TSS (NM_001362169)	promoter-TSS (NM_001362169)	-281	NM_178764	319604	Mm.260362	NM_178764	ENSMUSG00000029461	Fam168a	2610030B18Rik|B930006L02Rik|mKIAA0280	family with sequence similarity 168, member A	protein-coding	0.030000	0.542289			
merged_common-188	chr12	14089122	14089322	+	-0.41749	NA	Intergenic	Intergenic	62816	NM_029007	105005	Mm.227253	NM_029007	ENSMUSG00000020607	Lratd1	2310003N02Rik|4731402F03Rik|AW125753|Fam84a|Nse1	LRAT domain containing 1	protein-coding	0.005000	0.457711			-77(TTTTTGTCATGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-38	chr1	57808302	57808502	+	-0.41749	NA	intron (NM_001368787, intron 2 of 13)	intron (NM_001368787, intron 2 of 13)	33541	NM_001368787	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.010000	0.378109			-96(CTTTTATCATGCATTT,+,0.00)
merged_common-28	chr1	84035268	84035468	+	-0.41749	NA	TTS (NM_001003948)	TTS (NM_001003948)	183593	NR_105771	102465181		NR_105771	ENSMUSG00000098851	Mir6353	Gm27391|mmu-mir-6353	microRNA 6353	ncRNA	0.000000	0.402985			
merged_common-735	chr7	49448697	49448897	+	-0.41749	NA	intron (NM_001111016, intron 7 of 38)	intron (NM_001111016, intron 7 of 38)	188038	NM_001005232	13172	Mm.307176	NM_001005232	ENSMUSG00000030507	Dbx1	AI426026|Dbx	developing brain homeobox 1	protein-coding	0.000000	0.492537			0(ATATACATGAGAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2272	chr7	109875239	109875439	+	-0.41749	NA	Intergenic	Intergenic	-9660	NM_020052	56788	Mm.40447	NM_020052	ENSMUSG00000007279	Scube2	4932442O19Rik|Cegf1|Cegp1	signal peptide, CUB domain, EGF-like 2	protein-coding	0.000000	0.383085		-44(CATGAATATGCATC,+,0.00),-44(CATGAATATGCATC,-,0.00),-1(AATGAATATGCATA,+,0.00),-1(AATGAATATGCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2241	chr7	79983370	79983570	+	-0.41749	NA	Intergenic	B2_Mm2|SINE|B2	-41344	NM_001146000	209225	Mm.290925	NM_175433	ENSMUSG00000048897	Zfp710	5430400N05Rik|9830165K13|AI324798|Znf710	zinc finger protein 710	protein-coding	0.000000	0.378109			48(ATTATAATAATAAAAG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-121	chr12	75818700	75818900	+	-0.41749	NA	intron (NM_001005510, intron 1 of 115)	CpG	482	NM_001005510	319565	Mm.26652	NM_001005510	ENSMUSG00000063450	Syne2	6820443O06Rik|AW546258|Cpfl8|D12Ertd777e|KASH2|NUA|Nesp2g|dice|mKIAA1011	spectrin repeat containing, nuclear envelope 2	protein-coding	0.115000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-1018	chr16	65351237	65351437	+	-0.41749	NA	Intergenic	Intergenic	-169175	NM_008849	18736	Mm.355440	NM_008849	ENSMUSG00000004842	Pou1f1	GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf	POU domain, class 1, transcription factor 1	protein-coding	0.005000	0.333333			23(AGTTGCAAGGCAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1194	chr18	42059842	42060042	+	-0.41749	NA	intron (NM_172966, intron 1 of 7)	intron (NM_172966, intron 1 of 7)	6232	NM_172966	269016	Mm.45472	NM_172966	ENSMUSG00000057719	Sh3rf2	2310046K19|9130023G24Rik|AI452083|Ppp1r39|RNF158	SH3 domain containing ring finger 2	protein-coding	0.010000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-2526	chr9	56180441	56180641	+	-0.41749	NA	Intergenic	Intergenic	-19471	NM_019793	56434	Mm.28484	NM_019793	ENSMUSG00000032324	Tspan3	1700055K04Rik|TM4-A|Tm4sf8	tetraspanin 3	protein-coding	0.005000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-1760	chr4	54532134	54532334	+	-0.41749	NA	Intergenic	Intergenic	-415711	NM_172867	242466	Mm.102904	NM_172867	ENSMUSG00000060206	Zfp462	6030417H05|9430078C22Rik|Gt4-2|Zfpip|Znf462	zinc finger protein 462	protein-coding	0.000000	0.402985			-10(CCATTGTTATGCACAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2268	chr7	99483457	99483657	+	-0.41749	NA	promoter-TSS (NR_002172)	promoter-TSS (NR_002172)	152	NM_012052	27050	Mm.236868	NM_012052	ENSMUSG00000030744	Rps3	D7Ertd795e|Rs_3	ribosomal protein S3	protein-coding	0.090000	0.636816			
Oct4_nocontrol_ChIP_peaks_unique-145	chr13	44758661	44758861	+	-0.41749	NA	intron (NM_021878, intron 2 of 18)	(TC)n|Simple_repeat|Simple_repeat	27490	NM_001360281	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.005000	0.393035			-24(ATATTCTCATTGATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2092	chr6	61168364	61168564	+	-0.41749	NA	Intergenic	ERVL-int|LTR|ERVL	-11861	NM_001164316	232035	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	0.010000	0.437811			28(CTTAACATCACAATCC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-857	chr15	36401105	36401305	+	-0.41749	NA	Intergenic	MLT1D|LTR|ERVL-MaLR	95529	NM_001358006	68839	Mm.396537	NM_175134	ENSMUSG00000048307	Ankrd46	1110054N06Rik|AI314978|AI987733	ankyrin repeat domain 46	protein-coding	0.015000	0.472637			
merged_common-703	chr6	83506575	83506775	+	-0.41749	NA	intron (NR_149734, intron 1 of 6)	intron (NR_149734, intron 1 of 6)	294	NR_149734	27369	Mm.42234	NM_013764	ENSMUSG00000014554	Dguok	dGK|dGK1|dGK2|dGK3	deoxyguanosine kinase	protein-coding	0.040000	0.616915			
merged_common-5	chr1	26687401	26687601	+	-0.41749	NA	promoter-TSS (NM_001033764)	promoter-TSS (NM_001033764)	-41	NM_001033764	210940	Mm.297614	NM_001033764	ENSMUSG00000073722	4931408C20Rik	-	RIKEN cDNA 4931408C20 gene	protein-coding	0.000000	0.527363			
merged_common-785	chr8	53600423	53600623	+	-0.41749	NA	intron (NM_146208, intron 7 of 9)	intron (NM_146208, intron 7 of 9)	38542	NM_146208	234258	Mm.281749	NM_146208	ENSMUSG00000039396	Neil3	AI449477|BC034753|C85903	nei like 3 (E. coli)	protein-coding	0.005000	0.323383	72(ATTGAATAATTCATT,+,0.00),72(ATTGAATAATTCATT,-,0.00)		-93(ATTTTAATAACAAGGG,-,0.00),51(ATCTGCATAAAACAAA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-261	chr18	55721873	55722073	+	-0.41749	NA	Intergenic	MER58B|DNA|hAT-Charlie	-678367	NM_001360917	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.015000	0.348259			
merged_common-81	chr10	5104101	5104301	+	-0.41749	NA	intron (NM_001079686, intron 31 of 54)	intron (NM_001079686, intron 31 of 54)	-35138	NM_022027	64009	Mm.331626	NM_022027	ENSMUSG00000096054	Syne1	8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1	spectrin repeat containing, nuclear envelope 1	protein-coding	0.000000	0.293532			
merged_common-316	chr16	8715955	8716155	+	-0.41749	NA	intron (NM_001003918, intron 2 of 30)	intron (NM_001003918, intron 2 of 30)	22287	NM_001003918	252870	Mm.295330	NM_001003918	ENSMUSG00000022710	Usp7	2210010O09Rik|AA409944|AA617399|AU019296|AW548146|C80752|Hausp	ubiquitin specific peptidase 7	protein-coding	0.000000	0.368159		78(TATACATAAGCATA,+,0.00)	-18(ACTTTGGCTTGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2160	chr6	134928378	134928578	+	-0.41749	NA	promoter-TSS (NR_037956)	promoter-TSS (NR_037956)	-614	NR_037956	381822	Mm.5935	NR_037955	ENSMUSG00000098318	Lockd	1190002F15Rik|AI120476|Droc	lncRNA downstream of Cdkn1b	ncRNA	0.115000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-583	chr12	81882455	81882655	+	-0.41749	NA	intron (NM_018814, intron 1 of 35)	intron (NM_018814, intron 1 of 35)	22525	NM_018814	54604	Mm.86584	NM_018814	ENSMUSG00000021140	Pcnx	2900024E21Rik|3526401J03Rik|AF096286|AI327143|AI413187|Pcnx1|Pcnxl1	pecanex homolog	protein-coding	0.005000	0.298507			62(GCATTGTAATTCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1953	chr5	90931304	90931504	+	-0.41749	NA	exon (NM_026788, exon 1 of 8)	exon (NM_026788, exon 1 of 8)	208	NM_026788	665563	Mm.153030	NM_026788	ENSMUSG00000029376	Mthfd2l	1110019K23Rik|C630010D07Rik	methylenetetrahydrofolate dehydrogenase (NADP+ dependent) 2-like	protein-coding	0.180000	0.830846			
merged_common-91	chr10	29002852	29003052	+	-0.41749	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-16646	NM_026336	67719	Mm.440480	NM_026336	ENSMUSG00000015519	2310057J18Rik	2210414P04Rik|Leg1	RIKEN cDNA 2310057J18 gene	protein-coding	0.000000	0.343284		15(CATACATATGCATA,+,0.00),15(CATACATATGCATA,-,0.00),21(TATGCATATGTATG,+,0.00),21(TATGCATATGTATG,-,0.00),31(TATGTATATGTATG,+,0.00),31(TATGTATATGTATG,-,0.00),41(TATGCATATATATG,-,0.00),51(TATGTATATGTATG,+,0.00),51(TATGTATATGTATG,-,0.00),61(TATGCATATGTATG,+,0.00),61(TATGCATATGTATG,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-130	chr12	110696416	110696616	+	-0.41749	NA	promoter-TSS (NM_010480)	promoter-TSS (NM_010480)	-121	NM_010480	15519	Mm.1843	NM_010480	ENSMUSG00000021270	Hsp90aa1	86kDa|89kDa|AL024080|AL024147|Hsp86-1|Hsp89|Hsp90|Hspca|hsp4	heat shock protein 90, alpha (cytosolic), class A member 1	protein-coding	0.180000	0.786070			
ePOU_nocontrol_ChIP_peaks_unique-1774	chr4	70307339	70307539	+	-0.41749	NA	intron (NM_145990, intron 14 of 36)	intron (NM_145990, intron 14 of 36)	102996	NM_001313762	214444	Mm.370777	NM_145990	ENSMUSG00000039298	Cdk5rap2	2900018K03Rik|an|mKIAA1633	CDK5 regulatory subunit associated protein 2	protein-coding	0.005000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-141	chr1	163511372	163511572	+	-0.41749	NA	Intergenic	Intergenic	-107803	NM_001313738	98376	Mm.32901	NM_178883	ENSMUSG00000040124	Gorab	NTKL-BP1|SCYL1-BP1|Scyl1bp1	golgin, RAB6-interacting	protein-coding	0.005000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-489	chr11	117358324	117358524	+	-0.41749	NA	intron (NM_001113486, intron 10 of 11)	intron (NM_001113486, intron 10 of 11)	26111	NM_001113488	53860	Mm.38450	NM_017380	ENSMUSG00000059248	Sept9	MSF1|Msf|PNUTL4|Sint1	septin 9	protein-coding	0.015000	0.532338			
ePOU_nocontrol_ChIP_peaks_unique-1233	chr18	74778826	74779026	+	-0.41749	NA	promoter-TSS (NR_028560)	promoter-TSS (NR_028560)	-286	NM_177470	52538	Mm.245724	NM_177470	ENSMUSG00000036880	Acaa2	0610011L04Rik|AI255831|AI265397|D18Ertd240e	acetyl-Coenzyme A acyltransferase 2 (mitochondrial 3-oxoacyl-Coenzyme A thiolase)	protein-coding	0.050000	0.666667			
merged_common-822	chr9	24388048	24388248	+	-0.41749	NA	Intergenic	Intergenic	114992	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.000000	0.383085			-13(GCATTGTCATGCAGAC,+,0.00),65(CTTTTTTTTTTTAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-173	chr14	30479524	30479724	+	-0.41749	NA	promoter-TSS (NM_133761)	promoter-TSS (NM_133761)	59	NM_133761	75901	Mm.28733	NM_133761	ENSMUSG00000021962	Dcp1a	1110066A22Rik|4930568L04Rik|AU019772|D14Ertd817e|Mitc1|SMIF	decapping mRNA 1A	protein-coding	0.055000	0.611940			
Oct4_nocontrol_ChIP_peaks_unique-367	chr3	142836223	142836423	+	-0.41749	NA	intron (NM_178654, intron 3 of 21)	intron (NM_178654, intron 3 of 21)	45681	NM_178654	109333	Mm.244236	NM_178654	ENSMUSG00000004591	Pkn2	6030436C20Rik|AI507382|PRK2|Prkcl2|Stk7	protein kinase N2	protein-coding	0.000000	0.333333			
merged_common-125	chr10	128303330	128303530	+	-0.41749	NA	promoter-TSS (NM_001358822)	promoter-TSS (NM_001358822)	95	NM_001252326	103135	Mm.244183	NM_133992	ENSMUSG00000005682	Pan2	1200014O24Rik|AI047843|AW742773|Usp52|mKIAA0710	PAN2 poly(A) specific ribonuclease subunit	protein-coding	0.060000	0.532338			
ePOU_nocontrol_ChIP_peaks_unique-964	chr16	17921975	17922175	+	-0.41749	NA	Intergenic	CpG	6144	NM_153150	13358	Mm.229291	NM_153150	ENSMUSG00000003528	Slc25a1	1300019P08Rik|2610100G11Rik|AI194714|Ctp|Dgsj|Slc20a3	solute carrier family 25 (mitochondrial carrier, citrate transporter), member 1	protein-coding	0.095000	0.626866			
merged_common-691	chr6	39223896	39224096	+	-0.41749	NA	Intergenic	RSINE1|SINE|B4	-17223	NM_001033430	338523	Mm.293175	NM_001033430	ENSMUSG00000042599	Kdm7a	A630082K20Rik|BB041802|Jhdm1d|mKIAA1718	lysine (K)-specific demethylase 7A	protein-coding	0.005000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-1743	chr4	40757554	40757754	+	-0.41749	NA	intron (NM_021535, intron 1 of 11)	CpG	231	NM_021535	74255	Mm.289929	NM_021535	ENSMUSG00000028409	Smu1	2600001O03Rik|2610203K23Rik|AB044414|AI845086|AW556129|Bwd	smu-1 suppressor of mec-8 and unc-52 homolog (C. elegans)	protein-coding	0.120000	0.736318			
ePOU_nocontrol_ChIP_peaks_unique-1414	chr2	90745398	90745598	+	-0.41749	NA	promoter-TSS (NM_018828)	promoter-TSS (NM_018828)	-60	NM_018828	55935	Mm.489638	NM_018828	ENSMUSG00000008200	Fnbp4	FBP30|Fnbp30|mKIAA1014	formin binding protein 4	protein-coding	0.125000	0.641791		18(CATGAATATTGATT,+,0.00),18(CATGAATATTGATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1703	chr3	143288893	143289093	+	-0.41749	NA	Intergenic	Intergenic	45938	NR_040551	320072	Mm.136397	NR_040551	ENSMUSG00000105923	A830019L24Rik	-	RIKEN cDNA A830019L24 gene	ncRNA	0.010000	0.318408		12(TCTGCATATTCAAA,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-543	chr9	97046511	97046711	+	-0.41749	NA	Intergenic	RSINE1|SINE|B4	-28256	NM_145134	211949	Mm.491271	NM_145134	ENSMUSG00000046997	Spsb4	D030068E18Rik|SSB-4|Ssb4	splA/ryanodine receptor domain and SOCS box containing 4	protein-coding	0.020000	0.388060			-92(TTTTTTTCTTTTTAAT,+,0.00),-58(TTATTGTGATGCACAC,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2561	chr9	81723998	81724198	+	-0.41749	NA	Intergenic	Intergenic	-90266	NM_010482	15551	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	5-HT-1B	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0.005000	0.363184			40(TCATTGTCATGCAAAA,+,0.00)
merged_common-224	chr13	21851834	21852034	+	-0.41749	NA	Intergenic	Intergenic	18191	NM_001110555	665622	Mm.471247	NM_001110555	ENSMUSG00000069303	Hist1h2br	Gm11277	histone cluster 1 H2br	protein-coding	0.005000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-1432	chr2	105048255	105048455	+	-0.41749	NA	Intergenic	Intergenic	-31328	NM_145380	98221	Mm.379278	NM_145380	ENSMUSG00000027170	Eif3m	Ga17|Pcid1|Tango7	eukaryotic translation initiation factor 3, subunit M	protein-coding	0.010000	0.517413			
merged_common-249	chr13	109710518	109710718	+	-0.41749	NA	intron (NM_011056, intron 3 of 16)	intron (NM_011056, intron 3 of 16)	-193191	NR_035442	100316683		NR_035442	ENSMUSG00000084651	Mir1904	Mirn1904|mmu-mir-1904	microRNA 1904	ncRNA	0.005000	0.323383		27(TATGAATATGTAAA,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-347	chr3	58576982	58577182	+	-0.41749	NA	intron (NM_001040396, intron 1 of 5)	CpG	446	NM_001040396	69227	Mm.270950	NM_001040396	ENSMUSG00000075700	Selenot	2810407C02Rik|5730408P04Rik|Selt	selenoprotein T	protein-coding	0.170000	0.805970			
ePOU_nocontrol_ChIP_peaks_unique-352	chr11	20741387	20741587	+	-0.41749	NA	promoter-TSS (NM_001252503)	promoter-TSS (NM_001252503)	69	NM_181411	216549	Mm.356580	NM_181411	ENSMUSG00000049659	Aftph	-	aftiphilin	protein-coding	0.110000	0.731343			
ePOU_nocontrol_ChIP_peaks_unique-254	chr10	68279772	68279972	+	-0.41749	NA	Intergenic	Intergenic	-1146	NM_023598	71371	Mm.440357	NM_023598	ENSMUSG00000019947	Arid5b	4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta	AT rich interactive domain 5B (MRF1-like)	protein-coding	0.020000	0.417910			
merged_common-141	chr11	36458720	36458920	+	-0.41749	NA	intron (NM_011856, intron 2 of 28)	intron (NM_011856, intron 2 of 28)	-478293	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra	WW, C2 and coiled-coil domain containing 1	protein-coding	0.015000	0.368159			-46(CTTTCCATAACACTGA,-,0.00),-16(ATATTATCATGCAAAT,+,0.00)
merged_common-684	chr6	24632963	24633163	+	-0.41749	NA	exon (NM_001167745, exon 5 of 5)	exon (NM_001167745, exon 5 of 5)	31932	NM_028459	73178	Mm.1574	NM_028459	ENSMUSG00000029684	Wasl	2900021I12Rik|3110031I02Rik|N-WASP	Wiskott-Aldrich syndrome-like (human)	protein-coding	0.025000	0.527363			
Oct4_nocontrol_ChIP_peaks_unique-186	chr14	78420328	78420528	+	-0.41749	NA	Intergenic	Intergenic	102274	NM_001346784	219181	Mm.89413	NM_001164503	ENSMUSG00000022016	Akap11	6330501D17Rik|AKAP220|Gm80|PRKA11|mKIAA0629	A kinase (PRKA) anchor protein 11	protein-coding	0.005000	0.417910			-78(GCTTTGACATGTTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1149	chr17	87265873	87266073	+	-0.41749	NA	promoter-TSS (NM_139295)	promoter-TSS (NM_139295)	-26	NM_176808	193813	Mm.30251	NM_139295	ENSMUSG00000024150	Mcfd2	1810021C21Rik|F5f8d|Lman1ip|Sdnsf	multiple coagulation factor deficiency 2	protein-coding	0.120000	0.746269			
ePOU_nocontrol_ChIP_peaks_unique-952	chr16	10411978	10412178	+	-0.41749	NA	exon (NM_011955, exon 2 of 11)	exon (NM_011955, exon 2 of 11)	140	NM_011955	26425	Mm.29037	NM_011955	ENSMUSG00000022503	Nubp1	-	nucleotide binding protein 1	protein-coding	0.100000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-2464	chr8	121829592	121829792	+	-0.41749	NA	promoter-TSS (NM_145605)	promoter-TSS (NM_145605)	-123	NM_145605	234825	Mm.209329	NM_145605	ENSMUSG00000040263	Klhdc4	AA408426|AV352552|BC012312|G430025P05Rik	kelch domain containing 4	protein-coding	0.070000	0.592040			
ePOU_nocontrol_ChIP_peaks_unique-2150	chr6	119472188	119472388	+	-0.41749	NA	intron (NM_009525, intron 1 of 4)	ERVL-int|LTR|ERVL	-5077	NM_001271758	22419	Mm.321818	NM_009525	ENSMUSG00000030170	Wnt5b	AW545702|Wnt-5b	wingless-type MMTV integration site family, member 5B	protein-coding	0.015000	0.492537			
Oct4_nocontrol_ChIP_peaks_unique-451	chr6	116788018	116788218	+	-0.41749	NA	Intergenic	L1MA6|LINE|L1	-71360	NM_178768	319776	Mm.133120	NM_178768	ENSMUSG00000048108	Tmem72	C230095G01Rik	transmembrane protein 72	protein-coding	0.015000	0.313433			-15(ATATTTTCCTGTAAAT,+,0.00),47(TTTTTCTTATCCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1891	chr5	13547535	13547735	+	-0.41749	NA	intron (NM_001243072, intron 7 of 17)	intron (NM_001243072, intron 7 of 17)	148326	NM_009152	20346	Mm.372039	NM_009152	ENSMUSG00000028883	Sema3a	Hsema-I|SEMA1|SemD|Semad|coll-1	sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A	protein-coding	0.010000	0.487562			
merged_common-401	chr18	38131282	38131482	+	-0.41749	NA	Intergenic	MER2|DNA|TcMar-Tigger	78380	NM_029357	75599	Mm.36560	NM_029357	ENSMUSG00000051375	Pcdh1	2010005A06Rik|AI585920	protocadherin 1	protein-coding	0.015000	0.373134			
Oct4_nocontrol_ChIP_peaks_unique-511	chr8	82678002	82678202	+	-0.41749	NA	Intergenic	Intergenic	96043	NM_001368343	30932	Mm.269248	NM_145600	ENSMUSG00000031711	Zfp330	BC008086|Noa36|Znf330	zinc finger protein 330	protein-coding	0.000000	0.368159	-6(AATGCATATTACATA,-,0.00)		
merged_common-682	chr6	22262083	22262283	+	-0.41749	NA	Intergenic	Intergenic	-26044	NM_053116	93735	Mm.137403	NM_053116	ENSMUSG00000029671	Wnt16	E130309I19Rik	wingless-type MMTV integration site family, member 16	protein-coding	0.005000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-2219	chr7	58844384	58844584	+	-0.41749	NA	Intergenic	Intergenic	186282	NM_009728	11982	Mm.135129	NM_009728	ENSMUSG00000025324	Atp10a	Atp10c|pfatp	ATPase, class V, type 10A	protein-coding	0.015000	0.388060		2(CTTGAATATACATA,+,0.00),12(CATACATATGCATA,+,0.00),12(CATACATATGCATA,-,0.00)	-36(CTTTGAATAAGAATAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-496	chr11	120549593	120549793	+	-0.41749	NA	promoter-TSS (NM_001033231)	promoter-TSS (NM_001033231)	34	NM_001033231	192173	Mm.262300	NM_001033231	ENSMUSG00000061111	Mcrip1	Fam195b	MAPK regulated corepressor interacting protein 1	protein-coding	0.185000	0.796020			
ePOU_nocontrol_ChIP_peaks_unique-907	chr15	79062846	79063046	+	-0.41749	NA	promoter-TSS (NM_144849)	promoter-TSS (NM_144849)	-87	NM_144849	223690	Mm.24262	NM_144849	ENSMUSG00000033055	Ankrd54	C730048E16Rik|EST1068184|EST475269|Liar	ankyrin repeat domain 54	protein-coding	0.080000	0.606965			
merged_common-480	chr2	72600690	72600890	+	-0.41749	NA	Intergenic	Intergenic	-102720	NR_040503	74541	Mm.410774	NR_040503	ENSMUSG00000085252	8430437L04Rik	-	RIKEN cDNA 8430437L04 gene	ncRNA	0.000000	0.432836			
Oct4_nocontrol_ChIP_peaks_unique-134	chr13	4155444	4155644	+	-0.41749	NA	Intergenic	RLTR25A|LTR|ERVK	-4898	NM_001346535	105349	Mm.41337	NM_134066	ENSMUSG00000021214	Akr1c18	AW146047	aldo-keto reductase family 1, member C18	protein-coding	0.000000	0.378109			-87(CTTAGAAAGAGAATAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2124	chr6	97806796	97806996	+	-0.41749	NA	promoter-TSS (NM_001113198)	promoter-TSS (NM_001113198)	-162	NM_001113198	17342	Mm.333284	NM_008601	ENSMUSG00000035158	Mitf	BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit	melanogenesis associated transcription factor	protein-coding	0.040000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-366	chr11	35788471	35788671	+	-0.41749	NA	3' UTR (NM_145962, exon 7 of 7)	3' UTR (NM_145962, exon 7 of 7)	6175	NR_029754	723824		NR_029754	ENSMUSG00000065553	Mir103-1	Mirn103-1|mir-103-1	microRNA 103-1	ncRNA	0.005000	0.472637			62(ATATGCATGATAATTG,-,0.00)
merged_common-393	chr18	22409529	22409729	+	-0.41749	NA	intron (NM_001167777, intron 3 of 12)	intron (NM_001167777, intron 3 of 12)	64540	NM_001167777	211961	Mm.392310	NM_001167777	ENSMUSG00000045215	Asxl3	C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945	additional sex combs like 3, transcriptional regulator	protein-coding	0.005000	0.358209			72(TCATTGTAATGTAGAT,+,0.00)
merged_common-233	chr13	44705438	44705638	+	-0.41749	NA	Intergenic	Intergenic	-25236	NM_021878	16468	Mm.25059	NM_021878	ENSMUSG00000038518	Jarid2	Jmj|jumonji	jumonji, AT rich interactive domain 2	protein-coding	0.025000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-633	chr13	17838386	17838586	+	-0.41749	NA	Intergenic	Intergenic	-33389	NM_001081058	69562	Mm.193924	NM_027118	ENSMUSG00000041297	Cdk13	2310015O17Rik|Cdc2l5	cyclin-dependent kinase 13	protein-coding	0.015000	0.447761			
merged_common-355	chr17	17374258	17374458	+	-0.41749	NA	promoter-TSS (NM_025934)	promoter-TSS (NM_025934)	26	NM_025934	67045	Mm.35117	NM_025934	ENSMUSG00000116564	Riok2	2010110K24Rik|2410085M17Rik	RIO kinase 2	protein-coding	0.035000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-2472	chr8	125558965	125559165	+	-0.41749	NA	intron (NM_001357372, intron 1 of 21)	intron (NM_001357372, intron 1 of 21)	10798	NM_001357372	244668	Mm.271668	NM_001081337	ENSMUSG00000001995	Sipa1l2	BC058408|mKIAA1389	signal-induced proliferation-associated 1 like 2	protein-coding	0.015000	0.402985			
Oct4_nocontrol_ChIP_peaks_unique-372	chr4	10874343	10874543	+	-0.41749	NA	promoter-TSS (NM_026005)	promoter-TSS (NM_026005)	-55	NM_026005	67157	Mm.440552	NM_026005	ENSMUSG00000059482	2610301B20Rik	AI428449	RIKEN cDNA 2610301B20 gene	protein-coding	0.165000	0.786070			
ePOU_nocontrol_ChIP_peaks_unique-678	chr13	63431526	63431726	+	-0.41749	NA	5' UTR (NM_001282942, exon 1 of 14)	5' UTR (NM_001282942, exon 1 of 14)	119	NM_001042673	14088	Mm.126106	NM_007985	ENSMUSG00000021461	Fancc	Facc	Fanconi anemia, complementation group C	protein-coding	0.090000	0.621891			
Oct4_nocontrol_ChIP_peaks_unique-316	chr2	119972411	119972611	+	-0.41749	NA	promoter-TSS (NM_011941)	promoter-TSS (NM_011941)	-188	NM_011941	26390	Mm.330501	NM_011941	ENSMUSG00000033902	Mapkbp1	2810483F24Rik|AW123212|JNKBP-1|Jnkbp1|mKIAA0596	mitogen-activated protein kinase binding protein 1	protein-coding	0.090000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-2467	chr8	123992449	123992649	+	-0.41749	NA	Intergenic	Intergenic	-9427	NM_019552	56199	Mm.274243	NM_019552	ENSMUSG00000031974	Abcb10	Abc-me|Abcb12	ATP-binding cassette, sub-family B (MDR/TAP), member 10	protein-coding	0.005000	0.412935			-5(TTTAGAATAACAAATA,-,0.00)
merged_common-306	chr15	79690668	79690868	+	-0.41749	NA	promoter-TSS (NM_013818)	promoter-TSS (NM_013818)	-128	NM_013818	14904	Mm.19080	NM_013818	ENSMUSG00000042535	Gtpbp1	AL022987|AW045683|C85212|GP-1|Gtpbp	GTP binding protein 1	protein-coding	0.050000	0.472637	-81(CATTAATTATTCATT,+,0.00),-81(CATTAATTATTCATT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1913	chr5	33652330	33652530	+	-0.41749	NA	TTS (NM_001356983)	TTS (NM_001356983)	144	NM_001289725	20492	Mm.4172	NM_009193	ENSMUSG00000004642	Slbp	-	stem-loop binding protein	protein-coding	0.130000	0.686567			
Oct4_nocontrol_ChIP_peaks_unique-425	chr5	129670062	129670262	+	-0.41749	NA	promoter-TSS (NM_172462)	promoter-TSS (NM_172462)	-74	NM_172462	22648	Mm.135067	NM_172462	ENSMUSG00000051034	Zfp11	6720465D24|Krox-6|Zfp-11	zinc finger protein 11	protein-coding	0.085000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-210	chr10	24830495	24830695	+	-0.41749	NA	intron (NM_134005, intron 2 of 24)	intron (NM_134005, intron 2 of 24)	5600	NM_134005	209558	Mm.338425	NM_134005	ENSMUSG00000019989	Enpp3	AI876438|CD203c	ectonucleotide pyrophosphatase/phosphodiesterase 3	protein-coding	0.020000	0.417910			
merged_common-438	chr19	42129897	42130097	+	-0.41749	NA	Intergenic	Intergenic	-1004	NM_027106	69534	Mm.30060	NM_027106	ENSMUSG00000018821	Avpi1	2310008N12Rik|AA410041|VIT32|esu|mVIT32	arginine vasopressin-induced 1	protein-coding	0.010000	0.427861		3(TATGAATAGGCATT,+,0.00),3(TATGAATAGGCATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-846	chr15	19390205	19390405	+	-0.41749	NA	Intergenic	Intergenic	204932	NR_155419	102639102	Mm.463245	NR_155419	ENSMUSG00000115803	Gm35496	-	predicted gene, 35496	ncRNA	0.010000	0.407960			
Oct4_nocontrol_ChIP_peaks_unique-255	chr18	35138087	35138287	+	-0.41749	NA	intron (NM_009818, intron 1 of 17)	Eulor9A|DNA|DNA	19275	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.005000	0.358209			-34(ATTTGCATTTAAATGA,-,0.00),80(CCATTGTGTTGTAAAT,+,0.00)
merged_common-659	chr5	114514042	114514242	+	-0.41749	NA	Intergenic	Intergenic	-54109	NM_001004180	433940	Mm.194212	NM_001004180	ENSMUSG00000041930	Fam222a	-	family with sequence similarity 222, member A	protein-coding	0.020000	0.497512	-56(ATTGAATAATTGATG,+,0.00),-56(ATTGAATAATTGATG,-,0.00)		-39(ATTTGAATAACACTAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2406	chr8	71922758	71922958	+	-0.41749	NA	promoter-TSS (NM_133358)	promoter-TSS (NM_133358)	33	NM_133358	170938	Mm.480419	NM_133358	ENSMUSG00000066880	Zfp617	Zfps11-6	zinc finger protein 617	protein-coding	0.075000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-1714	chr3	157741807	157742007	+	-0.41749	NA	Intergenic	RLTR13D1|LTR|ERVK	175015	NM_011196	19218	Mm.30424	NM_011196	ENSMUSG00000040016	Ptger3	EP3|Pgerep3|Ptgerep3	prostaglandin E receptor 3 (subtype EP3)	protein-coding	0.000000	0.412935	-2(CATGAATAATGCAAC,+,0.00),-2(CATGAATAATGCAAC,-,0.00)		
merged_common-31	chr1	84728331	84728531	+	-0.41749	NA	intron (NM_133975, intron 36 of 40)	intron (NM_133975, intron 36 of 40)	-32210	NM_152915	227325	Mm.292560	NM_152915	ENSMUSG00000036766	Dner	A930026D19Rik|BET|Bret	delta/notch-like EGF repeat containing	protein-coding	0.005000	0.328358			
merged_common-173	chr11	106272849	106273049	+	-0.41749	NA	promoter-TSS (NM_001130187)	promoter-TSS (NM_001130187)	23	NM_001130187	83796	Mm.21772	NM_031878	ENSMUSG00000078619	Smarcd2	AW322457|Baf60b	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 2	protein-coding	0.085000	0.686567			
ePOU_nocontrol_ChIP_peaks_unique-970	chr16	22429007	22429207	+	-0.41749	NA	intron (NM_001358428, intron 5 of 12)	intron (NM_001358428, intron 5 of 12)	9261	NM_001358428	104156	Mm.155708	NM_023794	ENSMUSG00000013089	Etv5	1110005E01Rik|8430401F14Rik|ERM	ets variant 5	protein-coding	0.015000	0.552239			
ePOU_nocontrol_ChIP_peaks_unique-503	chr12	3243740	3243940	+	-0.41749	NA	intron (NR_015551, intron 5 of 6)	intron (NR_015551, intron 5 of 6)	8049	NR_015551	74173	Mm.309774	NM_028796	ENSMUSG00000079179	Rab10os	1700012B15Rik|1810036A22Rik	RAB10, member RAS oncogene family, opposite strand	ncRNA	0.000000	0.253731		34(TTTTCATATGCATA,+,0.00),40(TATGCATATTTAAA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2132	chr6	102463025	102463225	+	-0.41749	NA	intron (NM_008779, intron 1 of 21)	intron (NM_008779, intron 1 of 21)	1542	NM_008779	18488	Mm.435479	NM_008779	ENSMUSG00000030075	Cntn3	Pang	contactin 3	protein-coding	0.010000	0.313433			
merged_common-583	chr4	52264596	52264796	+	-0.41749	NA	Intergenic	Intergenic	174268	NR_045175	72648	Mm.391869	NR_045175	ENSMUSG00000085763	Smc2os	2700081L22Rik	structural maintenance of chromosomes 2, opposite strand	ncRNA	0.005000	0.343284			
Oct4_nocontrol_ChIP_peaks_unique-162	chr13	111098480	111098680	+	-0.41749	NA	Intergenic	ERV3-16A3_I-int|LTR|ERVL	130851	NR_045908	73129	Mm.417826	NR_045908	ENSMUSG00000114824	3110015C05Rik	-	RIKEN cDNA 3110015C05 gene	ncRNA	0.020000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-1915	chr5	33820136	33820336	+	-0.41749	NA	Intergenic	CpG	-22876	NM_001177884	107823	Mm.19892	NM_175231	ENSMUSG00000057406	Nsd2	5830445G22Rik|9430010A17Rik|AW555663|C130020C13Rik|D030027O06Rik|D930023B08Rik|MMSET|Whsc1|Whsc1l|mKIAA1090	nuclear receptor binding SET domain protein 2	protein-coding	0.160000	0.766169			
ePOU_nocontrol_ChIP_peaks_unique-710	chr13	97668657	97668857	+	-0.41749	NA	Intergenic	Intergenic	78654	NR_152141	403201	Mm.110162	NR_152140		5330416C01Rik	Gm532	RIKEN cDNA 5330416C01 gene	ncRNA	0.000000	0.338308		40(CATGCATATGCATG,+,0.00),40(CATGCATATGCATG,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-125	chr12	91551919	91552119	+	-0.41749	NA	Intergenic	Intergenic	37630	NM_031391	83602	Mm.275728	NM_031391	ENSMUSG00000020962	Gtf2a1	6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1	general transcription factor II A, 1	protein-coding	0.030000	0.432836			
merged_common-814	chr8	121950448	121950648	+	-0.41749	NA	promoter-TSS (NM_001285983)	promoter-TSS (NM_001285983)	56	NM_001285981	53325	Mm.287163	NM_016812	ENSMUSG00000025316	Banp	AA408158|SMAR1	BTG3 associated nuclear protein	protein-coding	0.125000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-2077	chr6	50527019	50527219	+	-0.41749	NA	Intergenic	Intergenic	39450	NM_007808	13063	Mm.35389	NM_007808	ENSMUSG00000063694	Cycs	-	cytochrome c, somatic	protein-coding	0.000000	0.422886			34(CCTTTGTTATGTAAAG,+,0.00)
merged_common-521	chr3	32736903	32737103	+	-0.41749	NA	promoter-TSS (NM_025316)	promoter-TSS (NM_025316)	-60	NM_025316	66046	Mm.28058	NM_025316	ENSMUSG00000027673	Ndufb5	0610007D05Rik|AU015782|CI-SGDH|SGDH	NADH:ubiquinone oxidoreductase subunit B5	protein-coding	0.065000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-2422	chr8	83442337	83442537	+	-0.41749	NA	5' UTR (NM_019708, exon 1 of 4)	5' UTR (NM_019708, exon 1 of 4)	225	NM_019708	56367	Mm.246911	NM_019708	ENSMUSG00000063253	Scoc	0610011C06Rik|2810002J11Rik|AA415030|SCOCO	short coiled-coil protein	protein-coding	0.125000	0.751244			
ePOU_nocontrol_ChIP_peaks_unique-2093	chr6	61504131	61504331	+	-0.41749	NA	intron (NM_183310, intron 5 of 10)	RLTR46B|LTR|ERVK	-323421	NR_040287	100504262	Mm.438066	NR_040287		A730020E08Rik	-	RIKEN cDNA A730020E08 gene	ncRNA	0.030000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-500	chr11	120990980	120991180	+	-0.41749	NA	5' UTR (NM_027874, exon 1 of 10)	5' UTR (NM_027874, exon 1 of 10)	253	NM_139059	104318	Mm.216227	NM_027874	ENSMUSG00000025162	Csnk1d	1200006A05Rik|AA409348|D930010H05Rik	casein kinase 1, delta	protein-coding	0.135000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-1141	chr17	79865100	79865300	+	-0.41749	NA	intron (NM_001286647, intron 1 of 12)	intron (NM_001286647, intron 1 of 12)	30923	NM_019717	56298	Mm.175403	NM_019717	ENSMUSG00000059811	Atl2	2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2	atlastin GTPase 2	protein-coding	0.015000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-990	chr16	33380767	33380967	+	-0.41749	NA	promoter-TSS (NM_011749)	promoter-TSS (NM_011749)	92	NM_011749	22661	Mm.392667	NM_011749	ENSMUSG00000022811	Zfp148	2210405J08Rik|AI480666|AW045217|BERF-1|BFCOL1|ZBP-89|Znf148	zinc finger protein 148	protein-coding	0.085000	0.686567			
Oct4_nocontrol_ChIP_peaks_unique-256	chr18	42511303	42511503	+	-0.41749	NA	promoter-TSS (NM_001289526)	promoter-TSS (NM_001289526)	-84	NM_001289526	56070	Mm.270511	NM_001039474	ENSMUSG00000024498	Tcerg1	2410022J09Rik|2900090C16Rik|AI428505|CA150b|FBP23|FBP28|Taf2s|ca150|p144	transcription elongation regulator 1 (CA150)	protein-coding	0.070000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-306	chr10	109664933	109665133	+	-0.41749	NA	Intergenic	Intergenic	335357	NM_001081035	260315	Mm.225050	NM_177797	ENSMUSG00000020181	Nav3	4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3	neuron navigator 3	protein-coding	0.025000	0.412935			-70(ATCAACATAACAAAAG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-99	chr11	105111683	105111883	+	-0.41749	NA	intron (NM_001081046, intron 8 of 9)	intron (NM_001081046, intron 8 of 9)	-14642	NM_172567	52686	Mm.270091	NM_172567	ENSMUSG00000020691	Mettl2	2810438F06Rik|AW493404|C130031G21Rik|D11Ertd768e|METL|PSENIP1	methyltransferase like 2	protein-coding	0.010000	0.373134			-46(CCTTTGTTATGTAATT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-183	chr14	75845512	75845712	+	-0.41749	NA	promoter-TSS (NR_045294)	promoter-TSS (NR_045294)	356	NM_009429	22070	Mm.297482	NM_009429	ENSMUSG00000060126	Tpt1	TCTP|Trt|p21|p23	tumor protein, translationally-controlled 1	protein-coding	0.145000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-884	chr15	61496990	61497190	+	-0.41749	NA	Intergenic	MER2|DNA|TcMar-Tigger	277361	NR_040350	432956	Mm.404918	NR_040350	ENSMUSG00000116031	D030024E09Rik	-	RIKEN cDNA D030024E09 gene	ncRNA	0.005000	0.298507			-24(ATTTACATAGCAATTG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2156	chr6	127336897	127337097	+	-0.41749	NA	Intergenic	Intergenic	-29030	NR_073373	232386	Mm.257367	NR_073373	ENSMUSG00000107153	Gm38404	D130058E03	predicted gene, 38404	ncRNA	0.010000	0.457711		-9(GATGCATATATATT,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-416	chr5	52834105	52834305	+	-0.41749	NA	promoter-TSS (NM_024213)	promoter-TSS (NM_024213)	70	NM_024213	52206	Mm.272568	NM_024213	ENSMUSG00000029176	Anapc4	2610306D21Rik|APC4|D5Ertd249e	anaphase promoting complex subunit 4	protein-coding	0.095000	0.681592			
Oct4_nocontrol_ChIP_peaks_unique-188	chr14	87416420	87416620	+	-0.41749	NA	promoter-TSS (NM_172605)	promoter-TSS (NM_172605)	-63	NM_001253755	219249	Mm.35168	NM_172605	ENSMUSG00000022019	Tdrd3	4732418C03Rik|6720468N18	tudor domain containing 3	protein-coding	0.140000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-1002	chr16	43335023	43335223	+	-0.41749	NA	intron (NM_181058, intron 2 of 6)	intron (NM_181058, intron 2 of 6)	85073	NR_046026	626693	Mm.447083	NR_046026	ENSMUSG00000085499	Gm15713	-	predicted gene 15713	ncRNA	0.015000	0.343284			-56(ATTTAAAAACCAAAGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-744	chr14	11502898	11503098	+	-0.41749	NA	Intergenic	Intergenic	-50555	NM_008981	19270	Mm.431266	NM_008981	ENSMUSG00000021745	Ptprg	5430405N12Rik|AW046354|AW549872|RPTPgamma	protein tyrosine phosphatase, receptor type, G	protein-coding	0.005000	0.318408			
ePOU_nocontrol_ChIP_peaks_unique-516	chr12	28635779	28635979	+	-0.41749	NA	promoter-TSS (NM_011300)	promoter-TSS (NM_011300)	74	NM_011300	20115	Mm.279839	NM_011300	ENSMUSG00000061477	Rps7	Mtu|Rps7A|S7	ribosomal protein S7	protein-coding	0.095000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-1925	chr5	41844228	41844428	+	-0.41749	NA	promoter-TSS (NM_001081422)	promoter-TSS (NM_001081422)	-13	NM_001081422	665775	Mm.158726	NM_001081422	ENSMUSG00000061755	Bod1l	A230054D04Rik|AI853319|FAM44A|mKIAA1327	biorientation of chromosomes in cell division 1-like	protein-coding	0.090000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-2302	chr7	122847321	122847521	+	-0.41749	NA	Intergenic	Intergenic	123038	NR_045614	73951	Mm.389936	NR_045614		4930413G21Rik	-	RIKEN cDNA 4930413G21 gene	ncRNA	0.005000	0.467662			12(TAATTATCATGCTTAG,+,0.00)
merged_common-371	chr17	63145249	63145449	+	-0.41749	NA	intron (NM_015794, intron 7 of 8)	intron (NM_015794, intron 7 of 8)	167624	NR_130176	414079	Mm.444282	NR_130176	ENSMUSG00000090565	4930405O22Rik	-	RIKEN cDNA 4930405O22 gene	ncRNA	0.010000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-2499	chr9	24316909	24317109	+	-0.41749	NA	TTS (NM_175678)	TTS (NM_175678)	186131	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.005000	0.442786			
merged_common-479	chr2	70914402	70914602	+	-0.41749	NA	Intergenic	Intergenic	-89022	NR_156421	228012	Mm.136511	NM_172664	ENSMUSG00000041997	Tlk1	4930545J15Rik	tousled-like kinase 1	protein-coding	0.020000	0.393035		-96(TTTAAATATGCATG,+,0.00),-96(TTTAAATATGCATG,-,0.00)	-80(ATATACATAGCAAATA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2489	chr9	18705578	18705778	+	-0.41749	NA	Intergenic	Intergenic	49955	NM_146606	18322	Mm.246530	NM_146606	ENSMUSG00000054141	Olfr24	MOR132-1|MTPCR51	olfactory receptor 24	protein-coding	0.000000	0.417910			22(ATGTGAATGAGAGAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-257	chr10	69872438	69872638	+	-0.41749	NA	intron (NM_146005, intron 10 of 42)	intron (NM_146005, intron 10 of 42)	-52994	NM_170687	11735	Mm.235960	NM_009670	ENSMUSG00000069601	Ank3	2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G	ankyrin 3, epithelial	protein-coding	0.005000	0.412935			
merged_common-320	chr16	18686887	18687087	+	-0.41749	NA	Intergenic	Intergenic	-57049	NM_213614	18951	Mm.20365	NM_213614	ENSMUSG00000072214	Sept5	Cdcrel-1|Cdcrel1|Pnutl1	septin 5	protein-coding	0.045000	0.552239			
Oct4_nocontrol_ChIP_peaks_unique-351	chr3	61268888	61269088	+	-0.41749	NA	Intergenic	Intergenic	-95519	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.000000	0.313433			
Oct4_nocontrol_ChIP_peaks_unique-127	chr12	98304257	98304457	+	-0.41749	NA	Intergenic	RLTR21|LTR|ERVK	35722	NM_008152	14744	Mm.378924	NM_008152	ENSMUSG00000021886	Gpr65	Dig1|Gpcr25|TDAG8	G-protein coupled receptor 65	protein-coding	0.000000	0.233831		-99(TGTGTATATGCATG,-,0.00),-89(CATGTATATGTATA,+,0.00),84(TGTGCATATGCATA,+,0.00),84(TGTGCATATGCATA,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-518	chr8	94917505	94917705	+	-0.41749	NA	intron (NM_001033533, intron 1 of 8)	CpG	493	NM_001033533	234582	Mm.277871	NM_001033533	ENSMUSG00000063605	Ccdc102a	BC027663|Gm586	coiled-coil domain containing 102A	protein-coding	0.095000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-1927	chr5	44436428	44436628	+	-0.41749	NA	Intergenic	L1MC5a|LINE|L1	-209922	NM_173764	231225	Mm.30688	NM_173764	ENSMUSG00000046985	Tapt1	4932414K18Rik	transmembrane anterior posterior transformation 1	protein-coding	0.010000	0.348259		-97(AATGAATAGTTATG,-,0.00)	-94(GAATAGTTATGTTAAT,+,0.00)
merged_common-200	chr12	44269127	44269327	+	-0.41749	NA	promoter-TSS (NM_026164)	promoter-TSS (NM_026164)	73	NM_026164	67452	Mm.54126	NM_026164	ENSMUSG00000036257	Pnpla8	1200006O19Rik|AI467579|Ipla2(gamma)	patatin-like phospholipase domain containing 8	protein-coding	0.130000	0.751244			
merged_common-855	chrUn_JH584304	59912	60112	+	-0.47824	NA	promoter-TSS (NR_003518)	promoter-TSS (NR_003518)	-323	NR_003518	66776	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.055000	0.606965			
merged_common-38	chr1	106171478	106171678	+	-0.48790	NA	promoter-TSS (NR_040630)	promoter-TSS (NR_040630)	-54	NR_040630	626049	Mm.247410	NR_040630	ENSMUSG00000101583	Gm20753	-	predicted gene, 20753	ncRNA	0.095000	0.611940		38(GATGCATATTCATG,+,0.00),38(GATGCATATTCATG,-,0.00)	
merged_common-567	chr3	145464353	145464553	+	-0.48790	NA	intron (NM_001317733, intron 37 of 59)	intron (NM_001317733, intron 37 of 59)	-111755	NM_001081094	229937	Mm.24586	NM_001081094	ENSMUSG00000074182	Znhit6	2410019A14Rik	zinc finger, HIT type 6	protein-coding	0.015000	0.358209			
merged_common-26	chr1	78657688	78657888	+	-0.48790	NA	promoter-TSS (NM_001136226)	promoter-TSS (NM_001136226)	-37	NM_001001981	195434	Mm.276016	NM_001001981	ENSMUSG00000079470	Utp14b	4932411L21Rik|jsd	UTP14B small subunit processome component	protein-coding	0.130000	0.716418			
merged_common-474	chr2	63012226	63012426	+	-0.49579	NA	intron (NM_133207, intron 2 of 15)	intron (NM_133207, intron 2 of 15)	171961	NM_133207	170738	Mm.242532	NM_133207	ENSMUSG00000059742	Kcnh7	9330137I11Rik|Kv11.3|erg3	potassium voltage-gated channel, subfamily H (eag-related), member 7	protein-coding	0.000000	0.393035			-33(TTGTGCATAACAATGT,-,0.00)
merged_common-668	chr5	131177261	131177461	+	-0.50762	NA	intron (NM_145218, intron 1 of 10)	intron (NM_145218, intron 1 of 10)	130161	NM_145218	212996	Mm.299204	NM_145218	ENSMUSG00000034040	Galnt17	AA388321|E330012B09Rik|Galnt19|Gcap8|Wbscr17	polypeptide N-acetylgalactosaminyltransferase 17	protein-coding	0.005000	0.437811			-1(TCATTGTTATGCAAAT,+,0.00),16(GCATTCCTATGCAAAA,+,0.00)
merged_common-412	chr18	58095227	58095427	+	-0.50762	NA	intron (NM_010181, intron 16 of 64)	intron (NM_010181, intron 16 of 64)	114599	NM_010181	14119	Mm.20271	NM_010181	ENSMUSG00000024598	Fbn2	BC063774|Fib-2|mKIAA4226|sne|sy	fibrillin 2	protein-coding	0.015000	0.368159			-35(ATTAGCATAACAATAG,-,0.00),72(ATTAAAATAACAATTT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-79	chr1	87355315	87355515	+	-0.52046	NA	intron (NM_146112, intron 3 of 28)	intron (NM_146112, intron 3 of 28)	28417	NM_001110212	227331	Mm.23065	NM_146112	ENSMUSG00000048000	Gigyf2	2610016F01Rik|A830080H02Rik|AI852361|AW259676|BC006835|Tnrc15|mKIAA0642	GRB10 interacting GYF protein 2	protein-coding	0.000000	0.273632			
ePOU_nocontrol_ChIP_peaks_unique-642	chr13	23684933	23685133	+	-0.52046	NA	TTS (NM_001290380)	TTS (NM_001290380)	834	NM_001290380	68024	Mm.261676	NM_023422	ENSMUSG00000018102	Hist1h2bc	2610022J01Rik|H2bfs|R74621	histone cluster 1, H2bc	protein-coding	0.010000	0.358209			
Oct4_nocontrol_ChIP_peaks_unique-95	chr11	98682422	98682622	+	-0.52046	NA	promoter-TSS (NM_009439)	promoter-TSS (NM_009439)	-32	NM_009439	22123	Mm.12194	NM_009439	ENSMUSG00000017221	Psmd3	AI255837|AntP91a|D11Bwg1349e|Psd3|Tstap91a	proteasome (prosome, macropain) 26S subunit, non-ATPase, 3	protein-coding	0.070000	0.587065			
Oct4_nocontrol_ChIP_peaks_unique-358	chr3	95111038	95111238	+	-0.52046	NA	promoter-TSS (NM_009336)	promoter-TSS (NM_009336)	96	NM_009336	21427	Mm.133919	NM_009336	ENSMUSG00000008958	Vps72	Tcfl1|YL-1	vacuolar protein sorting 72	protein-coding	0.065000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-1140	chr17	79285246	79285446	+	-0.52046	NA	Intergenic	Intergenic	69745	NM_026514	260409	Mm.140601	NM_026514	ENSMUSG00000036533	Cdc42ep3	3200001F04Rik|AA986861|Borg2|Cep3|UB1	CDC42 effector protein (Rho GTPase binding) 3	protein-coding	0.010000	0.477612			
Oct4_nocontrol_ChIP_peaks_unique-531	chr9	45984522	45984722	+	-0.52046	NA	promoter-TSS (NM_001357244)	promoter-TSS (NM_001357244)	-236	NM_001357239	18475	Mm.200859	NM_008775	ENSMUSG00000003131	Pafah1b2	2610005M20Rik|AI747451|AU021353|Pafahb|mus[b]	platelet-activating factor acetylhydrolase, isoform 1b, subunit 2	protein-coding	0.150000	0.800995			
ePOU_nocontrol_ChIP_peaks_unique-938	chr15	100066741	100066941	+	-0.52046	NA	intron (NM_001159361, intron 1 of 37)	intron (NM_001159361, intron 1 of 37)	28177	NM_001159361	239667	Mm.243658	NM_172819	ENSMUSG00000023026	Dip2b	4932422C22|AI317237|AI854602|mKIAA1463	disco interacting protein 2 homolog B	protein-coding	0.025000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-439	chr11	83271739	83271939	+	-0.52046	NA	Intergenic	Intergenic	14887	NM_001166028	237890	Mm.297670	NM_001166028	ENSMUSG00000082101	Slfn14	Gm20|Slfn14-ps	schlafen 14	protein-coding	0.025000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-400	chr11	59098419	59098619	+	-0.52046	NA	intron (NM_001171512, intron 16 of 103)	B2_Mm2|SINE|B2	37856	NM_001171512	380698	Mm.339542	NM_199152	ENSMUSG00000061462	Obscn	BC046431|Gm878|UNC89	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	protein-coding	0.005000	0.398010			-15(GATTTATTATGTACAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-514	chr12	26227599	26227799	+	-0.52046	NA	intron (NR_046278, intron 2 of 2)	intron (NR_046278, intron 2 of 2)	16432	NR_046278	74930	Mm.398932	NR_046278	ENSMUSG00000113115	4930480M12Rik	-	RIKEN cDNA 4930480M12 gene	ncRNA	0.030000	0.452736		36(CATACATTTGCATC,+,0.00)	-77(TGTCTGCCTTGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2015	chr5	142768017	142768217	+	-0.52046	NA	intron (NM_178242, intron 10 of 15)	MER20|DNA|hAT-Charlie	49545	NM_178242	231861	Mm.354649	NM_178242	ENSMUSG00000039477	Tnrc18	BC025631|EG381742|Zfp469	trinucleotide repeat containing 18	protein-coding	0.020000	0.517413			
ePOU_nocontrol_ChIP_peaks_unique-347	chr11	8635941	8636141	+	-0.52046	NA	intron (NM_001083587, intron 1 of 30)	intron (NM_001083587, intron 1 of 30)	28494	NM_001083587	319939	Mm.337820	NM_001083587	ENSMUSG00000020422	Tns3	BC023928|F830010I22Rik|TEM6|Tens1	tensin 3	protein-coding	0.000000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-1892	chr5	16823610	16823810	+	-0.52046	NA	Intergenic	Intergenic	269809	NM_001289461	15234	Mm.267078	NM_010427	ENSMUSG00000028864	Hgf	C230052L06Rik|HGF/SF|NK1|NK2|SF|SF/HGF	hepatocyte growth factor	protein-coding	0.005000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-2021	chr5	147069065	147069265	+	-0.52046	NA	intron (NM_080795, intron 1 of 9)	L1MB2|LINE|L1	7407	NM_080795	140887	Mm.272203	NM_080795	ENSMUSG00000016520	Lnx2	9630046H24|AW209022	ligand of numb-protein X 2	protein-coding	0.020000	0.502488			
ePOU_nocontrol_ChIP_peaks_unique-2485	chr9	14500523	14500723	+	-0.52046	NA	promoter-TSS (NM_023153)	promoter-TSS (NM_023153)	4	NM_023153	66070	Mm.245938	NM_023153	ENSMUSG00000004096	Cwc15	0610040D20Rik|2900052N06Rik|Ed1|c11orf5|mED1	CWC15 spliceosome-associated protein	protein-coding	0.055000	0.507463			
Oct4_nocontrol_ChIP_peaks_unique-22	chr1	118311032	118311232	+	-0.52046	NA	promoter-TSS (NR_153836)	promoter-TSS (NR_153836)	214	NM_011650	22099	Mm.426637	NM_011650	ENSMUSG00000026374	Tsn	2610034C24Rik|AU040286|C3PO|TB-RBP	translin	protein-coding	0.115000	0.666667			
merged_common-561	chr3	126166475	126166675	+	-0.52046	NA	Intergenic	Intergenic	-197277	NM_173451	271970	Mm.317021	NM_173451	ENSMUSG00000046561	Arsj	9330196J05Rik|D830047F08	arylsulfatase J	protein-coding	0.015000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-1777	chr4	76290271	76290471	+	-0.52046	NA	intron (NM_001368993, intron 2 of 29)	intron (NM_001368993, intron 2 of 29)	53872	NM_001352630	19266	Mm.184021	NM_011211	ENSMUSG00000028399	Ptprd	1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta	protein tyrosine phosphatase, receptor type, D	protein-coding	0.005000	0.422886			
merged_common-67	chr1	174979986	174980186	+	-0.52046	NA	Intergenic	L1MCa|LINE|L1	-58267	NM_011825	23893	Mm.25760	NM_011825	ENSMUSG00000050069	Grem2	Gremlin2|Prdc	gremlin 2, DAN family BMP antagonist	protein-coding	0.000000	0.298507			
ePOU_nocontrol_ChIP_peaks_unique-1448	chr2	116382720	116382920	+	-0.52046	NA	Intergenic	Intergenic	-306724	NR_033447	69974	Mm.440293	NR_033447		2810405F15Rik	-	RIKEN cDNA 2810405F15 gene	ncRNA	0.015000	0.333333			
Oct4_nocontrol_ChIP_peaks_unique-252	chr18	12918554	12918754	+	-0.52046	NA	intron (NM_207530, intron 4 of 27)	intron (NM_207530, intron 4 of 27)	23187	NM_207530	64291	Mm.259470	NM_020573	ENSMUSG00000044252	Osbpl1a	G430090F17Rik|Gm753|ORP-1|Osbpl1b	oxysterol binding protein-like 1A	protein-coding	0.005000	0.268657		-77(GATGAATATTTAGG,-,0.00)	-57(TTTTTCTGTTATAAAT,+,0.00),-28(ATATTATCATGTTGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1396	chr2	74123566	74123766	+	-0.52046	NA	Intergenic	Intergenic	184051	NR_040501	73962	Mm.50289	NR_040501	ENSMUSG00000085405	4930441J16Rik	Astx1a|Astx1b|Astx1c	RIKEN cDNA 4930441J16 gene	ncRNA	0.005000	0.402985			
merged_common-539	chr3	80506667	80506867	+	-0.52046	NA	Intergenic	Intergenic	296068	NR_152149	14800	Mm.220224	NM_013540	ENSMUSG00000033981	Gria2	GluA2|GluR-B|Glur-2|Glur2|gluR-K2	glutamate receptor, ionotropic, AMPA2 (alpha 2)	protein-coding	0.000000	0.293532			-99(TTATGCAAAACAATAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1435	chr2	106856633	106856833	+	-0.52046	NA	intron (NM_001356554, intron 4 of 6)	intron (NM_001356554, intron 4 of 6)	113658	NM_173750	212772	Mm.381231	NM_173750	ENSMUSG00000027122	Arl14ep	2700007P21Rik|4930448O08Rik|ARF7EP	ADP-ribosylation factor-like 14 effector protein	protein-coding	0.005000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-86	chr1	91106457	91106657	+	-0.52046	NA	intron (NM_001310732, intron 16 of 24)	RLTR17B_Mm|LTR|ERVK	-38546	NM_001033408	329207	Mm.295940	NM_001033408	ENSMUSG00000070732	Rbm44	Gm817	RNA binding motif protein 44	protein-coding	0.005000	0.343284		10(TATACATATACATA,-,0.00),20(CATACATATGCATA,+,0.00),20(CATACATATGCATA,-,0.00),26(TATGCATATATATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2240	chr7	79920494	79920694	+	-0.52046	NA	promoter-TSS (NM_009682)	promoter-TSS (NM_009682)	46	NM_009682	11778	Mm.220173	NM_009682	ENSMUSG00000063801	Ap3s2	[s]3B	adaptor-related protein complex 3, sigma 2 subunit	protein-coding	0.065000	0.552239			
ePOU_nocontrol_ChIP_peaks_unique-391	chr11	54438044	54438244	+	-0.52046	NA	promoter-TSS (NM_173753)	promoter-TSS (NM_173753)	-35	NM_173753	216742	Mm.34087	NM_173753	ENSMUSG00000035992	Fnip1	A730024A03Rik|AI838773|AW557298	folliculin interacting protein 1	protein-coding	0.115000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-1619	chr3	86710516	86710716	+	-0.52046	NA	intron (NM_030695, intron 47 of 56)	intron (NM_030695, intron 47 of 56)	-162333	NM_011839	23937	Mm.389466	NM_011839	ENSMUSG00000057777	Mab21l2	-	mab-21-like 2	protein-coding	0.000000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-1790	chr4	86041173	86041373	+	-0.52046	NA	Intergenic	Intergenic	-12642	NM_029967	77739	Mm.331690	NM_029967	ENSMUSG00000066113	Adamtsl1	5930437A14Rik|6720426B09Rik|ADAMTSL-1	ADAMTS-like 1	protein-coding	0.015000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-2215	chr7	45151178	45151378	+	-0.52046	NA	intron (NM_145954, intron 1 of 16)	intron (NM_145954, intron 1 of 16)	-3025	NM_001278207	68845	Mm.181689	NM_029406	ENSMUSG00000003423	Pih1d1	1110061L23Rik|4933413A04Rik|Nop17	PIH1 domain containing 1	protein-coding	0.010000	0.398010			-23(AAATTGTCATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-59	chr1	71102985	71103185	+	-0.52046	NA	promoter-TSS (NM_007525)	promoter-TSS (NM_007525)	-113	NM_007525	12021	Mm.10764	NM_007525	ENSMUSG00000026196	Bard1	-	BRCA1 associated RING domain 1	protein-coding	0.075000	0.626866			
ePOU_nocontrol_ChIP_peaks_unique-2513	chr9	45828387	45828587	+	-0.52046	NA	intron (NM_001081373, intron 1 of 29)	CpG	176	NM_001081373	214552	Mm.260103	NM_001081373	ENSMUSG00000043987	Cep164	AI450905|BC027092|D030051D21	centrosomal protein 164	protein-coding	0.075000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-1098	chr17	35969572	35969772	+	-0.52046	NA	promoter-TSS (NM_013854)	promoter-TSS (NM_013854)	78	NM_013854	224742	Mm.329022	NM_013854	ENSMUSG00000038762	Abcf1	AU041969|Abc50|D17Wsu166e|GCN20	ATP-binding cassette, sub-family F (GCN20), member 1	protein-coding	0.135000	0.736318			
Oct4_nocontrol_ChIP_peaks_unique-112	chr12	29896124	29896324	+	-0.52046	NA	intron (NM_001361657, intron 21 of 24)	intron (NM_001361657, intron 21 of 24)	-41812	NM_181395	69675	Mm.251774	NM_181395	ENSMUSG00000020674	Pxdn	2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230	peroxidasin	protein-coding	0.000000	0.383085			72(ATTTGAATCACAACAC,-,0.00)
merged_common-136	chr11	20968233	20968433	+	-0.52046	NA	Intergenic	Intergenic	-122991	NM_023324	67245	Mm.28957	NM_023324	ENSMUSG00000020134	Peli1	2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e	pellino 1	protein-coding	0.005000	0.298507			
ePOU_nocontrol_ChIP_peaks_unique-380	chr11	45766840	45767040	+	-0.52046	NA	Intergenic	ID_B1|SINE|B4	-41143	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.005000	0.472637			
Oct4_nocontrol_ChIP_peaks_unique-476	chr7	73539077	73539277	+	-0.52046	NA	TTS (NR_037569)	TTS (NR_037569)	2569	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.000000	0.313433			5(AAATGCATCACAATGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-34	chr1	55447923	55448123	+	-0.52046	NA	intron (NM_001114663, intron 1 of 5)	intron (NM_001114663, intron 1 of 5)	42077	NM_001114663	227120	Mm.194183	NM_001114663	ENSMUSG00000038349	Plcl1	C230017K02Rik|PLC-L|PLC-L1|PLCE|PLCL|PLDL1|PRIP|PRIP-1	phospholipase C-like 1	protein-coding	0.000000	0.407960			
Oct4_nocontrol_ChIP_peaks_unique-93	chr11	97715059	97715259	+	-0.52046	NA	TTS (NM_054051)	TTS (NM_054051)	11725	NM_011971	26446	Mm.21874	NM_011971	ENSMUSG00000069744	Psmb3	AL033320|C10-II	proteasome (prosome, macropain) subunit, beta type 3	protein-coding	0.010000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-1874	chr4	152297141	152297341	+	-0.52046	NA	promoter-TSS (NR_161303)	promoter-TSS (NR_161303)	27	NR_161302	57295	Mm.277464	NM_133788	ENSMUSG00000039662	Icmt	1700008E11Rik|C80758|Gm13095|HSTE14|PPMT|STE14|pcCMT	isoprenylcysteine carboxyl methyltransferase	protein-coding	0.140000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-1185	chr18	34759320	34759520	+	-0.52046	NA	promoter-TSS (NM_001357456)	promoter-TSS (NM_001357456)	93	NM_001357456	66306	Mm.29424	NM_175104	ENSMUSG00000034300	Fam53c	2810012G03Rik|Gm21179	family with sequence similarity 53, member C	protein-coding	0.055000	0.552239			
merged_common-65	chr1	171287867	171288067	+	-0.52046	NA	promoter-TSS (NM_013919)	promoter-TSS (NM_013919)	-6	NM_013919	30941	Mm.27510	NM_013919	ENSMUSG00000053483	Usp21	ESTM28|Usp16|Usp23|W53272	ubiquitin specific peptidase 21	protein-coding	0.105000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-1080	chr17	27440276	27440476	+	-0.52046	NA	intron (NM_001013385, intron 5 of 8)	intron (NM_001013385, intron 5 of 8)	56158	NM_001360192	268934	Mm.358940	NM_001013385	ENSMUSG00000063239	Grm4	Gprc1d|mGluR4	glutamate receptor, metabotropic 4	protein-coding	0.005000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-106	chr1	132477059	132477259	+	-0.52046	NA	promoter-TSS (NM_001357486)	promoter-TSS (NM_001357486)	-208	NM_172517	213464	Mm.132868	NM_172517	ENSMUSG00000026439	Rbbp5	4933411J24Rik|C330016J05	retinoblastoma binding protein 5, histone lysine methyltransferase complex subunit	protein-coding	0.050000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-332	chr10	127312401	127312601	+	-0.52046	NA	promoter-TSS (NM_001171582)	promoter-TSS (NM_001171582)	-715	NM_001171582	216443	Mm.28173	NM_001003913	ENSMUSG00000040354	Mars	Metrs|Mtrns	methionine-tRNA synthetase	protein-coding	0.010000	0.502488			
ePOU_nocontrol_ChIP_peaks_unique-2083	chr6	51913763	51913963	+	-0.52046	NA	intron (NM_018773, intron 6 of 12)	intron (NM_018773, intron 6 of 12)	98686	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.005000	0.447761			-34(ATAAGCATAACAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2483	chr9	13735403	13735603	+	-0.52046	NA	Intergenic	Intergenic	-13678	NR_024025	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.015000	0.368159			5(ACTTTATTATGGAAAA,+,0.00)
merged_common-187	chr12	9030023	9030223	+	-0.52046	NA	exon (NM_029321, exon 1 of 3)	exon (NM_029321, exon 1 of 3)	126	NM_029321	75516	Mm.37581	NM_029321	ENSMUSG00000066637	Ttc32	1700013G20Rik	tetratricopeptide repeat domain 32	protein-coding	0.115000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-1137	chr17	76111877	76112077	+	-0.52046	NA	Intergenic	Intergenic	250954	NR_033456	100043885	Mm.127562	NR_033456	ENSMUSG00000117539	Gm4710	-	predicted gene 4710	ncRNA	0.000000	0.437811			-59(ATTAGCATAATTAGGA,-,0.00),-6(CCTTTGTGATGCTGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2164	chr6	139837500	139837700	+	-0.52046	NA	intron (NM_207683, intron 17 of 31)	L1Md_F2|LINE|L1	-3845	NM_011084	18705	Mm.333471	NM_011084	ENSMUSG00000030228	Pik3c2g	C80387|PI3K-C2-gamma	phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 gamma	protein-coding	0.005000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-2408	chr8	72239965	72240165	+	-0.52046	NA	promoter-TSS (NM_007456)	promoter-TSS (NM_007456)	47	NM_007456	11767	Mm.290086	NM_007456	ENSMUSG00000003033	Ap1m1	AA408894|AP47|Adtm1A|Cltnm|mu1A	adaptor-related protein complex AP-1, mu subunit 1	protein-coding	0.100000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-808	chr14	79451695	79451895	+	-0.52046	NA	promoter-TSS (NM_001034882)	promoter-TSS (NM_001034882)	-40	NM_001034882	432879	Mm.308666	NM_001034882	ENSMUSG00000075502	Kbtbd6	EG432879|Gm5465|Zbtbd6	kelch repeat and BTB (POZ) domain containing 6	protein-coding	0.070000	0.542289			
Oct4_nocontrol_ChIP_peaks_unique-492	chr7	136606991	136607191	+	-0.52046	NA	Intergenic	Intergenic	103513	NR_046021	621677	Mm.207290	NR_046021	ENSMUSG00000110101	Gm6249	EG621677	predicted gene 6249	ncRNA	0.015000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-1768	chr4	62519963	62520163	+	-0.52046	NA	promoter-TSS (NM_001276446)	promoter-TSS (NM_001276446)	0	NM_008525	17025	Mm.6988	NM_008525	ENSMUSG00000028393	Alad	ALADH|Lv	aminolevulinate, delta-, dehydratase	protein-coding	0.090000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-722	chr13	103334325	103334525	+	-0.52046	NA	promoter-TSS (NM_175171)	promoter-TSS (NM_175171)	67	NM_175171	328329	Mm.202606	NM_175171	ENSMUSG00000034751	Mast4	4930420O11Rik|AI642422|mKIAA0303	microtubule associated serine/threonine kinase family member 4	protein-coding	0.140000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-1096	chr17	35000865	35001065	+	-0.52046	NA	promoter-TSS (NM_033075)	promoter-TSS (NM_033075)	58	NM_011690	22321	Mm.28420	NM_011690	ENSMUSG00000007029	Vars	Bat6|D17H6S56E|G7a|Vars2	valyl-tRNA synthetase	protein-coding	0.150000	0.791045			
ePOU_nocontrol_ChIP_peaks_unique-188	chr1	195131492	195131692	+	-0.52046	NA	promoter-TSS (NM_013499)	promoter-TSS (NM_013499)	-22	NM_001355060	12946	Mm.301652	NM_013499	ENSMUSG00000016481	Cr1l	Crry|Mcp|mCRY	complement component (3b/4b) receptor 1-like	protein-coding	0.015000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-299	chr10	99261487	99261687	+	-0.52046	NA	Intergenic	CpG	-1644	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.130000	0.716418			
Oct4_nocontrol_ChIP_peaks_unique-320	chr2	125782600	125782800	+	-0.52046	NA	5' UTR (NM_177608, exon 1 of 18)	5' UTR (NM_177608, exon 1 of 18)	170	NM_177608	70354	Mm.138091	NM_133725	ENSMUSG00000035093	Secisbp2l	3110001I20Rik|AI504340|C630011I23	SECIS binding protein 2-like	protein-coding	0.155000	0.781095			
ePOU_nocontrol_ChIP_peaks_unique-1949	chr5	81781931	81782131	+	-0.52046	NA	intron (NM_001359830, intron 25 of 25)	intron (NM_001359830, intron 25 of 25)	342682	NR_138557	67327	Mm.87058	NR_138557		1700031L13Rik	-	RIKEN cDNA 1700031L13 gene	ncRNA	0.005000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-81	chr1	88414832	88415032	+	-0.52046	NA	intron (NM_029269, intron 4 of 7)	intron (NM_029269, intron 4 of 7)	7922	NM_029269	75396	Mm.173058	NM_029269	ENSMUSG00000026295	Spp2	0610038O04Rik|pp-24|spp24	secreted phosphoprotein 2	protein-coding	0.005000	0.388060			63(ATTAACATCACAGTTA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1195	chr18	42262036	42262236	+	-0.52046	NA	promoter-TSS (NM_134137)	promoter-TSS (NM_134137)	-11	NM_134137	107045	Mm.312170	NM_134137	ENSMUSG00000024493	Lars	2310045K21Rik|3110009L02Rik|AW536573|leuRS	leucyl-tRNA synthetase	protein-coding	0.045000	0.507463			
merged_common-272	chr14	74637269	74637469	+	-0.52046	NA	Intergenic	MER103C|DNA|hAT-Charlie	-3505	NM_172812	15558	Mm.214351	NM_172812	ENSMUSG00000034997	Htr2a	5-HT-2|5-HT-2A|E030013E04|Htr-2|Htr2	5-hydroxytryptamine (serotonin) receptor 2A	protein-coding	0.000000	0.308458			-82(CTTTGAAAGAAAATAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-126	chr1	151996039	151996239	+	-0.52046	NA	intron (NM_197990, intron 2 of 5)	intron (NM_197990, intron 2 of 5)	94181	NM_197990	69399	Mm.278031	NM_197990	ENSMUSG00000032666	1700025G04Rik	2610510E02Rik|2900042O04Rik	RIKEN cDNA 1700025G04 gene	protein-coding	0.020000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-1291	chr19	29714466	29714666	+	-0.52046	NA	3' UTR (NM_172836, exon 8 of 8)	3' UTR (NM_172836, exon 8 of 8)	16625	NM_029993	77836	Mm.138437	NM_029993	ENSMUSG00000024806	Mlana	A930034P04Rik|Mart1	melan-A	protein-coding	0.005000	0.363184			-74(ATTTGCTTCATAATAG,-,0.00)
merged_common-107	chr10	80798330	80798530	+	-0.52046	NA	promoter-TSS (NM_013651)	promoter-TSS (NM_013651)	196	NM_023900	78670	Mm.41479	NM_023900	ENSMUSG00000035278	Plekhj1	9530063M10Rik	pleckstrin homology domain containing, family J member 1	protein-coding	0.080000	0.557214			
Oct4_nocontrol_ChIP_peaks_unique-33	chr1	166378952	166379152	+	-0.52046	NA	promoter-TSS (NM_030245)	promoter-TSS (NM_030245)	-115	NM_030245	27878	Mm.100665	NM_030245	ENSMUSG00000026563	Tada1	2900026B15Rik|D1Ertd251e|Staf42|Tada1l	transcriptional adaptor 1	protein-coding	0.115000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-2528	chr9	56418046	56418246	+	-0.52046	NA	promoter-TSS (NM_172924)	promoter-TSS (NM_172924)	-96	NM_172924	244895	Mm.490331	NM_172924	ENSMUSG00000074305	Peak1	1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002	pseudopodium-enriched atypical kinase 1	protein-coding	0.155000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-1186	chr18	35105171	35105371	+	-0.52046	NA	Intergenic	Intergenic	-13641	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.000000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-627	chr13	6090839	6091039	+	-0.52046	NA	Intergenic	Intergenic	229450	NM_011803	23849	Mm.275036	NM_011803	ENSMUSG00000000078	Klf6	AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9	Kruppel-like factor 6	protein-coding	0.000000	0.268657			6(ATATACATCAAAAATC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-513	chr12	17176527	17176727	+	-0.52046	NA	5' UTR (NM_201531, exon 1 of 1)	5' UTR (NM_201531, exon 1 of 1)	261	NM_201531	382571	Mm.40173	NM_201531	ENSMUSG00000051726	Kcnf1	Gm1182|Kv5.1	potassium voltage-gated channel, subfamily F, member 1	protein-coding	0.070000	0.597015			
Oct4_nocontrol_ChIP_peaks_unique-443	chr6	88518699	88518899	+	-0.52046	NA	promoter-TSS (NM_016906)	promoter-TSS (NM_016906)	1	NM_016906	53421	Mm.28375	NM_016906	ENSMUSG00000030082	Sec61a1	AA408394|AA410007|Sec61a	Sec61 alpha 1 subunit (S. cerevisiae)	protein-coding	0.165000	0.751244			
ePOU_nocontrol_ChIP_peaks_unique-285	chr10	93783663	93783863	+	-0.52046	NA	Intergenic	Intergenic	-47792	NM_001206851	327799	Mm.491598	NM_183199	ENSMUSG00000020020	Usp44	E430004F17Rik	ubiquitin specific peptidase 44	protein-coding	0.010000	0.502488			
ePOU_nocontrol_ChIP_peaks_unique-1273	chr19	18608151	18608351	+	-0.52046	NA	intron (NM_017375, intron 1 of 9)	intron (NM_017375, intron 1 of 9)	23562	NM_017375	20409	Mm.172222	NM_017375	ENSMUSG00000024725	Ostf1	C78236|SH3P2|Sh3d3	osteoclast stimulating factor 1	protein-coding	0.015000	0.422886			-22(CCATTTTGATGCTAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-698	chr13	91093492	91093692	+	-0.52046	NA	intron (NM_025770, intron 3 of 7)	intron (NM_025770, intron 3 of 7)	130395	NM_025770	66795	Mm.235385	NM_025770	ENSMUSG00000021619	Atg10	5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l	autophagy related 10	protein-coding	0.000000	0.263682			
merged_common-335	chr16	71469404	71469604	+	-0.52046	NA	Intergenic	Intergenic	219600	NR_040576	78221	Mm.399298	NR_040576	ENSMUSG00000116982	4930567J20Rik	-	RIKEN cDNA 4930567J20 gene	ncRNA	0.000000	0.318408	-40(TATGCATTATTCATT,+,0.00),-40(TATGCATTATTCATT,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-197	chr15	13393207	13393407	+	-0.52046	NA	Intergenic	Intergenic	-219632	NM_007666	12563	Mm.57048	NM_007666	ENSMUSG00000039385	Cdh6	cad6	cadherin 6	protein-coding	0.005000	0.437811			62(TCATTCACTTGCAGAT,+,0.00),78(GCATTCATTTGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1669	chr3	116662224	116662424	+	-0.52046	NA	intron (NM_008246, intron 1 of 11)	CpG	353	NM_008246	15247	Mm.280077	NM_008246	ENSMUSG00000089911	Mfsd14a	Hiat1	major facilitator superfamily domain containing 14A	protein-coding	0.130000	0.731343			
ePOU_nocontrol_ChIP_peaks_unique-1411	chr2	80688103	80688303	+	-0.52046	NA	Intergenic	Intergenic	48939	NM_001190179	69482	Mm.29200	NM_027091	ENSMUSG00000026999	Nup35	2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44	nucleoporin 35	protein-coding	0.005000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-813	chr14	97637929	97638129	+	-0.52046	NA	Intergenic	Intergenic	531736	NM_007826	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0.000000	0.278607			78(CTATGGTCATTTAGAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-89	chr11	82011810	82012010	+	-0.52046	NA	Intergenic	Intergenic	-23667	NM_011333	20296	Mm.290320	NM_011333	ENSMUSG00000035385	Ccl2	AI323594|HC11|JE|MCAF|MCP-1|MCP1|SMC-CF|Scya2|Sigje	chemokine (C-C motif) ligand 2	protein-coding	0.000000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-1622	chr3	87885728	87885928	+	-0.52046	NA	promoter-TSS (NM_033573)	promoter-TSS (NM_033573)	-266	NM_033573	94315	Mm.35089	NM_033573	ENSMUSG00000004895	Prcc	-	papillary renal cell carcinoma (translocation-associated)	protein-coding	0.035000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-379	chr11	45678834	45679034	+	-0.52046	NA	Intergenic	Intergenic	-129149	NR_045876	100009664	Mm.415439	NR_045876		F630206G17Rik	-	RIKEN cDNA F630206G17 gene	ncRNA	0.025000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-147	chr1	167957671	167957871	+	-0.52046	NA	Intergenic	Intergenic	268213	NM_033652	110648	Mm.330081	NM_033652	ENSMUSG00000026686	Lmx1a	Lmx1.1|dr|dreher|sst	LIM homeobox transcription factor 1 alpha	protein-coding	0.000000	0.462687			
Oct4_nocontrol_ChIP_peaks_unique-83	chr11	51967760	51967960	+	-0.52046	NA	exon (NM_029976, exon 1 of 3)	exon (NM_029976, exon 1 of 3)	229	NM_029976	52626	Mm.289456	NM_029976	ENSMUSG00000020392	Cdkn2aipnl	A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520	CDKN2A interacting protein N-terminal like	protein-coding	0.095000	0.646766			
Oct4_nocontrol_ChIP_peaks_unique-153	chr13	78163507	78163707	+	-0.52046	NA	non-coding (NR_028109, exon 11 of 11)	non-coding (NR_028109, exon 11 of 11)	32842	NM_001347538	13865	Mm.439653	NM_010151	ENSMUSG00000069171	Nr2f1	COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1	nuclear receptor subfamily 2, group F, member 1	protein-coding	0.115000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-1483	chr2	142746598	142746798	+	-0.52046	NA	intron (NM_001355123, intron 15 of 26)	intron (NM_001355123, intron 15 of 26)	154766	NM_001081133	16558	Mm.251934	NM_001081133	ENSMUSG00000038844	Kif16b	8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590	kinesin family member 16B	protein-coding	0.005000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-1624	chr3	87930114	87930314	+	-0.52046	NA	promoter-TSS (NM_153562)	promoter-TSS (NM_153562)	-19	NM_153562	229503	Mm.296008	NM_153562	ENSMUSG00000004896	Rrnad1	-	ribosomal RNA adenine dimethylase domain containing 1	protein-coding	0.085000	0.636816			
Oct4_nocontrol_ChIP_peaks_unique-348	chr3	58608626	58608826	+	-0.52046	NA	Intergenic	Intergenic	28481	NM_001081262	545527	Mm.357722	NM_001081262	ENSMUSG00000070471	Erich6	4932431H17Rik|Fam194a	glutamate rich 6	protein-coding	0.000000	0.417910	73(TATGAATATTGCATG,+,0.00),73(TATGAATATTGCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1609	chr3	79249498	79249698	+	-0.52046	NA	intron (NR_045502, intron 2 of 2)	intron (NR_045502, intron 2 of 2)	36679	NR_045502	70924	Mm.444622	NR_045502	ENSMUSG00000104585	4921511C10Rik	-	RIKEN cDNA 4921511C10 gene	ncRNA	0.005000	0.318408			
Oct4_nocontrol_ChIP_peaks_unique-139	chr13	30306112	30306312	+	-0.52046	NA	Intergenic	Intergenic	-30144	NM_177322	11607	Mm.35062	NM_177322	ENSMUSG00000049115	Agtr1a	1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agt1ar|Agtr-1a|Agtr1|Angtr-1a	angiotensin II receptor, type 1a	protein-coding	0.010000	0.298507			32(ATTATCATAACAATAC,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-350	chr3	61216530	61216730	+	-0.52046	NA	Intergenic	Intergenic	-147877	NM_028712	74012	Mm.422674	NM_028712	ENSMUSG00000036894	Rap2b	4021402C18Rik|AA408554	RAP2B, member of RAS oncogene family	protein-coding	0.010000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-1258	chr19	5878063	5878263	+	-0.52046	NA	5' UTR (NM_134154, exon 1 of 6)	5' UTR (NM_134154, exon 1 of 6)	341	NM_001361974	107375	Mm.5323	NM_134154	ENSMUSG00000024818	Slc25a45	AW491445	solute carrier family 25, member 45	protein-coding	0.015000	0.567164			
ePOU_nocontrol_ChIP_peaks_unique-1880	chr4	155816725	155816925	+	-0.52046	NA	intron (NM_207678, intron 4 of 10)	intron (NM_207678, intron 4 of 10)	4336	NM_207678	56036	Mm.23492	NM_018856	ENSMUSG00000029068	Ccnl2	1700010A01Rik|1810019L15Rik|2010319M22Rik|AA409936|AW261738|Ania-6b|HCLA-150|Pcee|SB138	cyclin L2	protein-coding	0.010000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-268	chr10	80167395	80167595	+	-0.52046	NA	promoter-TSS (NM_007705)	promoter-TSS (NM_007705)	-344	NR_152857	12696	Mm.17898	NM_007705	ENSMUSG00000045193	Cirbp	Cirp|R74941	cold inducible RNA binding protein	protein-coding	0.045000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-2468	chr8	124677465	124677665	+	-0.52046	NA	intron (NM_001357357, intron 14 of 19)	intron (NM_001357357, intron 14 of 19)	-14196	NM_175149	69551	Mm.261920	NM_175149	ENSMUSG00000031983	2310022B05Rik	-	RIKEN cDNA 2310022B05 gene	protein-coding	0.020000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-573	chr12	73985676	73985876	+	-0.52046	NA	3' UTR (NM_178392, exon 10 of 10)	3' UTR (NM_178392, exon 10 of 10)	-12001	NM_001364282	238266	Mm.311393	NM_172804	ENSMUSG00000044912	Syt16	Strep14|Syt14l|syt14r	synaptotagmin XVI	protein-coding	0.005000	0.303483			34(ATATAAATGTCAAAGC,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-299	chr2	31744886	31745086	+	-0.52046	NA	intron (NM_001283047, intron 2 of 11)	RLTR12B|LTR|ERVK	-14953	NM_009594	11350	Mm.1318	NM_009594	ENSMUSG00000026842	Abl1	AI325092|Abl|E430008G22Rik|c-Abl	c-abl oncogene 1, non-receptor tyrosine kinase	protein-coding	0.000000	0.343284			-62(AAATGCATAACAATGT,-,0.00),-18(ATAAGCATTACAATGC,-,0.00),40(ATTTAAATAACACAAG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-253	chr18	16490647	16490847	+	-0.52046	NA	Intergenic	MLTR25A|LTR|ERVK	318499	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.005000	0.383085			
Oct4_nocontrol_ChIP_peaks_unique-185	chr14	78322022	78322222	+	-0.52046	NA	Intergenic	Intergenic	-14079	NM_011613	21943	Mm.249221	NM_011613	ENSMUSG00000022015	Tnfsf11	Ly109l|ODF|OPGL|RANKL|Trance	tumor necrosis factor (ligand) superfamily, member 11	protein-coding	0.005000	0.378109			
Oct4_nocontrol_ChIP_peaks_unique-7	chr1	51798224	51798424	+	-0.52046	NA	intron (NM_001161817, intron 9 of 30)	L1MC5|LINE|L1	117654	NM_001161817	17912	Mm.3390	NM_010863	ENSMUSG00000018417	Myo1b	AA406997|MIH-L|MMIa	myosin IB	protein-coding	0.015000	0.467662			-34(TTTCTGTTATGGAAAT,+,0.00),-10(ATATACATGAGCAATA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-621	chr12	118835034	118835234	+	-0.52046	NA	Intergenic	Intergenic	-11195	NM_177082	320145	Mm.51682	NM_177082	ENSMUSG00000048562	Sp8	D930049B17Rik|mBtd	trans-acting transcription factor 8	protein-coding	0.005000	0.358209			-93(TCATTATTAAGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-933	chr15	96460923	96461123	+	-0.52046	NA	promoter-TSS (NM_028148)	promoter-TSS (NM_028148)	-180	NM_028148	72193	Mm.324474	NM_028148	ENSMUSG00000033228	Scaf11	1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013	SR-related CTD-associated factor 11	protein-coding	0.155000	0.776119			
ePOU_nocontrol_ChIP_peaks_unique-2572	chr9	92541996	92542196	+	-0.52046	NA	promoter-TSS (NM_001142916)	promoter-TSS (NM_001142916)	-127	NM_001142916	26432	Mm.79983	NM_011961	ENSMUSG00000032374	Plod2	D530025C14Rik|LH2|Plod-2	procollagen lysine, 2-oxoglutarate 5-dioxygenase 2	protein-coding	0.100000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-171	chr1	181203316	181203516	+	-0.52046	NA	intron (NM_145514, intron 3 of 13)	intron (NM_145514, intron 3 of 13)	8562	NM_145514	226757	Mm.289082	NM_145514	ENSMUSG00000038733	Wdr26	1600024A01Rik|AA693241|AI447817|AU044014|C77982|Gid7	WD repeat domain 26	protein-coding	0.010000	0.308458			
ePOU_nocontrol_ChIP_peaks_unique-2581	chr9	99797391	99797591	+	-0.52046	NA	Intergenic	Intergenic	78679	NM_011440	20669	Mm.261595	NM_011440	ENSMUSG00000053747	Sox14	-	SRY (sex determining region Y)-box 14	protein-coding	0.015000	0.412935			
merged_common-743	chr7	80232572	80232772	+	-0.52046	NA	promoter-TSS (NM_178752)	promoter-TSS (NM_178752)	133	NM_011870	23991	Mm.30217	NM_011870	ENSMUSG00000030538	Cib1	Cibkip|Kip|Prkdcip	calcium and integrin binding 1 (calmyrin)	protein-coding	0.110000	0.761194			
Oct4_nocontrol_ChIP_peaks_unique-28	chr1	139494789	139494989	+	-0.52046	NA	TTS (NM_009791)	TTS (NM_009791)	-6818	NM_031164	14060	Mm.30105	NM_031164	ENSMUSG00000026368	F13b	Cf-13b|Cf13b	coagulation factor XIII, beta subunit	protein-coding	0.010000	0.467662			-64(CCATTGTTATTCAAAC,+,0.00)
merged_common-520	chr3	23165040	23165240	+	-0.52046	NA	Intergenic	Intergenic	913770	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.005000	0.288557			-70(ATAAAGTCATGCAAAT,+,0.00),6(TTACTGTTATGTTAAT,+,0.00),68(ATATTGTCATGTTATT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-537	chr9	83075713	83075913	+	-0.52046	NA	Intergenic	Intergenic	70794	NM_175074	94353	Mm.244426	NM_026122	ENSMUSG00000066456	Hmgn3	1110002A15Rik|6330514M13Rik|BB071015|TRIP7	high mobility group nucleosomal binding domain 3	protein-coding	0.000000	0.358209		-36(TATCCATATGCATG,+,0.00),-36(TATCCATATGCATG,-,0.00),-17(GATGCATATTAATA,+,0.00),-17(GATGCATATTAATA,-,0.00)	-31(ATATGCATGGATAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1433	chr2	105399295	105399495	+	-0.52046	NA	promoter-TSS (NM_009037)	promoter-TSS (NM_009037)	-76	NM_009037	19672	Mm.4876	NM_009037	ENSMUSG00000005973	Rcn1	Rcn	reticulocalbin 1	protein-coding	0.120000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-1069	chr17	24163664	24163864	+	-0.52046	NA	promoter-TSS (NM_172935)	promoter-TSS (NM_172935)	-31	NM_172935	245847	Mm.87319	NM_172935	ENSMUSG00000036820	Amdhd2	5730457F11Rik	amidohydrolase domain containing 2	protein-coding	0.095000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-1339	chr2	17632013	17632213	+	-0.52046	NA	intron (NM_028757, intron 2 of 6)	intron (NM_028757, intron 2 of 6)	38052	NR_156125	74103	Mm.120298	NM_028757	ENSMUSG00000053702	Nebl	1200007O21Rik|A630080F05Rik|BB140644|D830029A09Rik|Lnebl	nebulette	protein-coding	0.020000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-482	chr11	115859564	115859764	+	-0.52046	NA	Intergenic	CpG	35606	NM_001252532	217325	Mm.290450	NM_145438	ENSMUSG00000020782	Llgl2	9130006H11Rik|Llglh2	LLGL2 scribble cell polarity complex component	protein-coding	0.160000	0.771144			
ePOU_nocontrol_ChIP_peaks_unique-1151	chr17	87974822	87975022	+	-0.52046	NA	promoter-TSS (NM_010830)	promoter-TSS (NM_010830)	-128	NM_010830	17688	Mm.18210	NM_010830	ENSMUSG00000005370	Msh6	AU044881|AW550279|GTBP|Gtmbp	mutS homolog 6	protein-coding	0.110000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-1932	chr5	49848481	49848681	+	-0.52046	NA	Intergenic	Intergenic	210415	NM_133911	70693	Mm.272974	NM_133911	ENSMUSG00000029090	Adgra3	3830613O22Rik|AU044632|Gpr125|Tem5-like	adhesion G protein-coupled receptor A3	protein-coding	0.000000	0.388060			
Oct4_nocontrol_ChIP_peaks_unique-24	chr1	130703080	130703280	+	-0.52046	NA	intron (NM_001162416, intron 7 of 12)	intron (NM_001162416, intron 7 of 12)	11396	NM_001162416	18640	Mm.249861	NM_008825	ENSMUSG00000026409	Pfkfb2	4930568D07Rik	6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 2	protein-coding	0.005000	0.353234		-31(TATAAATATGAATA,-,0.00)	66(CCATTATTATGGAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-234	chr16	75031744	75031944	+	-0.52046	NA	intron (NM_001358491, intron 1 of 27)	intron (NM_001358491, intron 1 of 27)	60926	NM_001358493	268902	Mm.171736	NM_175549	ENSMUSG00000052516	Robo2	2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568	roundabout guidance receptor 2	protein-coding	0.000000	0.313433			9(GCATTCTTGTGCACAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1492	chr2	147016920	147017120	+	-0.52046	NA	intron (NM_011917, intron 1 of 29)	L1MA4|LINE|L1	4021	NM_001356403	24128	Mm.3065	NM_011917	ENSMUSG00000027433	Xrn2	-	5'-3' exoribonuclease 2	protein-coding	0.000000	0.338308		31(AATAAATATGAATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1769	chr4	62824698	62824898	+	-0.52046	NA	Intergenic	Intergenic	-140769	NM_001369118	72701	Mm.26479	NM_028326	ENSMUSG00000028358	Zfp618	2810031P15Rik|2810040O04Rik|AI415580|AI505139|D430033D05Rik|Nedd10|Znf618|bM257P7.1	zinc finger protein 618	protein-coding	0.030000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-902	chr15	77841997	77842197	+	-0.52046	NA	promoter-TSS (NM_022410)	promoter-TSS (NM_022410)	78	NM_022410	17886	Mm.29677	NM_022410	ENSMUSG00000022443	Myh9	Fltn|Myhn-1|Myhn1|NMHCIIA|NMMHC-A|NMMHC-IIA|TU72.6	myosin, heavy polypeptide 9, non-muscle	protein-coding	0.115000	0.711443			
Oct4_nocontrol_ChIP_peaks_unique-290	chr2	5130709	5130909	+	-0.52046	NA	Intergenic	Intergenic	-6967	NM_028804	74186	Mm.274715	NM_028804	ENSMUSG00000026676	Ccdc3	2310045O21Rik	coiled-coil domain containing 3	protein-coding	0.010000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-424	chr11	69795338	69795538	+	-0.52046	NA	TTS (NM_001291104)	TTS (NM_001291104)	499	NM_009601	11443	Mm.86425	NM_009601	ENSMUSG00000041189	Chrnb1	Achr-2|Acrb	cholinergic receptor, nicotinic, beta polypeptide 1 (muscle)	protein-coding	0.045000	0.552239			
ePOU_nocontrol_ChIP_peaks_unique-749	chr14	18238715	18238915	+	-0.52046	NA	exon (NM_011584, exon 1 of 8)	exon (NM_011584, exon 1 of 8)	291	NM_011584	353187	Mm.26587	NM_011584	ENSMUSG00000021775	Nr1d2	RVR|Rev-erb	nuclear receptor subfamily 1, group D, member 2	protein-coding	0.115000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-265	chr10	78574762	78574962	+	-0.52046	NA	promoter-TSS (NM_001359302)	promoter-TSS (NM_001359302)	-129	NM_001359302	216136	Mm.2644	NM_173751	ENSMUSG00000032763	Ilvbl	5830463I21|AI415009	ilvB (bacterial acetolactate synthase)-like	protein-coding	0.050000	0.567164			
ePOU_nocontrol_ChIP_peaks_unique-1085	chr17	28952375	28952575	+	-0.52046	NA	promoter-TSS (NM_001356300)	promoter-TSS (NM_001356300)	39	NM_001356300	66989	Mm.435	NM_025888	ENSMUSG00000005936	Kctd20	2410004N11Rik|AI451943|AW541186|D17Ertd562e	potassium channel tetramerisation domain containing 20	protein-coding	0.145000	0.766169			
Oct4_nocontrol_ChIP_peaks_unique-163	chr13	111251667	111251867	+	-0.52046	NA	Intergenic	Intergenic	-3246	NM_175497	238880	Mm.107293	NM_175497	ENSMUSG00000055194	Actbl2	4732495G21Rik	actin, beta-like 2	protein-coding	0.010000	0.313433	-99(AATTTATAATTCATG,+,0.00)		-14(ATTAAAAAAAGAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2071	chr6	45806347	45806547	+	-0.52046	NA	intron (NM_001004357, intron 3 of 23)	intron (NM_001004357, intron 3 of 23)	746386	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.005000	0.388060			-19(ATTAACATAATAATAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-886	chr15	63038800	63039000	+	-0.52046	NA	Intergenic	Intergenic	440708	NR_045279	432958	Mm.255105	NR_045279	ENSMUSG00000115520	Gm20740	-	predicted gene, 20740	ncRNA	0.000000	0.298507			
Oct4_nocontrol_ChIP_peaks_unique-464	chr7	19665070	19665270	+	-0.52046	NA	promoter-TSS (NM_019649)	promoter-TSS (NM_019649)	-140	NM_019649	56457	Mm.290960	NM_019649	ENSMUSG00000002981	Clptm1	HS9|N14	cleft lip and palate associated transmembrane protein 1	protein-coding	0.070000	0.532338			
ePOU_nocontrol_ChIP_peaks_unique-239	chr10	59323423	59323623	+	-0.52046	NA	intron (NM_001316370, intron 1 of 13)	CpG	227	NM_011030	18451	Mm.2212	NM_011030	ENSMUSG00000019916	P4ha1	AL022634|P4ha	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha 1 polypeptide	protein-coding	0.100000	0.731343			
ePOU_nocontrol_ChIP_peaks_unique-1617	chr3	85025075	85025275	+	-0.52046	NA	Intergenic	Intergenic	72964	NM_080428	50754	Mm.196475	NM_080428	ENSMUSG00000028086	Fbxw7	1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10	F-box and WD-40 domain protein 7	protein-coding	0.010000	0.502488			
Oct4_nocontrol_ChIP_peaks_unique-376	chr4	41147588	41147788	+	-0.52046	NA	intron (NM_026275, intron 1 of 4)	intron (NM_026275, intron 1 of 4)	11667	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.000000	0.368159		11(TATGCATATGCAAA,+,0.00),11(TATGCATATGCAAA,-,0.00)	
merged_common-710	chr6	92214763	92214963	+	-0.52046	NA	promoter-TSS (NM_030081)	promoter-TSS (NM_030081)	7	NM_030081	78287	Mm.290734	NM_030081	ENSMUSG00000014550	Rbsn	5330426D11Rik|Zfyve20	rabenosyn, RAB effector	protein-coding	0.110000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-1849	chr4	133545853	133546053	+	-0.52046	NA	promoter-TSS (NM_010948)	promoter-TSS (NM_010948)	74	NM_010948	18221	Mm.69	NM_010948	ENSMUSG00000028851	Nudc	SIG-92|Silg92	nudC nuclear distribution protein	protein-coding	0.145000	0.736318			
ePOU_nocontrol_ChIP_peaks_unique-309	chr10	110933182	110933382	+	-0.52046	NA	intron (NM_007792, intron 2 of 5)	intron (NM_007792, intron 2 of 5)	13106	NM_007792	13008	Mm.2020	NM_007792	ENSMUSG00000020186	Csrp2	AW551867|Crp2|SmLim	cysteine and glycine-rich protein 2	protein-coding	0.000000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-2155	chr6	125331112	125331312	+	-0.52046	NA	intron (NM_011324, intron 2 of 11)	CpG	9872	NM_011324	20276	Mm.144114	NM_011324	ENSMUSG00000030340	Scnn1a	ENaC|SCNEA|Scnn1|mENaC	sodium channel, nonvoltage-gated 1 alpha	protein-coding	0.065000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-2350	chr8	14888527	14888727	+	-0.52046	NA	promoter-TSS (NM_012000)	promoter-TSS (NM_012000)	91	NM_012000	26889	Mm.254027	NM_012000	ENSMUSG00000026317	Cln8	mnd	ceroid-lipofuscinosis, neuronal 8	protein-coding	0.040000	0.557214			
Oct4_nocontrol_ChIP_peaks_unique-47	chr10	18845203	18845403	+	-0.52046	NA	exon (NM_022032, exon 1 of 3)	exon (NM_022032, exon 1 of 3)	232	NM_022032	64058	Mm.28209	NM_022032	ENSMUSG00000019851	Perp	1110017A08Rik|KCP1|KRTCAP1|PIGPC1|THW	PERP, TP53 apoptosis effector	protein-coding	0.100000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-336	chr11	3387057	3387257	+	-0.52046	NA	intron (NM_010718, intron 2 of 15)	intron (NM_010718, intron 2 of 15)	-15753	NM_001361623	16886	Mm.124176	NM_010718	ENSMUSG00000020451	Limk2	Limk-2|whe	LIM motif-containing protein kinase 2	protein-coding	0.010000	0.542289			
merged_common-471	chr2	58580114	58580314	+	-0.52046	NA	intron (NM_001289660, intron 1 of 7)	intron (NM_001289660, intron 1 of 7)	12880	NM_001289660	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.015000	0.402985			-90(TCATTTTAATGCAGAT,+,0.00),-13(ATATTGTCTTTGAAAC,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-519	chr12	31861457	31861657	+	-0.52046	NA	intron (NM_001163126, intron 14 of 22)	intron (NM_001163126, intron 14 of 22)	88688	NM_001361928	73389	Mm.390461	NM_153198	ENSMUSG00000002996	Hbp1	1700058O05Rik|BE629963|C330012F01Rik|C86454	high mobility group box transcription factor 1	protein-coding	0.005000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-828	chr14	120137866	120138066	+	-0.52046	NA	Intergenic	Intergenic	-95531	NM_001001490	239283	Mm.138520	NM_001001490	ENSMUSG00000044819	Oxgr1	Cysltr3|Gm299|Gpr80|Gpr99|P2Y15	oxoglutarate (alpha-ketoglutarate) receptor 1	protein-coding	0.050000	0.616915			
merged_common-548	chr3	95217718	95217918	+	-0.52046	NA	TTS (NM_019914)	TTS (NM_019914)	124	NM_029885	213054	Mm.224820	NM_029885	ENSMUSG00000038766	Gabpb2	1810015F01Rik|5830427M07|9430006E19Rik|A430024B14Rik|AV050852|Gabpb2-1	GA repeat binding protein, beta 2	protein-coding	0.060000	0.557214			
Oct4_nocontrol_ChIP_peaks_unique-390	chr4	94517406	94517606	+	-0.52046	NA	intron (NM_026368, intron 5 of 5)	intron (NM_026368, intron 5 of 5)	39290	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.000000	0.323383		-47(TGTGCATATGCATA,+,0.00),-47(TGTGCATATGCATA,-,0.00)	
merged_common-459	chr2	26964427	26964627	+	-0.52046	NA	promoter-TSS (NM_001362876)	promoter-TSS (NM_001362876)	-141	NR_156410	227656	Mm.291874	NM_207234	ENSMUSG00000052406	Rexo4	Gm111|Rex4|Xpmc2h	REX4, 3'-5' exonuclease	protein-coding	0.055000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-2630	chrX	49288185	49288385	+	-0.52046	NA	promoter-TSS (NM_001271447)	promoter-TSS (NM_001271447)	-43	NM_001271450	209224	Mm.327730	NM_145951	ENSMUSG00000031109	Enox2	APK1|Cova1|tNOX	ecto-NOX disulfide-thiol exchanger 2	protein-coding	0.020000	0.562189			
Oct4_nocontrol_ChIP_peaks_unique-240	chr17	9332240	9332440	+	-0.52046	NA	Intergenic	Intergenic	-164318	NR_027881	67791	Mm.158175	NR_027881	ENSMUSG00000097049	6530411M01Rik	-	RIKEN cDNA 6530411M01 gene	ncRNA	0.000000	0.318408			-49(GGATTGTTTTATAAAT,+,0.00),66(ATATGAATAACACAGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2170	chr6	148548591	148548791	+	-0.52046	NA	Intergenic	Intergenic	65618	NR_045867	622319	Mm.491049	NM_001037912	ENSMUSG00000070995	Gm6313	EG622319	predicted gene 6313	ncRNA	0.000000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-1649	chr3	100821352	100821552	+	-0.52046	NA	Intergenic	Intergenic	-4007	NM_178594	242122	Mm.137467	NM_178594	ENSMUSG00000051076	Vtcn1	B7h4|B7s1|B7x|BC032925	V-set domain containing T cell activation inhibitor 1	protein-coding	0.005000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-1071	chr17	24414769	24414969	+	-0.52046	NA	promoter-TSS (NR_033554)	promoter-TSS (NR_033554)	194	NM_001080127	19826	Mm.1951	NM_009070	ENSMUSG00000034681	Rnps1	-	ribonucleic acid binding protein S1	protein-coding	0.125000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-1981	chr5	114774685	114774885	+	-0.52046	NA	promoter-TSS (NM_026718)	promoter-TSS (NM_026718)	198	NR_027872	67642	Mm.482535	NM_175120	ENSMUSG00000092183	4930515G01Rik	-	RIKEN cDNA 4930515G01 gene	ncRNA	0.125000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-1799	chr4	94394377	94394577	+	-0.52046	NA	Intergenic	Intergenic	162319	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.005000	0.398010			
Oct4_nocontrol_ChIP_peaks_unique-41	chr1	193196876	193197076	+	-0.52046	NA	intron (NM_153137, intron 3 of 15)	intron (NM_153137, intron 3 of 15)	4570	NM_153137	215243	Mm.261259	NM_153137	ENSMUSG00000037318	Traf3ip3	6030423D04Rik|AI115021|T3jam	TRAF3 interacting protein 3	protein-coding	0.005000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-911	chr15	81514364	81514564	+	-0.52046	NA	Intergenic	Intergenic	48148	NM_019712	56438	Mm.29405	NM_019712	ENSMUSG00000022400	Rbx1	1500002P15Rik|AA517855|ROC1	ring-box 1	protein-coding	0.025000	0.597015			
Oct4_nocontrol_ChIP_peaks_unique-57	chr10	43452184	43452384	+	-0.52046	NA	intron (NM_001168289, intron 7 of 7)	intron (NM_001168289, intron 7 of 7)	-26856	NM_199028	331623	Mm.490388	NM_199028	ENSMUSG00000038214	Bend3	mKIAA1553	BEN domain containing 3	protein-coding	0.020000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-438	chr11	81613218	81613418	+	-0.52046	NA	intron (NM_001034013, intron 1 of 9)	intron (NM_001034013, intron 1 of 9)	-39779	NM_001033765	237880	Mm.435528	NM_001033765		1700071K01Rik	-	RIKEN cDNA 1700071K01 gene	protein-coding	0.030000	0.517413			
ePOU_nocontrol_ChIP_peaks_unique-517	chr12	29096000	29096200	+	-0.52046	NA	Intergenic	Intergenic	-45829	NR_154987	102633526	Mm.134217	NR_154987		Gm31333	-	predicted gene, 31333	ncRNA	0.015000	0.442786			
merged_common-58	chr1	160974667	160974867	+	-0.52046	NA	3' UTR (NM_001024952, exon 20 of 20)	3' UTR (NM_001024952, exon 20 of 20)	-3839	NM_080844	11905	Mm.260770	NM_080844	ENSMUSG00000026715	Serpinc1	AI114908|ATIII|At-3|At3	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	protein-coding	0.000000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-1462	chr2	126310137	126310337	+	-0.52046	NA	Intergenic	Intergenic	158096	NM_001355583	69185	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	0.010000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-2365	chr8	37915797	37915997	+	-0.52046	NA	intron (NM_145841, intron 2 of 7)	intron (NM_145841, intron 2 of 7)	336305	NR_029884	723860		NR_029884	ENSMUSG00000065457	Mir383	Mirn383|mir-383|mmu-mir-383	microRNA 383	ncRNA	0.015000	0.343284			31(ATTAGCAAGACAAGGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1419	chr2	92283013	92283213	+	-0.52046	NA	intron (NM_001362832, intron 6 of 18)	MLT1A1|LTR|ERVL-MaLR	61641	NM_001109690	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|BHC80a|Bhc|Bhc80|D030065N23Rik|PFTF1|mBHC80	PHD finger protein 21A	protein-coding	0.010000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-397	chr11	58307047	58307247	+	-0.52046	NA	promoter-TSS (NM_001040686)	promoter-TSS (NM_001040686)	78	NM_001040686	103836	Mm.41440	NM_182996	ENSMUSG00000037243	Zfp692	AI746306|AI839920|Zfp692-ps|Znf692	zinc finger protein 692	protein-coding	0.110000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-716	chr13	100651095	100651295	+	-0.52046	NA	promoter-TSS (NM_001283011)	promoter-TSS (NM_001283011)	-134	NM_011233	19356	Mm.248489	NM_011233	ENSMUSG00000021635	Rad17	MmRad24	RAD17 checkpoint clamp loader component	protein-coding	0.100000	0.691542			
Oct4_nocontrol_ChIP_peaks_unique-281	chr19	33148292	33148492	+	-0.52046	NA	intron (NR_160911, intron 6 of 6)	intron (NR_160911, intron 6 of 6)	-8720	NR_039552	100628575		NR_039552	ENSMUSG00000106278	Mir3970	mmu-mir-3970|mu-mir-3970	microRNA 3970	ncRNA	0.000000	0.333333	70(CATGCATGAGTCATA,+,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-378	chr4	42949941	42950141	+	-0.52046	NA	promoter-TSS (NM_001355440)	promoter-TSS (NM_001355440)	174	NM_001355438	56323	Mm.20437	NM_019874	ENSMUSG00000036052	Dnajb5	1110058L06Rik|AI462558|Hsc40|Hsp40-3	DnaJ heat shock protein family (Hsp40) member B5	protein-coding	0.090000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-2411	chr8	73104211	73104411	+	-0.52046	NA	intron (NM_001317391, intron 5 of 15)	L1M4|LINE|L1	87799	NR_039551	100628574		NR_039551	ENSMUSG00000093140	Mir28b	mmu-mir-28b	microRNA 28b	ncRNA	0.005000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-556	chr12	59219679	59219879	+	-0.52046	NA	promoter-TSS (NM_001033156)	promoter-TSS (NM_001033156)	-296	NM_001033156	70611	Mm.311026	NM_001033156	ENSMUSG00000035329	Fbxo33	5730501N20Rik|AI642135	F-box protein 33	protein-coding	0.140000	0.691542			
Oct4_nocontrol_ChIP_peaks_unique-339	chr3	22205273	22205473	+	-0.52046	NA	intron (NM_030732, intron 14 of 15)	L1MA4|LINE|L1	-45997	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.010000	0.368159			
Oct4_nocontrol_ChIP_peaks_unique-10	chr1	57983500	57983700	+	-0.52046	NA	Intergenic	Lx6|LINE|L1	-1740	NM_001177867	68549	Mm.32800	NM_199007	ENSMUSG00000026039	Sgo2a	1110007N04Rik|4932411A20Rik|5730576N04Rik|AU018846|AV008062|D1Ertd8e|Sgol2|Sgol2a|Tripin	shugoshin 2A	protein-coding	0.000000	0.373134			
Oct4_nocontrol_ChIP_peaks_unique-202	chr15	31601595	31601795	+	-0.52046	NA	promoter-TSS (NM_001356313)	promoter-TSS (NM_001356313)	151	NM_007637	12465	Mm.282158	NM_007637	ENSMUSG00000022234	Cct5	CCT-epsilon|Ccte|TCP-1-epsilon|TCPE|mKIAA0098	chaperonin containing Tcp1, subunit 5 (epsilon)	protein-coding	0.080000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-1308	chr19	45048085	45048285	+	-0.52046	NA	intron (NM_001178013, intron 1 of 9)	intron (NM_001178013, intron 1 of 9)	609	NM_001362381	94280	Mm.36169	NM_053197	ENSMUSG00000025212	Sfxn3	-	sideroflexin 3	protein-coding	0.025000	0.512438			
ePOU_nocontrol_ChIP_peaks_unique-2285	chr7	115501708	115501908	+	-0.52046	NA	intron (NM_001025559, intron 13 of 15)	intron (NM_001025559, intron 13 of 15)	299801	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.010000	0.452736			
merged_common-654	chr5	103829533	103829733	+	-0.52046	NA	intron (NM_133919, intron 10 of 19)	intron (NM_133919, intron 10 of 19)	75060	NM_001080798	17355	Mm.6949	NM_133919	ENSMUSG00000029313	Aff1	9630032B01Rik|AW319193|Af4|Mllt2h|Rob	AF4/FMR2 family, member 1	protein-coding	0.015000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-2417	chr8	78864099	78864299	+	-0.52046	NA	Intergenic	Intergenic	-43047	NM_001191004	78651	Mm.28694	NM_030145	ENSMUSG00000031683	Lsm6	1500031N17Rik|2410088K19Rik|AI747288	LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated	protein-coding	0.010000	0.432836			
Oct4_nocontrol_ChIP_peaks_unique-74	chr11	19633542	19633742	+	-0.52046	NA	Intergenic	Intergenic	-290800	NM_033523	114716	Mm.266627	NM_033523	ENSMUSG00000045671	Spred2	C79158	sprouty-related EVH1 domain containing 2	protein-coding	0.015000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-947	chr15	103163176	103163376	+	-0.52046	NA	promoter-TSS (NM_027885)	promoter-TSS (NM_027885)	8	NM_027885	71726	Mm.254820	NM_027885	ENSMUSG00000036061	Smug1	1200013B09Rik|A930006H09Rik|C85220	single-strand selective monofunctional uracil DNA glycosylase	protein-coding	0.050000	0.597015			74(ATTTAAATAAGAAGAA,-,0.00)
merged_common-491	chr2	109947910	109948110	+	-0.52046	NA	intron (NM_172671, intron 1 of 17)	L1MB3|LINE|L1	30363	NM_172671	107515	Mm.277351	NM_172671	ENSMUSG00000050199	Lgr4	9130225G07|A330106J01Rik|A930009A08Rik|Gpr48	leucine-rich repeat-containing G protein-coupled receptor 4	protein-coding	0.000000	0.393035			-84(TTTTGCAAGATAAAAA,-,0.00),67(GCTTTGTCATTGATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1227	chr18	69469900	69470100	+	-0.52046	NA	intron (NM_001361127, intron 5 of 19)	intron (NM_001361127, intron 5 of 19)	123840	NM_001361128	21413	Mm.4269	NM_013685	ENSMUSG00000053477	Tcf4	5730422P05Rik|ASP-I2|E2-2|E2.2|ITF-2|ITF-2b|ITF2|ME2|MITF-2A|MITF-2B|SEF-2|SEF2|SEF2-1|TFE|Tcf-4|bHLHb19	transcription factor 4	protein-coding	0.040000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-2049	chr6	29905151	29905351	+	-0.52046	NA	intron (NM_001347084, intron 14 of 17)	L1MA6|LINE|L1	-11762	NM_001037740	320609	Mm.56097	NM_177204	ENSMUSG00000039629	Strip2	D330017J20Rik|Fam40b	striatin interacting protein 2	protein-coding	0.025000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-1882	chr5	3543821	3544021	+	-0.52046	NA	promoter-TSS (NM_001042501)	promoter-TSS (NM_001042501)	88	NM_001042501	68152	Mm.240265	NM_026583	ENSMUSG00000058503	Fam133b	2900022K02Rik|5830415L20Rik	family with sequence similarity 133, member B	protein-coding	0.130000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-1663	chr3	113796289	113796489	+	-0.52046	NA	Intergenic	Intergenic	-166240	NM_001038696	67225	Mm.316928	NM_026043	ENSMUSG00000027981	Rnpc3	2810441O16Rik|AI447568|C030014B17Rik	RNA-binding region (RNP1, RRM) containing 3	protein-coding	0.005000	0.328358	-100(AATGAATTATGAATT,+,0.00),-100(AATGAATTATGAATT,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-216	chr15	86067718	86067918	+	-0.52046	NA	intron (NM_001205353, intron 1 of 18)	(CA)n|Simple_repeat|Simple_repeat	9091	NM_001205353	223752	Mm.24442	NM_172611	ENSMUSG00000035900	Gramd4	9930016O13	GRAM domain containing 4	protein-coding	0.010000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-1330	chr2	6366762	6366962	+	-0.52046	NA	intron (NM_181399, intron 1 of 13)	intron (NM_181399, intron 1 of 13)	14126	NM_181399	98910	Mm.40673	NM_181399	ENSMUSG00000039046	Usp6nl	AI316785|RNTRE|TRE2NL|mKIAA0019	USP6 N-terminal like	protein-coding	0.015000	0.412935			25(TCACTGTCATTCAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2140	chr6	113623752	113623952	+	-0.52046	NA	promoter-TSS (NM_009507)	promoter-TSS (NM_009507)	-142	NM_009507	22346	Mm.29407	NM_009507	ENSMUSG00000033933	Vhl	Vhlh|pVHL	von Hippel-Lindau tumor suppressor	protein-coding	0.065000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-2600	chr9	110945104	110945304	+	-0.52046	NA	intron (NM_011562, intron 1 of 5)	intron (NM_011562, intron 1 of 5)	954	NM_011562	21667	Mm.5090	NM_011562	ENSMUSG00000032494	Tdgf1	CR1|cripto	teratocarcinoma-derived growth factor 1	protein-coding	0.040000	0.393035			-21(TTCTTTTTTTGCATAT,+,0.00)
merged_common-223	chr13	19612484	19612684	+	-0.52046	NA	intron (NM_134065, intron 1 of 2)	intron (NM_134065, intron 1 of 2)	7246	NM_134065	105298	Mm.275054	NM_134065	ENSMUSG00000002808	Epdr1	AU040950|AV006210|Epdm2|Epdr2|MERP-1|MERP-2|MERP2|Ucc1	ependymin related protein 1 (zebrafish)	protein-coding	0.000000	0.368159		-94(AATACATATGCAGT,+,0.00),-94(AATACATATGCAGT,-,0.00)	
merged_common-636	chr5	37287478	37287678	+	-0.52046	NA	intron (NM_007765, intron 12 of 13)	RLTR17B_Mm|LTR|ERVK	41814	NM_007765	12933	Mm.290995	NM_007765	ENSMUSG00000029121	Crmp1	CRMP-1|DRP-1|Dpysl1|ULIP-3|Ulip3	collapsin response mediator protein 1	protein-coding	0.005000	0.288557		-43(CATGCATGTGCATA,+,0.00),-37(TGTGCATATTCATT,+,0.00),-37(TGTGCATATTCATT,-,0.00),-15(TGTACATATGCATA,+,0.00),-15(TGTACATATGCATA,-,0.00),-9(TATGCATATATATG,-,0.00),71(TATACATATGTATA,+,0.00),71(TATACATATGTATA,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-251	chr18	10617820	10618020	+	-0.52046	NA	exon (NM_009226, exon 1 of 4)	exon (NM_009226, exon 1 of 4)	124	NM_009226	20641	Mm.603	NM_009226	ENSMUSG00000002477	Snrpd1	AA407109|AL023031|SMD1	small nuclear ribonucleoprotein D1	protein-coding	0.085000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-205	chr10	21446790	21446990	+	-0.52046	NA	Intergenic	Lx8b|LINE|L1	69590	NM_178713	237320	Mm.90181	NM_178713	ENSMUSG00000037542	Aldh8a1	Raldh4	aldehyde dehydrogenase 8 family, member A1	protein-coding	0.025000	0.442786			
ePOU_nocontrol_ChIP_peaks_unique-2432	chr8	90828711	90828911	+	-0.52046	NA	promoter-TSS (NM_177224)	promoter-TSS (NM_177224)	-24	NM_177224	109151	Mm.100615	NM_177224	ENSMUSG00000056608	Chd9	1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308	chromodomain helicase DNA binding protein 9	protein-coding	0.075000	0.676617			
Oct4_nocontrol_ChIP_peaks_unique-538	chr9	84343532	84343732	+	-0.52046	NA	Intergenic	Intergenic	394851	NM_199195	12040	Mm.12819	NM_199195	ENSMUSG00000032263	Bckdhb	BCKDE1B|BCKDH E1-beta	branched chain ketoacid dehydrogenase E1, beta polypeptide	protein-coding	0.010000	0.417910		17(TTTGCATATTCATG,+,0.00),17(TTTGCATATTCATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-549	chr12	57098620	57098820	+	-0.52046	NA	intron (NM_172577, intron 1 of 9)	intron (NM_172577, intron 1 of 9)	61923	NM_001167976	217593	Mm.32835	NM_172577	ENSMUSG00000035472	Slc25a21	9930033G19Rik|A630030I10|BB158148	solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21	protein-coding	0.005000	0.323383	-36(TGTGAATAATACATA,-,0.00)		
merged_common-803	chr8	94214549	94214749	+	-0.52046	NA	promoter-TSS (NM_001357266)	promoter-TSS (NM_001357266)	85	NM_001357266	71805	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.130000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-95	chr1	111737805	111738005	+	-0.52046	NA	Intergenic	Intergenic	127013	NM_001081316	319901	Mm.103468	NM_001081316	ENSMUSG00000038702	Dsel	9330132E09Rik|DS-epi2	dermatan sulfate epimerase-like	protein-coding	0.000000	0.318408			
Oct4_nocontrol_ChIP_peaks_unique-412	chr5	25411933	25412133	+	-0.52046	NA	intron (NM_001081383, intron 3 of 58)	L1M2|LINE|L1	86750	NM_001081383	231051	Mm.332268	NM_001081383	ENSMUSG00000038056	Kmt2c	E330008K23Rik|HALR|Mll3	lysine (K)-specific methyltransferase 2C	protein-coding	0.000000	0.288557		-41(AATTAATATGCATA,+,0.00),-41(AATTAATATGCATA,-,0.00),-35(TATGCATATTCAAA,+,0.00),-35(TATGCATATTCAAA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1661	chr3	109636099	109636299	+	-0.52046	NA	intron (NM_020505, intron 20 of 26)	intron (NM_020505, intron 20 of 26)	62192	NM_146139	57257	Mm.282257	NM_020505	ENSMUSG00000033721	Vav3	A530094I06Rik|AA986410|Idd18.1	vav 3 oncogene	protein-coding	0.005000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-1923	chr5	36830549	36830749	+	-0.52046	NA	promoter-TSS (NM_008550)	promoter-TSS (NM_008550)	0	NM_008550	17160	Mm.761	NM_008550	ENSMUSG00000029119	Man2b2	mKIAA0935	mannosidase 2, alpha B2	protein-coding	0.105000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-1967	chr5	104201410	104201610	+	-0.52046	NA	intron (NM_001359013, intron 1 of 5)	intron (NM_001359013, intron 1 of 5)	-1107	NM_016779	13406	Mm.199008	NM_016779	ENSMUSG00000029307	Dmp1	AG1|AV020965|DMP-1|Dmp|PP	dentin matrix protein 1	protein-coding	0.020000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-1614	chr3	84133700	84133900	+	-0.52046	NA	intron (NM_029797, intron 4 of 7)	ID|SINE|ID	21986	NM_029797	76915	Mm.274829	NM_029797	ENSMUSG00000033752	Mnd1	2610034E18Rik|AI591601|Gaj	meiotic nuclear divisions 1	protein-coding	0.000000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-375	chr11	39520168	39520368	+	-0.52046	NA	Intergenic	Intergenic	-130043	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	0.005000	0.378109			23(ATCTGCATTGCAATAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1930	chr5	44759863	44760063	+	-0.52046	NA	intron (NM_001077398, intron 1 of 8)	intron (NM_001077398, intron 1 of 8)	39783	NM_001359071	16826	Mm.25785	NM_010698	ENSMUSG00000039706	Ldb2	AI035351|AW146358|CLIM1|CLP-36|Ldb3	LIM domain binding 2	protein-coding	0.005000	0.353234			
merged_common-779	chr8	34732801	34733001	+	-0.52046	NA	Intergenic	Intergenic	-74709	NM_176933	319520	Mm.170276	NM_176933	ENSMUSG00000031530	Dusp4	2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2	dual specificity phosphatase 4	protein-coding	0.005000	0.373134			26(ATTTACAATCCAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2500	chr9	24341534	24341734	+	-0.52046	NA	Intergenic	Intergenic	161506	NM_172920	244745	Mm.38526	NM_172920	ENSMUSG00000043067	Dpy19l1	1100001I19Rik|6030402K12|AI225861|AW558481	dpy-19-like 1 (C. elegans)	protein-coding	0.010000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-409	chr11	62511479	62511679	+	-0.52046	NA	intron (NM_001039536, intron 5 of 6)	MLTR25A|LTR|ERVK	27682	NM_028448	73139	Mm.390409	NM_028448	ENSMUSG00000018509	Cenpv	3110013H01Rik|AA671303|Prr6	centromere protein V	protein-coding	0.015000	0.472637			55(ACATTATTATGCAAAC,+,0.00)
merged_common-255	chr14	30745296	30745496	+	-0.52046	NA	intron (NM_001166531, intron 2 of 21)	intron (NM_001166531, intron 2 of 21)	29781	NM_001166532	54650	Mm.294662	NM_019460	ENSMUSG00000006527	Sfmbt1	4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr	Scm-like with four mbt domains 1	protein-coding	0.010000	0.318408			
ePOU_nocontrol_ChIP_peaks_unique-272	chr10	81182877	81183077	+	-0.52046	NA	promoter-TSS (NM_001190474)	promoter-TSS (NM_001190474)	-30	NM_001190474	13144	Mm.10294	NM_007828	ENSMUSG00000034974	Dapk3	ZIPK|dlk	death-associated protein kinase 3	protein-coding	0.095000	0.587065			
ePOU_nocontrol_ChIP_peaks_unique-2115	chr6	88842000	88842200	+	-0.52046	NA	promoter-TSS (NR_045880)	promoter-TSS (NR_045880)	-165	NR_155424	80283	Mm.166858	NM_030251	ENSMUSG00000030083	Abtb1	AI847549|BC003234|BPOZ|EF1ABP	ankyrin repeat and BTB (POZ) domain containing 1	protein-coding	0.055000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-665	chr13	48252689	48252889	+	-0.52046	NA	intron (NR_102303, intron 1 of 2)	MLT1A1|LTR|ERVL-MaLR	-8327	NM_031166	15904	Mm.458006	NM_031166	ENSMUSG00000021379	Id4	Idb4|bHLHb27	inhibitor of DNA binding 4	protein-coding	0.010000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-1798	chr4	94389272	94389472	+	-0.52046	NA	Intergenic	Intergenic	167424	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.000000	0.288557			
ePOU_nocontrol_ChIP_peaks_unique-1063	chr17	15704628	15704828	+	-0.52046	NA	promoter-TSS (NM_007690)	promoter-TSS (NM_007690)	-239	NM_007690	12648	Mm.8137	NM_007690	ENSMUSG00000023852	Chd1	4930525N21Rik|AI851787|AW555109	chromodomain helicase DNA binding protein 1	protein-coding	0.130000	0.751244			
Oct4_nocontrol_ChIP_peaks_unique-528	chr9	32640773	32640973	+	-0.52046	NA	Intergenic	RLTR20A4|LTR|ERVK	-55169	NM_001038642	23871	Mm.292415	NM_011808	ENSMUSG00000032035	Ets1	AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs	E26 avian leukemia oncogene 1, 5' domain	protein-coding	0.000000	0.363184			
Oct4_nocontrol_ChIP_peaks_unique-302	chr2	45730029	45730229	+	-0.52046	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	33524	NR_040497	69405	Mm.396184	NR_040497	ENSMUSG00000086202	1700019E08Rik	-	RIKEN cDNA 1700019E08 gene	ncRNA	0.000000	0.258706		-30(TATATATATGCATA,+,0.00),-24(TATGCATATAAATA,-,0.00),-8(TGTGCATATGCATA,+,0.00),-8(TGTGCATATGCATA,-,0.00),-2(TATGCATATACATG,+,0.00),-2(TATGCATATACATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2349	chr8	13785642	13785842	+	-0.52046	NA	exon (NM_025924, exon 1 of 9)	exon (NM_025924, exon 1 of 9)	127	NM_025924	67031	Mm.44858	NM_025924	ENSMUSG00000038398	Upf3a	2600001C03Rik|4930546M19Rik|RENT3A|UPF3	UPF3 regulator of nonsense transcripts homolog A (yeast)	protein-coding	0.135000	0.736318			
Oct4_nocontrol_ChIP_peaks_unique-259	chr18	55486030	55486230	+	-0.52046	NA	Intergenic	Intergenic	-493539	NM_001360787	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.015000	0.358209			
Oct4_nocontrol_ChIP_peaks_unique-515	chr8	86745531	86745731	+	-0.52046	NA	promoter-TSS (NR_027829)	promoter-TSS (NR_027829)	-68	NR_027829	666945	Mm.391806	NR_027829		Gm10638	-	predicted gene 10638	ncRNA	0.160000	0.791045			
Oct4_nocontrol_ChIP_peaks_unique-176	chr14	46832021	46832221	+	-0.52046	NA	promoter-TSS (NM_001360455)	promoter-TSS (NM_001360455)	-13	NM_001360454	68755	Mm.343809	NM_026832	ENSMUSG00000055128	Cgrrf1	1110038G02Rik|1810009H17Rik|CGR19	cell growth regulator with ring finger domain 1	protein-coding	0.065000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-579	chr12	77312920	77313120	+	-0.52046	NA	intron (NM_001252614, intron 3 of 12)	intron (NM_001252614, intron 3 of 12)	74281	NR_045554	53618	Mm.35628	NM_016893	ENSMUSG00000021065	Fut8	-	fucosyltransferase 8	protein-coding	0.005000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-1921	chr5	36695802	36696002	+	-0.52046	NA	5' UTR (NM_001081232, exon 1 of 9)	5' UTR (NM_001081232, exon 1 of 9)	119	NM_001081232	320661	Mm.26480	NM_177221	ENSMUSG00000029190	D5Ertd579e	9030221A05Rik|A930018H20Rik|Kiaa0232	DNA segment, Chr 5, ERATO Doi 579, expressed	protein-coding	0.145000	0.800995			
merged_common-649	chr5	91569392	91569592	+	-0.52046	NA	intron (NM_145562, intron 1 of 3)	intron (NM_145562, intron 1 of 3)	51792	NM_145562	231440	Mm.5002	NM_145562	ENSMUSG00000034981	Parm1	2210012L08Rik|9130213B05Rik|W91666	prostate androgen-regulated mucin-like protein 1	protein-coding	0.000000	0.328358			-83(TTTTAAATAACAATAA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-423	chr5	101848052	101848252	+	-0.52046	NA	intron (NM_172882, intron 62 of 66)	intron (NM_172882, intron 62 of 66)	83022	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.010000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-1123	chr17	66331365	66331565	+	-0.52046	NA	Intergenic	Intergenic	118285	NM_172963	68617	Mm.33421	NM_172963	ENSMUSG00000052105	Mtcl1	1110012J17Rik|Ccdc165|D130071O13|Kiaa0802|Soga2|mKIAA0802|t8219b25	microtubule crosslinking factor 1	protein-coding	0.020000	0.502488		65(CATGCGTATGCATC,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1597	chr3	67147383	67147583	+	-0.52046	NA	intron (NM_001356273, intron 4 of 9)	intron (NM_001356273, intron 4 of 9)	161516	NM_001356273	66880	Mm.316418	NM_025822	ENSMUSG00000034544	Rsrc1	1200013F24Rik|SRrp53	arginine/serine-rich coiled-coil 1	protein-coding	0.015000	0.383085			15(ATTTGCAAATGAATTA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1110	chr17	51027385	51027585	+	-0.52046	NA	intron (NM_028162, intron 2 of 21)	intron (NM_028162, intron 2 of 21)	131893	NM_001285993	72238	Mm.120650	NM_028162	ENSMUSG00000023923	Tbc1d5	1600014N05Rik	TBC1 domain family, member 5	protein-coding	0.005000	0.243781	-27(AATGATTTATGCATA,+,0.00),-27(AATGATTTATGCATA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1384	chr2	59625794	59625994	+	-0.52046	NA	intron (NM_198294, intron 1 of 26)	intron (NM_198294, intron 1 of 26)	13852	NM_198294	66860	Mm.27917	NM_198294	ENSMUSG00000035168	Tanc1	1200003E16Rik|Tanc|mKIAA1728	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1	protein-coding	0.015000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-2612	chr9	119731759	119731959	+	-0.52046	NA	Intergenic	Intergenic	-12827	NM_009134	20264	Mm.247042	NM_009134	ENSMUSG00000034533	Scn10a	Nav1.8|PN3|SNS	sodium channel, voltage-gated, type X, alpha	protein-coding	0.020000	0.472637			
Oct4_nocontrol_ChIP_peaks_unique-500	chr8	31150021	31150221	+	-0.52046	NA	promoter-TSS (NR_103719)	promoter-TSS (NR_103719)	-163	NR_028522	100217422		NR_028522	ENSMUSG00000088252	Snord13	MBII-136	small nucleolar RNA, C/D box 13	snoRNA	0.025000	0.398010			41(GCTTAGTTATGCAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-533	chr9	66511693	66511893	+	-0.52046	NA	exon (NM_175206, exon 2 of 2)	exon (NM_175206, exon 2 of 2)	2800	NM_175206	74165	Mm.297998	NM_175206	ENSMUSG00000050503	Fbxl22	1110004B15Rik	F-box and leucine-rich repeat protein 22	protein-coding	0.175000	0.746269			
ePOU_nocontrol_ChIP_peaks_unique-1758	chr4	53896457	53896657	+	-0.52046	NA	Intergenic	Intergenic	70512	NM_028053	52076	Mm.27184	NM_028053	ENSMUSG00000028420	Tmem38b	1600017F22Rik|AA437809|AV051057|D4Ertd89e|TRIC-B|mg33b	transmembrane protein 38B	protein-coding	0.015000	0.472637			
Oct4_nocontrol_ChIP_peaks_unique-341	chr3	28289629	28289829	+	-0.52046	NA	intron (NM_001163009, intron 1 of 30)	intron (NM_001163009, intron 1 of 30)	26515	NM_001163009	665113	Mm.126193	NM_026910	ENSMUSG00000027692	Tnik	1500031A17Rik|4831440I19Rik|AI451411|C530008O15Rik|C630040K21Rik	TRAF2 and NCK interacting kinase	protein-coding	0.000000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-1359	chr2	30415910	30416110	+	-0.52046	NA	promoter-TSS (NM_007760)	promoter-TSS (NM_007760)	-40	NM_138748	110854	Mm.275393	NM_138748	ENSMUSG00000039515	Ptpa	2610042B21Rik|C77440|N28142|PR53|Ppp2r4	protein phosphatase 2 protein activator	protein-coding	0.105000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-431	chr11	77126291	77126491	+	-0.52046	NA	intron (NM_176965, intron 9 of 17)	intron (NM_176965, intron 9 of 17)	-47954	NM_001012309	237859	Mm.156195	NM_001012309	ENSMUSG00000037958	Nsrp1	8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70	nuclear speckle regulatory protein 1	protein-coding	0.000000	0.338308			
Oct4_nocontrol_ChIP_peaks_unique-250	chr18	6764924	6765124	+	-0.52046	NA	promoter-TSS (NM_001278447)	promoter-TSS (NM_001278447)	-143	NM_001278447	19330	Mm.132802	NM_181070	ENSMUSG00000073639	Rab18	AA959686	RAB18, member RAS oncogene family	protein-coding	0.075000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-751	chr14	20734397	20734597	+	-0.52046	NA	promoter-TSS (NM_010811)	promoter-TSS (NM_010811)	65	NM_010811	17423	Mm.4084	NM_010811	ENSMUSG00000039308	Ndst2	Mndns|NDST-2	N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 2	protein-coding	0.115000	0.766169			
ePOU_nocontrol_ChIP_peaks_unique-2574	chr9	95954696	95954896	+	-0.52046	NA	promoter-TSS (NM_011916)	promoter-TSS (NM_011916)	36	NM_011916	24127	Mm.291179	NM_011916	ENSMUSG00000032410	Xrn1	Dhm2|exo|mXrn1	5'-3' exoribonuclease 1	protein-coding	0.095000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-16	chr1	36511729	36511929	+	-0.52046	NA	promoter-TSS (NM_053186)	promoter-TSS (NM_053186)	-38	NM_001331209	94218	Mm.256323	NM_053186	ENSMUSG00000001138	Cnnm3	Acdp3|Clp3|mACDP3	cyclin M3	protein-coding	0.115000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-1393	chr2	69908651	69908851	+	-0.52046	NA	intron (NM_177783, intron 1 of 38)	intron (NM_177783, intron 1 of 38)	11505	NM_177783	68795	Mm.314576	NM_177783	ENSMUSG00000044308	Ubr3	1110059H15Rik|4833421P10Rik|A130030D10Rik|AA409735|AA414972|AA422631|AI646861|AU016126|Zfp650|Znf650	ubiquitin protein ligase E3 component n-recognin 3	protein-coding	0.005000	0.298507			
ePOU_nocontrol_ChIP_peaks_unique-528	chr12	35482440	35482640	+	-0.52046	NA	Intergenic	Intergenic	52449	NM_013464	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.015000	0.383085			
Oct4_nocontrol_ChIP_peaks_unique-205	chr15	39943867	39944067	+	-0.52046	NA	promoter-TSS (NM_001347036)	promoter-TSS (NM_001347036)	27	NM_001347036	239393	Mm.39874	NM_172814	ENSMUSG00000022305	Lrp12	AI848829|C820005L12Rik|LRP-12	low density lipoprotein-related protein 12	protein-coding	0.150000	0.776119			
ePOU_nocontrol_ChIP_peaks_unique-1507	chr2	156992002	156992202	+	-0.52046	NA	promoter-TSS (NM_001355392)	promoter-TSS (NM_001355392)	9	NM_180956	29812	Mm.279256	NM_013865	ENSMUSG00000027634	Ndrg3	4833415O14Rik|AI747193|Ndr3	N-myc downstream regulated gene 3	protein-coding	0.085000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-876	chr15	55557355	55557555	+	-0.52046	NA	promoter-TSS (NM_134092)	promoter-TSS (NM_134092)	47	NM_001168250	105837	Mm.390829	NM_134092	ENSMUSG00000022369	Mtbp	AI429604|MDM2BP	Mdm2, transformed 3T3 cell double minute p53 binding protein	protein-coding	0.075000	0.557214			
ePOU_nocontrol_ChIP_peaks_unique-1559	chr3	36352305	36352505	+	-0.52046	NA	Intergenic	Intergenic	123119	NR_105976	102466786		NR_105976	ENSMUSG00000098808	Mir7009	Gm27472|mmu-mir-7009	microRNA 7009	ncRNA	0.005000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-1835	chr4	122885744	122885944	+	-0.52046	NA	5' UTR (NM_001301067, exon 1 of 13)	5' UTR (NM_001301067, exon 1 of 13)	232	NM_007598	12331	Mm.8687	NM_007598	ENSMUSG00000028656	Cap1	-	CAP, adenylate cyclase-associated protein 1 (yeast)	protein-coding	0.080000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-278	chr10	84713037	84713237	+	-0.52046	NA	intron (NM_027423, intron 23 of 27)	intron (NM_027423, intron 23 of 27)	-42911	NM_001024918	71137	Mm.79070	NM_027689	ENSMUSG00000020037	Rfx4	4933412G19Rik|NYD-sp10	regulatory factor X, 4 (influences HLA class II expression)	protein-coding	0.015000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-713	chr13	98368097	98368297	+	-0.52046	NA	Intergenic	Intergenic	13952	NM_008242	15229	Mm.347441	NM_008242	ENSMUSG00000078302	Foxd1	AI385632|BF-2|FREAC4|Hfh10|Hfhbf2	forkhead box D1	protein-coding	0.005000	0.368159			-42(ATATGCATGACATTGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-931	chr15	96178661	96178861	+	-0.52046	NA	Intergenic	Intergenic	-4039	NR_028311	100043335	Mm.247464	NR_028311		Gm4371	EG667874|Gm8854	eukaryotic translation initiation factor 3, subunit I pseudogene	pseudo	0.010000	0.353234			51(CTTTACAAGGGAAAAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-567	chr12	71015917	71016117	+	-0.52046	NA	promoter-TSS (NM_001081195)	promoter-TSS (NM_001081195)	50	NM_001081195	238247	Mm.241601	NM_001081195	ENSMUSG00000048118	Arid4a	A630009N03|A630067N03Rik|Rbbp1	AT rich interactive domain 4A (RBP1-like)	protein-coding	0.090000	0.611940			
Oct4_nocontrol_ChIP_peaks_unique-400	chr4	133650295	133650495	+	-0.52046	NA	Intergenic	Intergenic	-16966	NM_001017968	503610	Mm.331948	NM_001017968	ENSMUSG00000037553	Zdhhc18	-	zinc finger, DHHC domain containing 18	protein-coding	0.000000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-1897	chr5	21466960	21467160	+	-0.52046	NA	intron (NM_177869, intron 7 of 7)	intron (NM_177869, intron 7 of 7)	42157	NM_177869	330050	Mm.40655	NM_177869	ENSMUSG00000047221	Fam185a	4631428I10|AI847670	family with sequence similarity 185, member A	protein-coding	0.010000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-374	chr11	39364900	39365100	+	-0.52046	NA	intron (NR_126439, intron 2 of 2)	intron (NR_126439, intron 2 of 2)	25225	NR_126439	75315	Mm.461295	NR_126439		4930553C11Rik	-	RIKEN cDNA 4930553C11 gene	ncRNA	0.000000	0.383085	39(CATGAATAATTCATT,+,0.00),39(CATGAATAATTCATT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1444	chr2	114443451	114443651	+	-0.52046	NA	Intergenic	Intergenic	211413	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0.005000	0.278607			
merged_common-425	chr19	17138209	17138409	+	-0.52046	NA	intron (NM_181348, intron 9 of 19)	intron (NM_181348, intron 9 of 19)	182191	NM_181348	353211	Mm.257354	NM_181348	ENSMUSG00000039126	Prune2	6330414G02Rik|A230083H22Rik|A330102H22Rik|Bmcc1|mKIAA0367	prune homolog 2	protein-coding	0.020000	0.467662			36(GCTTTGTAATGCAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1821	chr4	109202038	109202238	+	-0.52046	NA	exon (NM_133885, exon 1 of 23)	exon (NM_133885, exon 1 of 23)	134	NM_001346502	100273	Mm.366315	NM_133885	ENSMUSG00000028559	Osbpl9	2600011I06Rik|AU015843|Orp-9	oxysterol binding protein-like 9	protein-coding	0.085000	0.626866			
merged_common-824	chr9	44343880	44344080	+	-0.52046	NA	intron (NM_013551, intron 1 of 13)	CpG	248	NM_013551	15288	Mm.247676	NM_013551	ENSMUSG00000032126	Hmbs	PBGD|T25658|Ups|Uros1	hydroxymethylbilane synthase	protein-coding	0.105000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-596	chr12	96527000	96527200	+	-0.52046	NA	Intergenic	Intergenic	-479878	NR_103800	69423	Mm.46121	NM_027076		1700019M22Rik	-	NFX-like protein	pseudo	0.015000	0.407960			41(AACTGCATAACAATAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2286	chr7	115733050	115733250	+	-0.52046	NA	intron (NM_001025559, intron 4 of 15)	intron (NM_001025559, intron 4 of 15)	68459	NM_001277328	20679	Mm.323365	NM_011445	ENSMUSG00000051910	Sox6	AI987981|SOX-LZ	SRY (sex determining region Y)-box 6	protein-coding	0.000000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-734	chr13	110186456	110186656	+	-0.52046	NA	intron (NM_001360099, intron 2 of 4)	intron (NM_001360099, intron 2 of 4)	93650	NM_023852	67295	Mm.151600	NM_023852	ENSMUSG00000021700	Rab3c	2700062I01Rik|3110015B08Rik|3110037E15Rik|AI850886	RAB3C, member RAS oncogene family	protein-coding	0.005000	0.348259			4(TTATTCTTATTCTCAT,+,0.00),10(TTATTCTCATTCTTAT,+,0.00),16(TCATTCTTATTCTTAT,+,0.00),22(TTATTCTTATTCTTAT,+,0.00),28(TTATTCTTATTCTTAT,+,0.00),34(TTATTCTTATTCTTAT,+,0.00),40(TTATTCTTATTCTTAT,+,0.00),46(TTATTCTTATTCTTAT,+,0.00),52(TTATTCTTATTCTTAT,+,0.00),58(TTATTCTTATTCTTAT,+,0.00),64(TTATTCTTATTCTTAT,+,0.00),70(TTATTCTTATTCTTAT,+,0.00),76(TTATTCTTATTCTTAT,+,0.00),82(TTATTCTTATTCTTAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1309	chr19	45338341	45338541	+	-0.52046	NA	Intergenic	Intergenic	-25293	NM_001360126	12234	Mm.119717	NM_009771	ENSMUSG00000025217	Btrc	Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP	beta-transducin repeat containing protein	protein-coding	0.025000	0.427861			-91(ACCTTCTCATTTATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1450	chr2	117396042	117396242	+	-0.52046	NA	Intergenic	Intergenic	-53265	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.010000	0.517413			
ePOU_nocontrol_ChIP_peaks_unique-2530	chr9	59578043	59578243	+	-0.52046	NA	promoter-TSS (NM_175235)	promoter-TSS (NM_175235)	-194	NM_175235	76183	Mm.265415	NM_175235	ENSMUSG00000032297	Celf6	6330569O16Rik|Brunol6	CUGBP, Elav-like family member 6	protein-coding	0.085000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1196	chr18	42450218	42450418	+	-0.52046	NA	Intergenic	Intergenic	55721	NM_138945	18998	Mm.488204	NM_138945	ENSMUSG00000024497	Pou4f3	Brn3.1|Brn3c|ddl|dreidel	POU domain, class 4, transcription factor 3	protein-coding	0.010000	0.398010		-11(TATGAATATTCATA,+,0.00),-11(TATGAATATTCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1292	chr19	31082709	31082909	+	-0.52046	NA	promoter-TSS (NM_031249)	promoter-TSS (NM_031249)	-32	NM_031249	83410	Mm.22031	NM_031249	ENSMUSG00000053536	Cstf2t	64kDa|C77975|tCstF-64|tauCstF-64	cleavage stimulation factor, 3' pre-RNA subunit 2, tau	protein-coding	0.090000	0.582090			
Oct4_nocontrol_ChIP_peaks_unique-498	chr8	25976508	25976708	+	-0.52046	NA	exon (NM_029884, exon 1 of 18)	exon (NM_029884, exon 1 of 18)	136	NM_029884	52120	Mm.28326	NM_029884	ENSMUSG00000037260	Hgsnat	9430010M12Rik|AW208455|D8Ertd354e|Tmem76	heparan-alpha-glucosaminide N-acetyltransferase	protein-coding	0.135000	0.786070			
ePOU_nocontrol_ChIP_peaks_unique-998	chr16	39273116	39273316	+	-0.52046	NA	Intergenic	Intergenic	-84266	NR_153800	102640746		NR_153800	ENSMUSG00000116965	Gm36742	-	predicted gene, 36742	ncRNA	0.005000	0.417910			
merged_common-147	chr11	54141192	54141392	+	-0.52046	NA	Intergenic	Intergenic	40368	NM_011031	18452	Mm.3705	NM_011031	ENSMUSG00000018906	P4ha2	AA407196|C76437|P4hl	procollagen-proline, 2-oxoglutarate 4-dioxygenase (proline 4-hydroxylase), alpha II polypeptide	protein-coding	0.010000	0.393035			4(CTTTTGTTATTTATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1485	chr2	144270771	144270971	+	-0.52046	NA	promoter-TSS (NM_028984)	promoter-TSS (NM_028984)	31	NM_001199188	69178	Mm.273379	NM_024225	ENSMUSG00000027423	Snx5	0910001N05Rik|1810032P22Rik|AU019504|D2Ertd52e	sorting nexin 5	protein-coding	0.160000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-1918	chr5	35574935	35575135	+	-0.52046	NA	promoter-TSS (NM_030208)	promoter-TSS (NM_030208)	35	NM_030208	78890	Mm.98522	NM_030208	ENSMUSG00000029097	Trmt44	2310079F23Rik|Mettl19	tRNA methyltransferase 44	protein-coding	0.080000	0.651741			
merged_common-151	chr11	62625199	62625399	+	-0.52046	NA	intron (NM_198861, intron 1 of 3)	Charlie1a|DNA|hAT-Charlie	20769	NR_028541	100217444		NR_028541		Snord65	MBII-135|snoRNA135	small nucleolar RNA, C/D box 65	snoRNA	0.015000	0.422886			70(TTTCTCTTATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2496	chr9	22002701	22002901	+	-0.52046	NA	promoter-TSS (NM_001293651)	promoter-TSS (NM_001293651)	-167	NM_029939	77609	Mm.159953	NM_029939	ENSMUSG00000039632	Ccdc151	AI644415|C330001K17Rik|b2b1885Clo	coiled-coil domain containing 151	protein-coding	0.090000	0.592040			
Oct4_nocontrol_ChIP_peaks_unique-257	chr18	51363918	51364118	+	-0.52046	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	246120	NM_001081224	71373	Mm.63546	NM_001081224	ENSMUSG00000073565	Prr16	5430406M13Rik|AI607429	proline rich 16	protein-coding	0.000000	0.268657			
merged_common-415	chr18	69758323	69758523	+	-0.52046	NA	Intergenic	Intergenic	-167136	NM_201362	381175	Mm.266831	NM_201362	ENSMUSG00000038903	Ccdc68	BC046343	coiled-coil domain containing 68	protein-coding	0.000000	0.378109			
merged_common-848	chr9	119341174	119341374	+	-0.52046	NA	promoter-TSS (NM_130864)	promoter-TSS (NM_130864)	-20	NM_001357516	113868	Mm.205266	NM_130864	ENSMUSG00000036138	Acaa1a	Acaa|Acaa1|D9Ertd25e|PTL	acetyl-Coenzyme A acyltransferase 1A	protein-coding	0.050000	0.587065			
ePOU_nocontrol_ChIP_peaks_unique-1158	chr18	6516263	6516463	+	-0.52046	NA	promoter-TSS (NM_007935)	promoter-TSS (NM_007935)	-255	NM_007935	13831	Mm.312133	NM_007935	ENSMUSG00000024240	Epc1	2400007E14Rik|5730566F07Rik|A930032N02Rik|mir-1893	enhancer of polycomb homolog 1	protein-coding	0.115000	0.666667			
Oct4_nocontrol_ChIP_peaks_unique-71	chr11	3332044	3332244	+	-0.52046	NA	exon (NM_178149, exon 3 of 6)	exon (NM_178149, exon 3 of 6)	1413	NM_178149	216505	Mm.390323	NM_178149	ENSMUSG00000034614	Pik3ip1	1500004A08Rik|5830455E04Rik|Crkd|Hgfl	phosphoinositide-3-kinase interacting protein 1	protein-coding	0.100000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-2239	chr7	79668448	79668648	+	-0.52046	NA	intron (NM_029835, intron 3 of 21)	B1_Mur3|SINE|Alu	8352	NM_029835	77011	Mm.28132	NM_029835	ENSMUSG00000046591	Ticrr	5730590G19Rik|BC028450|Lrrk1	TOPBP1-interacting checkpoint and replication regulator	protein-coding	0.000000	0.462687			
merged_common-852	chrM	2495	2695	+	-0.52046	NA	NA	Intergenic	NA	NA									0.035000	0.402985			
Oct4_nocontrol_ChIP_peaks_unique-103	chr11	111766762	111766962	+	-0.52046	NA	Intergenic	Intergenic	700698	NM_008425	16518	Mm.4951	NM_008425	ENSMUSG00000041695	Kcnj2	IRK1|Kcnf1|Kir2.1	potassium inwardly-rectifying channel, subfamily J, member 2	protein-coding	0.020000	0.452736			-49(ATCAGCATGCGAATGT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-676	chr13	59840673	59840873	+	-0.52046	NA	Intergenic	Intergenic	-17626	NM_153538	214290	Mm.233082	NM_153538	ENSMUSG00000035248	Tut7	6030448M23Rik|AA420405|Tent3b|Zcchc6	terminal uridylyl transferase 7	protein-coding	0.020000	0.417910			
Oct4_nocontrol_ChIP_peaks_unique-424	chr5	109865582	109865782	+	-0.52046	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-31540	NR_027964	667213	Mm.454429	NR_027964	ENSMUSG00000105044	Gm10416	EG667213	zinc finger protein pseudogene	pseudo	0.000000	0.363184			-54(GTTTGAATAAAAATGA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique	chr1	13938425	13938625	+	-0.52046	NA	Intergenic	Lx9|LINE|L1	-151596	NR_004447	433273	Mm.304088	NR_004447	ENSMUSG00000097711	Gm5523	EG433273	glyceraldehyde-3-phosphate dehydrogenase pseudogene	pseudo	0.000000	0.412935		-8(TTTGCATATGCATG,+,0.00),-8(TTTGCATATGCATG,-,0.00)	-57(CATCTCTTATTCAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-392	chr4	100913753	100913953	+	-0.52046	NA	intron (NM_198037, intron 3 of 26)	intron (NM_198037, intron 3 of 26)	137174	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	0.010000	0.432836		66(TATGAATATTCATG,+,0.00),66(TATGAATATTCATG,-,0.00)	
merged_common-788	chr8	60215602	60215802	+	-0.52046	NA	Intergenic	Intergenic	-290422	NM_011834	23923	Mm.35020	NM_011834	ENSMUSG00000057228	Aadat	AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2	aminoadipate aminotransferase	protein-coding	0.005000	0.333333			-74(ATTTGAATGATAATGC,-,0.00),10(TTTTGCATCAGAAAGA,-,0.00),80(ACCCTGTTATGGAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2560	chr9	81712898	81713098	+	-0.52046	NA	Intergenic	L1MA5|LINE|L1	-79166	NM_010482	15551	Mm.445308	NM_010482	ENSMUSG00000049511	Htr1b	5-HT-1B	5-hydroxytryptamine (serotonin) receptor 1B	protein-coding	0.010000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-1324	chr2	3174948	3175148	+	-0.52046	NA	intron (NM_001347067, intron 1 of 7)	intron (NM_001347067, intron 1 of 7)	56363	NM_001347067	269233	Mm.23044	NM_001081161	ENSMUSG00000050530	Fam171a1	9630050M13Rik|AA409679	family with sequence similarity 171, member A1	protein-coding	0.010000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-2348	chr8	13194619	13194819	+	-0.52046	NA	intron (NM_001368858, intron 2 of 8)	intron (NM_001368858, intron 2 of 8)	-5621	NR_035494	100316713		NR_035494	ENSMUSG00000088054	Mir1968	mir-1968|mmu-mir-1968	microRNA 1968	ncRNA	0.010000	0.383085			8(GTTTAAAAGAAAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2317	chr7	132576241	132576441	+	-0.52046	NA	promoter-TSS (NM_016978)	promoter-TSS (NM_016978)	57	NM_016978	18242	Mm.13694	NM_016978	ENSMUSG00000030934	Oat	AI194874|rhg	ornithine aminotransferase	protein-coding	0.120000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-1655	chr3	108227084	108227284	+	-0.52046	NA	promoter-TSS (NM_008596)	promoter-TSS (NM_008596)	-585	NM_008596	17306	Mm.316885	NM_008596	ENSMUSG00000027887	Sypl2	AI552439|Mg29	synaptophysin-like 2	protein-coding	0.035000	0.373134			-21(ATTTAAATGAGAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-803	chr14	76222021	76222221	+	-0.52046	NA	Intergenic	Intergenic	-29341	NR_152108	72893	Mm.233565	NR_152108		2900040C04Rik	-	RIKEN cDNA 2900040C04 gene	ncRNA	0.005000	0.402985	6(CTTGAATAATTTATT,+,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-39	chr1	184034131	184034331	+	-0.52046	NA	promoter-TSS (NM_028516)	promoter-TSS (NM_028516)	-150	NM_022019	63953	Mm.404024	NM_022019	ENSMUSG00000039384	Dusp10	2610306G15Rik|AI158871|MKP-5|MKP5	dual specificity phosphatase 10	protein-coding	0.075000	0.597015			
ePOU_nocontrol_ChIP_peaks_unique-1100	chr17	36958373	36958573	+	-0.52046	NA	promoter-TSS (NM_001368424)	promoter-TSS (NM_001368424)	-45	NM_023162	66136	Mm.486229	NM_023162	ENSMUSG00000036315	Znrd1	1110014N07Rik|Rpa12	zinc ribbon domain containing 1	protein-coding	0.080000	0.601990			
merged_common-494	chr2	115065451	115065651	+	-0.52519	NA	Intergenic	Intergenic	278729	NR_040516	78193	Mm.189508	NR_040516	ENSMUSG00000087309	4930528P14Rik	-	RIKEN cDNA 4930528P14 gene	ncRNA	0.000000	0.407960			
merged_common-215	chr12	94293558	94293758	+	-0.52519	NA	Intergenic	Intergenic	366320	NR_106175	102465890		NR_106175	ENSMUSG00000098498	Mir8099-1	Gm27917|mmu-mir-8099-1	microRNA 8099-1	ncRNA	0.020000	0.323383	-30(TATGAATAATGCATA,+,0.00),-30(TATGAATAATGCATA,-,0.00)		
merged_common-602	chr4	94482820	94483020	+	-0.52519	NA	Intergenic	Lx7|LINE|L1	73876	NM_026368	67770	Mm.35170	NM_026368	ENSMUSG00000028578	Caap1	5830433M19Rik|AI536248|CAAP	caspase activity and apoptosis inhibitor 1	protein-coding	0.000000	0.492537		-11(TATGCATATTCATG,+,0.00),-11(TATGCATATTCATG,-,0.00)	
merged_common-640	chr5	48326397	48326597	+	-0.52519	NA	Intergenic	MTD|LTR|ERVL-MaLR	-45895	NM_025755	66768	Mm.29409	NM_025755	ENSMUSG00000029089	Pacrgl	4933428G09Rik	PARK2 co-regulated-like	protein-coding	0.000000	0.393035		-9(CCTTCATATGCATA,+,0.00)	-25(ATTAACATAAGAAAAT,-,0.00)
merged_common-683	chr6	23003321	23003521	+	-0.52519	NA	3' UTR (NM_011219, exon 12 of 12)	3' UTR (NM_011219, exon 12 of 12)	127919	NM_011219	19283	Mm.41639	NM_011219	ENSMUSG00000068748	Ptprz1	AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta	protein tyrosine phosphatase, receptor type Z, polypeptide 1	protein-coding	0.010000	0.328358		-7(CATGAATATGCATA,+,0.00),-7(CATGAATATGCATA,-,0.00)	
merged_common-406	chr18	49770466	49770666	+	-0.52519	NA	Intergenic	(TATATG)n|Simple_repeat|Simple_repeat	-14965	NM_001170960	68857	Mm.96010	NM_026854	ENSMUSG00000024505	Dtwd2	1190002H09Rik|8030470C17Rik|AI414673|BB115449	DTW domain containing 2	protein-coding	0.000000	0.308458			-14(ATATGTATCACAATGC,-,0.00),27(ATCTGTATCACAATGC,-,0.00),65(ATCTGTATAACAATAC,-,0.00)
merged_common-59	chr1	161219554	161219754	+	-0.55139	NA	Intergenic	Intergenic	31556	NR_130150	11758	Mm.186185	NM_007453	ENSMUSG00000026701	Prdx6	1-Cys Prx|1-cysPrx|9430088D19Rik|AA690119|Aop2|Brp-12|CP-3|GPx|Ltw-4|Ltw4|Lvtw-4|NSGPx|ORF06|Prdx5|aiPLA2	peroxiredoxin 6	protein-coding	0.005000	0.378109		50(CATAAAAATGCATA,+,0.00)	-11(TTTTGCATGAAAATAG,-,0.00)
merged_common-21	chr1	65370979	65371179	+	-0.55139	NA	intron (NM_139270, intron 9 of 12)	L1M3|LINE|L1	59822	NM_139270	213527	Mm.294225	NM_139270	ENSMUSG00000025946	Pth2r	Pthr2	parathyroid hormone 2 receptor	protein-coding	0.005000	0.378109			-39(CCGTTGTTATGCAGAC,+,0.00)
merged_common-860	chrX	98920044	98920244	+	-0.55139	NA	Intergenic	L1_Mur3|LINE|L1	-17637	NM_207633	77929	Mm.212290	NM_207633	ENSMUSG00000047694	Yipf6	A430107J06Rik	Yip1 domain family, member 6	protein-coding	0.010000	0.393035			-81(GTTTTTTTTTGTAGAT,+,0.00),25(CCTTTGTTATGCAGAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-81	chr11	51274536	51274736	+	-0.55139	NA	intron (NM_001362540, intron 5 of 12)	intron (NM_001362540, intron 5 of 12)	-10974	NM_001358281	193286	Mm.80975	NM_177567	ENSMUSG00000045942	BC049762	4930503F14	cDNA sequence BC049762	protein-coding	0.000000	0.398010			-38(GTATTGTTATGTAAAT,+,0.00),45(TCTTTGTCATTGAACT,+,0.00)
merged_common-777	chr8	28487844	28488044	+	-0.55139	NA	Intergenic	MLTR25A|LTR|ERVK	-403091	NR_033590	666422	Mm.484413	NR_033590	ENSMUSG00000110372	Gm8096	EG666422	3-phosphoglycerate dehydrogenase pseudogene	pseudo	0.005000	0.368159			
merged_common-328	chr16	33694426	33694626	+	-0.55139	NA	intron (NM_175256, intron 1 of 14)	intron (NM_175256, intron 1 of 14)	10060	NM_175256	77446	Mm.245741	NM_172934	ENSMUSG00000075254	Heg1	4632417D23Rik|5530401I02Rik|9530025L16Rik|BC038614|Gm629	heart development protein with EGF-like domains 1	protein-coding	0.015000	0.442786			
Oct4_nocontrol_ChIP_peaks_unique-190	chr14	103093360	103093560	+	-0.55139	NA	intron (NM_001347601, intron 2 of 4)	intron (NM_001347601, intron 2 of 4)	5544	NM_001360341	50789	Mm.214746	NM_015822	ENSMUSG00000022124	Fbxl3	AU041772|AW212966|FBK|Fbl3a|Fbxl3a|Ovtm|Play68	F-box and leucine-rich repeat protein 3	protein-coding	0.010000	0.412935		-9(CATTCATATGCAGG,+,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-520	chr8	108497956	108498156	+	-0.55139	NA	Intergenic	Intergenic	86621	NR_077224	109215	Mm.65282	NR_077224	ENSMUSG00000110613	Lncbate1	3010033K07Rik|Lnc-BATE1	brown adipose tissue enriched long non-coding RNA 1	ncRNA	0.000000	0.343284		-21(TATAAATATGAATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1674	chr3	120000309	120000509	+	-0.55139	NA	Intergenic	Intergenic	-217021	NM_001310711	56195	Mm.29966	NM_019550	ENSMUSG00000028134	Ptbp2	Ptb2|brPTB|nPTB	polypyrimidine tract binding protein 2	protein-coding	0.010000	0.417910			-33(AAATTGTTGTGGAAAT,+,0.00)
merged_common-46	chr1	133397664	133397864	+	-0.55139	NA	intron (NM_011439, intron 1 of 13)	intron (NM_011439, intron 1 of 13)	26448	NM_011439	20668	Mm.8575	NM_011439	ENSMUSG00000070643	Sox13	AA407916|AW259412|AW540933|Sox-13	SRY (sex determining region Y)-box 13	protein-coding	0.030000	0.507463			-44(AATTACATAACAAACA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1082	chr17	27954214	27954414	+	-0.55139	NA	intron (NM_181413, intron 1 of 24)	intron (NM_181413, intron 1 of 24)	45008	NM_001286041	224650	Mm.32556	NM_181413	ENSMUSG00000024219	Anks1	Anks1a|mKIAA0229	ankyrin repeat and SAM domain containing 1	protein-coding	0.025000	0.427861		25(CGTGCATATGCATA,+,0.00),25(CGTGCATATGCATA,-,0.00),31(TATGCATATGCATA,+,0.00),31(TATGCATATGCATA,-,0.00),37(TATGCATATGCATA,+,0.00),37(TATGCATATGCATA,-,0.00)	
merged_common-522	chr3	32852723	32852923	+	-0.55139	NA	intron (NM_001013024, intron 3 of 20)	intron (NM_001013024, intron 3 of 20)	35197	NM_001013024	72607	Mm.316153	NM_001013024	ENSMUSG00000056900	Usp13	2700071E21Rik|AI848077|ISOT3|IsoT-3	ubiquitin specific peptidase 13 (isopeptidase T-3)	protein-coding	0.020000	0.427861			
merged_common-573	chr4	13908569	13908769	+	-0.55139	NA	Intergenic	L1MA6|LINE|L1	123887	NM_009822	12395	Mm.4909	NM_009822	ENSMUSG00000006586	Runx1t1	Cbfa2t1h|ETO|MTG8	RUNX1 translocation partner 1	protein-coding	0.000000	0.348259			
merged_common-485	chr2	85047833	85048033	+	-0.55139	NA	TTS (NM_182990)	TTS (NM_182990)	-2527	NM_001081260	228140	Mm.23606	NM_001081260	ENSMUSG00000033955	Tnks1bp1	Tab182|mKIAA1741	tankyrase 1 binding protein 1	protein-coding	0.055000	0.522388		-48(CATGAATAATTATG,+,0.00),39(TATGAATATTCATG,+,0.00),39(TATGAATATTCATG,-,0.00)	
merged_common-483	chr2	75200521	75200721	+	-0.55139	NA	Intergenic	Intergenic	243558	NR_040635	77269	Mm.389278	NR_040635		9430019J16Rik	-	RIKEN cDNA 9430019J16 gene	ncRNA	0.000000	0.328358		12(TATTCATATTCATT,+,0.00),12(TATTCATATTCATT,-,0.00),31(TATGCATATGCAAC,+,0.00),31(TATGCATATGCAAC,-,0.00)	15(TCATATTCATTCAAAA,+,0.00)
merged_common-319	chr16	15958681	15958881	+	-0.55139	NA	intron (NM_001355731, intron 9 of 18)	intron (NM_001355731, intron 9 of 18)	71495	NM_007679	12609	Mm.347407	NM_007679	ENSMUSG00000071637	Cebpd	c/EBPdelta	CCAAT/enhancer binding protein (C/EBP), delta	protein-coding	0.010000	0.412935			
merged_common-176	chr11	108181117	108181317	+	-0.55139	NA	intron (NM_011101, intron 3 of 16)	intron (NM_011101, intron 3 of 16)	162671	NM_011101	18750	Mm.222178	NM_011101	ENSMUSG00000050965	Prkca	AI875142|Pkca	protein kinase C, alpha	protein-coding	0.015000	0.457711		39(CATGCATATGCATG,+,0.00),39(CATGCATATGCATG,-,0.00)	
merged_common-629	chr5	20264315	20264515	+	-0.58595	NA	intron (NM_015823, intron 5 of 21)	U6|snRNA|snRNA	356897	NM_015823	50791	Mm.332231	NM_015823	ENSMUSG00000040003	Magi2	AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705	membrane associated guanylate kinase, WW and PDZ domain containing 2	protein-coding	0.015000	0.398010		-5(TATGCATATTCATG,+,0.00),-5(TATGCATATTCATG,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-115	chr12	39921449	39921649	+	-0.59127	NA	Intergenic	(CATATA)n|Simple_repeat|Simple_repeat	115827	NM_007487	11861	Mm.12723	NM_007487	ENSMUSG00000047446	Arl4a	AI467555|Arl4	ADP-ribosylation factor-like 4A	protein-coding	0.010000	0.383085		-41(AATGAATATATATG,-,0.00),-37(AATATATATGCATA,+,0.00),-37(AATATATATGCATA,-,0.00),-31(TATGCATAGGCATA,+,0.00),-31(TATGCATAGGCATA,-,0.00)	
merged_common-128	chr11	5098867	5099067	+	-0.59127	NA	promoter-TSS (NM_001290492)	promoter-TSS (NM_001290492)	129	NM_001362618	14030	Mm.142822	NM_007968	ENSMUSG00000009079	Ewsr1	Ews|Ewsh	Ewing sarcoma breakpoint region 1	protein-coding	0.115000	0.666667			
merged_common-582	chr4	44741847	44742047	+	-0.59127	NA	Intergenic	L1M4|LINE|L1	-14612	NM_138590	319885	Mm.331576	NM_138590	ENSMUSG00000035649	Zcchc7	4930572I07Rik|D4Wsu132e	zinc finger, CCHC domain containing 7	protein-coding	0.010000	0.378109			
merged_common-801	chr8	92866021	92866221	+	-0.59127	NA	intron (NM_001357374, intron 2 of 11)	intron (NM_001357374, intron 2 of 11)	10788	NM_173014	270084	Mm.21463	NM_173014	ENSMUSG00000033192	Lpcat2	1-AGPAT 11|A330042H22|Aytl1|Aytl1a|lpafat1|lysoPAFAT|lysoPAFAT/LPCAT2	lysophosphatidylcholine acyltransferase 2	protein-coding	0.000000	0.373134		-59(TATTCATATGCATG,+,0.00),-59(TATTCATATGCATG,-,0.00)	
merged_common-584	chr4	53352662	53352862	+	-0.59127	NA	Intergenic	RLTR12E|LTR|ERVK	-82530	NR_033139	381524	Mm.23351	NM_001033454	ENSMUSG00000086712	AI427809	Gm1659|MeXis	expressed sequence AI427809	ncRNA	0.000000	0.328358		-45(TATACATATACATA,-,0.00)	8(GTATTCTTATGCTGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1271	chr19	16009949	16010149	+	-0.59127	NA	intron (NR_045355, intron 2 of 2)	intron (NR_045355, intron 2 of 2)	24974	NR_045355	100502653	Mm.149980	NR_045355	ENSMUSG00000097557	C130060C02Rik	-	RIKEN cDNA C130060C02 gene	ncRNA	0.005000	0.388060			
merged_common-419	chr18	83908905	83909105	+	-0.59127	NA	Intergenic	Intergenic	177460	NM_001081300	110796	Mm.102136	NM_001081300	ENSMUSG00000046982	Tshz1	5730407I04Rik|D18Bwg1409e|Mtsh1|NY-CO-33|Sdccag33|Tsh1|teashirt1	teashirt zinc finger family member 1	protein-coding	0.010000	0.373134			5(TCTTTGTTATGCATAA,+,0.00)
merged_common-337	chr16	77352188	77352388	+	-0.59127	NA	intron (NR_015543, intron 1 of 4)	Lx9|LINE|L1	22960	NR_015543	77994	Mm.394688	NR_015543	ENSMUSG00000090386	Mir99ahg	2810055G20Rik|D730043B02Rik	Mir99a and Mirlet7c-1 host gene (non-protein coding)	ncRNA	0.015000	0.323383		34(CATGCATATGTATA,+,0.00),34(CATGCATATGTATA,-,0.00),40(TATGTATATACATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1502	chr2	153161315	153161515	+	-0.59127	NA	5' UTR (NM_133847, exon 1 of 18)	5' UTR (NM_133847, exon 1 of 18)	114	NM_133847	99237	Mm.330674	NM_133847	ENSMUSG00000068040	Tm9sf4	AA986553|AU045326|B930079E06|mKIAA0255	transmembrane 9 superfamily protein member 4	protein-coding	0.030000	0.502488			
merged_common-391	chr18	16478081	16478281	+	-0.59127	NA	Intergenic	Intergenic	331065	NM_007664	12558	Mm.257437	NM_007664	ENSMUSG00000024304	Cdh2	CDHN|N-CAD|Ncad	cadherin 2	protein-coding	0.005000	0.407960			26(AATTACATGAAAATTC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1773	chr4	66726350	66726550	+	-0.59127	NA	Intergenic	Intergenic	-101101	NM_021297	21898	Mm.38049	NM_021297	ENSMUSG00000039005	Tlr4	Lps|Ly87|Ran/M1|Rasl2-8	toll-like receptor 4	protein-coding	0.000000	0.273632			
Oct4_nocontrol_ChIP_peaks_unique-131	chr12	111143089	111143289	+	-0.59127	NA	Intergenic	L1M4|LINE|L1	-23181	NM_011632	22031	Mm.27431	NM_011632	ENSMUSG00000021277	Traf3	AI528849|CAP-1|CD40bp|CRAF1|LAP1|T-BAM|TRAFAMN|amn	TNF receptor-associated factor 3	protein-coding	0.020000	0.497512		8(TATGAATATGCATG,+,0.00),8(TATGAATATGCATG,-,0.00)	
merged_common-88	chr10	25029500	25029700	+	-0.59127	NA	Intergenic	Intergenic	-102130	NM_007482	11846	Mm.154144	NM_007482	ENSMUSG00000019987	Arg1	AI|AI256583|Arg-1|PGIF	arginase, liver	protein-coding	0.015000	0.427861			-37(ATTTGCATAAGAATAA,-,0.00),-7(ATTTGCATAAGAATAG,-,0.00)
merged_common-129	chr11	6334199	6334399	+	-0.59127	NA	intron (NM_001361902, intron 5 of 23)	intron (NM_001361902, intron 5 of 23)	41720	NM_001361902	18293	Mm.276348	NM_010956	ENSMUSG00000020456	Ogdh	2210403E04Rik|2210412K19Rik|AA409584|d1401|mKIAA4192	oxoglutarate (alpha-ketoglutarate) dehydrogenase (lipoamide)	protein-coding	0.005000	0.268657			
merged_common-433	chr19	34195928	34196128	+	-0.59127	NA	intron (NM_001360718, intron 1 of 10)	intron (NM_001360718, intron 1 of 10)	3094	NM_001360717	76630	Mm.130952	NM_029682	ENSMUSG00000024776	Stambpl1	1700095N21Rik|8230401J17Rik|ALMalpha|AMSH-FP	STAM binding protein like 1	protein-coding	0.005000	0.368159			-16(TTATTCTCTTTCTAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-312	chr2	104220167	104220367	+	-0.59127	NA	intron (NM_001368844, intron 11 of 20)	intron (NM_001368844, intron 11 of 20)	97498	NM_026634	68243	Mm.158191	NM_026634	ENSMUSG00000032671	A930018P22Rik	-	RIKEN cDNA A930018P22 gene	protein-coding	0.030000	0.497512			
merged_common-514	chr2	170193392	170193592	+	-0.59127	NA	non-coding (NR_157067, exon 2 of 2)	non-coding (NR_157067, exon 2 of 2)	561	NR_157067	100502923	Mm.44078	NR_157067	ENSMUSG00000097514	Gm17619	-	predicted gene, 17619	ncRNA	0.015000	0.452736			58(GCATTTTAATTTAAAT,+,0.00)
merged_common-76	chr1	187514116	187514316	+	-0.59127	NA	Intergenic	Intergenic	-94790	NM_001243792	26381	Mm.89989	NM_011935	ENSMUSG00000026610	Esrrg	ERR3|Errg|NR3B3|mKIAA0832	estrogen-related receptor gamma	protein-coding	0.005000	0.333333		-31(AATAAATATTCATA,+,0.00),-31(AATAAATATTCATA,-,0.00)	-26(ATATTCATAACAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2031	chr6	13449336	13449536	+	-0.59127	NA	Intergenic	Intergenic	36099	NR_038149	69413	Mm.177847	NR_038149	ENSMUSG00000101894	1700016P04Rik	-	RIKEN cDNA 1700016P04 gene	ncRNA	0.005000	0.358209			
merged_common-839	chr9	81992978	81993178	+	-0.59127	NA	intron (NM_001357477, intron 4 of 4)	intron (NM_001357477, intron 4 of 4)	129408	NM_175213	75033	Mm.335329	NM_175213	ENSMUSG00000043289	Mei4	4930486G11Rik	meiotic double-stranded break formation protein 4	protein-coding	0.005000	0.363184			
merged_common-171	chr11	101934543	101934743	+	-0.61110	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-17778	NR_045806	73887	Mm.159084	NR_045806	ENSMUSG00000071818	4930417O22Rik	-	RIKEN cDNA 4930417O22 gene	ncRNA	0.005000	0.293532		-36(TTTGTATATGCATA,+,0.00),-20(TGTGCATATGCATA,+,0.00),-20(TGTGCATATGCATA,-,0.00),53(TATATATATGCATA,+,0.00)	
merged_common-620	chr4	150446615	150446815	+	-0.61110	NA	intron (NM_001085492, intron 4 of 22)	intron (NM_001085492, intron 4 of 22)	164799	NM_001085492	68703	Mm.291274	NM_001085492	ENSMUSG00000039852	Rere	1110033A15Rik|AI414665|ARG|ARP|ATN1L|AW742570|Atr2|DNB1|eye<m03Jus>|eyes3|mKIAA0458	arginine glutamic acid dipeptide (RE) repeats	protein-coding	0.015000	0.522388			
merged_common-219	chr12	108396182	108396382	+	-0.61110	NA	intron (NM_001286346, intron 1 of 21)	intron (NM_001286346, intron 1 of 21)	-14351	NM_001286347	68519	Mm.236645	NM_001043335	ENSMUSG00000058070	Eml1	1110008N23Rik|A930030P13Rik|AA171013|AI847476|AI853955|ELP79|EMAP|EMAP-1|EMAPL|heco	echinoderm microtubule associated protein like 1	protein-coding	0.015000	0.512438	-11(CATCAATTATGCATT,+,0.00),-11(CATCAATTATGCATT,-,0.00)	-33(CATGAATATTCATA,+,0.00),-33(CATGAATATTCATA,-,0.00)	
merged_common-175	chr11	107019709	107019909	+	-0.62972	NA	Intergenic	L1ME4a|LINE|L1	-8414	NM_001163473	69066	Mm.40679	NM_001163473	ENSMUSG00000078607	1810010H24Rik	-	RIKEN cDNA 1810010H24 gene	protein-coding	0.000000	0.273632	67(TATGCATAATTTATG,+,0.00),67(TATGCATAATTTATG,-,0.00)		-85(ATATATATAACAAAGA,-,0.00)
merged_common-36	chr1	95621318	95621518	+	-0.65433	NA	intron (NM_009183, intron 4 of 4)	intron (NM_009183, intron 4 of 4)	46176	NM_009183	20452	Mm.306228	NM_009183	ENSMUSG00000040710	St8sia4	PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4	protein-coding	0.005000	0.343284			
merged_common-237	chr13	56648122	56648322	+	-0.65433	NA	Intergenic	Intergenic	38636	NM_009369	21810	Mm.14455	NM_009369	ENSMUSG00000035493	Tgfbi	68kDa|AI181842|AI747162|Beta-ig|big-h3	transforming growth factor, beta induced	protein-coding	0.000000	0.487562			41(TCTCTGTGATTTTAAT,+,0.00)
merged_common-692	chr6	39400343	39400543	+	-0.65433	NA	exon (NM_001311109, exon 6 of 8)	exon (NM_001311109, exon 6 of 8)	19090	NM_011226	19331	Mm.123866	NM_011226	ENSMUSG00000029923	Rab19	-	RAB19, member RAS oncogene family	protein-coding	0.030000	0.517413			
Oct4_nocontrol_ChIP_peaks_unique-411	chr5	16211417	16211617	+	-0.65437	NA	intron (NM_001110843, intron 5 of 38)	intron (NM_001110843, intron 5 of 38)	276826	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.005000	0.318408			-8(ATTACAATGAAAATCC,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-110	chr12	13248287	13248487	+	-0.65437	NA	intron (NM_134040, intron 1 of 25)	intron (NM_134040, intron 1 of 25)	787	NM_134040	104721	Mm.251255	NM_134040	ENSMUSG00000037149	Ddx1	AA409185|DBP-RB	DEAD (Asp-Glu-Ala-Asp) box polypeptide 1	protein-coding	0.005000	0.333333			
Oct4_nocontrol_ChIP_peaks_unique-306	chr2	71121073	71121273	+	-0.65437	NA	intron (NM_028593, intron 1 of 3)	B3|SINE|B2	3119	NM_028593	73649	Mm.45435	NM_028593	ENSMUSG00000027015	Cybrd1	2210407P13Rik|Dcytb	cytochrome b reductase 1	protein-coding	0.025000	0.402985			61(ACATACTTATGGAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-421	chr5	78933605	78933805	+	-0.65437	NA	Intergenic	RLTR22_Mur|LTR|ERVK	1468217	NR_131050	69370	Mm.426881	NR_131050	ENSMUSG00000107232	1700017L05Rik	-	RIKEN cDNA 1700017L05 gene	ncRNA	0.005000	0.383085			
merged_common-69	chr1	177263154	177263354	+	-0.65437	NA	Intergenic	L1MA4|LINE|L1	-14487	NM_011785	23797	Mm.235194	NM_011785	ENSMUSG00000019699	Akt3	AI851531|D930002M15Rik|Nmf350	thymoma viral proto-oncogene 3	protein-coding	0.005000	0.318408			
ePOU_nocontrol_ChIP_peaks_unique-1942	chr5	74144730	74144930	+	-0.65437	NA	Intergenic	Intergenic	-50496	NM_026878	68939	Mm.293316	NM_026878	ENSMUSG00000049907	Rasl11b	1190017B18Rik	RAS-like, family 11, member B	protein-coding	0.005000	0.358209			80(TGTTTGTTATGCACAC,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1441	chr2	113169639	113169839	+	-0.65437	NA	intron (NM_001319156, intron 1 of 103)	L1ME1|LINE|L1	47344	NM_001319156	20192	Mm.436657	NM_177652	ENSMUSG00000057378	Ryr3	AI851294|C230090H21|RYR-3	ryanodine receptor 3	protein-coding	0.005000	0.412935			
Oct4_nocontrol_ChIP_peaks_unique-340	chr3	23457885	23458085	+	-0.65437	NA	Intergenic	Intergenic	1206615	NR_004439	19784		NR_004439		Rprl2	RPRH3|Rmrp3	ribonuclease P RNA-like 2	ncRNA	0.005000	0.412935			-72(ACATTGTTATGCAATT,+,0.00),46(TTATTATCATGCATAG,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-80	chr11	43688742	43688942	+	-0.65437	NA	intron (NM_001363141, intron 1 of 2)	RLTR21|LTR|ERVK	6844	NM_027557	70802	Mm.397449	NM_027557	ENSMUSG00000044950	Pwwp2a	4631424J17Rik|AI891583|AU024105|D930040F23Rik	PWWP domain containing 2A	protein-coding	0.000000	0.308458	-43(CATCTATTATGTATG,+,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2313	chr7	127708300	127708500	+	-0.65437	NA	promoter-TSS (NR_030428)	promoter-TSS (NR_030428)	-87	NR_030428	791073		NR_030428	ENSMUSG00000076454	Mir762	Mirn762|mir-762|mmu-mir-762	microRNA 762	ncRNA	0.075000	0.661692			
merged_common-118	chr10	97298029	97298229	+	-0.65437	NA	Intergenic	Intergenic	-125349	NR_039547	100628616		NR_039547	ENSMUSG00000105557	Mir3966	mmu-mir-3966|mu-mir-3966	microRNA 3966	ncRNA	0.005000	0.383085		39(TGTGCATATTCATG,+,0.00),39(TGTGCATATTCATG,-,0.00)	
merged_common-305	chr15	78119870	78120070	+	-0.65437	NA	promoter-TSS (NM_007583)	promoter-TSS (NM_007583)	-690	NM_007583	12300	Mm.277338	NM_007583	ENSMUSG00000019146	Cacng2	AW060990|B230105C07Rik|B930041E13Rik|stargazer|stargazin|stg|wag|waggler	calcium channel, voltage-dependent, gamma subunit 2	protein-coding	0.090000	0.666667			
Oct4_nocontrol_ChIP_peaks_unique-92	chr11	95824348	95824548	+	-0.65437	NA	promoter-TSS (NM_153104)	promoter-TSS (NM_153104)	-52	NM_153104	237928	Mm.133075	NM_153104	ENSMUSG00000050860	Phospho1	D11Moh36|Phospo1	phosphatase, orphan 1	protein-coding	0.145000	0.786070			
merged_common-563	chr3	136833052	136833252	+	-0.65437	NA	intron (NM_001293622, intron 2 of 12)	intron (NM_001293622, intron 2 of 12)	163086	NM_001293622	19055	Mm.331389	NM_008913	ENSMUSG00000028161	Ppp3ca	2900074D19Rik|CN|Caln|Calna|CnA	protein phosphatase 3, catalytic subunit, alpha isoform	protein-coding	0.005000	0.398010			
merged_common-344	chr16	93771865	93772065	+	-0.65437	NA	intron (NM_027293, intron 20 of 36)	intron (NM_027293, intron 20 of 36)	22936	NR_151466	102633000	Mm.443436	NR_151466		2310043M15Rik	-	RIKEN cDNA 2310043M15 gene	ncRNA	0.010000	0.338308	-22(CATGAATGATGCAAA,+,0.00)		-11(CAAATGTCATGCAAAT,+,0.00)
merged_common-650	chr5	92083760	92083960	+	-0.65437	NA	promoter-TSS (NM_001080796)	promoter-TSS (NM_001080796)	-116	NM_011816	23881	Mm.290530	NM_011816	ENSMUSG00000029405	G3bp2	AA409541|E430034L04Rik|G3BP|mKIAA0660	GTPase activating protein (SH3 domain) binding protein 2	protein-coding	0.120000	0.666667			
merged_common-515	chr2	174076073	174076273	+	-0.65437	NA	promoter-TSS (NM_001102423)	promoter-TSS (NM_001102423)	-129	NM_001363030	228960	Mm.277977	NM_172675	ENSMUSG00000027522	Stx16	4930401D03|5430410K23Rik|6330500A18Rik|AI648908|AW553605|Syn16	syntaxin 16	protein-coding	0.060000	0.611940			
Oct4_nocontrol_ChIP_peaks_unique-292	chr2	7977011	7977211	+	-0.65437	NA	Intergenic	Intergenic	-580913	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.005000	0.338308			64(ATTTGAATAGCAGTGA,-,0.00)
merged_common-17	chr1	58586443	58586643	+	-0.65437	NA	promoter-TSS (NM_001310599)	promoter-TSS (NM_001310599)	146	NM_025597	66495	Mm.2033	NM_025597	ENSMUSG00000026032	Ndufb3	2700033I16Rik|CI-B12	NADH:ubiquinone oxidoreductase subunit B3	protein-coding	0.045000	0.487562			
merged_common-121	chr10	110485415	110485615	+	-0.65437	NA	Intergenic	Intergenic	-115135	NR_028438	109335	Mm.367727	NR_028438	ENSMUSG00000112398	9230102K24Rik	-	RIKEN cDNA 9230102K24 gene	ncRNA	0.010000	0.388060		-10(TATGCATATTCATA,+,0.00),-10(TATGCATATTCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2056	chr6	33213592	33213792	+	-0.65437	NA	Intergenic	Intergenic	-35436	NM_009148	20336	Mm.265512	NM_009148	ENSMUSG00000029763	Exoc4	C78892|Sec8|Sec8l1	exocyst complex component 4	protein-coding	0.000000	0.348259	-94(CTTGAATAATACATT,+,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-200	chr15	27483123	27483323	+	-0.65437	NA	intron (NM_020332, intron 1 of 11)	intron (NM_020332, intron 1 of 11)	16546	NM_020332	11732	Mm.265264	NM_020332	ENSMUSG00000022265	Ank	Ankh|D15Ertd221e|ank|mKIAA1581	progressive ankylosis	protein-coding	0.005000	0.368159		-40(TATGAATATTCATT,+,0.00),-40(TATGAATATTCATT,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-553	chrUn_JH584304	53800	54000	+	-0.65437	NA	non-coding (NR_003518, exon 7 of 7)	non-coding (NR_003518, exon 7 of 7)	5789	NR_003518	66776	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.000000	0.547264			
merged_common-675	chr5	147155528	147155728	+	-0.65437	NA	Intergenic	Intergenic	-33068	NM_008178	14842	Mm.4797	NM_008178	ENSMUSG00000053129	Gsx1	Gsh-1|Gsh1	GS homeobox 1	protein-coding	0.015000	0.507463			2(ATTAGCATGACAGAGG,-,0.00)
merged_common-420	chr19	3282757	3282957	+	-0.65437	NA	promoter-TSS (NM_172252)	promoter-TSS (NM_172252)	153	NM_009212	20589	Mm.3179	NM_009212	ENSMUSG00000024831	Ighmbp2	AEP|Catf1|RIPE3b1|Smbp-2|Smbp2|Smubp2|nmd|sma	immunoglobulin mu binding protein 2	protein-coding	0.090000	0.651741			
merged_common-198	chr12	41727362	41727562	+	-0.65437	NA	intron (NM_053122, intron 6 of 6)	intron (NM_053122, intron 6 of 6)	-241405	NM_010733	16981	Mm.404786	NM_010733	ENSMUSG00000036295	Lrrn3	NLRR-3	leucine rich repeat protein 3, neuronal	protein-coding	0.005000	0.393035			-7(ATTTAAATGACAAAGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-526	chr12	35341828	35342028	+	-0.65437	NA	Intergenic	Intergenic	-147031	NR_030449	751520		NR_030449	ENSMUSG00000076253	Mir680-3	Mirn680-3	microRNA 680-3	ncRNA	0.010000	0.298507			73(ATTAGCATATCAAAAT,-,0.00)
merged_common-605	chr4	105487892	105488092	+	-0.65437	NA	Intergenic	L1MB5|LINE|L1	330645	NM_080555	67916	Mm.348326	NM_080555	ENSMUSG00000028517	Plpp3	1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|PRG-2|Ppab2b|Ppap2b	phospholipid phosphatase 3	protein-coding	0.000000	0.358209			39(ATTTTCAAAATAAAAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-204	chr10	21302295	21302495	+	-0.65437	NA	intron (NM_001042593, intron 2 of 17)	intron (NM_001042593, intron 2 of 17)	6416	NM_001145209	56422	Mm.25527	NM_019702	ENSMUSG00000019977	Hbs1l	2810035F15Rik|AI326327|eRFS	Hbs1-like (S. cerevisiae)	protein-coding	0.000000	0.338308			
merged_common-376	chr17	73156627	73156827	+	-0.65437	NA	intron (NM_001081071, intron 1 of 5)	intron (NM_001081071, intron 1 of 5)	48742	NM_001081071	225010	Mm.329194	NM_001081071	ENSMUSG00000054469	Lclat1	AI181996|Agpat8|Alcat1|Gm91|Lycat	lysocardiolipin acyltransferase 1	protein-coding	0.000000	0.393035			5(CCTTTGTAATGGAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2497	chr9	23062543	23062743	+	-0.65437	NA	Intergenic	Intergenic	-160433	NM_028472	73230	Mm.335020	NM_028472	ENSMUSG00000031963	Bmper	3110056H04Rik|CV-2|Crim3|Cv2	BMP-binding endothelial regulator	protein-coding	0.005000	0.348259			30(ATCAGCATAAAAATGA,-,0.00)
merged_common-591	chr4	72647080	72647280	+	-0.65437	NA	Intergenic	Intergenic	205454	NM_001199270	353204	Mm.317892	NM_001199270	ENSMUSG00000059343	Aldoart1	4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2	aldolase 1 A, retrogene 1	protein-coding	0.000000	0.383085		-14(TATGCATATGAATG,+,0.00),-14(TATGCATATGAATG,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-285	chr19	51742726	51742926	+	-0.65437	NA	Intergenic	Intergenic	-521471	NM_008386	16333	Mm.46269	NM_008386	ENSMUSG00000035804	Ins1	Ins-1|Ins2-rs1	insulin I	protein-coding	0.000000	0.343284			-18(GAATTGTCATGCATAC,+,0.00),22(CTATTATTATACTAAT,+,0.00),74(ATATGCAAGGCAATTG,-,0.00)
merged_common-660	chr5	115158507	115158707	+	-0.65437	NA	promoter-TSS (NM_175403)	promoter-TSS (NM_175403)	-431	NM_175403	109154	Mm.153963	NM_175403	ENSMUSG00000048578	Mlec	2410014A08Rik|AI850530|ESTM19|X83352|mKIAA0152	malectin	protein-coding	0.060000	0.606965			
Oct4_nocontrol_ChIP_peaks_unique-522	chr8	118908020	118908220	+	-0.65437	NA	intron (NM_019707, intron 5 of 13)	intron (NM_019707, intron 5 of 13)	-436418	NM_024219	68196	Mm.358714	NM_024219	ENSMUSG00000031839	Hsbp1	0610007A03Rik|AA408769|Hsp25	heat shock factor binding protein 1	protein-coding	0.005000	0.328358			
merged_common-571	chr4	9613247	9613447	+	-0.65437	NA	intron (NM_001177849, intron 3 of 22)	intron (NM_001177849, intron 3 of 22)	30370	NM_001177853	65973	Mm.222206	NM_023066	ENSMUSG00000028207	Asph	2310005F16Rik|3110001L23Rik|AI848629|AW261690|AW561901|BAH|C79816|cI-37	aspartate-beta-hydroxylase	protein-coding	0.005000	0.328358		45(AATGAATATTTAAA,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-94	chr11	98234309	98234509	+	-0.65437	NA	intron (NM_026952, intron 8 of 12)	B3A|SINE|B2	-28197	NR_039579	100628613		NR_039579	ENSMUSG00000093176	Mir5119	mmu-mir-5119|mu-mir-5119	microRNA 5119	ncRNA	0.015000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-1499	chr2	152831552	152831752	+	-0.65437	NA	promoter-TSS (NM_001289739)	promoter-TSS (NM_001289739)	76	NM_009743	12048	Mm.238213	NM_009743	ENSMUSG00000007659	Bcl2l1	Bcl(X)L|Bcl-XL|Bcl2l|BclX|bcl-x|bcl2-L-1	BCL2-like 1	protein-coding	0.100000	0.641791			
Oct4_nocontrol_ChIP_peaks_unique-521	chr8	108714895	108715095	+	-0.65437	NA	5' UTR (NM_007496, exon 1 of 10)	5' UTR (NM_007496, exon 1 of 10)	351	NM_007496	11906	Mm.416972	NM_007496	ENSMUSG00000038872	Zfhx3	A230102L03Rik|Atbf1|Sci|WBP9|mKIAA4228	zinc finger homeobox 3	protein-coding	0.140000	0.751244			
merged_common-45	chr1	130462568	130462768	+	-0.65437	NA	promoter-TSS (NM_010016)	promoter-TSS (NM_010016)	76	NM_010016	13136	Mm.101591	NM_010016	ENSMUSG00000026399	Cd55	Daf|Daf-GPI|Daf1|GPI-DAF	CD55 molecule, decay accelerating factor for complement	protein-coding	0.085000	0.661692			
merged_common-246	chr13	104101491	104101691	+	-0.65437	NA	intron (NM_029447, intron 1 of 12)	intron (NM_029447, intron 1 of 12)	8023	NM_029447	75805	Mm.127692	NM_029447	ENSMUSG00000021710	Nln	4930472G13Rik|C79345	neurolysin (metallopeptidase M3 family)	protein-coding	0.005000	0.323383			52(GTTTGAATAAGAATGG,-,0.00)
merged_common-838	chr9	81555151	81555351	+	-0.65437	NA	Intergenic	Intergenic	-76679	NR_040395	319405	Mm.246494	NR_040393	ENSMUSG00000097466	D430036J16Rik	-	RIKEN cDNA D430036J16 gene	ncRNA	0.005000	0.258706			
ePOU_nocontrol_ChIP_peaks_unique-1948	chr5	81270548	81270748	+	-0.65437	NA	intron (NM_001359829, intron 2 of 23)	intron (NM_001359829, intron 2 of 23)	249055	NM_198702	319387	Mm.273631	NM_198702	ENSMUSG00000037605	Adgrl3	5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768	adhesion G protein-coupled receptor L3	protein-coding	0.000000	0.328358	58(CATACATAATACATA,+,0.00),58(CATACATAATACATA,-,0.00)	-26(TATGACTATGCATG,+,0.00),-26(TATGACTATGCATG,-,0.00)	
merged_common-592	chr4	75115905	75116105	+	-0.65437	NA	Intergenic	Intergenic	162287	NM_025849	66928	Mm.24332	NM_025849	ENSMUSG00000028398	Dmac1	1700027K24Rik|3110001D03Rik|Tmem261	distal membrane arm assembly complex 1	protein-coding	0.000000	0.343284			13(GCATTCCCTTGCTTAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-422	chr5	92520402	92520602	+	-0.65437	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-14845	NM_007644	12492	Mm.297964	NM_007644	ENSMUSG00000029426	Scarb2	9330185J12Rik|Cd36l2|LGP85|LIMP II|LIMP-2|MLGP85	scavenger receptor class B, member 2	protein-coding	0.000000	0.363184		61(CTTACATATGTATA,+,0.00)	
merged_common-626	chr4_GL456216_random	32740	32940	+	-0.65437	NA	intron (NM_001368262, intron 3 of 5)	intron (NM_001368262, intron 3 of 5)	16682	NM_001368261	236082	Mm.305345	NM_001033326	ENSMUSG00000063897	Dhrsx	C80877|D4Ertd296e|Dhrsxy|Pscad	dehydrogenase/reductase (SDR family) X chromosome	protein-coding	0.030000	0.452736		-93(TTTACATATTCATG,-,0.00),-17(TTTACATATTCATG,-,0.00),40(CGTGAATATTCATA,+,0.00),40(CGTGAATATTCATA,-,0.00)	
merged_common-523	chr3	34650803	34651003	+	-0.65437	NA	exon (NM_011443, exon 1 of 1)	exon (NM_011443, exon 1 of 1)	908	NM_011443	20674	Mm.65396	NM_011443	ENSMUSG00000074637	Sox2	Sox-2|lcc|ysb	SRY (sex determining region Y)-box 2	protein-coding	0.100000	0.706468			
merged_common-831	chr9	59486578	59486778	+	-0.65437	NA	promoter-TSS (NM_019927)	promoter-TSS (NM_019927)	-304	NM_019927	23806	Mm.305925	NM_019927	ENSMUSG00000025234	Arih1	AU021774|Ari|Ari1|Hari|Hhari|Ubch7bp|Uip77	ariadne RBR E3 ubiquitin protein ligase 1	protein-coding	0.145000	0.706468			
Oct4_nocontrol_ChIP_peaks_unique-304	chr2	56121050	56121250	+	-0.65437	NA	Intergenic	Intergenic	-664661	NR_105751	102465169		NR_105751	ENSMUSG00000098437	Mir195b	Gm27491|mmu-mir-195b	microRNA 195b	ncRNA	0.000000	0.293532			71(ATTTGCATCATACAGG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-68	chr10	99346309	99346509	+	-0.65437	NA	Intergenic	Lx9|LINE|L1	83178	NM_026268	67603	Mm.1791	NM_026268	ENSMUSG00000019960	Dusp6	1300019I03Rik|MKP-3|MKP3|PYST1	dual specificity phosphatase 6	protein-coding	0.015000	0.353234		-96(TCTGAATATGCATA,+,0.00),-96(TCTGAATATGCATA,-,0.00),-90(TATGCATATATATG,-,0.00),-68(TATGCATATACATA,+,0.00),-68(TATGCATATACATA,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-552	chr9	123925401	123925601	+	-0.65437	NA	Intergenic	CpG	43191	NM_009912	12768	Mm.274927	NM_009912	ENSMUSG00000025804	Ccr1	Cmkbr1|Mip-1a-R	chemokine (C-C motif) receptor 1	protein-coding	0.095000	0.651741			
merged_common-772	chr8	15844874	15845074	+	-0.65437	NA	Intergenic	Intergenic	323864	NR_037214	100526464		NR_037214	ENSMUSG00000093142	Mir3106	mir-3106|mmu-mir-3106	microRNA 3106	ncRNA	0.005000	0.417910			
merged_common-226	chr13	30787805	30788005	+	-0.68737	NA	Intergenic	Intergenic	38672	NM_013674	16364	Mm.4677	NM_013674	ENSMUSG00000021356	Irf4	AI385587|IRF-4|LSIRF|NF-EM5|Spip	interferon regulatory factor 4	protein-coding	0.015000	0.467662		-6(TGTGCATATTCATG,+,0.00),-6(TGTGCATATTCATG,-,0.00)	
merged_common-451	chr2	17989208	17989408	+	-0.72518	NA	Intergenic	Intergenic	7650	NM_026627	68231	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0.015000	0.457711			
merged_common-156	chr11	77893932	77894132	+	-0.73269	NA	promoter-TSS (NM_008952)	promoter-TSS (NM_008952)	-160	NM_008952	19193	Mm.8543	NM_008952	ENSMUSG00000017453	Pipox	LPIPOX|Pso	pipecolic acid oxidase	protein-coding	0.020000	0.537313			20(TTATTGTCATGCAAAT,+,0.00)
merged_common-194	chr12	33265244	33265444	+	-0.73269	NA	Intergenic	Intergenic	-37171	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.000000	0.323383			38(CCTTTGTTATTCAAAC,+,0.00)
merged_common-110	chr10	85539759	85539959	+	-0.73269	NA	intron (NM_028709, intron 1 of 16)	intron (NM_028709, intron 1 of 16)	-58552	NM_001017525	74007	Mm.36544	NM_028709	ENSMUSG00000020042	Btbd11	6330404E16Rik	BTB (POZ) domain containing 11	protein-coding	0.010000	0.487562			
merged_common-681	chr6	17490132	17490332	+	-0.73269	NA	intron (NM_008591, intron 2 of 21)	intron (NM_008591, intron 2 of 21)	26275	NM_008591	17295	Mm.86844	NM_008591	ENSMUSG00000009376	Met	AI838057|HGF|HGFR|Par4|c-Met	met proto-oncogene	protein-coding	0.005000	0.368159			4(TTTTGCATAACAATAC,-,0.00)
merged_common-10	chr1	46964235	46964435	+	-0.73269	NA	Intergenic	Intergenic	-38559	NM_001356417	227059	Mm.233889	NM_172653	ENSMUSG00000025986	Slc39a10	2900042E17Rik|5430433I10|Zip10|mKIAA1265	solute carrier family 39 (zinc transporter), member 10	protein-coding	0.015000	0.288557		86(CATGCATATGCTTA,+,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-280	chr19	32874123	32874323	+	-0.76097	NA	Intergenic	Intergenic	116646	NM_008960	19211	Mm.245395	NM_008960	ENSMUSG00000013663	Pten	2310035O07Rik|A130070J02Rik|AI463227|B430203M17Rik|MMAC1|PTENbeta|TEP1	phosphatase and tensin homolog	protein-coding	0.010000	0.432836			-86(ATCTGCATTACAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2023	chr5	148928715	148928915	+	-0.76097	NA	promoter-TSS (NM_153572)	promoter-TSS (NM_153572)	-168	NM_153572	231912	Mm.397405	NM_153572	ENSMUSG00000041298	Katnal1	-	katanin p60 subunit A-like 1	protein-coding	0.075000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-284	chr10	92458162	92458362	+	-0.76097	NA	Intergenic	Intergenic	-82889	NR_046027	627800	Mm.391417	NR_046027	ENSMUSG00000098040	Gm20757	-	predicted gene, 20757	ncRNA	0.005000	0.398010	36(TATGAATTTTACATA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-917	chr15	85671302	85671502	+	-0.76097	NA	Intergenic	CpG	-32371	NR_110483	102800312	Mm.33117	NR_110483		Lncppara	Lincppara|Mirlet7bhg|linc-Ppara	long noncoding RNA near Ppara	ncRNA	0.160000	0.751244	24(GCTGAATAATTCATG,+,0.00),24(GCTGAATAATTCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-862	chr15	40333928	40334128	+	-0.76097	NA	Intergenic	Intergenic	171421	NR_155349	102636151	Mm.321976	NR_155349	ENSMUSG00000115367	Gm33301	-	predicted gene, 33301	ncRNA	0.010000	0.303483			12(ATTGTGTTATGTAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-457	chr6	138141243	138141443	+	-0.76097	NA	promoter-TSS (NM_001347489)	promoter-TSS (NM_001347489)	-244	NM_001361309	56615	Mm.14796	NM_019946	ENSMUSG00000008540	Mgst1	1500002K10Rik|Gst	microsomal glutathione S-transferase 1	protein-coding	0.010000	0.532338			
ePOU_nocontrol_ChIP_peaks_unique-1795	chr4	89513107	89513307	+	-0.76097	NA	intron (NR_132431, intron 7 of 9)	intron (NR_132431, intron 7 of 9)	-174991	NM_175647	242523	Mm.130167	NM_175647	ENSMUSG00000043753	Dmrta1	Dmrt4	doublesex and mab-3 related transcription factor like family A1	protein-coding	0.010000	0.373134			61(TTTTTGTTTTTTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1182	chr18	33794791	33794991	+	-0.76097	NA	promoter-TSS (NR_038152)	promoter-TSS (NR_038152)	-1	NR_038152	69749	Mm.248787	NR_038151	ENSMUSG00000087590	Epb41l4aos	2410004N09Rik|Epb4.1l4aos	erythrocyte membrane protein band 4.1 like 4a, opposite strand	ncRNA	0.095000	0.671642			
merged_common-611	chr4	123573557	123573757	+	-0.76097	NA	intron (NM_001199136, intron 1 of 97)	intron (NM_001199136, intron 1 of 97)	-42763	NR_105824	102465214		NR_105824	ENSMUSG00000099005	Mir6398	Gm27657|mmu-mir-6398	microRNA 6398	ncRNA	0.000000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-2327	chr7	141392075	141392275	+	-0.76097	NA	promoter-TSS (NM_011528)	promoter-TSS (NM_011528)	15	NM_011528	21351	Mm.29182	NM_011528	ENSMUSG00000025503	Taldo1	-	transaldolase 1	protein-coding	0.090000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-2018	chr5	145140003	145140203	+	-0.76097	NA	promoter-TSS (NM_001310771)	promoter-TSS (NM_001310771)	-78	NR_156700	231887	Mm.188851	NM_001033313	ENSMUSG00000029623	Pdap1	HASPP28|PAP|PAP1	PDGFA associated protein 1	protein-coding	0.110000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-304	chr10	108014777	108014977	+	-0.76097	NA	Intergenic	Intergenic	68232	NR_131147	628877	Mm.363120	NR_131147	ENSMUSG00000112910	Gm29685	-	predicted gene, 29685	ncRNA	0.005000	0.273632			
Oct4_nocontrol_ChIP_peaks_unique-2	chr1	20820235	20820435	+	-0.76097	NA	promoter-TSS (NM_008563)	promoter-TSS (NM_008563)	-23	NM_008563	17215	Mm.4502	NM_008563	ENSMUSG00000041859	Mcm3	AL033361|C80350|Mcmd|P1|P1-MCM3|p1.m	minichromosome maintenance complex component 3	protein-coding	0.055000	0.507463			
merged_common-566	chr3	141110933	141111133	+	-0.76097	NA	Intergenic	Intergenic	101322	NM_008811	18598	Mm.4223	NM_008811	ENSMUSG00000047674	Pdha2	Pdhal	pyruvate dehydrogenase E1 alpha 2	protein-coding	0.000000	0.378109			84(ATTTGCATGATCAAAT,-,0.00)
merged_common-106	chr10	75859874	75860074	+	-0.76097	NA	intron (NM_010798, intron 1 of 2)	CpG-1170	303	NM_010798	17319	Mm.2326	NM_010798	ENSMUSG00000033307	Mif	DER6|GIF|Glif	macrophage migration inhibitory factor (glycosylation-inhibiting factor)	protein-coding	0.060000	0.666667			
Oct4_nocontrol_ChIP_peaks_unique-122	chr12	79028087	79028287	+	-0.76097	NA	promoter-TSS (NM_181073)	promoter-TSS (NM_181073)	-976	NM_181073	211945	Mm.478321	NM_181073	ENSMUSG00000060716	Plekhh1	AV308913|C77772|D630024D12Rik|mKIAA1200	pleckstrin homology domain containing, family H (with MyTH4 domain) member 1	protein-coding	0.010000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-2231	chr7	68129982	68130182	+	-0.76097	NA	intron (NM_010513, intron 2 of 20)	intron (NM_010513, intron 2 of 20)	134151	NM_030101	78444	Mm.425468	NM_030101	ENSMUSG00000030553	Pgpep1l	C330024D12Rik	pyroglutamyl-peptidase I-like	protein-coding	0.030000	0.492537			
Oct4_nocontrol_ChIP_peaks_unique-62	chr10	74805663	74805863	+	-0.76097	NA	Intergenic	Intergenic	-161414	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	0.000000	0.298507			-71(CTTGTGTCTTGTTAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-3	chr1	22204009	22204209	+	-0.76097	NA	Intergenic	Intergenic	-241459	NM_001310477	226922	Mm.336519	NM_023872	ENSMUSG00000028033	Kcnq5	7730402H11|9230107O05Rik|AA589396|D1Mgi1	potassium voltage-gated channel, subfamily Q, member 5	protein-coding	0.010000	0.358209			59(ACATTGACATTTAAAT,+,0.00)
merged_common-658	chr5	114100217	114100417	+	-0.76097	NA	promoter-TSS (NM_001033202)	promoter-TSS (NM_001033202)	-16	NM_001033202	100756	Mm.240421	NM_001033202	ENSMUSG00000029592	Usp30	6330590F17Rik|AI851327|D5Ertd483e	ubiquitin specific peptidase 30	protein-coding	0.125000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-270	chr10	80821970	80822170	+	-0.76097	NA	Intergenic	B2_Mm2|SINE|B2	-4586	NM_008753	18245	Mm.398119	NM_008753	ENSMUSG00000035242	Oaz1	AZ-1|AZ1|Antizyme|ODC-Az|Oaz	ornithine decarboxylase antizyme 1	protein-coding	0.000000	0.323383			29(TTTTTCTTATGCAGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2345	chr8	11276948	11277148	+	-0.76097	NA	intron (NR_133670, intron 1 of 52)	intron (NR_133670, intron 1 of 52)	-35757	NM_009932	12827	Mm.181021	NM_009932	ENSMUSG00000031503	Col4a2	Col4a-2	collagen, type IV, alpha 2	protein-coding	0.005000	0.353234			-62(TCATTTTTATGCAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1633	chr3	90390032	90390232	+	-0.76097	NA	promoter-TSS (NM_011988)	promoter-TSS (NM_011988)	-194	NM_001316688	26568	Mm.45519	NM_011988	ENSMUSG00000027932	Slc27a3	Acsvl3|FATP-3|FATP3|Vlcs-3	solute carrier family 27 (fatty acid transporter), member 3	protein-coding	0.020000	0.537313		-30(TGTGCATTTTCATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-834	chr14	122416418	122416618	+	-0.76097	NA	intron (NR_033326, intron 1 of 3)	intron (NR_033326, intron 1 of 3)	34597	NR_033325	328479	Mm.86095	NR_033325	ENSMUSG00000064052	Gm5089	6530402A20|C030005G22Rik|EG328479	predicted gene 5089	ncRNA	0.010000	0.447761			-32(CTTTTCTTATGTTAAT,+,0.00),10(TTATTGTCTTTTAAAA,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-133	chr12	118539298	118539498	+	-0.76097	NA	Intergenic	Intergenic	-9205	NR_045947	100384890	Mm.484658	NR_045947	ENSMUSG00000113875	D230030E09Rik	Npe	Riken cDNA D230030E09 gene	ncRNA	0.015000	0.383085			-40(ACATTGTTATACAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-491	chr11	118248618	118248818	+	-0.76097	NA	promoter-TSS (NM_011180)	promoter-TSS (NM_011180)	-126	NM_001112699	19157	Mm.86413	NM_011180	ENSMUSG00000017132	Cyth1	CLM1|CTH-1|CYTIP|Pscd1	cytohesin 1	protein-coding	0.085000	0.651741			
merged_common-555	chr3	108806134	108806334	+	-0.76097	NA	intron (NM_011504, intron 9 of 18)	intron (NM_011504, intron 9 of 18)	34268	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.005000	0.368159			6(ATTTACAAAACAACCT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1167	chr18	20811883	20812083	+	-0.76097	NA	Intergenic	B3A|SINE|B2	-65579	NM_019737	56386	Mm.393827	NM_019737	ENSMUSG00000056124	B4galt6	AA536803|AU022389	UDP-Gal:betaGlcNAc beta 1,4-galactosyltransferase, polypeptide 6	protein-coding	0.030000	0.472637			
Oct4_nocontrol_ChIP_peaks_unique-36	chr1	171329219	171329419	+	-0.76097	NA	promoter-TSS (NM_001357553)	promoter-TSS (NM_001357553)	174	NM_001128609	21945	Mm.270139	NM_011615	ENSMUSG00000013973	Dedd	CASP8IP1|DEFT|Dedpro1|FLDED1|KE05	death effector domain-containing	protein-coding	0.100000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-1169	chr18	21218599	21218799	+	-0.76097	NA	intron (NM_001033445, intron 2 of 5)	intron (NM_001033445, intron 2 of 5)	81440	NM_001033445	381126	Mm.312276	NM_001033445	ENSMUSG00000042680	Garem1	C86169|Fam59a|Garem|Gm944|mKIAA4238	GRB2 associated regulator of MAPK1 subtype 1	protein-coding	0.000000	0.343284			
merged_common-653	chr5	100039216	100039416	+	-0.76097	NA	promoter-TSS (NM_016690)	promoter-TSS (NM_016690)	-94	NR_152866	50926	Mm.389579	NM_016690	ENSMUSG00000029328	Hnrnpdl	AA407431|AA959857|D5Ertd650e|D5Wsu145e|Hnrnpdl1|Hnrpdl|JKTBP|hnRNP DL|hnRNP-DL	heterogeneous nuclear ribonucleoprotein D-like	protein-coding	0.110000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-2354	chr8	25462402	25462602	+	-0.76097	NA	Intergenic	Intergenic	-56257	NM_010206	14182	Mm.265716	NM_010206	ENSMUSG00000031565	Fgfr1	AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Fr1|Hspy|MFR|bFGF-R-1|c-fgr	fibroblast growth factor receptor 1	protein-coding	0.005000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-199	chr10	18661903	18662103	+	-0.76097	NA	intron (NM_001033258, intron 6 of 33)	intron (NM_001033258, intron 6 of 33)	-81468	NR_152783	102635639	Mm.470414	NR_152783	ENSMUSG00000111474	Gm32926	-	predicted gene, 32926	ncRNA	0.005000	0.482587			
Oct4_nocontrol_ChIP_peaks_unique-342	chr3	28805394	28805594	+	-0.76097	NA	promoter-TSS (NM_026517)	promoter-TSS (NM_026517)	-14	NR_154888	68028	Mm.21724	NM_026517	ENSMUSG00000039221	Rpl22l1	3110001N18Rik|AU041196	ribosomal protein L22 like 1	protein-coding	0.120000	0.587065			
ePOU_nocontrol_ChIP_peaks_unique-823	chr14	105300048	105300248	+	-0.76097	NA	intron (NM_001190989, intron 5 of 7)	intron (NM_001190989, intron 5 of 7)	41525	NM_029561	76273	Mm.290669	NM_029561	ENSMUSG00000053253	Ndfip2	0710001O20Rik|2810436B12Rik|9130207N19Rik|N4wbp5a|mKIAA1165	Nedd4 family interacting protein 2	protein-coding	0.010000	0.348259			54(GCTTTCTGATTGAAAG,+,0.00)
merged_common-780	chr8	36155658	36155858	+	-0.76097	NA	promoter-TSS (NR_151736)	promoter-TSS (NR_151736)	-252	NR_151736	330738	Mm.128075	NR_151736	ENSMUSG00000109704	Gm38414	A230084N10|Gm45568	predicted gene, 38414	ncRNA	0.010000	0.522388			
Oct4_nocontrol_ChIP_peaks_unique-529	chr9	36832452	36832652	+	-0.76097	NA	promoter-TSS (NM_001357614)	promoter-TSS (NM_001357614)	-188	NM_183171	235180	Mm.5264	NM_183171	ENSMUSG00000032118	Fez1	UNC-76|UNC76	fasciculation and elongation protein zeta 1 (zygin I)	protein-coding	0.025000	0.447761		13(TCTGAATATTCATG,+,0.00),13(TCTGAATATTCATG,-,0.00),72(CATAAATATTAATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-325	chr10	121468364	121468564	+	-0.76097	NA	intron (NM_138956, intron 1 of 4)	intron (NM_138956, intron 1 of 4)	7786	NM_138956	192678	Mm.41265	NM_138956	ENSMUSG00000025795	Rassf3	AW212023|AW322379	Ras association (RalGDS/AF-6) domain family member 3	protein-coding	0.025000	0.363184			
Oct4_nocontrol_ChIP_peaks_unique-214	chr15	80090974	80091174	+	-0.76097	NA	promoter-TSS (NM_009303)	promoter-TSS (NM_009303)	-260	NM_009303	20972	Mm.230301	NM_009303	ENSMUSG00000022415	Syngr1	R75468|Syngr1b|p29	synaptogyrin 1	protein-coding	0.040000	0.447761			-12(AAATACATAACAAAAA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-118	chr12	51997930	51998130	+	-0.76097	NA	3' UTR (NM_029545, exon 3 of 3)	3' UTR (NM_029545, exon 3 of 3)	8477	NM_029545	328092	Mm.2821	NM_029545	ENSMUSG00000020956	Dtd2	4930578F06Rik|6530401N04Rik|ATD|B830049N13Rik	D-tyrosyl-tRNA deacylase 2	protein-coding	0.025000	0.432836			
merged_common-655	chr5	107437839	107438039	+	-0.76097	NA	promoter-TSS (NM_001255991)	promoter-TSS (NM_001255991)	-58	NM_001255991	100503185	Mm.366650	NM_001255991	ENSMUSG00000111375	Btbd8	EG627196|Gm16115	BTB (POZ) domain containing 8	protein-coding	0.115000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-1311	chr19	45783227	45783427	+	-0.76097	NA	non-coding (NR_151594, exon 1 of 15)	non-coding (NR_151594, exon 1 of 15)	226	NM_023799	76055	Mm.122725	NM_023799	ENSMUSG00000025220	Oga	Hy5|Mgea5|Ncoat	O-GlcNAcase	protein-coding	0.120000	0.756219			
Oct4_nocontrol_ChIP_peaks_unique-326	chr2	142911021	142911221	+	-0.76097	NA	Intergenic	L1ME1|LINE|L1	8156	NR_131921	75053	Mm.72638	NR_131921	ENSMUSG00000086504	Kif16bos	4930511F01Rik	kinesin family member 16B, opposite strand	ncRNA	0.010000	0.348259	5(TTTGCATAATGCATT,+,0.00),5(TTTGCATAATGCATT,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-260	chr18	55547450	55547650	+	-0.76097	NA	Intergenic	Intergenic	-554959	NM_001360787	269023	Mm.192984	NM_175751	ENSMUSG00000052713	Zfp608	4932417D18Rik|D430007A19Rik|Znf608	zinc finger protein 608	protein-coding	0.010000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-1637	chr3	95357292	95357492	+	-0.76097	NA	promoter-TSS (NM_001163642)	promoter-TSS (NM_001163642)	-190	NM_018877	84505	Mm.490259	NM_018877	ENSMUSG00000015697	Setdb1	AU022152|ESET|KMT1E|mKIAA0067	SET domain, bifurcated 1	protein-coding	0.015000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-1819	chr4	108579251	108579451	+	-0.76097	NA	promoter-TSS (NM_172697)	promoter-TSS (NM_172697)	-15	NM_172697	230596	Mm.157534	NM_172697	ENSMUSG00000063800	Prpf38a	2410002M20Rik	PRP38 pre-mRNA processing factor 38 (yeast) domain containing A	protein-coding	0.090000	0.592040			
Oct4_nocontrol_ChIP_peaks_unique-383	chr4	53569475	53569675	+	-0.76097	NA	intron (NM_133891, intron 15 of 15)	intron (NM_133891, intron 15 of 15)	-61849	NM_001369182	319636	Mm.103464	NM_176966	ENSMUSG00000054752	Fsd1l	A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl	fibronectin type III and SPRY domain containing 1-like	protein-coding	0.015000	0.398010		13(GATGCATATTCATG,+,0.00),13(GATGCATATTCATG,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-42	chr10	4386930	4387130	+	-0.76097	NA	intron (NM_001033466, intron 1 of 2)	CpG	445	NM_001359811	381990	Mm.262466	NM_001033466	ENSMUSG00000075327	Zbtb2	Gm1103	zinc finger and BTB domain containing 2	protein-coding	0.185000	0.825871			
ePOU_nocontrol_ChIP_peaks_unique-1598	chr3	68375459	68375659	+	-0.76097	NA	intron (NM_001113420, intron 1 of 6)	intron (NM_001113420, intron 1 of 6)	-92624	NM_001282045	30953	Mm.331064	NM_013928	ENSMUSG00000027777	Schip1	Nf2ip|Schip-1	schwannomin interacting protein 1	protein-coding	0.020000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-2595	chr9	107872532	107872732	+	-0.76097	NA	intron (NM_029169, intron 1 of 20)	CpG	187	NM_029169	19654	Mm.139926	NM_011251	ENSMUSG00000032582	Rbm6	4930506F14Rik|Def-3|NY-LU-12|g16|mKIAA4015	RNA binding motif protein 6	protein-coding	0.110000	0.706468			
Oct4_nocontrol_ChIP_peaks_unique-540	chr9	86782912	86783112	+	-0.76097	NA	intron (NM_013669, intron 23 of 29)	intron (NM_013669, intron 23 of 29)	39379	NM_178738	244954	Mm.257629	NM_178738	ENSMUSG00000033491	Prss35	6030424L22Rik|P3D9	protease, serine 35	protein-coding	0.010000	0.462687			10(CTTTACATGACTAAAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1331	chr2	7778700	7778900	+	-0.76097	NA	Intergenic	Intergenic	-382602	NM_001110231	14007	Mm.398543	NM_010160	ENSMUSG00000002107	Celf2	B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3	CUGBP, Elav-like family member 2	protein-coding	0.005000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-1382	chr2	57195916	57196116	+	-0.76097	NA	Intergenic	Intergenic	14185	NR_040633	75279	Mm.401987	NR_040633	ENSMUSG00000086396	4930555B11Rik	-	RIKEN cDNA 4930555B11 gene	ncRNA	0.015000	0.398010			
merged_common-267	chr14	67708505	67708705	+	-0.76097	NA	intron (NM_001110162, intron 4 of 14)	intron (NM_001110162, intron 4 of 14)	7005	NM_001110162	108912	Mm.33831	NM_175384	ENSMUSG00000048922	Cdca2	2610311M19Rik|AI586158	cell division cycle associated 2	protein-coding	0.005000	0.363184			-40(ATTTATAAGACAAATT,-,0.00),79(ATCTACATGACAAACG,-,0.00)
merged_common-77	chr1	191661989	191662189	+	-0.76097	NA	Intergenic	Charlie20a|DNA|hAT-Charlie	-55935	NM_172266	226856	Mm.277958	NM_172266	ENSMUSG00000026623	Lpgat1	AI649174|AW112037|BC013667	lysophosphatidylglycerol acyltransferase 1	protein-coding	0.005000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-218	chr10	29277968	29278168	+	-0.76097	NA	Intergenic	Intergenic	-35098	NM_001110195	52665	Mm.28930	NM_025855	ENSMUSG00000019883	Echdc1	1700028A24Rik|AI314462|AI930038|D10Ertd667e|MMCD	enoyl Coenzyme A hydratase domain containing 1	protein-coding	0.010000	0.462687			
merged_common-601	chr4	93018764	93018964	+	-0.76097	NA	Intergenic	Intergenic	316647	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.005000	0.293532			
Oct4_nocontrol_ChIP_peaks_unique-90	chr11	84831288	84831488	+	-0.76097	NA	TTS (NM_153144)	TTS (NM_153144)	2210	NR_046281	74995	Mm.84413	NR_046281	ENSMUSG00000086799	4930502E09Rik	-	RIKEN cDNA 4930502E09 gene	ncRNA	0.010000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-1747	chr4	43492918	43493118	+	-0.76097	NA	promoter-TSS (NR_001460)	promoter-TSS (NR_001460)	41	NR_001460	19782		NR_001460	ENSMUSG00000088088	Rmrp	1110032O22Rik|Rmrpr	RNA component of mitochondrial RNAase P	ncRNA	0.065000	0.532338			
ePOU_nocontrol_ChIP_peaks_unique-1131	chr17	72837072	72837272	+	-0.76097	NA	promoter-TSS (NM_001357368)	promoter-TSS (NM_001357368)	-364	NM_001357368	383295	Mm.277533	NM_027166	ENSMUSG00000039770	Ypel5	2310076K21Rik|CGI-127	yippee like 5	protein-coding	0.160000	0.810945			
Oct4_nocontrol_ChIP_peaks_unique-391	chr4	99118368	99118568	+	-0.76097	NA	intron (NM_001369285, intron 1 of 48)	intron (NM_001369285, intron 1 of 48)	2447	NM_026082	67299	Mm.260623	NM_026082	ENSMUSG00000028556	Dock7	3110056M06Rik|Gm430	dedicator of cytokinesis 7	protein-coding	0.000000	0.323383			53(ATATACATTACAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1134	chr17	74489751	74489951	+	-0.76097	NA	intron (NM_026417, intron 1 of 5)	CpG	358	NM_026417	67864	Mm.41891	NM_026417	ENSMUSG00000024072	Yipf4	2310034L04Rik	Yip1 domain family, member 4	protein-coding	0.090000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-2106	chr6	76545066	76545266	+	-0.76097	NA	Intergenic	Intergenic	-697311	NM_001362109	74342	Mm.292568	NM_028880	ENSMUSG00000060780	Lrrtm1	4632401D06Rik|AW125451	leucine rich repeat transmembrane neuronal 1	protein-coding	0.010000	0.348259			
merged_common-346	chr17	3752087	3752287	+	-0.76097	NA	Intergenic	MTEa|LTR|ERVL-MaLR	-55926	NM_198958	224480	Mm.328756	NM_198958	ENSMUSG00000023802	Nox3	GP91-3|het|nmf250	NADPH oxidase 3	protein-coding	0.000000	0.482587			-76(GCATTCTCATTGTTAT,+,0.00),-70(TCATTGTTATGATAAA,+,0.00)
merged_common-41	chr1	125435638	125435838	+	-0.76097	NA	promoter-TSS (NM_001205386)	promoter-TSS (NM_001205386)	-11	NM_001205385	74117	Mm.183102	NM_023735	ENSMUSG00000026341	Actr3	1200003A09Rik|Arp3	ARP3 actin-related protein 3	protein-coding	0.130000	0.726368			
merged_common-694	chr6	42553507	42553707	+	-0.76097	NA	Intergenic	Intergenic	-14587	NM_001081301	546896	Mm.439626	NM_001081301	ENSMUSG00000071494	Olfr455	EG546896|MOR0-17_p|MOR0-2P|MORO-2|Olfr455-ps1	olfactory receptor 455	protein-coding	0.000000	0.293532			-73(ATGTACATGAAAGAAA,-,0.00),78(ATCTGCATAAATAATG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1866	chr4	148804194	148804394	+	-0.76097	NA	promoter-TSS (NM_001159344)	promoter-TSS (NM_001159344)	-98	NM_027195	69743	Mm.233879	NM_027195	ENSMUSG00000028977	Casz1	2410019P08Rik|AV096627|BC040081|Cst|D4Ertd432e	castor zinc finger 1	protein-coding	0.115000	0.691542			
merged_common-817	chr9	14619515	14619715	+	-0.76097	NA	Intergenic	Intergenic	-4615	NM_001081395	75723	Mm.159552	NM_001081395	ENSMUSG00000013076	Amotl1	2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155	angiomotin-like 1	protein-coding	0.000000	0.378109		-10(CATTCATATGCAAA,+,0.00)	-11(CCATTCATATGCAAAT,+,0.00)
merged_common-359	chr17	29614831	29615031	+	-0.76097	NA	non-coding (NR_132314, exon 1 of 28)	non-coding (NR_132314, exon 1 of 28)	142	NM_021419	58230	Mm.305994	NM_021419	ENSMUSG00000090083	Rnf8	3830404E21Rik|AIP37|laXp180	ring finger protein 8	protein-coding	0.105000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique	chr1	4857724	4857924	+	-0.76097	NA	promoter-TSS (NM_001159751)	promoter-TSS (NM_001159751)	130	NM_011541	21399	Mm.207263	NM_011541	ENSMUSG00000033813	Tcea1	S-II	transcription elongation factor A (SII) 1	protein-coding	0.125000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-2250	chr7	84689814	84690014	+	-0.76097	NA	promoter-TSS (NM_001360582)	promoter-TSS (NM_001360582)	43	NM_001360578	65098	Mm.209349	NM_022985	ENSMUSG00000030629	Zfand6	3110005P07Rik|Awp1|Za20d3	zinc finger, AN1-type domain 6	protein-coding	0.135000	0.711443			
Oct4_nocontrol_ChIP_peaks_unique-546	chr9	100693477	100693677	+	-0.76097	NA	intron (NM_001357264, intron 1 of 32)	B3A|SINE|B2	50129	NM_001357265	20842	Mm.42135	NM_009282	ENSMUSG00000037286	Stag1	AU045003|SA-1|Scc3	stromal antigen 1	protein-coding	0.015000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-1536	chr3	12593857	12594057	+	-0.76097	NA	Intergenic	Intergenic	-749598	NR_040751	100038545	Mm.388494	NR_040751	ENSMUSG00000104015	Gm10745	-	predicted gene 10745	ncRNA	0.005000	0.283582			
Oct4_nocontrol_ChIP_peaks_unique-434	chr6	35816303	35816503	+	-0.76097	NA	Intergenic	Intergenic	-276515	NM_008098	14489	Mm.182746	NM_008098	ENSMUSG00000029840	Mtpn	5033418D15Rik|Gcdp|V1	myotrophin	protein-coding	0.015000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-1394	chr2	71022133	71022333	+	-0.76097	NA	intron (NM_001110512, intron 1 of 9)	intron (NM_001110512, intron 1 of 9)	33373	NM_001110512	228019	Mm.490343	NM_145524	ENSMUSG00000041975	Mettl8	BC004636|Tip	methyltransferase like 8	protein-coding	0.020000	0.407960		-55(AATGAATTTGTATG,-,0.00)	-50(ATTTGTATGAAAAAAG,-,0.00),70(ATCTACAAGGGAAAGC,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-406	chr4	147519010	147519210	+	-0.76097	NA	Intergenic	RLTR51B_Mm|LTR|ERVK?	11512	NM_001039209	195531	Mm.270762	NM_001039209	ENSMUSG00000078496	Zfp982	Gm13152	zinc finger protein 982	protein-coding	0.005000	0.457711			
Oct4_nocontrol_ChIP_peaks_unique-296	chr2	20925657	20925857	+	-0.76097	NA	intron (NM_001128084, intron 1 of 24)	ORR1D2|LTR|ERVL-MaLR	41964	NM_001128084	71435	Mm.28507	NM_001081364	ENSMUSG00000036591	Arhgap21	5530401C11Rik|AA416458|ARHGAP10	Rho GTPase activating protein 21	protein-coding	0.010000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-2017	chr5	144768547	144768747	+	-0.76097	NA	promoter-TSS (NM_001081362)	promoter-TSS (NM_001081362)	-147	NM_001081362	100683	Mm.273570	NM_001081362	ENSMUSG00000045482	Trrap	AI481500	transformation/transcription domain-associated protein	protein-coding	0.090000	0.671642			
ePOU_nocontrol_ChIP_peaks_unique-2621	chrUn_JH584304	44713	44913	+	-0.76097	NA	Intergenic	Intergenic	14876	NR_003518	66776	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.020000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-9	chr1	21218567	21218767	+	-0.76097	NA	promoter-TSS (NM_029398)	promoter-TSS (NM_029398)	92	NM_029398	75712	Mm.304763	NM_029398	ENSMUSG00000025933	Tmem14a	5730496E24Rik|C85783|PTD011	transmembrane protein 14A	protein-coding	0.040000	0.636816			
Oct4_nocontrol_ChIP_peaks_unique-435	chr6	45662931	45663131	+	-0.76097	NA	intron (NM_001004357, intron 2 of 23)	intron (NM_001004357, intron 2 of 23)	602970	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.010000	0.293532			-11(CCATTTTTATACAAAT,+,0.00),76(ATTAAAAATACAATGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-824	chr14	113915065	113915265	+	-0.76097	NA	Intergenic	Intergenic	-916800	NR_045661	75822	Mm.410813	NR_045661	ENSMUSG00000115320	4930524C18Rik	-	RIKEN cDNA 4930524C18 gene	ncRNA	0.005000	0.318408			70(ATATTCTCATGGAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-499	chr11	120932840	120933040	+	-0.76097	NA	promoter-TSS (NM_027745)	promoter-TSS (NM_027745)	-68	NM_027745	71276	Mm.275751	NM_027745	ENSMUSG00000048445	Ccdc57	4933434G05Rik	coiled-coil domain containing 57	protein-coding	0.080000	0.616915			
merged_common-304	chr15	77355451	77355651	+	-0.76097	NA	Intergenic	Intergenic	43559	NM_029419	75761	Mm.232636	NM_029419	ENSMUSG00000010601	Apol7a	9130022K13Rik|Apol3	apolipoprotein L 7a	protein-coding	0.010000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-540	chr12	45343138	45343338	+	-0.76097	NA	Intergenic	Intergenic	-268755	NM_144552	217517	Mm.285400	NM_144552	ENSMUSG00000046314	Stxbp6	BC024598|C85317	syntaxin binding protein 6 (amisyn)	protein-coding	0.005000	0.353234		74(TATGAATATGAATA,+,0.00),74(TATGAATATGAATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-669	chr13	51651751	51651951	+	-0.76097	NA	intron (NM_001308448, intron 1 of 16)	CpG	143	NM_029279	75420	Mm.275981	NM_029279	ENSMUSG00000035139	Secisbp2	2210413N07Rik|2810012K13Rik|SBP2	SECIS binding protein 2	protein-coding	0.130000	0.711443			
Oct4_nocontrol_ChIP_peaks_unique-120	chr12	75669320	75669520	+	-0.76097	NA	intron (NM_028203, intron 1 of 1)	CpG	117	NM_028203	72338	Mm.341719	NM_028203	ENSMUSG00000045690	Wdr89	2600001A11Rik	WD repeat domain 89	protein-coding	0.085000	0.686567			
ePOU_nocontrol_ChIP_peaks_unique-1105	chr17	46555961	46556161	+	-0.76097	NA	5' UTR (NM_020493, exon 1 of 7)	5' UTR (NM_020493, exon 1 of 7)	101	NM_020493	20807	Mm.45044	NM_020493	ENSMUSG00000015605	Srf	AW049942|AW240594	serum response factor	protein-coding	0.130000	0.820896			
ePOU_nocontrol_ChIP_peaks_unique-2534	chr9	60460387	60460587	+	-0.76097	NA	intron (NM_001040426, intron 3 of 17)	intron (NM_001040426, intron 3 of 17)	50548	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.025000	0.457711			71(CTTTGCATGAGAAACC,-,0.00)
merged_common-575	chr4	28152375	28152575	+	-0.76097	NA	Intergenic	AT_rich|Low_complexity|Low_complexity	-660656	NM_001290434	13841	Mm.257266	NM_010141	ENSMUSG00000028289	Epha7	Cek11|Ebk|Ehk3|Hek11|Mdk1	Eph receptor A7	protein-coding	0.000000	0.179104		21(TTTGCATATTCATA,+,0.00),21(TTTGCATATTCATA,-,0.00)	-34(ATTTTTAAAACAAAGA,-,0.00)
merged_common-390	chr18	14349395	14349595	+	-0.76097	NA	Intergenic	Intergenic	117189	NR_045373	74529	Mm.400519	NR_045373	ENSMUSG00000117633	8430422H06Rik	-	RIKEN cDNA 8430422H06 gene	ncRNA	0.000000	0.422886			
merged_common-64	chr1	169569774	169569974	+	-0.76097	NA	Intergenic	Intergenic	-38410	NM_023284	66977	Mm.151315	NM_023284	ENSMUSG00000026683	Nuf2	2410003C07Rik|AU044112|C85691|Cdca1|NUF2R	NUF2, NDC80 kinetochore complex component	protein-coding	0.010000	0.258706			2(ATATACATGTGAATGT,-,0.00),49(ATTTCAATGAAAACAA,-,0.00)
merged_common-603	chr4	95249972	95250172	+	-0.76097	NA	Intergenic	Intergenic	-197850	NM_010591	16476	Mm.275071	NM_010591	ENSMUSG00000052684	Jun	AP-1|Junc|c-jun	jun proto-oncogene	protein-coding	0.005000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-1008	chr16	46489429	46489629	+	-0.76097	NA	intron (NM_021495, intron 1 of 5)	intron (NM_021495, intron 1 of 5)	7438	NM_021496	58998	Mm.40477	NM_021495	ENSMUSG00000022656	Nectin3	2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3	nectin cell adhesion molecule 3	protein-coding	0.005000	0.348259			
Oct4_nocontrol_ChIP_peaks_unique-23	chr1	128077180	128077380	+	-0.76097	NA	intron (NM_001285945, intron 2 of 20)	intron (NM_001285945, intron 2 of 20)	25191	NM_027678	226409	Mm.425048	NM_027678	ENSMUSG00000036086	Zranb3	4933425L19Rik|AH2|AI316834|C730006D09	zinc finger, RAN-binding domain containing 3	protein-coding	0.020000	0.393035		-52(TATGAATATTCAAA,+,0.00),-52(TATGAATATTCAAA,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-361	chr3	101162866	101163066	+	-0.76097	NA	Intergenic	Intergenic	-52800	NM_011197	19221	Mm.24807	NM_011197	ENSMUSG00000027864	Ptgfrn	4833445A08Rik|AU042434|CD9P-1|EWI-F|FPRP|Trim45	prostaglandin F2 receptor negative regulator	protein-coding	0.025000	0.457711		14(CATGCATATGCATG,+,0.00),14(CATGCATATGCATG,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-175	chr14	45903162	45903362	+	-0.76097	NA	Intergenic	(TATATG)n|Simple_repeat|Simple_repeat	-180765	NR_002875	218963	Mm.282093	NR_002875		Gm1821	-	ubiquitin pseudogene	pseudo	0.000000	0.388060		41(TTTGCATATACATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-837	chr15	3995755	3995955	+	-0.76097	NA	promoter-TSS (NR_045740)	promoter-TSS (NR_045740)	-109	NM_145930	106064	Mm.21299	NM_145930	ENSMUSG00000041935	AW549877	AI195826	expressed sequence AW549877	protein-coding	0.080000	0.681592			
Oct4_nocontrol_ChIP_peaks_unique-502	chr8	33653542	33653742	+	-0.76097	NA	exon (NM_010344, exon 1 of 13)	exon (NM_010344, exon 1 of 13)	404	NM_010344	14782	Mm.283573	NM_010344	ENSMUSG00000031584	Gsr	AI325518|D8Ertd238e|Gr-1|Gr1	glutathione reductase	protein-coding	0.170000	0.820896			
ePOU_nocontrol_ChIP_peaks_unique-348	chr11	9011154	9011354	+	-0.76097	NA	promoter-TSS (NM_001303610)	promoter-TSS (NM_001303610)	-63	NR_130178	15574	Mm.42201	NM_008316	ENSMUSG00000020413	Hus1	-	HUS1 checkpoint clamp component	protein-coding	0.095000	0.661692			
merged_common-99	chr10	45121823	45122023	+	-0.76097	NA	intron (NM_011156, intron 9 of 14)	intron (NM_011156, intron 9 of 14)	54707	NM_011156	19072	Mm.37294	NM_011156	ENSMUSG00000019849	Prep	AI047692|AI450383|D10Wsu136e|PE|PEP|Pop	prolyl endopeptidase	protein-coding	0.015000	0.467662			-44(TCATTGTTATGCAAAC,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2296	chr7	119895932	119896132	+	-0.76097	NA	promoter-TSS (NM_029610)	promoter-TSS (NM_029610)	171	NM_001285961	73919	Mm.46381	NM_029610	ENSMUSG00000030922	Lyrm1	1110065L10Rik|2310004B22Rik|4930404J24Rik	LYR motif containing 1	protein-coding	0.045000	0.577114			
Oct4_nocontrol_ChIP_peaks_unique-523	chr8	119394929	119395129	+	-0.76097	NA	exon (NM_019966, exon 1 of 5)	exon (NM_019966, exon 1 of 5)	135	NM_001364328	56690	Mm.423037	NM_019966	ENSMUSG00000074064	Mlycd	AI324784|Mcd	malonyl-CoA decarboxylase	protein-coding	0.160000	0.786070			
ePOU_nocontrol_ChIP_peaks_unique-1043	chr17	5053155	5053355	+	-0.76097	NA	intron (NM_001085355, intron 2 of 19)	intron (NM_001085355, intron 2 of 19)	58181	NM_001085355	239985	Mm.133401	NM_001085355	ENSMUSG00000069729	Arid1b	8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235	AT rich interactive domain 1B (SWI-like)	protein-coding	0.035000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-134	chr1	157412521	157412721	+	-0.76097	NA	promoter-TSS (NM_177644)	promoter-TSS (NM_177644)	-26	NM_177644	226525	Mm.235028	NM_177644	ENSMUSG00000070565	Rasal2	6530401P13|A330066M24Rik	RAS protein activator like 2	protein-coding	0.120000	0.676617			
Oct4_nocontrol_ChIP_peaks_unique-138	chr13	29629335	29629535	+	-0.76097	NA	intron (NR_131896, intron 8 of 16)	intron (NR_131896, intron 8 of 16)	226238	NM_001308486	68916	Mm.212227	NM_144536	ENSMUSG00000006191	Cdkal1	1190005B03Rik|6620401C13Rik	CDK5 regulatory subunit associated protein 1-like 1	protein-coding	0.005000	0.338308			
merged_common-409	chr18	53083955	53084155	+	-0.76097	NA	Intergenic	Intergenic	-92237	NM_026386	67804	Mm.252171	NM_026386	ENSMUSG00000034484	Snx2	0610030A03Rik	sorting nexin 2	protein-coding	0.010000	0.363184			-36(GTATTCTTATGTTGAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-194	chr14	118977391	118977591	+	-0.76097	NA	intron (NM_008929, intron 11 of 11)	intron (NM_008929, intron 11 of 11)	39559	NM_008929	100037258	Mm.12616	NM_008929	ENSMUSG00000022136	Dnajc3	AA408985|AU067833|Dnajc3a|Dnajc3b|Prkri|mp58|p58|p58IPK	DnaJ heat shock protein family (Hsp40) member C3	protein-coding	0.000000	0.388060			
Oct4_nocontrol_ChIP_peaks_unique-192	chr14	110296441	110296641	+	-0.79682	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	458608	NM_175499	239250	Mm.49728	NM_175499	ENSMUSG00000045871	Slitrk6	4832410J21Rik|Sltk6	SLIT and NTRK-like family, member 6	protein-coding	0.000000	0.233831		-25(TATGCATATGCATA,+,0.00),-25(TATGCATATGCATA,-,0.00),-3(CATGCATATGCATA,+,0.00),-3(CATGCATATGCATA,-,0.00),19(CATGCATATGCATA,+,0.00),19(CATGCATATGCATA,-,0.00),41(TATGCATATATATA,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-517	chr8	94612267	94612467	+	-0.79682	NA	intron (NM_026274, intron 1 of 14)	intron (NM_026274, intron 1 of 14)	10426	NM_001359093	67610	Mm.109074	NM_026274	ENSMUSG00000050079	Rspry1	4930470D19Rik|AI608258	ring finger and SPRY domain containing 1	protein-coding	0.000000	0.338308		41(TTTGCATATGCATG,+,0.00),41(TTTGCATATGCATG,-,0.00)	-44(TCTTTCCTATGGAAAT,+,0.00)
merged_common-377	chr17	74360696	74360896	+	-0.79682	NA	intron (NM_016962, intron 4 of 16)	intron (NM_016962, intron 4 of 16)	21809	NM_001162870	50850	Mm.19804	NM_016962	ENSMUSG00000024068	Spast	Spg4|mKIAA1083	spastin	protein-coding	0.000000	0.293532			
Oct4_nocontrol_ChIP_peaks_unique-555	chrX	38700505	38700705	+	-0.79682	NA	Intergenic	Intergenic	-65462	NM_021550	59048	Mm.441410	NM_021550	ENSMUSG00000048970	C1galt1c1	1500002I11Rik|AB030184|C1GalT2|C81205|Cosmc	C1GALT1-specific chaperone 1	protein-coding	0.005000	0.388060		-17(TCTGAATATGCAAG,-,0.00)	
merged_common-597	chr4	87883313	87883513	+	-0.79682	NA	intron (NM_027326, intron 2 of 10)	intron (NM_027326, intron 2 of 10)	-77090	NM_001286158	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.010000	0.497512		-29(CATGAATATTCAAA,+,0.00),-29(CATGAATATTCAAA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2517	chr9	49606459	49606659	+	-0.79682	NA	intron (NM_001081445, intron 1 of 17)	intron (NM_001081445, intron 1 of 17)	88271	NR_029465	100036537	Mm.437541	NR_029465	ENSMUSG00000079564	Gm11149	-	predicted gene 11149	ncRNA	0.015000	0.517413	-3(CTTGAATTATTCATG,+,0.00),-3(CTTGAATTATTCATG,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1354	chr2	28640947	28641147	+	-0.79682	NA	promoter-TSS (NM_022887)	promoter-TSS (NM_022887)	-186	NM_022887	64930	Mm.224354	NM_022887	ENSMUSG00000026812	Tsc1	-	TSC complex subunit 1	protein-coding	0.055000	0.542289			
Oct4_nocontrol_ChIP_peaks_unique-271	chr19	6159769	6159969	+	-0.79682	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-4570	NM_028967	74481	Mm.159219	NM_028967	ENSMUSG00000039699	Batf2	B-ATF-2	basic leucine zipper transcription factor, ATF-like 2	protein-coding	0.000000	0.328358			
Oct4_nocontrol_ChIP_peaks_unique-181	chr14	67932197	67932397	+	-0.79682	NA	intron (NM_177780, intron 1 of 51)	intron (NM_177780, intron 1 of 51)	1275	NM_177780	68813	Mm.258155	NM_177780	ENSMUSG00000044447	Dock5	1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc	dedicator of cytokinesis 5	protein-coding	0.015000	0.353234		-71(TATGCATATATATA,-,0.00)	-95(ATTAAAAAAAAAAAGG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-459	chr6	143524271	143524471	+	-0.79682	NA	Intergenic	Intergenic	11137	NR_155418	75904	Mm.414916	NR_155418	ENSMUSG00000084971	4930579D09Rik	-	RIKEN cDNA 4930579D09 gene	ncRNA	0.030000	0.437811			38(GTGTTCTCATGCATAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-246	chr10	62578928	62579128	+	-0.79682	NA	promoter-TSS (NM_028197)	promoter-TSS (NM_028197)	-571	NM_028197	72320	Mm.258955	NM_028197	ENSMUSG00000036955	Kif1bp	0710007C18Rik|2510003E04Rik|KBP|mKIAA1279	KIF1 binding protein	protein-coding	0.005000	0.378109			-6(GTATTGTAATGCTAAA,+,0.00)
merged_common-447	chr2	4420790	4420990	+	-0.79682	NA	intron (NM_001177843, intron 1 of 23)	intron (NM_001177843, intron 1 of 23)	19914	NM_001177843	209630	Mm.37932	NM_172475	ENSMUSG00000026657	Frmd4a	2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294	FERM domain containing 4A	protein-coding	0.010000	0.507463			-68(GCTTTGTCATGCTAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-362	chr3	108811584	108811784	+	-0.82938	NA	intron (NM_011504, intron 8 of 18)	intron (NM_011504, intron 8 of 18)	28818	NM_011504	20912	Mm.316894	NM_011504	ENSMUSG00000027882	Stxbp3	Munc-18c|Stxbp3a|Sxtbp3|Unc18-3	syntaxin binding protein 3	protein-coding	0.000000	0.383085			33(CTGTGCATGACTAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-543	chr12	49887292	49887492	+	-0.82938	NA	Intergenic	Eulor10|DNA?|DNA?	-406530	NR_045472	69054	Mm.417838	NR_045472	ENSMUSG00000100844	1810007C17Rik	-	RIKEN cDNA 1810007C17 gene	ncRNA	0.010000	0.388060			
Oct4_nocontrol_ChIP_peaks_unique-436	chr6	47454056	47454256	+	-0.82938	NA	promoter-TSS (NM_001355550)	promoter-TSS (NM_001355550)	-163	NM_012042	26965	Mm.87611	NM_012042	ENSMUSG00000029686	Cul1	Cul-1	cullin 1	protein-coding	0.145000	0.786070			
ePOU_nocontrol_ChIP_peaks_unique-298	chr10	99046658	99046858	+	-0.82938	NA	Intergenic	Intergenic	-60324	NR_153333	382406	Mm.440656	NM_027740	ENSMUSG00000019952	Poc1b	4933430F16Rik|Wdr51b	POC1 centriolar protein B	protein-coding	0.015000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-148	chr1	168381688	168381888	+	-0.82938	NA	intron (NM_001291508, intron 2 of 7)	intron (NM_001291508, intron 2 of 7)	50381	NM_183355	18514	Mm.43358	NM_008783	ENSMUSG00000052534	Pbx1	2310056B04Rik|D230003C07Rik|Pbx-1	pre B cell leukemia homeobox 1	protein-coding	0.010000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-193	chr10	10319997	10320197	+	-0.82938	NA	Intergenic	Intergenic	152302	NM_001127353	215772	Mm.246573	NM_172547	ENSMUSG00000050994	Adgb	9130014G24Rik	androglobin	protein-coding	0.005000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-2459	chr8	114727125	114727325	+	-0.82938	NA	intron (NM_019573, intron 8 of 8)	intron (NM_019573, intron 8 of 8)	287573	NM_019573	80707	Mm.440420	NM_019573	ENSMUSG00000004637	Wwox	5330426P09Rik|9030416C10Rik|WOX1	WW domain-containing oxidoreductase	protein-coding	0.005000	0.378109		-22(CATGCATAAGAATA,+,0.00),-12(AATACATATGTATA,+,0.00),-12(AATACATATGTATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1244	chr18	82549675	82549875	+	-0.82938	NA	intron (NM_001025245, intron 3 of 3)	intron (NM_001025245, intron 3 of 3)	-4688	NM_001025258	17196	Mm.252063	NM_010777	ENSMUSG00000041607	Mbp	C76307|Hmbpr|R75289|golli-mbp|jve|mld|shi	myelin basic protein	protein-coding	0.030000	0.442786			-45(CTTGTGTTTTGTTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2367	chr8	41088772	41088972	+	-0.82938	NA	intron (NM_001005863, intron 1 of 13)	intron (NM_001005863, intron 1 of 13)	25795	NM_001286413	102103	Mm.149438	NM_001005863	ENSMUSG00000045636	Mtus1	AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288	mitochondrial tumor suppressor 1	protein-coding	0.005000	0.373134			-95(TGTTTCTTATGCTAAT,+,0.00),40(ATTAGCATGATTATAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-33	chr1	54791729	54791929	+	-0.82938	NA	intron (NM_001081433, intron 3 of 27)	intron (NM_001081433, intron 3 of 27)	134558	NM_001081433	329154	Mm.397910	NM_001081433	ENSMUSG00000052331	Ankrd44	4930444A19Rik|A130096K20|E130014H08Rik|PP6-ARS-B	ankyrin repeat domain 44	protein-coding	0.000000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-1954	chr5	91962741	91962941	+	-0.82938	NA	promoter-TSS (NR_073442)	promoter-TSS (NR_073442)	-41	NR_028429	381650	Mm.159453	NR_028429	ENSMUSG00000102644	Thap6	4930534K21Rik|AI448650	THAP domain containing 6	pseudo	0.055000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-446	chr11	86484351	86484551	+	-0.82938	NA	promoter-TSS (NM_029788)	promoter-TSS (NM_029788)	-206	NM_029788	76892	Mm.262707	NM_029788	ENSMUSG00000020521	Rnft1	0610013E23Rik|AV007605	ring finger protein, transmembrane 1	protein-coding	0.065000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-1221	chr18	66046368	66046568	+	-0.82938	NA	Intergenic	Intergenic	-43833	NM_027400	70361	Mm.290857	NM_027400	ENSMUSG00000041891	Lman1	2610020P13Rik|AI326273|AU043785|C730041J05|ERGIC53|F5F8D|MCFD1|MR60|P58|gp58	lectin, mannose-binding, 1	protein-coding	0.010000	0.308458		-36(AATGAATATTTATT,+,0.00),-36(AATGAATATTTATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1828	chr4	117202378	117202578	+	-0.82938	NA	Intergenic	Intergenic	-19854	NM_134471	73804	Mm.247651	NM_134471	ENSMUSG00000028678	Kif2c	4930402F02Rik|ESTM5|Knsl6|MCAK|X83316	kinesin family member 2C	protein-coding	0.045000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-875	chr15	55416097	55416297	+	-0.82938	NA	intron (NM_001368422, intron 19 of 47)	intron (NM_001368422, intron 19 of 47)	108446	NM_001368422	12818	Mm.297859	NM_181277	ENSMUSG00000022371	Col14a1	5730412L22Rik|AW108078	collagen, type XIV, alpha 1	protein-coding	0.000000	0.323383			
Oct4_nocontrol_ChIP_peaks_unique-453	chr6	121110109	121110309	+	-0.82938	NA	intron (NM_001270475, intron 1 of 31)	intron (NM_001270475, intron 1 of 31)	20813	NM_001270475	194401	Mm.122399	NM_153396	ENSMUSG00000051586	Mical3	C130040D16Rik|Mical-3|mKIAA1364	microtubule associated monooxygenase, calponin and LIM domain containing 3	protein-coding	0.095000	0.736318			
merged_common-519	chr3	9654728	9654928	+	-0.82938	NA	Intergenic	Intergenic	-44743	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.000000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-2188	chr7	25267817	25268017	+	-0.82938	NA	intron (NM_001302811, intron 1 of 20)	intron (NM_001302811, intron 1 of 20)	218	NM_001302811	71722	Mm.28833	NM_027882	ENSMUSG00000005442	Cic	1200010B10Rik|mKIAA0306	capicua transcriptional repressor	protein-coding	0.045000	0.517413			
merged_common-245	chr13	102906288	102906488	+	-0.82938	NA	intron (NM_175171, intron 4 of 28)	intron (NM_175171, intron 4 of 28)	146133	NR_130318	76624	Mm.426384	NR_130171	ENSMUSG00000091906	1700099I09Rik	-	RIKEN cDNA 1700099I09 gene	ncRNA	0.010000	0.542289			
ePOU_nocontrol_ChIP_peaks_unique-2556	chr9	72889807	72890007	+	-0.82938	NA	intron (NM_175485, intron 11 of 19)	intron (NM_175485, intron 11 of 19)	-35738	NM_028116	72135	Mm.273605	NM_028116	ENSMUSG00000034910	Pygo1	2600014C22Rik	pygopus 1	protein-coding	0.000000	0.358209			-46(CTATGAATGAGAATGT,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-144	chr13	38658602	38658802	+	-0.82938	NA	intron (NM_025380, intron 1 of 3)	CpG	326	NM_025380	66143	Mm.490319	NM_025380	ENSMUSG00000001707	Eef1e1	1110003A02Rik	eukaryotic translation elongation factor 1 epsilon 1	protein-coding	0.090000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-421	chr11	68006315	68006515	+	-0.82938	NA	intron (NM_018768, intron 4 of 7)	intron (NM_018768, intron 4 of 7)	39957	NM_001361350	55943	Mm.3973	NM_018768	ENSMUSG00000020903	Stx8	0610007H08Rik|1110002H11Rik|4930571E13Rik|CARB	syntaxin 8	protein-coding	0.025000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-694	chr13	81494645	81494845	+	-0.82938	NA	intron (NM_054053, intron 44 of 89)	intron (NM_054053, intron 44 of 89)	138399	NM_054053	110789	Mm.288694	NM_054053	ENSMUSG00000069170	Adgrv1	Frings|Gpr98|Mass1|Mgr1|VLGR1	adhesion G protein-coupled receptor V1	protein-coding	0.000000	0.328358			6(ATTTAAAATACAAAAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2016	chr5	144014882	144015082	+	-0.82938	NA	promoter-TSS (NM_177682)	promoter-TSS (NM_177682)	-129	NM_177682	231874	Mm.320432	NM_177682	ENSMUSG00000029617	Ccz1	AU022870	CCZ1 vacuolar protein trafficking and biogenesis associated	protein-coding	0.050000	0.522388			
Oct4_nocontrol_ChIP_peaks_unique-129	chr12	102468973	102469173	+	-0.82938	NA	promoter-TSS (NM_013747)	promoter-TSS (NM_013747)	-61	NM_001199004	27277	Mm.273370	NM_013747	ENSMUSG00000021192	Golga5	Ret-II	golgi autoantigen, golgin subfamily a, 5	protein-coding	0.145000	0.771144			
ePOU_nocontrol_ChIP_peaks_unique-608	chr12	102757916	102758116	+	-0.82938	NA	promoter-TSS (NM_001142939)	promoter-TSS (NM_001142939)	41	NM_025666	66622	Mm.34261	NM_025666	ENSMUSG00000041712	Ubr7	5730410I19Rik|AA589405|AW557761	ubiquitin protein ligase E3 component n-recognin 7 (putative)	protein-coding	0.110000	0.726368			
Oct4_nocontrol_ChIP_peaks_unique-442	chr6	87850596	87850796	+	-0.82938	NA	intron (NM_001355195, intron 1 of 4)	CpG	410	NM_013493	12785	Mm.290251	NM_013493	ENSMUSG00000030057	Cnbp	AA408710|Cnbp1|Znf9	cellular nucleic acid binding protein	protein-coding	0.130000	0.761194			
Oct4_nocontrol_ChIP_peaks_unique-266	chr18	67390832	67391032	+	-0.82938	NA	intron (NM_026473, intron 1 of 3)	CpG	201	NM_026473	67951	Mm.181860	NM_026473	ENSMUSG00000001473	Tubb6	2310057H16Rik|BB220206	tubulin, beta 6 class V	protein-coding	0.090000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-406	chr11	61578095	61578295	+	-0.82938	NA	intron (NM_001362587, intron 1 of 11)	intron (NM_001362587, intron 1 of 11)	1492	NM_010148	13855	Mm.139695	NM_010148	ENSMUSG00000001036	Epn2	9530051D10Rik|AA536924|Ibp2	epsin 2	protein-coding	0.005000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-153	chr1	171222586	171222786	+	-0.82938	NA	promoter-TSS (NM_001037170)	promoter-TSS (NM_001037170)	-172	NM_001037170	641376	Mm.288374	NM_001037170	ENSMUSG00000005674	Tomm40l	-	translocase of outer mitochondrial membrane 40-like	protein-coding	0.025000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-151	chr1	169969413	169969613	+	-0.82938	NA	promoter-TSS (NM_010476)	promoter-TSS (NM_010476)	104	NR_040438	67303	Mm.396611	NR_040438	ENSMUSG00000097503	3110045C21Rik	AI838577	RIKEN cDNA 3110045C21 gene	ncRNA	0.025000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-436	chr11	78550744	78550944	+	-0.82938	NA	promoter-TSS (NM_133706)	promoter-TSS (NM_133706)	-109	NM_133706	69071	Mm.29431	NM_133706	ENSMUSG00000037278	Tmem97	1810014L12Rik|AI115531|AL022956|D11Bhm182e	transmembrane protein 97	protein-coding	0.090000	0.636816			
ePOU_nocontrol_ChIP_peaks_unique-2470	chr8	125218487	125218687	+	-0.82938	NA	intron (NM_174853, intron 9 of 11)	intron (NM_174853, intron 9 of 11)	164392	NM_174854	244667	Mm.233504	NM_170596	ENSMUSG00000043051	Disc1	-	disrupted in schizophrenia 1	protein-coding	0.030000	0.393035			
ePOU_nocontrol_ChIP_peaks_unique-1426	chr2	103073533	103073733	+	-0.82938	NA	promoter-TSS (NM_001355473)	promoter-TSS (NM_001355473)	-42	NM_001355474	56369	Mm.24772	NM_019735	ENSMUSG00000010911	Apip	APIP2|CGI-29|Mmrp19	APAF1 interacting protein	protein-coding	0.090000	0.676617			
ePOU_nocontrol_ChIP_peaks_unique-1079	chr17	27133504	27133704	+	-0.82938	NA	intron (NM_026063, intron 1 of 3)	CpG	287	NM_001364944	67267	Mm.272389	NM_026063	ENSMUSG00000024208	Uqcc2	2900010M23Rik|Cbp6|M19|Mnf1	ubiquinol-cytochrome c reductase complex assembly factor 2	protein-coding	0.070000	0.597015			
Oct4_nocontrol_ChIP_peaks_unique-551	chr9	123366848	123367048	+	-0.82938	NA	promoter-TSS (NM_001348168)	promoter-TSS (NM_001348168)	21	NM_153168	102436	Mm.276076	NM_153168	ENSMUSG00000035202	Lars2	AI035546|Kiaa0028|LEURS	leucyl-tRNA synthetase, mitochondrial	protein-coding	0.060000	0.592040			
Oct4_nocontrol_ChIP_peaks_unique-309	chr2	91182876	91183076	+	-0.82938	NA	promoter-TSS (NM_001177719)	promoter-TSS (NM_001177719)	71	NM_001177719	228355	Mm.36410	NM_145527	ENSMUSG00000040687	Madd	9630059K23Rik|IG20	MAP-kinase activating death domain	protein-coding	0.135000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-2000	chr5	132290792	132290992	+	-0.82938	NA	intron (NM_001363480, intron 1 of 19)	intron (NM_001363480, intron 1 of 19)	252328	NM_001363480	319974	Mm.409595	NM_177047	ENSMUSG00000029673	Auts2	2700063G02Rik|A730011F23Rik|D830032G16Rik	autism susceptibility candidate 2	protein-coding	0.010000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-2449	chr8	107031317	107031517	+	-0.82938	NA	5' UTR (NM_126165, exon 1 of 11)	5' UTR (NM_126165, exon 1 of 11)	148	NM_126165	116733	Mm.236004	NM_126165	ENSMUSG00000031913	Vps4a	4930589C15Rik|AI325971|AW553189	vacuolar protein sorting 4A	protein-coding	0.115000	0.706468			
Oct4_nocontrol_ChIP_peaks_unique-409	chr5	3343664	3343864	+	-0.82938	NA	promoter-TSS (NM_009873)	promoter-TSS (NM_009873)	-129	NM_009873	12571	Mm.31672	NM_009873	ENSMUSG00000040274	Cdk6	AI504062|Crk2	cyclin-dependent kinase 6	protein-coding	0.080000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-2547	chr9	67357778	67357978	+	-0.82938	NA	intron (NM_001081242, intron 15 of 57)	intron (NM_001081242, intron 15 of 57)	-121152	NR_029576	387185		NR_029576	ENSMUSG00000076379	Mir190a	Mir190|Mirn190|mir-190|mir-190a|mmu-mir-190|mmu-mir-190a	microRNA 190a	ncRNA	0.005000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-1241	chr18	80200667	80200867	+	-0.82938	NA	promoter-TSS (NM_199197)	promoter-TSS (NM_199197)	-148	NM_199197	68731	Mm.186936	NM_199197	ENSMUSG00000024570	Rbfa	1110032A13Rik|AI595940	ribosome binding factor A	protein-coding	0.065000	0.552239			52(ATTTACTTATGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1510	chr2	159007429	159007629	+	-0.82938	NA	Intergenic	Intergenic	212722	NM_001291144	71715	Mm.315652	NM_145742	ENSMUSG00000027655	Dhx35	1200009D07Rik|Ddx35	DEAH (Asp-Glu-Ala-His) box polypeptide 35	protein-coding	0.020000	0.412935			
Oct4_nocontrol_ChIP_peaks_unique-65	chr10	80433781	80433981	+	-0.82938	NA	promoter-TSS (NM_011548)	promoter-TSS (NM_011548)	-228	NM_001164148	21423	Mm.3406	NM_011548	ENSMUSG00000020167	Tcf3	A1|AA408400|ALF2|AW209082|E12|E12/E47|E2A|E47|KA1|ME2|Pan1|Pan2|TCF-3|Tcfe2a|VDIR|bHLHb21	transcription factor 3	protein-coding	0.060000	0.482587			
Oct4_nocontrol_ChIP_peaks_unique-319	chr2	122681585	122681785	+	-0.82938	NA	3' UTR (NM_001290993, exon 6 of 6)	3' UTR (NM_001290993, exon 6 of 6)	20978	NM_001290993	22785	Mm.27801	NM_011774	ENSMUSG00000005802	Slc30a4	Znt4|lm|znT-4	solute carrier family 30 (zinc transporter), member 4	protein-coding	0.005000	0.363184			
Oct4_nocontrol_ChIP_peaks_unique-344	chr3	41563441	41563641	+	-0.82938	NA	promoter-TSS (NM_001130185)	promoter-TSS (NM_001130185)	158	NM_172303	269424	Mm.286285	NM_172303	ENSMUSG00000025764	Jade1	AU041499|D530048A03Rik|Phf17|mKIAA1807	jade family PHD finger 1	protein-coding	0.200000	0.865672			
ePOU_nocontrol_ChIP_peaks_unique-1724	chr4	15010416	15010616	+	-0.82938	NA	intron (NM_178617, intron 5 of 12)	Lx8|LINE|L1	79875	NM_001243100	100038514	Mm.331495	NM_001243100		Gm11837	-	predicted gene 11837	protein-coding	0.000000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-652	chr13	34704985	34705185	+	-0.82938	NA	Intergenic	Intergenic	-34557	NM_138746	108161	Mm.41991	NM_138746	ENSMUSG00000038246	Fam50b	D0H6S2654E|X5L|XAP-5-like	family with sequence similarity 50, member B	protein-coding	0.005000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-1602	chr3	68905472	68905672	+	-0.82938	NA	intron (NM_026641, intron 18 of 19)	intron (NM_026641, intron 18 of 19)	35986	NM_001167996	68725	Mm.45741	NM_001167996	ENSMUSG00000046999	1110032F04Rik	AI115547	RIKEN cDNA 1110032F04 gene	protein-coding	0.000000	0.482587			
ePOU_nocontrol_ChIP_peaks_unique-1678	chr3	122924344	122924544	+	-0.82938	NA	promoter-TSS (NM_024461)	promoter-TSS (NM_024461)	47	NM_024461	67704	Mm.24219	NM_024461	ENSMUSG00000054091	1810037I17Rik	5730414I01Rik|Aln	RIKEN cDNA 1810037I17 gene	protein-coding	0.115000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-1442	chr2	113621742	113621942	+	-0.82938	NA	intron (NM_001285459, intron 12 of 16)	intron (NM_001285459, intron 12 of 16)	-63248	NM_001287818	14260	Mm.4938	NM_010230	ENSMUSG00000044042	Fmn1	Fmn|formin-1|ld	formin 1	protein-coding	0.020000	0.477612			-99(TATTTTTCATGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1351	chr2	25546746	25546946	+	-0.82938	NA	promoter-TSS (NM_001290413)	promoter-TSS (NM_001290413)	94	NM_001290413	22030	Mm.3399	NM_009422	ENSMUSG00000026942	Traf2	AI325259	TNF receptor-associated factor 2	protein-coding	0.140000	0.751244			
Oct4_nocontrol_ChIP_peaks_unique-278	chr19	30030355	30030555	+	-0.82938	NA	promoter-TSS (NM_144873)	promoter-TSS (NM_144873)	-58	NM_144873	109113	Mm.313364	NM_144873	ENSMUSG00000024817	Uhrf2	2310065A22Rik|AI426270|AW214556|D130071B19Rik|Nirf	ubiquitin-like, containing PHD and RING finger domains 2	protein-coding	0.100000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-805	chr14	77959217	77959417	+	-0.82938	NA	intron (NM_178825, intron 6 of 6)	intron (NM_178825, intron 6 of 6)	55078	NM_178825	108670	Mm.68134	NM_029495	ENSMUSG00000022014	Epsti1	2310046K10Rik|5033415K03Rik|BRESI1	epithelial stromal interaction 1 (breast)	protein-coding	0.005000	0.373134	31(CATGAATTATTCATA,+,0.00),31(CATGAATTATTCATA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1060	chr17	12992488	12992688	+	-0.82938	NA	promoter-TSS (NM_175394)	promoter-TSS (NM_175394)	-49	NM_175394	60532	Mm.275521	NM_175394	ENSMUSG00000060475	Wtap	2810408K05Rik|9430038B09Rik	Wilms tumour 1-associating protein	protein-coding	0.120000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-164	chr1	179077010	179077210	+	-0.82938	NA	intron (NM_027188, intron 8 of 11)	RSINE1|SINE|B4	440931	NM_027188	69726	Mm.222338	NM_027188	ENSMUSG00000055067	Smyd3	2410008A19Rik|Zmynd1	SET and MYND domain containing 3	protein-coding	0.010000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-1615	chr3	84583354	84583554	+	-0.82938	NA	promoter-TSS (NM_001081093)	promoter-TSS (NM_001081093)	-829	NM_001293801	99889	Mm.316536	NM_001081093	ENSMUSG00000074513	Arfip1	2310030I10Rik|Arfaptin|D3Ertd598e	ADP-ribosylation factor interacting protein 1	protein-coding	0.015000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-1621	chr3	87193891	87194091	+	-0.82938	NA	Intergenic	Lx9|LINE|L1	-19244	NM_130867	170643	Mm.89552	NM_130867	ENSMUSG00000041734	Kirrel	6720469N11Rik|Kirrel1|Neph1	kirre like nephrin family adhesion molecule 1	protein-coding	0.000000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-1118	chr17	60136408	60136608	+	-0.82938	NA	Intergenic	Intergenic	-1123186	NM_001368393	67993	Mm.36507	NM_026497	ENSMUSG00000024228	Nudt12	0610016O18Rik	nudix (nucleoside diphosphate linked moiety X)-type motif 12	protein-coding	0.000000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-910	chr15	80264250	80264450	+	-0.82938	NA	promoter-TSS (NM_175109)	promoter-TSS (NM_175109)	-44	NM_175109	66538	Mm.39485	NM_175109	ENSMUSG00000051518	Rps19bp1	2510038A11Rik|AI604923|S19BP	ribosomal protein S19 binding protein 1	protein-coding	0.110000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-202	chr10	20170801	20171001	+	-0.82938	NA	promoter-TSS (NM_001358787)	promoter-TSS (NM_001358787)	-121	NM_001358787	17761	Mm.20928	NM_008635	ENSMUSG00000019996	Map7	E-MAP-115|MAP-7|Mtap7|R75000|mshi|mste|ste	microtubule-associated protein 7	protein-coding	0.045000	0.567164			
ePOU_nocontrol_ChIP_peaks_unique-612	chr12	106479757	106479957	+	-0.82938	NA	Intergenic	Intergenic	-32191	NR_036593	76639	Mm.375609	NR_036593	ENSMUSG00000092066	1700121N20Rik	-	RIKEN cDNA 1700121N20 gene	ncRNA	0.065000	0.497512			16(GCTTTGTTATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-422	chr11	69632929	69633129	+	-0.82938	NA	promoter-TSS (NM_011814)	promoter-TSS (NM_011814)	58	NM_011814	23879	Mm.41930	NM_011814	ENSMUSG00000018765	Fxr2	Fxr2h	fragile X mental retardation, autosomal homolog 2	protein-coding	0.160000	0.800995			
Oct4_nocontrol_ChIP_peaks_unique-410	chr5	16002844	16003044	+	-0.82938	NA	intron (NM_001110843, intron 1 of 38)	intron (NM_001110843, intron 1 of 38)	68253	NM_001110843	12293	Mm.159842	NM_009784	ENSMUSG00000040118	Cacna2d1	Ca(v)alpha2delta1|Cacna2|Cchl2a	calcium channel, voltage-dependent, alpha2/delta subunit 1	protein-coding	0.020000	0.422886			-96(ATTTAAAAGACAGTCA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-942	chr15	102136223	102136423	+	-0.82938	NA	promoter-TSS (NM_001033277)	promoter-TSS (NM_001033277)	-108	NM_001033277	223918	Mm.385009	NM_001033277	ENSMUSG00000036966	Spryd3	BC008150	SPRY domain containing 3	protein-coding	0.095000	0.691542			
Oct4_nocontrol_ChIP_peaks_unique-31	chr1	154118758	154118958	+	-0.82938	NA	Intergenic	Intergenic	-82329	NM_001204908	100503355	Mm.484410	NM_001204908	ENSMUSG00000066797	Zfp648	Gm10178|Gm203	zinc finger protein 648	protein-coding	0.015000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-1612	chr3	80303661	80303861	+	-0.82938	NA	Intergenic	Intergenic	417831	NM_133187	68659	Mm.427274	NM_133187	ENSMUSG00000027955	Gask1b	1110032E23Rik|2210419I08Rik|AV011458|Ened|Fam198b|GaskbB	golgi associated kinase 1B	protein-coding	0.015000	0.348259			
Oct4_nocontrol_ChIP_peaks_unique-469	chr7	59277456	59277656	+	-0.82938	NA	intron (NM_001033962, intron 4 of 10)	intron (NM_001033962, intron 4 of 10)	48806	NM_001033962	22215	Mm.9002	NM_011668	ENSMUSG00000025326	Ube3a	4732496B02|5830462N02Rik|A130086L21Rik|Hpve6a	ubiquitin protein ligase E3A	protein-coding	0.010000	0.393035		-24(CATACATATGCACA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-330	chr10	127211570	127211770	+	-0.82938	NA	promoter-TSS (NM_054097)	promoter-TSS (NM_054097)	-48	NM_054097	117150	Mm.22682	NM_054097	ENSMUSG00000025417	Pip4k2c	Pip5k2c	phosphatidylinositol-5-phosphate 4-kinase, type II, gamma	protein-coding	0.120000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-368	chr11	36257176	36257376	+	-0.82938	NA	intron (NM_011856, intron 5 of 28)	intron (NM_011856, intron 5 of 28)	-276749	NM_170779	211652	Mm.31267	NM_170779	ENSMUSG00000018849	Wwc1	AA408228|AU017197|BC037006|Kibra	WW, C2 and coiled-coil domain containing 1	protein-coding	0.010000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-1288	chr19	29063964	29064164	+	-0.82938	NA	Intergenic	Intergenic	-3237	NR_045687	100503337	Mm.103412	NR_045687	ENSMUSG00000118038	Gm9895	-	predicted gene 9895	ncRNA	0.050000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-2620	chrUn_JH584304	35423	35623	+	-0.82938	NA	Intergenic	(GAAA)n|Simple_repeat|Simple_repeat	24166	NR_003518	66776	Mm.247625	NR_003518		Pisd-ps3	4933439C20Rik	phosphatidylserine decarboxylase, pseudogene 3	pseudo	0.010000	0.333333			-20(ATCTGAAAAAAAAAAA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-237	chr16	81140849	81141049	+	-0.82938	NA	Intergenic	RLTR22_Mus|LTR|ERVK	-59748	NM_010954	17968	Mm.433941	NM_010954	ENSMUSG00000022762	Ncam2	Ncam-2|Ocam|RNCAM	neural cell adhesion molecule 2	protein-coding	0.010000	0.373134			-2(GTTTGAATGAAAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2004	chr5	136116470	136116670	+	-0.82938	NA	promoter-TSS (NM_011293)	promoter-TSS (NM_011293)	-121	NM_011293	20022	Mm.4896	NM_011293	ENSMUSG00000039771	Polr2j	14.5kDa|Polr2i|Rpb11a|Rpo2-4	polymerase (RNA) II (DNA directed) polypeptide J	protein-coding	0.085000	0.641791			
ePOU_nocontrol_ChIP_peaks_unique-155	chr1	171309415	171309615	+	-0.82938	NA	Intergenic	Intergenic	-14513	NM_001360932	66155	Mm.2815	NM_025388	ENSMUSG00000062963	Ufc1	1110021H02Rik|AA062310|ESTM29	ubiquitin-fold modifier conjugating enzyme 1	protein-coding	0.005000	0.368159			
ePOU_nocontrol_ChIP_peaks_unique-2091	chr6	61099887	61100087	+	-0.82938	NA	Intergenic	Intergenic	-80338	NM_001164316	232035	Mm.150324	NM_183310	ENSMUSG00000039578	Ccser1	6230405M12Rik|C130092O11Rik|Fam190a	coiled-coil serine rich 1	protein-coding	0.015000	0.328358			-77(TTATTTTCTTGCAAAT,+,0.00),23(ATATTGTTATGGAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1846	chr4	130359805	130360005	+	-0.82938	NA	promoter-TSS (NM_025645)	promoter-TSS (NM_025645)	87	NM_001355398	619605	Mm.297196	NM_153160	ENSMUSG00000028772	Zcchc17	2810055E05Rik|HSPC251|LDC4|pNO40|pS1D	zinc finger, CCHC domain containing 17	protein-coding	0.090000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-2543	chr9	65937476	65937676	+	-0.82938	NA	intron (NM_173185, intron 1 of 13)	intron (NM_173185, intron 1 of 13)	28566	NM_173185	214897	Mm.325816	NM_173185	ENSMUSG00000032384	Csnk1g1	9130020E21Rik	casein kinase 1, gamma 1	protein-coding	0.000000	0.358209			46(AATTTGTTATAGAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1336	chr2	14939677	14939877	+	-0.82938	NA	intron (NM_001309519, intron 2 of 12)	L1MA6|LINE|L1	66121	NM_001309519	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.010000	0.323383			
merged_common-364	chr17	35165135	35165335	+	-0.82938	NA	promoter-TSS (NM_020027)	promoter-TSS (NM_020027)	-358	NM_020027	53761	Mm.272462	NM_020027	ENSMUSG00000024393	Prrc2a	3110039B05Rik|Bat-2|Bat2|D17H6S51E|G2|Wbp12|mKIAA4178	proline-rich coiled-coil 2A	protein-coding	0.105000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-94	chr1	106630107	106630307	+	-0.82938	NA	intron (NM_009741, intron 1 of 1)	intron (NM_009741, intron 1 of 1)	-83576	NR_106164	102466254		NR_106164	ENSMUSG00000098344	Mir3473f	Gm27846|mmu-mir-3473f	microRNA 3473f	ncRNA	0.005000	0.502488			
Oct4_nocontrol_ChIP_peaks_unique-203	chr15	36938426	36938626	+	-0.82938	NA	Intergenic	Intergenic	68876	NM_026521	68036	Mm.371631	NM_026521	ENSMUSG00000062397	Zfp706	3110006P09Rik|AA793007|AW536850|C77232|Znf706	zinc finger protein 706	protein-coding	0.045000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-1445	chr2	114612543	114612743	+	-0.82938	NA	intron (NM_025675, intron 3 of 8)	intron (NM_025675, intron 3 of 8)	42321	NM_025675	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0.010000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-449	chr11	86993537	86993737	+	-0.82938	NA	5' UTR (NM_001005341, exon 1 of 5)	5' UTR (NM_001005341, exon 1 of 5)	125	NM_001005341	77864	Mm.191894	NM_001005341	ENSMUSG00000018427	Ypel2	6430570G24|E130113K08Rik	yippee like 2	protein-coding	0.115000	0.701493			
merged_common-270	chr14	73335572	73335772	+	-0.82938	NA	Intergenic	Intergenic	-9850	NM_009029	19645	Mm.273862	NM_009029	ENSMUSG00000022105	Rb1	Rb|Rb-1|pRb|pp105	RB transcriptional corepressor 1	protein-coding	0.015000	0.398010		22(TTTGCATATTTATG,+,0.00),22(TTTGCATATTTATG,-,0.00)	-50(ATTTGCATGACCTTTA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-428	chr5	146794716	146794916	+	-0.82938	NA	5' UTR (NM_011669, exon 1 of 9)	5' UTR (NM_011669, exon 1 of 9)	140	NM_011669	22217	Mm.167971	NM_011669	ENSMUSG00000029640	Usp12	Ubh1	ubiquitin specific peptidase 12	protein-coding	0.185000	0.860697			
ePOU_nocontrol_ChIP_peaks_unique-2076	chr6	49202594	49202794	+	-0.82938	NA	intron (NM_023670, intron 2 of 14)	B1_Mur1|SINE|Alu	12260	NM_023670	140488	Mm.281018	NM_023670	ENSMUSG00000029814	Igf2bp3	2610101N11Rik|AA522010|AL022933|AU045931|IMP-3|IMP3|Koc13|Neilsen|mimp3	insulin-like growth factor 2 mRNA binding protein 3	protein-coding	0.010000	0.407960			
Oct4_nocontrol_ChIP_peaks_unique-149	chr13	53285872	53286072	+	-0.82938	NA	5' UTR (NM_013846, exon 1 of 9)	5' UTR (NM_013846, exon 1 of 9)	152	NM_013846	26564	Mm.342774	NM_013846	ENSMUSG00000021464	Ror2	Ntrkr2	receptor tyrosine kinase-like orphan receptor 2	protein-coding	0.105000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-229	chr10	39481062	39481262	+	-0.82938	NA	intron (NM_001122893, intron 3 of 13)	intron (NM_001122893, intron 3 of 13)	111363	NM_001122892	14360	Mm.4848	NM_008054	ENSMUSG00000019843	Fyn	AI448320|AW552119	Fyn proto-oncogene	protein-coding	0.005000	0.318408			
Oct4_nocontrol_ChIP_peaks_unique-402	chr4	134704792	134704992	+	-0.82938	NA	promoter-TSS (NM_207237)	promoter-TSS (NM_207237)	-602	NM_207237	230815	Mm.18905	NM_207237	ENSMUSG00000037306	Man1c1	AI593348	mannosidase, alpha, class 1C, member 1	protein-coding	0.035000	0.577114			
Oct4_nocontrol_ChIP_peaks_unique-58	chr10	56753936	56754136	+	-0.82938	NA	Intergenic	Intergenic	322055	NR_152769	102640560	Mm.417249	NR_152768		Gm36595	-	predicted gene, 36595	ncRNA	0.005000	0.313433			-86(TCCTTGTTTTTCTAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-377	chr4	41314657	41314857	+	-0.82938	NA	5' UTR (NM_026893, exon 1 of 9)	5' UTR (NM_026893, exon 1 of 9)	144	NM_026893	68970	Mm.28891	NM_026893	ENSMUSG00000028436	Dcaf12	1500001L20Rik|5830424K06Rik|AA420338|AI851081|Wdr40a	DDB1 and CUL4 associated factor 12	protein-coding	0.090000	0.597015			
ePOU_nocontrol_ChIP_peaks_unique-1884	chr5	4104555	4104755	+	-0.82938	NA	promoter-TSS (NM_020010)	promoter-TSS (NM_020010)	42	NM_020010	13121	Mm.140158	NM_020010	ENSMUSG00000001467	Cyp51	AI426508|CYPLI|Cyp51a1|Ldm|P450-14DM|P450LI	cytochrome P450, family 51	protein-coding	0.100000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-1839	chr4	124751388	124751588	+	-0.82938	NA	promoter-TSS (NR_151694)	promoter-TSS (NR_151694)	-134	NR_151694	102634646	Mm.348378	NR_151694		Gm12915	-	predicted gene 12915	ncRNA	0.085000	0.631841			
ePOU_nocontrol_ChIP_peaks_unique-835	chr14	122983385	122983585	+	-0.82938	NA	promoter-TSS (NM_028651)	promoter-TSS (NM_028651)	-202	NM_028651	70551	Mm.271988	NM_028651	ENSMUSG00000041594	Tmtc4	4930403J22Rik|5730419O14Rik	transmembrane and tetratricopeptide repeat containing 4	protein-coding	0.105000	0.641791			
Oct4_nocontrol_ChIP_peaks_unique-509	chr8	81893422	81893622	+	-0.82938	NA	intron (NM_001297593, intron 9 of 23)	intron (NM_001297593, intron 9 of 23)	509064	NM_008357	16168	Mm.4392	NM_008357	ENSMUSG00000031712	Il15	AI503618|IL-15	interleukin 15	protein-coding	0.000000	0.407960			-94(AGTTACATAACAAAAG,-,0.00),4(CTATTGTCTTTTAAAT,+,0.00)
merged_common-309	chr15	84650828	84651028	+	-0.82938	NA	Intergenic	RLTR11A2|LTR|ERVK	-12278	NM_001346662	109270	Mm.291372	NM_146061	ENSMUSG00000036106	Prr5	AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1	proline rich 5 (renal)	protein-coding	0.010000	0.447761			-67(CTTTTGTTGTGCAAAC,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-317	chr2	121391786	121391986	+	-0.82938	NA	Intergenic	Intergenic	-10946	NM_080459	140476	Mm.467475	NM_080459	ENSMUSG00000033498	Strc	DFNB16	stereocilin	protein-coding	0.015000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-1369	chr2	38855180	38855380	+	-0.82938	NA	intron (NM_010264, intron 3 of 10)	intron (NM_010264, intron 3 of 10)	1450	NR_029904	723903		NR_029904	ENSMUSG00000065578	Mir181b-2	Mirn181b-2|mir-181b-2	microRNA 181b-2	ncRNA	0.010000	0.407960		64(AATGCATATTCCTA,-,0.00)	-26(ATCAAAATAACAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-704	chr13	95211379	95211579	+	-0.82938	NA	intron (NM_001170669, intron 1 of 18)	L1MC5|LINE|L1	11571	NM_001170669	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding	0.000000	0.383085			30(ATCTACAGGACAAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-814	chr14	97998582	97998782	+	-0.82938	NA	intron (NM_001038610, intron 2 of 10)	intron (NM_001038610, intron 2 of 10)	171083	NM_007826	13134	Mm.320593	NM_007826	ENSMUSG00000055639	Dach1	Dac|Dach	dachshund family transcription factor 1	protein-coding	0.000000	0.412935			-89(ATTTGCAATGGAAAGT,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-179	chr14	55721990	55722190	+	-0.82938	NA	promoter-TSS (NM_019519)	promoter-TSS (NM_019519)	112	NR_153435	56187	Mm.87216	NM_019519	ENSMUSG00000040472	Rabggta	gm	Rab geranylgeranyl transferase, a subunit	protein-coding	0.100000	0.691542			
Oct4_nocontrol_ChIP_peaks_unique-32	chr1	163337921	163338121	+	-0.82938	NA	Intergenic	(TCTG)n|Simple_repeat|Simple_repeat	-24371	NM_175686	18933	Mm.288642	NM_011127	ENSMUSG00000026586	Prrx1	A230024N07Rik|AA755424|AI385634|AI843499|K-2|Pmx|Pmx1|Prx1|mHox	paired related homeobox 1	protein-coding	0.010000	0.432836		59(TGTACATATTCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2070	chr6	44970567	44970767	+	-0.82938	NA	Intergenic	Intergenic	-89394	NM_001004357	66797	Mm.440084	NM_025771	ENSMUSG00000039419	Cntnap2	5430425M22Rik|Caspr2|mKIAA0868	contactin associated protein-like 2	protein-coding	0.000000	0.348259			
ePOU_nocontrol_ChIP_peaks_unique-1235	chr18	75216738	75216938	+	-0.82938	NA	intron (NM_027727, intron 14 of 16)	intron (NM_027727, intron 14 of 16)	80479	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.005000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-1577	chr3	53630032	53630232	+	-0.82938	NA	intron (NM_172862, intron 2 of 23)	intron (NM_172862, intron 2 of 23)	27223	NM_172862	242022	Mm.38378	NM_172862	ENSMUSG00000037016	Frem2	6030440P17Rik|8430406N05Rik|Gm409|b2b1562Clo|my|ne|nv1	Fras1 related extracellular matrix protein 2	protein-coding	0.015000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-377	chr11	44685595	44685795	+	-0.82938	NA	intron (NM_001362579, intron 7 of 16)	intron (NM_001362579, intron 7 of 16)	65467	NM_001362569	13591	Mm.439662	NM_007897	ENSMUSG00000057098	Ebf1	Ebf|O/E-1|OE-1|Olf-1|Olf1	early B cell factor 1	protein-coding	0.005000	0.383085			
Oct4_nocontrol_ChIP_peaks_unique-404	chr4	135986948	135987148	+	-0.82938	NA	exon (NM_025411, exon 1 of 6)	exon (NM_025411, exon 1 of 6)	196	NM_025411	66193	Mm.29131	NM_025411	ENSMUSG00000028669	Pithd1	1110049F12Rik|AA408179|Trp26	PITH (C-terminal proteasome-interacting domain of thioredoxin-like) domain containing 1	protein-coding	0.155000	0.751244			
ePOU_nocontrol_ChIP_peaks_unique-1415	chr2	90847081	90847281	+	-0.82938	NA	promoter-TSS (NM_001317241)	promoter-TSS (NM_001317241)	26	NM_001317243	56428	Mm.28023	NM_019758	ENSMUSG00000027282	Mtch2	2310034D24Rik|4930539J07Rik|HSPC032	mitochondrial carrier 2	protein-coding	0.140000	0.746269			
merged_common-819	chr9	20878121	20878321	+	-0.82938	NA	exon (NM_145154, exon 2 of 6)	exon (NM_145154, exon 2 of 6)	1489	NM_145154	70726	Mm.34019	NM_145154	ENSMUSG00000038742	Angptl6	6330404E11Rik|AGF|ARP3|Arp5	angiopoietin-like 6	protein-coding	0.115000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-371	chr11	37368443	37368643	+	-0.82938	NA	Intergenic	Intergenic	-290446	NR_131154	100039148	Mm.120467	NR_131154	ENSMUSG00000087388	Gm12128	-	predicted gene 12128	ncRNA	0.005000	0.223881	50(AATGAATAATTTAAA,-,0.00)		-98(TTTTGCATAAAAATTG,-,0.00),5(AATTGAATGATAATAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-203	chr10	20796552	20796752	+	-0.82938	NA	Intergenic	Intergenic	-71574	NM_013875	29863	Mm.425617	NM_013875	ENSMUSG00000019990	Pde7b	-	phosphodiesterase 7B	protein-coding	0.000000	0.273632			0(ATTTGCAAAAAAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1658	chr3	108591345	108591545	+	-0.82938	NA	promoter-TSS (NM_001358055)	promoter-TSS (NM_001358055)	167	NM_001358054	99512	Mm.285968	NM_181400	ENSMUSG00000040389	Wdr47	1810073M12Rik|AA552998|mKIAA0893	WD repeat domain 47	protein-coding	0.140000	0.716418			
merged_common-864	chrX	120643707	120643907	+	-0.82938	NA	intron (NM_001271809, intron 5 of 6)	intron (NM_001271809, intron 5 of 6)	-330581	NM_001281531	624957		NM_001281531	ENSMUSG00000083616	H2afb3	EG624957|H2A.Bbd3|H2afb3-ps	H2A histone family, member B3	protein-coding	0.005000	0.308458		-53(CATCCATATTCATT,+,0.00),-53(CATCCATATTCATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1816	chr4	106827910	106828110	+	-0.82938	NA	Intergenic	CpG	-23003	NM_001347159	329910	Mm.222956	NM_025590	ENSMUSG00000034853	Acot11	1110020M10Rik|2010309H15Rik|AW060409|BFIT|BFIT1|Thea|Them1|mKIAA0707	acyl-CoA thioesterase 11	protein-coding	0.095000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-2617	chr9	123259656	123259856	+	-0.82938	NA	exon (NM_001002267, exon 1 of 1)	exon (NM_001002267, exon 1 of 1)	1033	NM_001002267	72309	Mm.8569	NM_001002267	ENSMUSG00000054871	Tmem158	2310037P21Rik|Ris1	transmembrane protein 158	protein-coding	0.130000	0.751244			
ePOU_nocontrol_ChIP_peaks_unique-76	chr1	86509619	86509819	+	-0.82938	NA	Intergenic	Intergenic	-16838	NM_001360830	19231	Mm.19187	NM_008972	ENSMUSG00000026238	Ptma	Thym	prothymosin alpha	protein-coding	0.015000	0.577114			
ePOU_nocontrol_ChIP_peaks_unique-465	chr11	100850358	100850558	+	-0.82938	NA	5' UTR (NM_001113563, exon 1 of 19)	5' UTR (NM_001113563, exon 1 of 19)	123	NM_001113563	20851	Mm.34064	NM_011489	ENSMUSG00000020919	Stat5b	-	signal transducer and activator of transcription 5B	protein-coding	0.145000	0.786070			
ePOU_nocontrol_ChIP_peaks_unique-1498	chr2	152686806	152687006	+	-0.82938	NA	promoter-TSS (NM_025543)	promoter-TSS (NM_025543)	-242	NM_025543	66405	Mm.440291	NM_025543	ENSMUSG00000042814	Mcts2	2400002F11Rik|MCT-2	malignant T cell amplified sequence 2	protein-coding	0.100000	0.626866			
Oct4_nocontrol_ChIP_peaks_unique-4	chr1	24663202	24663402	+	-0.82938	NA	Intergenic	B4A|SINE|B4	-15242	NM_026719	68421	Mm.336563	NM_026719	ENSMUSG00000073725	Lmbrd1	0910001K20Rik|AV347960	LMBR1 domain containing 1	protein-coding	0.010000	0.378109		-54(GATGCATGTTCATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2169	chr6	146888382	146888582	+	-0.82938	NA	promoter-TSS (NM_001355729)	promoter-TSS (NM_001355729)	-12	NM_001355728	67533	Mm.103382	NM_026221	ENSMUSG00000016487	Ppfibp1	4632409B19Rik|AW214454|AW261454	PTPRF interacting protein, binding protein 1 (liprin beta 1)	protein-coding	0.140000	0.800995			
ePOU_nocontrol_ChIP_peaks_unique-2603	chr9	113162324	113162524	+	-0.82938	NA	Intergenic	Intergenic	424728	NR_040760	102688	Mm.394901	NR_040760	ENSMUSG00000109890	AU023762	-	expressed sequence AU023762	ncRNA	0.005000	0.328358			
ePOU_nocontrol_ChIP_peaks_unique-2104	chr6	72743672	72743872	+	-0.82938	NA	intron (NM_009332, intron 3 of 11)	intron (NM_009332, intron 3 of 11)	45273	NM_009332	21415	Mm.440067	NM_009332	ENSMUSG00000055799	Tcf7l1	Tcf-3|Tcf3|bHLHb21	transcription factor 7 like 1 (T cell specific, HMG box)	protein-coding	0.005000	0.542289			-21(TTTTGCAAGCCAAAAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-534	chr12	41023970	41024170	+	-0.82938	NA	promoter-TSS (NM_053122)	promoter-TSS (NM_053122)	-20	NM_053122	93757	Mm.363813	NM_053122	ENSMUSG00000056899	Immp2l	AI853880|IMP2|Tg(HLA-A/H2-D)2Enge	IMP2 inner mitochondrial membrane peptidase-like (S. cerevisiae)	protein-coding	0.150000	0.781095			
ePOU_nocontrol_ChIP_peaks_unique-2402	chr8	70897518	70897718	+	-0.82938	NA	promoter-TSS (NM_029751)	promoter-TSS (NM_029751)	-175	NM_029751	76808	Mm.379251	NM_029751	ENSMUSG00000045128	Rpl18a	2510019J09Rik	ribosomal protein L18A	protein-coding	0.085000	0.537313			
Oct4_nocontrol_ChIP_peaks_unique-334	chr2	168955241	168955441	+	-0.82938	NA	5' UTR (NM_009564, exon 1 of 6)	5' UTR (NM_009564, exon 1 of 6)	246	NM_009564	22722	Mm.2095	NM_009564	ENSMUSG00000027551	Zfp64	Gm38422	zinc finger protein 64	protein-coding	0.065000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-2357	chr8	32368019	32368219	+	-0.82938	NA	Intergenic	Intergenic	216224	NR_046039	666589	Mm.367675	NR_046039		Gm8179	EG666589	predicted gene 8179	ncRNA	0.005000	0.278607			-32(CATTTGGAATGCAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-310	chr2	92183548	92183748	+	-0.82938	NA	promoter-TSS (NM_001362833)	promoter-TSS (NM_001362833)	-534	NM_001362829	192285	Mm.330408	NM_138755	ENSMUSG00000058318	Phf21a	80kDa|BHC80a|Bhc|Bhc80|D030065N23Rik|PFTF1|mBHC80	PHD finger protein 21A	protein-coding	0.195000	0.860697			
ePOU_nocontrol_ChIP_peaks_unique-2525	chr9	55938124	55938324	+	-0.82938	NA	promoter-TSS (NM_001081341)	promoter-TSS (NM_001081341)	-105	NM_001357652	244891	Mm.86588	NM_175536	ENSMUSG00000034007	Scaper	C430017I08|D530014O03Rik|Zfp291	S phase cyclin A-associated protein in the ER	protein-coding	0.110000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-315	chr10	115520352	115520552	+	-0.82938	NA	intron (NM_010195, intron 2 of 17)	intron (NM_010195, intron 2 of 17)	-49534	NM_029982	77798	Mm.446685	NM_029982	ENSMUSG00000092210	A930009A15Rik	-	RIKEN cDNA A930009A15 gene	protein-coding	0.010000	0.442786			
Oct4_nocontrol_ChIP_peaks_unique-166	chr14	16249348	16249548	+	-0.82938	NA	promoter-TSS (NM_001359882)	promoter-TSS (NM_001359882)	134	NM_001362432	59007	Mm.258381	NM_021504	ENSMUSG00000021785	Ngly1	1110002C09Rik|PNGase|Png1	N-glycanase 1	protein-coding	0.110000	0.721393			
Oct4_nocontrol_ChIP_peaks_unique-244	chr17	41486257	41486457	+	-0.82938	NA	Intergenic	Intergenic	551672	NM_008650	17850	Mm.259884	NM_008650	ENSMUSG00000023921	Mmut	D230010K02Rik|Mcm|Mut	methylmalonyl-Coenzyme A mutase	protein-coding	0.000000	0.288557	-43(TTTAAATAATGCATT,+,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-186	chr1	194593451	194593651	+	-0.82938	NA	Intergenic	Intergenic	-26278	NM_008882	18845	Mm.2251	NM_008882	ENSMUSG00000026640	Plxna2	2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463	plexin A2	protein-coding	0.015000	0.402985			15(ATTTGAATAGGAATGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2117	chr6	90369590	90369790	+	-0.82938	NA	exon (NM_173002, exon 1 of 10)	exon (NM_173002, exon 1 of 10)	196	NM_173002	80292	Mm.100116	NM_030260	ENSMUSG00000034430	Zxdc	A930012H20|B930086F11Rik|BC003332	ZXD family zinc finger C	protein-coding	0.135000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-416	chr11	65807159	65807359	+	-0.82938	NA	promoter-TSS (NM_001302375)	promoter-TSS (NM_001302375)	84	NM_001302374	52712	Mm.340052	NM_026107	ENSMUSG00000018347	Zkscan6	1700128E15Rik|D11Ertd714e|KOX11|Zfp535|Znf18	zinc finger with KRAB and SCAN domains 6	protein-coding	0.135000	0.716418			
ePOU_nocontrol_ChIP_peaks_unique-816	chr14	99974844	99975044	+	-0.82938	NA	intron (NM_010636, intron 4 of 6)	intron (NM_010636, intron 4 of 6)	174852	NM_010636	16597	Mm.396499	NM_010636	ENSMUSG00000072294	Klf12	2700063E05Rik|AI225908|AI315654|AP-2rep|B130052C06Rik|D530033K05Rik	Kruppel-like factor 12	protein-coding	0.015000	0.447761			62(ATTTCCATGACTAAGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1209	chr18	56673686	56673886	+	-0.82938	NA	Intergenic	Intergenic	-34027	NM_010721	16906	Mm.4105	NM_010721	ENSMUSG00000024590	Lmnb1	-	lamin B1	protein-coding	0.010000	0.472637			
ePOU_nocontrol_ChIP_peaks_unique-1302	chr19	42752862	42753062	+	-0.82938	NA	promoter-TSS (NM_029011)	promoter-TSS (NM_029011)	-187	NM_029011	74580	Mm.329858	NM_029011	ENSMUSG00000060224	Pyroxd2	3830409H07Rik|4833409A17Rik	pyridine nucleotide-disulphide oxidoreductase domain 2	protein-coding	0.025000	0.547264			
ePOU_nocontrol_ChIP_peaks_unique-2013	chr5	141422389	141422589	+	-0.82938	NA	intron (NM_177879, intron 1 of 44)	intron (NM_177879, intron 1 of 44)	180955	NM_177879	330222	Mm.151931	NM_177879	ENSMUSG00000039683	Sdk1	5330440E10|6720466O15Rik	sidekick cell adhesion molecule 1	protein-coding	0.000000	0.452736			
ePOU_nocontrol_ChIP_peaks_unique-1407	chr2	79910388	79910588	+	-0.82938	NA	intron (NM_001159582, intron 3 of 15)	intron (NM_001159582, intron 3 of 15)	-2089	NM_001009978	18573	Mm.40678	NM_016744	ENSMUSG00000059173	Pde1a	AI987702|AW125737	phosphodiesterase 1A, calmodulin-dependent	protein-coding	0.005000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-843	chr15	10485965	10486165	+	-0.82938	NA	promoter-TSS (NM_026396)	promoter-TSS (NM_026396)	27	NM_001289447	19355	Mm.38376	NM_011232	ENSMUSG00000022248	Rad1	mRAD1	RAD1 checkpoint DNA exonuclease	protein-coding	0.070000	0.616915			
ePOU_nocontrol_ChIP_peaks_unique-2386	chr8	51448133	51448333	+	-0.82938	NA	Intergenic	Intergenic	-908378	NR_151738	330767	Mm.246790	NR_151738	ENSMUSG00000110013	1190028D05Rik	-	RIKEN cDNA 1190028D05 gene	ncRNA	0.010000	0.333333			
ePOU_nocontrol_ChIP_peaks_unique-1535	chr3	9705095	9705295	+	-0.82938	NA	intron (NM_053182, intron 3 of 7)	intron (NM_053182, intron 3 of 7)	-95110	NM_133218	170753	Mm.212908	NM_133218	ENSMUSG00000040209	Zfp704	C030026M03|C030034L19Rik|Gig1|Znf704	zinc finger protein 704	protein-coding	0.015000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-1521	chr2	172999991	173000191	+	-0.82938	NA	promoter-TSS (NM_175112)	promoter-TSS (NM_175112)	-26	NM_175112	66679	Mm.4113	NM_175112	ENSMUSG00000027509	Rae1	3230401I12Rik|D2Ertd342e|MNRP|MNRP41	ribonucleic acid export 1	protein-coding	0.100000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-750	chr14	20546161	20546361	+	-0.82938	NA	promoter-TSS (NR_033571)	promoter-TSS (NR_033571)	-32	NR_033571	75602	Mm.437061	NR_033571	ENSMUSG00000084925	1810062O18Rik	-	RIKEN cDNA 1810062O18 gene	ncRNA	0.095000	0.756219			
Oct4_nocontrol_ChIP_peaks_unique-331	chr2	162356201	162356401	+	-0.82938	NA	intron (NM_001291151, intron 2 of 30)	intron (NM_001291151, intron 2 of 30)	-34512	NR_040617	77645	Mm.447752	NR_040617	ENSMUSG00000084919	Ptprtos	C330008G21Rik	protein tyrosine phosphatase, receptor type T, opposite strand	ncRNA	0.015000	0.313433		44(CATGAATATGCATT,+,0.00),44(CATGAATATGCATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1093	chr17	33629167	33629367	+	-0.82938	NA	intron (NM_026712, intron 1 of 5)	CpG	175	NR_034153	328801	Mm.181488	NM_026712	ENSMUSG00000073423	Zfp414	0610030H11Rik|Znf414	zinc finger protein 414	protein-coding	0.090000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-1568	chr3	45246656	45246856	+	-0.82938	NA	Intergenic	MTEa|LTR|ERVL-MaLR	131504	NR_045172	72511	Mm.140700	NR_045172	ENSMUSG00000097040	2610316D01Rik	-	RIKEN cDNA 2610316D01 gene	ncRNA	0.005000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-1744	chr4	41157368	41157568	+	-0.82938	NA	intron (NM_026275, intron 1 of 4)	intron (NM_026275, intron 1 of 4)	21447	NM_026275	67615	Mm.389540	NM_026275	ENSMUSG00000036241	Ube2r2	1200003M11Rik|Cdc34b|Ubc3b	ubiquitin-conjugating enzyme E2R 2	protein-coding	0.005000	0.368159			
Oct4_nocontrol_ChIP_peaks_unique-360	chr3	98338976	98339176	+	-0.82938	NA	intron (NM_016966, intron 1 of 11)	intron (NM_016966, intron 1 of 11)	893	NM_016966	236539	Mm.16898	NM_016966	ENSMUSG00000053398	Phgdh	3-PGDH|3PGDH|4930479N23|A10|PGAD|PGD|PGDH|SERA	3-phosphoglycerate dehydrogenase	protein-coding	0.090000	0.582090			
Oct4_nocontrol_ChIP_peaks_unique-484	chr7	114307956	114308156	+	-0.82938	NA	Intergenic	Intergenic	-31940	NM_011965	26440	Mm.121265	NM_011965	ENSMUSG00000030751	Psma1	C2|HC2|Pros-30|alpha-type	proteasome (prosome, macropain) subunit, alpha type 1	protein-coding	0.005000	0.323383		-9(TATGAATATTCAAA,+,0.00),-9(TATGAATATTCAAA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2430	chr8	88138043	88138243	+	-0.82938	NA	promoter-TSS (NR_106039)	promoter-TSS (NR_106039)	-63	NR_106039	102465649		NR_106039	ENSMUSG00000099080	Mir7071	Gm27623|mmu-mir-7071	microRNA 7071	ncRNA	0.130000	0.741294			
ePOU_nocontrol_ChIP_peaks_unique-1716	chr3	158851113	158851313	+	-0.82938	NA	Intergenic	MLT2B1|LTR|ERVL	-225151	NR_040750	624759	Mm.491054	NR_040750	ENSMUSG00000106053	Gm20752	-	predicted gene, 20752	ncRNA	0.005000	0.323383			
Oct4_nocontrol_ChIP_peaks_unique-52	chr10	24575427	24575627	+	-0.82938	NA	intron (NR_163910, intron 3 of 4)	RLTR20A4|LTR|ERVK	-19915	NM_010217	14219	Mm.390287	NM_010217	ENSMUSG00000019997	Ccn2	Ctgf|Fisp12|Hcs24|fisp-12	cellular communication network factor 2	protein-coding	0.015000	0.393035		-4(GATGAATTTGTATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2536	chr9	62640170	62640370	+	-0.82938	NA	Intergenic	Intergenic	-37585	NM_176922	319480	Mm.34883	NM_176922	ENSMUSG00000032243	Itga11	4732459H24Rik	integrin alpha 11	protein-coding	0.005000	0.303483			-88(ATTTGCAAATGAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1860	chr4	139611874	139612074	+	-0.82938	NA	intron (NM_183148, intron 8 of 11)	intron (NM_183148, intron 8 of 11)	-10920	NM_175438	212647	Mm.273571	NM_175438	ENSMUSG00000028737	Aldh4a1	A930035F14Rik|Ahd-1|Ahd1|Aldh4|Aldh5a1|E330022C09|P5cd|P5cdh|P5cdhl|P5cdhs|Ssdh1	aldehyde dehydrogenase 4 family, member A1	protein-coding	0.010000	0.432836			
ePOU_nocontrol_ChIP_peaks_unique-1150	chr17	87314793	87314993	+	-0.82938	NA	intron (NM_028639, intron 5 of 19)	intron (NM_028639, intron 5 of 19)	32007	NM_028639	225049	Mm.77396	NM_028639	ENSMUSG00000036918	Ttc7	1110035E02Rik|1700007L07Rik|Ttc7a|fsn|hea	tetratricopeptide repeat domain 7	protein-coding	0.015000	0.542289			
Oct4_nocontrol_ChIP_peaks_unique-206	chr15	50302719	50302919	+	-0.82938	NA	Intergenic	Intergenic	586230	NM_001310485	83925	Mm.30466	NM_032000	ENSMUSG00000038679	Trps1	AI115454|AI447310|D15Ertd586e	transcriptional repressor GATA binding 1	protein-coding	0.000000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-2039	chr6	15865275	15865475	+	-0.82938	NA	Intergenic	Intergenic	144714	NM_175088	16543	Mm.1314	NM_175088	ENSMUSG00000041390	Mdfic	Kdt1|Mdfid	MyoD family inhibitor domain containing	protein-coding	0.010000	0.373134			
ePOU_nocontrol_ChIP_peaks_unique-1463	chr2	126629251	126629451	+	-0.82938	NA	3' UTR (NM_207669, exon 9 of 9)	3' UTR (NM_207669, exon 9 of 9)	-10673	NM_008230	15186	Mm.18603	NM_008230	ENSMUSG00000027360	Hdc	AW108189|Hdc-a|Hdc-c|Hdc-e|Hdc-s	histidine decarboxylase	protein-coding	0.010000	0.388060			-97(ATTTCCATAAGAATAA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-228	chr16	34274772	34274972	+	-0.82938	NA	intron (NM_177357, intron 10 of 59)	Lx8|LINE|L1	239155	NM_001164268	545156	Mm.82274	NM_177357	ENSMUSG00000061751	Kalrn	2210407G14Rik|AV235988|DUET|E530005C20Rik|Gm539|Hapip|TRAD	kalirin, RhoGEF kinase	protein-coding	0.000000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-488	chr11	116335304	116335504	+	-0.82938	NA	promoter-TSS (NM_008240)	promoter-TSS (NM_008240)	-50	NM_008240	15223	Mm.378938	NM_008240	ENSMUSG00000034227	Foxj1	FKHL-13|HFH-4|Hfh4	forkhead box J1	protein-coding	0.105000	0.686567			
Oct4_nocontrol_ChIP_peaks_unique-420	chr5	74792255	74792455	+	-0.82938	NA	Intergenic	Intergenic	-89452	NM_001159577	16924	Mm.440403	NM_010727	ENSMUSG00000029228	Lnx1	Lnx	ligand of numb-protein X 1	protein-coding	0.025000	0.547264			
Oct4_nocontrol_ChIP_peaks_unique-386	chr4	58677824	58678024	+	-0.82938	NA	Intergenic	Intergenic	107796	NM_146920	258922	Mm.223327	NM_146920	ENSMUSG00000043385	Olfr267	MOR262-1	olfactory receptor 267	protein-coding	0.010000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-960	chr16	16870597	16870797	+	-0.82938	NA	promoter-TSS (NM_001326576)	promoter-TSS (NM_001326576)	-39	NM_011624	21976	Mm.326089	NM_011624	ENSMUSG00000022779	Top3b	-	topoisomerase (DNA) III beta	protein-coding	0.050000	0.587065			
ePOU_nocontrol_ChIP_peaks_unique-235	chr10	53812549	53812749	+	-0.82938	NA	Intergenic	Intergenic	-61740	NM_001081428	75906	Mm.436785	NM_001081428	ENSMUSG00000019856	Fam184a	3110012E06Rik|4930438C08Rik|4930589M24Rik	family with sequence similarity 184, member A	protein-coding	0.010000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-634	chr13	18181786	18181986	+	-0.82938	NA	intron (NM_175006, intron 3 of 7)	intron (NM_175006, intron 3 of 7)	-81684	NR_046032	73992	Mm.159110	NR_046032	ENSMUSG00000113470	4930448F12Rik	-	RIKEN cDNA 4930448F12 gene	ncRNA	0.010000	0.338308			
ePOU_nocontrol_ChIP_peaks_unique-2594	chr9	107568912	107569112	+	-0.82938	NA	promoter-TSS (NM_010489)	promoter-TSS (NM_010489)	-151	NM_010489	15587	Mm.4834	NM_010489	ENSMUSG00000010047	Hyal2	AI256841|AU020858|AW555733	hyaluronoglucosaminidase 2	protein-coding	0.045000	0.522388			
ePOU_nocontrol_ChIP_peaks_unique-291	chr10	95883744	95883944	+	-0.82938	NA	Intergenic	Intergenic	-56819	NM_001001932	216238	Mm.210035	NM_001001932	ENSMUSG00000036499	Eea1	A430109M19Rik|B230358H09Rik|ZFYVE2	early endosome antigen 1	protein-coding	0.010000	0.378109			
ePOU_nocontrol_ChIP_peaks_unique-784	chr14	58087412	58087612	+	-0.82938	NA	intron (NM_013518, intron 2 of 2)	intron (NM_013518, intron 2 of 2)	14826	NM_013518	14180	Mm.8846	NM_013518	ENSMUSG00000021974	Fgf9	Eks	fibroblast growth factor 9	protein-coding	0.015000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-1805	chr4	100664901	100665101	+	-0.82938	NA	Intergenic	Intergenic	-111678	NM_198037	320508	Mm.151962	NM_198037	ENSMUSG00000028532	Cachd1	1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573	cache domain containing 1	protein-coding	0.010000	0.452736			
Oct4_nocontrol_ChIP_peaks_unique-198	chr15	23231612	23231812	+	-0.82938	NA	intron (NM_001081299, intron 3 of 11)	intron (NM_001081299, intron 3 of 11)	195249	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0.000000	0.258706			28(ATTTTAAAAACAAAAT,-,0.00),62(ATTTGTAAGACAATTC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1321	chr19	55556339	55556539	+	-0.82938	NA	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	145765	NR_045318	77594	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.025000	0.542289			
ePOU_nocontrol_ChIP_peaks_unique-897	chr15	76119562	76119762	+	-0.82938	NA	5' UTR (NM_144848, exon 1 of 2)	5' UTR (NM_144848, exon 1 of 2)	533	NM_144848	223650	Mm.259929	NM_144848		Eppk1	6230424I18Rik|EPIPL|EPIPL1|EPPK	epiplakin 1	protein-coding	0.025000	0.597015			
ePOU_nocontrol_ChIP_peaks_unique-1877	chr4	155066945	155067145	+	-0.82938	NA	promoter-TSS (NM_001042407)	promoter-TSS (NM_001042407)	15	NM_001042407	668173	Mm.133114	NM_001042407	ENSMUSG00000029047	Pex10	AV128229|Gm142	peroxisomal biogenesis factor 10	protein-coding	0.140000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-1569	chr3	46324755	46324955	+	-0.82938	NA	Intergenic	Intergenic	123086	NM_001101479	241989	Mm.119234	NM_001101479	ENSMUSG00000090919	Pabpc4l	C330050A14Rik|EG241989	poly(A) binding protein, cytoplasmic 4-like	protein-coding	0.000000	0.243781			
ePOU_nocontrol_ChIP_peaks_unique-2569	chr9	88438950	88439150	+	-0.82938	NA	promoter-TSS (NM_172926)	promoter-TSS (NM_172926)	-121	NM_172926	244962	Mm.439873	NM_172926	ENSMUSG00000032422	Snx14	B830022K16|C330035N22Rik|YR-14	sorting nexin 14	protein-coding	0.100000	0.651741			
Oct4_nocontrol_ChIP_peaks_unique-321	chr2	126222591	126222791	+	-0.82938	NA	Intergenic	Intergenic	70550	NM_001355583	69185	Mm.29019	NM_026981	ENSMUSG00000023330	Dtwd1	1810033A06Rik	DTW domain containing 1	protein-coding	0.000000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-1446	chr2	114710372	114710572	+	-0.82938	NA	Intergenic	L1MEd|LINE|L1	-55508	NM_001356438	66632	Mm.117809	NM_025675	ENSMUSG00000057147	Dph6	5730421E18Rik|Atpbd4	diphthamine biosynthesis 6	protein-coding	0.005000	0.263682		-65(TGTGCATATTTATT,-,0.00)	-56(TTATTATCATTCTTAT,+,0.00),-50(TCATTCTTATGCAATA,+,0.00),-2(CTTTTCTCATACACAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2153	chr6	124712211	124712411	+	-0.82938	NA	promoter-TSS (NM_007531)	promoter-TSS (NM_007531)	22	NM_007531	12034	Mm.36241	NM_007531	ENSMUSG00000004264	Phb2	AU044498|BAP|Bap37|Bcap37|REA	prohibitin 2	protein-coding	0.110000	0.726368			
ePOU_nocontrol_ChIP_peaks_unique-1506	chr2	155203063	155203263	+	-0.82938	NA	intron (NM_008395, intron 15 of 24)	intron (NM_008395, intron 15 of 24)	-33370	NM_025947	67068	Mm.23693	NM_025947	ENSMUSG00000047459	Dynlrb1	2010012N15Rik|2010320M17Rik|9430076K19Rik|AV124457|DNLC2A|Dncl2a|km23-1	dynein light chain roadblock-type 1	protein-coding	0.005000	0.313433			6(CAATTCATATTCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2329	chr7	142387889	142388089	+	-0.82938	NA	promoter-TSS (NM_009983)	promoter-TSS (NM_009983)	-162	NM_009983	13033	Mm.231395	NM_009983	ENSMUSG00000007891	Ctsd	CD|CatD	cathepsin D	protein-coding	0.105000	0.686567			
ePOU_nocontrol_ChIP_peaks_unique-1443	chr2	113780521	113780721	+	-0.82938	NA	intron (NM_009162, intron 5 of 5)	intron (NM_009162, intron 5 of 5)	-21973	NM_011824	23892	Mm.166318	NM_011824	ENSMUSG00000074934	Grem1	Cktsf1b1|Drm|Grem|ld	gremlin 1, DAN family BMP antagonist	protein-coding	0.010000	0.437811			-94(AATTGCATCAGAAAAG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-204	chr15	39672605	39672805	+	-0.82938	NA	intron (NM_001256384, intron 1 of 5)	intron (NM_001256384, intron 1 of 5)	13194	NM_001256384	116838	Mm.309296	NM_053271	ENSMUSG00000037386	Rims2	2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751	regulating synaptic membrane exocytosis 2	protein-coding	0.025000	0.462687			-6(CCATGGATATGCAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-308	chr2	83760090	83760290	+	-0.82938	NA	intron (NM_008402, intron 4 of 29)	intron (NM_008402, intron 4 of 29)	35793	NM_008402	16410	Mm.227	NM_008402	ENSMUSG00000027087	Itgav	1110004F14Rik|2610028E01Rik|CD51|D430040G12Rik	integrin alpha V	protein-coding	0.005000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-78	chr1	86859275	86859475	+	-0.82938	NA	intron (NM_153530, intron 8 of 20)	intron (NM_153530, intron 8 of 20)	155571	NM_001172157	208718	Mm.389152	NM_153530	ENSMUSG00000053333	Dis3l2	4930429A22Rik|8030493P09Rik	DIS3 like 3'-5' exoribonuclease 2	protein-coding	0.000000	0.283582			-18(CATTTGTAATGTAAAG,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-222	chr16	5000592	5000792	+	-0.82938	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-2840	NM_029374	71089	Mm.87382	NM_027669	ENSMUSG00000022542	Sept12	1700028G04Rik|4933413B09Rik|Septin12	septin 12	protein-coding	0.000000	0.373134		-63(TATACATATTCATT,+,0.00),-63(TATACATATTCATT,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1012	chr16	50432358	50432558	+	-0.82938	NA	promoter-TSS (NM_001347240)	promoter-TSS (NM_001347240)	8	NM_001347240	70508	Mm.28940	NM_027444	ENSMUSG00000022641	Bbx	5530401J07Rik|5730403O13Rik	bobby sox HMG box containing	protein-coding	0.055000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-1451	chr2	117522657	117522857	+	-0.82938	NA	Intergenic	Lx7|LINE|L1	-179880	NM_011246	19419	Mm.42150	NM_011246	ENSMUSG00000027347	Rasgrp1	Rasgrp|calDAG-GEFII	RAS guanyl releasing protein 1	protein-coding	0.005000	0.303483		84(TATTCATATGCATT,+,0.00),84(TATTCATATGCATT,-,0.00)	-24(ATTTTCAAGGAAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-829	chr14	120342649	120342849	+	-0.82938	NA	intron (NM_001360380, intron 2 of 7)	intron (NM_001360380, intron 2 of 7)	36297	NM_001360376	105559	Mm.238266	NM_175341	ENSMUSG00000022139	Mbnl2	1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072	muscleblind like splicing factor 2	protein-coding	0.010000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-1327	chr2	4954662	4954862	+	-0.82938	NA	Intergenic	BGLII|LTR|ERVK	-21360	NM_001113558	68527	Mm.27791	NM_026754	ENSMUSG00000026668	Ucma	1110017I16Rik|AW121955|Grp	upper zone of growth plate and cartilage matrix associated	protein-coding	0.015000	0.477612			
ePOU_nocontrol_ChIP_peaks_unique-1340	chr2	17889964	17890164	+	-0.82938	NA	Intergenic	Intergenic	106894	NM_026627	68231	Mm.23887	NM_026627	ENSMUSG00000062651	H2al2a	1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1	H2A histone family member L2A	protein-coding	0.015000	0.452736			
Oct4_nocontrol_ChIP_peaks_unique-373	chr4	11532939	11533139	+	-0.82938	NA	intron (NM_001081183, intron 17 of 24)	intron (NM_001081183, intron 17 of 24)	-25881	NM_001256145	623474	Mm.491200	NM_177285	ENSMUSG00000078773	Rad54b	E130016E03Rik	RAD54 homolog B (S. cerevisiae)	protein-coding	0.000000	0.348259			44(GGTTTGTTATGCAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2608	chr9	116010302	116010502	+	-0.82938	NA	intron (NM_028638, intron 12 of 14)	intron (NM_028638, intron 12 of 14)	100947	NM_028638	73748	Mm.485018	NM_028638	ENSMUSG00000056880	Gadl1	1110027M19Rik|ADC|CSADC	glutamate decarboxylase-like 1	protein-coding	0.015000	0.323383			
ePOU_nocontrol_ChIP_peaks_unique-1474	chr2	135092830	135093030	+	-0.82938	NA	intron (NM_001145830, intron 3 of 31)	intron (NM_001145830, intron 3 of 31)	122686	NR_040517	78805	Mm.78702	NR_040517	ENSMUSG00000085247	4930545L23Rik	-	RIKEN cDNA 4930545L23 gene	ncRNA	0.010000	0.407960			
Oct4_nocontrol_ChIP_peaks_unique-487	chr7	126792306	126792506	+	-0.82938	NA	promoter-TSS (NM_001360464)	promoter-TSS (NM_001360464)	-42	NM_001360464	56420	Mm.41998	NM_019674	ENSMUSG00000030697	Ppp4c	1110002D08Rik|AU016079|PP-X|PP4C|Ppx|pp4	protein phosphatase 4, catalytic subunit	protein-coding	0.125000	0.721393			
Oct4_nocontrol_ChIP_peaks_unique-37	chr1	173852452	173852652	+	-0.82938	NA	Intergenic	RLTR22_Mus|LTR|ERVK	27635	NM_001170853	100040462	Mm.463437	NM_001170853	ENSMUSG00000090272	Mndal	Gm2785|Ifi212	myeloid nuclear differentiation antigen like	protein-coding	0.005000	0.373134			24(GTTTGAATGAAAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1095	chr17	34836926	34837126	+	-0.82938	NA	promoter-TSS (NM_001163770)	promoter-TSS (NM_001163770)	7	NM_001163770	112403	Mm.275309	NM_033613	ENSMUSG00000040482	Dxo	Dom3z|NG6	decapping exoribonuclease	protein-coding	0.120000	0.686567			
Oct4_nocontrol_ChIP_peaks_unique-61	chr10	74800103	74800303	+	-0.82938	NA	Intergenic	Intergenic	-166974	NM_010311	14687	Mm.32595	NM_010311	ENSMUSG00000040009	Gnaz	AI847979|Gz	guanine nucleotide binding protein, alpha z subunit	protein-coding	0.010000	0.432836			
Oct4_nocontrol_ChIP_peaks_unique-43	chr10	7189162	7189362	+	-0.82938	NA	intron (NM_172546, intron 1 of 12)	intron (NM_172546, intron 1 of 12)	22975	NM_172546	215748	Mm.37984	NM_172546	ENSMUSG00000015202	Cnksr3	6820402C05|BC024086|Magi1	Cnksr family member 3	protein-coding	0.010000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-1719	chr4	11156048	11156248	+	-0.82938	NA	promoter-TSS (NM_001199105)	promoter-TSS (NM_001199105)	-293	NM_021897	60599	Mm.393018	NM_021897	ENSMUSG00000028211	Trp53inp1	2700057G22Rik|SIP|SIP18|SIP27|Stinp|Teap|p53DINP1	transformation related protein 53 inducible nuclear protein 1	protein-coding	0.060000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-1749	chr4	44012429	44012629	+	-0.82938	NA	promoter-TSS (NM_001369159)	promoter-TSS (NM_001369159)	-141	NM_001369158	12757	Mm.298875	NM_016760	ENSMUSG00000028478	Clta	AV026556|Lca	clathrin, light polypeptide (Lca)	protein-coding	0.035000	0.597015			
ePOU_nocontrol_ChIP_peaks_unique-925	chr15	91673002	91673202	+	-0.82938	NA	promoter-TSS (NM_025730)	promoter-TSS (NM_025730)	-122	NM_025730	66725	Mm.37558	NM_025730	ENSMUSG00000036273	Lrrk2	4921513O20Rik|9330188B09Rik|AW561911|D630001M17Rik|Gm927|cI-46	leucine-rich repeat kinase 2	protein-coding	0.100000	0.681592			
ePOU_nocontrol_ChIP_peaks_unique-2521	chr9	52048105	52048305	+	-0.82938	NA	5' UTR (NM_009041, exon 1 of 14)	5' UTR (NM_009041, exon 1 of 14)	264	NM_009041	19684	Mm.245746	NM_009041	ENSMUSG00000032050	Rdx	AA516625	radixin	protein-coding	0.150000	0.810945			
ePOU_nocontrol_ChIP_peaks_unique-746	chr14	16957918	16958118	+	-0.82938	NA	intron (NM_001289760, intron 1 of 9)	intron (NM_001289760, intron 1 of 9)	124313	NM_001289761	218772	Mm.259318	NM_011243	ENSMUSG00000017491	Rarb	A830025K23|Hap|Nr1b2	retinoic acid receptor, beta	protein-coding	0.015000	0.383085			
Oct4_nocontrol_ChIP_peaks_unique-481	chr7	109275624	109275824	+	-0.82938	NA	Intergenic	Intergenic	-100517	NM_001302205	109594	Mm.360145	NM_057173	ENSMUSG00000036111	Lmo1	Rbtn-1|Rbtn1|Ttg1	LIM domain only 1	protein-coding	0.010000	0.402985			
ePOU_nocontrol_ChIP_peaks_unique-2359	chr8	34108545	34108745	+	-0.82938	NA	promoter-TSS (NM_011722)	promoter-TSS (NM_011722)	67	NM_011722	22428	Mm.150373	NM_011722	ENSMUSG00000031516	Dctn6	AU044699|WS-3|p27	dynactin 6	protein-coding	0.050000	0.517413			
ePOU_nocontrol_ChIP_peaks_unique-1187	chr18	35118978	35119178	+	-0.82938	NA	intron (NM_009818, intron 1 of 17)	CpG	166	NM_009818	12385	Mm.18962	NM_009818	ENSMUSG00000037815	Ctnna1	2010010M04Rik|AA517462|AI988031|Catna1	catenin (cadherin associated protein), alpha 1	protein-coding	0.130000	0.781095			
Oct4_nocontrol_ChIP_peaks_unique-419	chr5	69083071	69083271	+	-0.82938	NA	Intergenic	Intergenic	258538	NM_175519	243043	Mm.234821	NM_175519	ENSMUSG00000037653	Kctd8	A730087N02Rik	potassium channel tetramerisation domain containing 8	protein-coding	0.000000	0.348259			83(CCCTTGTTTTGTTAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-473	chr7	65668464	65668664	+	-0.82938	NA	intron (NM_172310, intron 10 of 18)	intron (NM_172310, intron 10 of 18)	23666	NM_172310	272396	Mm.35127	NM_172310	ENSMUSG00000030515	Tarsl2	A530046H20Rik	threonyl-tRNA synthetase-like 2	protein-coding	0.000000	0.358209			57(GGTTTGTAATGGAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-437	chr6	47877826	47878026	+	-0.82938	NA	intron (NM_146175, intron 1 of 7)	CpG	371	NM_146175	101095	Mm.440186	NM_146175	ENSMUSG00000025821	Zfp282	AI449432|C81429|E430019K09Rik|HUB1	zinc finger protein 282	protein-coding	0.160000	0.850746			
ePOU_nocontrol_ChIP_peaks_unique-1024	chr16	72662883	72663083	+	-0.82938	NA	promoter-TSS (NM_019413)	promoter-TSS (NM_019413)	-166	NM_019413	19876	Mm.310772	NM_019413	ENSMUSG00000022883	Robo1	AW494633|AW742721|DUTT1|Gm310	roundabout guidance receptor 1	protein-coding	0.035000	0.527363			
ePOU_nocontrol_ChIP_peaks_unique-1611	chr3	79842488	79842688	+	-0.82938	NA	promoter-TSS (NM_027495)	promoter-TSS (NM_027495)	74	NM_027495	70652	Mm.46635	NM_027495	ENSMUSG00000027956	Tmem144	1110057I03Rik|5730537D05Rik	transmembrane protein 144	protein-coding	0.040000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-2146	chr6	116198335	116198535	+	-0.82938	NA	TTS (NR_131013)	TTS (NR_131013)	-5061	NM_177412	330401	Mm.425352	NM_177412	ENSMUSG00000030126	Tmcc1	3632431M01Rik|mKIAA0779	transmembrane and coiled coil domains 1	protein-coding	0.005000	0.462687			44(ATTTGCACCACCAAGG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-195	chr14	119293190	119293390	+	-0.82938	NA	intron (NM_015820, intron 1 of 1)	intron (NM_015820, intron 1 of 1)	155025	NM_015820	50787	Mm.445777	NM_015820	ENSMUSG00000053465	Hs6st3	6OST3|HS6ST-3	heparan sulfate 6-O-sulfotransferase 3	protein-coding	0.005000	0.298507			
ePOU_nocontrol_ChIP_peaks_unique-2204	chr7	34326970	34327170	+	-0.82938	NA	Intergenic	B2_Mm2|SINE|B2	-41461	NM_172741	233103	Mm.491097	NM_172741	ENSMUSG00000066571	4931406P16Rik	AA553327|mKIAA0355	RIKEN cDNA 4931406P16 gene	protein-coding	0.005000	0.388060			-11(ATTTACATAAAATAAA,-,0.00),12(ATCTAAAAAAAAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-878	chr15	58076442	58076642	+	-0.82938	NA	promoter-TSS (NM_001042438)	promoter-TSS (NM_001042438)	-34	NM_001042438	22770	Mm.244931	NM_009572	ENSMUSG00000022361	Zhx1	-	zinc fingers and homeoboxes 1	protein-coding	0.100000	0.711443			
Oct4_nocontrol_ChIP_peaks_unique-483	chr7	113207209	113207409	+	-0.82938	NA	promoter-TSS (NM_001368412)	promoter-TSS (NM_001368412)	-156	NM_007489	11865	Mm.33970	NM_007489	ENSMUSG00000055116	Arntl	Arnt3|BMAL1b|Bmal1|MOP3|bHLHe5|bmal1b'	aryl hydrocarbon receptor nuclear translocator-like	protein-coding	0.070000	0.557214			
ePOU_nocontrol_ChIP_peaks_unique-318	chr10	117575619	117575819	+	-0.82938	NA	Intergenic	Intergenic	-53781	NM_027468	70574	Mm.339332	NM_027468	ENSMUSG00000020183	Cpm	1110060I01Rik|5730456K23Rik|AA589379|E030045M14Rik	carboxypeptidase M	protein-coding	0.015000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-841	chr15	9209709	9209909	+	-0.82938	NA	Intergenic	MLTR25A|LTR|ERVK	-54384	NM_001285980	27401	Mm.35584	NM_013787	ENSMUSG00000054115	Skp2	4930500A04Rik|FBXL1|FWD1|p45	S-phase kinase-associated protein 2 (p45)	protein-coding	0.000000	0.442786			-76(ATTTCCATCACACAGA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-14	chr1	74587440	74587640	+	-0.82938	NA	promoter-TSS (NM_001305652)	promoter-TSS (NM_001305652)	488	NM_001310668	77264	Mm.207298	NM_029888	ENSMUSG00000026135	Zfp142	9330177B18Rik|BB154236|mKIAA0236	zinc finger protein 142	protein-coding	0.050000	0.572139			
ePOU_nocontrol_ChIP_peaks_unique-1762	chr4	55514850	55515050	+	-0.82938	NA	Intergenic	CpG	17525	NM_010637	16600	Mm.4325	NM_010637	ENSMUSG00000003032	Klf4	EZF|Gklf|Zie	Kruppel-like factor 4 (gut)	protein-coding	0.095000	0.676617			
Oct4_nocontrol_ChIP_peaks_unique-8	chr1	52279420	52279620	+	-0.82938	NA	Intergenic	Intergenic	-46288	NM_001113383	14660	Mm.398608	NM_001081081	ENSMUSG00000026103	Gls	6330442B14|AI314027|B230365M23Rik	glutaminase	protein-coding	0.010000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-1739	chr4	33924243	33924443	+	-0.82938	NA	promoter-TSS (NM_007726)	promoter-TSS (NM_007726)	79	NM_001355020	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1A|CB1B|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0.095000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-1533	chr3	9492100	9492300	+	-0.82938	NA	intron (NM_133218, intron 2 of 8)	ORR1C1|LTR|ERVL-MaLR	89180	NR_160691	320088	Mm.212908	NR_015499	ENSMUSG00000097365	C030034L19Rik	A130044O20Rik	RIKEN cDNA C030034L19 gene	ncRNA	0.015000	0.427861			
ePOU_nocontrol_ChIP_peaks_unique-1530	chr3	7465725	7465925	+	-0.82938	NA	Intergenic	Intergenic	-37601	NM_173181	67306	Mm.332366	NM_173181	ENSMUSG00000043542	Zc2hc1a	3110050N22Rik|AI790358|AU023959|Fam164a	zinc finger, C2HC-type containing 1A	protein-coding	0.005000	0.398010			28(TTTTAAAAGAAAAAAA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-916	chr15	83157045	83157245	+	-0.82938	NA	intron (NM_029787, intron 8 of 8)	intron (NM_029787, intron 8 of 8)	7500	NR_004432	104307	Mm.471434	NR_004432	ENSMUSG00000065176	Rnu12	-	RNA U12, small nuclear	snRNA	0.020000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-55	chr1	65186477	65186677	+	-0.82938	NA	promoter-TSS (NM_001310624)	promoter-TSS (NM_001310624)	-98	NM_001111320	15926	Mm.9925	NM_010497	ENSMUSG00000025950	Idh1	AI314845|AI788952|E030024J03Rik|Id-1|Idh-1|Idpc	isocitrate dehydrogenase 1 (NADP+), soluble	protein-coding	0.050000	0.597015			
Oct4_nocontrol_ChIP_peaks_unique-345	chr3	48890832	48891032	+	-0.82938	NA	Intergenic	Intergenic	-281832	NR_003617	66332	Mm.46124	NM_025493		1700018B24Rik	-	enhancer of rudimentary homolog pseudogene	pseudo	0.005000	0.323383		-63(CATGCATATTCATA,+,0.00),-63(CATGCATATTCATA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-113	chr1	135368308	135368508	+	-0.82938	NA	TTS (NM_053106)	TTS (NM_053106)	6655	NM_175259	77552	Mm.41407	NM_175259	ENSMUSG00000041889	Shisa4	9330132O05Rik|Tmem58|mShisa4	shisa family member 4	protein-coding	0.040000	0.572139			
Oct4_nocontrol_ChIP_peaks_unique-223	chr16	20732791	20732991	+	-0.82938	NA	promoter-TSS (NM_001278041)	promoter-TSS (NM_001278041)	-236	NM_001354996	12667	Mm.20457	NM_009893	ENSMUSG00000006958	Chrd	Chd	chordin	protein-coding	0.125000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-1840	chr4	124802212	124802412	+	-0.82938	NA	promoter-TSS (NM_008636)	promoter-TSS (NM_008636)	-237	NM_008636	17764	Mm.272397	NM_008636	ENSMUSG00000028890	Mtf1	MTF-1|Thyls	metal response element binding transcription factor 1	protein-coding	0.085000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-1831	chr4	118015957	118016157	+	-0.82938	NA	intron (NM_001285520, intron 4 of 11)	intron (NM_001285520, intron 4 of 11)	-86294	NM_001284192	11876	Mm.56897	NM_009711	ENSMUSG00000028539	Artn	neublastin	artemin	protein-coding	0.005000	0.472637			
Oct4_nocontrol_ChIP_peaks_unique-503	chr8	47289037	47289237	+	-0.82938	NA	5' UTR (NM_001114311, exon 1 of 4)	5' UTR (NM_001114311, exon 1 of 4)	265	NM_001286376	71069	Mm.23973	NM_175162	ENSMUSG00000038143	Stox2	4933409N07Rik|AI449080|AI835114|mKIAA1392	storkhead box 2	protein-coding	0.160000	0.756219			
ePOU_nocontrol_ChIP_peaks_unique-2121	chr6	95999480	95999680	+	-0.82938	NA	Intergenic	Intergenic	-113574	NM_182808	320265	Mm.489890	NM_182808	ENSMUSG00000059187	Tafa1	C630007B19Rik|FAM19A1 TAFA-1|Fam19a1|Tafa-1	TAFA chemokine like family member 1	protein-coding	0.010000	0.323383			-78(ATCTGAAAAACAAAAT,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-800	chr14	73474937	73475137	+	-0.82938	NA	Intergenic	Intergenic	-35012	NM_026119	67381	Mm.282888	NM_026119	ENSMUSG00000022109	Med4	2410046H15Rik|DRIP36|HSPC126|TRAP36|Vdirp|Vdrip	mediator complex subunit 4	protein-coding	0.020000	0.447761	76(AATGCATTATGCAAA,+,0.00),76(AATGCATTATGCAAA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2484	chr9	13749130	13749330	+	-0.82938	NA	promoter-TSS (NR_024025)	promoter-TSS (NR_024025)	49	NM_023858	77116	Mm.210405	NM_023858	ENSMUSG00000031918	Mtmr2	6030445P13Rik	myotubularin related protein 2	protein-coding	0.140000	0.751244			
ePOU_nocontrol_ChIP_peaks_unique-560	chr12	66117213	66117413	+	-0.82938	NA	Intergenic	Intergenic	167088	NM_001162933	238217	Mm.188575	NM_001162933	ENSMUSG00000060499	Rpl10l	EG238217	ribosomal protein L10-like	protein-coding	0.000000	0.268657			
ePOU_nocontrol_ChIP_peaks_unique-810	chr14	82973026	82973226	+	-0.82938	NA	Intergenic	Intergenic	1102164	NR_153783	102635012	Mm.399509	NR_153783	ENSMUSG00000115043	Gm32455	-	predicted gene, 32455	ncRNA	0.015000	0.353234			-39(CTATAGTCATGCAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-143	chr1	164307475	164307675	+	-0.82938	NA	promoter-TSS (NM_178071)	promoter-TSS (NM_178071)	-88	NM_001357052	66352	Mm.33285	NM_025505	ENSMUSG00000026577	Blzf1	1700030G05Rik|Blzf1l|Golgin-45|Jem-1	basic leucine zipper nuclear factor 1	protein-coding	0.085000	0.611940			
ePOU_nocontrol_ChIP_peaks_unique-2597	chr9	108808341	108808541	+	-0.82938	NA	promoter-TSS (NM_030729)	promoter-TSS (NM_030729)	61	NM_030729	80987	Mm.192416	NM_030729	ENSMUSG00000032598	Nckipsd	AF3P21|DIP1|ORF1|SPIN90|WASLBP|WISH|Wasbp	NCK interacting protein with SH3 domain	protein-coding	0.190000	0.776119			
merged_common-39	chr1	119157329	119157529	+	-0.83138	NA	Intergenic	Intergenic	-103810	NM_001081125	14633	Mm.273292	NM_001081125	ENSMUSG00000048402	Gli2	-	GLI-Kruppel family member GLI2	protein-coding	0.015000	0.447761			-99(CCATTCTTATTCAAAC,+,0.00)
merged_common-789	chr8	61517128	61517328	+	-0.83408	NA	intron (NM_001293772, intron 18 of 21)	intron (NM_001293772, intron 18 of 21)	29494	NM_145595	234309	Mm.29059	NM_145595	ENSMUSG00000031641	Cbr4	A730083J17Rik|BC009118	carbonyl reductase 4	protein-coding	0.000000	0.407960			-14(ATTAGCATCACAATGG,-,0.00)
merged_common-578	chr4	33934742	33934942	+	-0.83408	NA	intron (NM_001365881, intron 1 of 1)	intron (NM_001365881, intron 1 of 1)	8462	NM_001365881	12801	Mm.7992	NM_007726	ENSMUSG00000044288	Cnr1	CB-R|CB1|CB1A|CB1B|CB1R	cannabinoid receptor 1 (brain)	protein-coding	0.005000	0.278607		1(CTTTAATATGCATT,+,0.00)	
merged_common-736	chr7	63957140	63957340	+	-0.85757	NA	Intergenic	Intergenic	-18325	NM_021366	50794	Mm.240473	NM_021366	ENSMUSG00000052040	Klf13	0610043C13Rik|9430029L20Rik|Bteb3|FKLF-2|FKLF2|NSLP1|RFLAT-1|RFLAT1	Kruppel-like factor 13	protein-coding	0.035000	0.567164			6(CTTTTGTCATGCAAAT,+,0.00),63(TTTTTGTGATTCAGAT,+,0.00)
merged_common-608	chr4	117484732	117484932	+	-0.86700	NA	intron (NM_025739, intron 2 of 14)	CpG	12220	NM_025739	66743	Mm.318331	NM_025739	ENSMUSG00000028677	Rnf220	4732477A13|4931406I20Rik|5730503K05Rik|AV302541	ring finger protein 220	protein-coding	0.105000	0.696517			-38(TTCTGCATGACAATTG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-187	chr14	79237973	79238173	+	-0.86700	NA	intron (NM_001033215, intron 1 of 2)	Lx8|LINE|L1	9294	NM_001033215	105590	Mm.486536	NM_001033215	ENSMUSG00000071262	Zfp957	AU017455	zinc finger protein 957	protein-coding	0.020000	0.437811			70(GTTTTGTTTTGTTGAT,+,0.00)
merged_common-598	chr4	87955844	87956044	+	-0.89165	NA	intron (NM_027326, intron 2 of 10)	B3A|SINE|B2	77463	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.000000	0.412935			
merged_common-672	chr5	139252416	139252616	+	-0.89165	NA	promoter-TSS (NM_001163316)	promoter-TSS (NM_001163316)	192	NM_001359238	67604	Mm.270137	NM_026269	ENSMUSG00000025858	Get4	1110007L15Rik|AW412535|Cee	golgi to ER traffic protein 4	protein-coding	0.165000	0.731343			
Oct4_nocontrol_ChIP_peaks_unique-59	chr10	58323936	58324136	+	-0.89165	NA	intron (NM_001359115, intron 1 of 10)	Charlie1|DNA|hAT-Charlie	489	NM_001359115	110829	Mm.57734	NM_026148	ENSMUSG00000019920	Lims1	2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1	LIM and senescent cell antigen-like domains 1	protein-coding	0.035000	0.358209			16(AATTGAATGAAAATAG,-,0.00)
merged_common-532	chr3	57052638	57052838	+	-0.89165	NA	Intergenic	Intergenic	249250	NM_008536	17112	Mm.856	NM_008536	ENSMUSG00000027800	Tm4sf1	L6|M3s1	transmembrane 4 superfamily member 1	protein-coding	0.005000	0.452736			-81(ATTAGCATGAGAATGG,-,0.00)
merged_common-333	chr16	58088556	58088756	+	-0.89165	NA	Intergenic	Intergenic	-319879	NM_028523	73379	Mm.373589	NM_028523	ENSMUSG00000035107	Dcbld2	1700055P21Rik|AW146002|CLCP1|Esdn	discoidin, CUB and LCCL domain containing 2	protein-coding	0.005000	0.313433			
Oct4_nocontrol_ChIP_peaks_unique-414	chr5	29918272	29918472	+	-0.89165	NA	Intergenic	L1_Mur3|LINE|L1	-94742	NM_031168	16193	Mm.1019	NM_031168	ENSMUSG00000025746	Il6	Il-6	interleukin 6	protein-coding	0.000000	0.283582			
merged_common-492	chr2	114145099	114145299	+	-0.89165	NA	intron (NM_001290788, intron 14 of 33)	intron (NM_001290788, intron 14 of 33)	5371	NR_105968	102465982		NR_105968	ENSMUSG00000098464	Mir7002	Gm27429|mmu-mir-7002	microRNA 7002	ncRNA	0.010000	0.333333			
merged_common-651	chr5	92434917	92435117	+	-0.89165	NA	exon (NM_001359995, exon 1 of 13)	exon (NM_001359995, exon 1 of 13)	182	NM_183392	269113	Mm.275289	NM_183392	ENSMUSG00000034826	Nup54	3110079L04Rik|54kDa	nucleoporin 54	protein-coding	0.105000	0.686567			
merged_common-712	chr6	99914581	99914781	+	-0.89165	NA	Intergenic	Intergenic	-188289	NM_001170419	50501	Mm.87365	NM_015768	ENSMUSG00000030069	Prok2	Bv8|PK2|Prok1	prokineticin 2	protein-coding	0.015000	0.447761			
Oct4_nocontrol_ChIP_peaks_unique-101	chr11	106861218	106861418	+	-0.89165	NA	intron (NM_025481, intron 5 of 18)	B1F|SINE|Alu	59397	NM_025481	66313	Mm.340955	NM_025481	ENSMUSG00000018363	Smurf2	2810411E22Rik|AI558114|AI649275	SMAD specific E3 ubiquitin protein ligase 2	protein-coding	0.005000	0.348259			
Oct4_nocontrol_ChIP_peaks_unique-54	chr10	34135838	34136038	+	-0.89165	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-7966	NM_175449	215900	Mm.34479	NM_175449	ENSMUSG00000046031	Calhm6	A630077B13Rik|Fam26f	calcium homeostasis modulator family member 6	protein-coding	0.010000	0.213930			
merged_common-119	chr10	105255865	105256065	+	-0.89165	NA	intron (NM_177368, intron 9 of 11)	intron (NM_177368, intron 9 of 11)	318514	NM_177368	278279	Mm.25225	NM_177368	ENSMUSG00000036019	Tmtc2	8430438D04Rik|D330034A10Rik	transmembrane and tetratricopeptide repeat containing 2	protein-coding	0.005000	0.328358			52(ATTTTGTCATACAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-346	chr3	51341289	51341489	+	-0.89165	NA	promoter-TSS (NM_001291059)	promoter-TSS (NM_001291059)	-745	NM_001291059	69257	Mm.131038	NM_023502	ENSMUSG00000037174	Elf2	2610036A20Rik|A230104O07Rik|AW111824|BB183398|EU32|NERF|NERF-1A|NERF-1B|NERF-2	E74-like factor 2	protein-coding	0.170000	0.805970			
Oct4_nocontrol_ChIP_peaks_unique-449	chr6	112915482	112915682	+	-0.89165	NA	intron (NM_080448, intron 1 of 21)	RLTR17B_Mm|LTR|ERVK	31684	NM_080448	259302	Mm.236401	NM_080448	ENSMUSG00000030257	Srgap3	AI452337|Arhgap14|D130026O08Rik|Gbi|MEGAP|WRP|mKIAA0411	SLIT-ROBO Rho GTPase activating protein 3	protein-coding	0.005000	0.243781			
Oct4_nocontrol_ChIP_peaks_unique-136	chr13	24604773	24604973	+	-0.89165	NA	promoter-TSS (NR_024599)	promoter-TSS (NR_024599)	-106	NR_024599	76024	Mm.440710	NR_024599		Gm11346	5830431A10Rik|AI447617|Gm11347	X-linked lymphocyte-regulated 5 pseudogene	pseudo	0.035000	0.532338			40(CCTTTGTTGTGTTGAT,+,0.00)
merged_common-410	chr18	56015182	56015382	+	-0.89165	NA	Intergenic	(TATATG)n|Simple_repeat|Simple_repeat	-385058	NM_001360917	107022	Mm.24356	NM_026240	ENSMUSG00000001700	Gramd3	9030613F08Rik|9130427A09Rik|AW061306|Gramd2b|NS3TP2	GRAM domain containing 3	protein-coding	0.010000	0.338308		-14(TTTGAATATGTATA,+,0.00),-8(TATGTATATGTATA,+,0.00)	
merged_common-7	chr1	33494766	33494966	+	-0.89165	NA	intron (NM_008922, intron 10 of 13)	intron (NM_008922, intron 10 of 13)	174928	NM_008922	19076	Mm.27705	NM_008922	ENSMUSG00000026134	Prim2	AI323589	DNA primase, p58 subunit	protein-coding	0.005000	0.348259			4(TTATATTCATTTAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-9	chr1	57861916	57862116	+	-0.89165	NA	intron (NM_001368787, intron 4 of 13)	intron (NM_001368787, intron 4 of 13)	16445	NM_001164566	67198	Mm.159989	NM_144882	ENSMUSG00000038305	Spats2l	2810022L02Rik|A230104H11Rik|AA987173|AI480531|AI842453|AW413586	spermatogenesis associated, serine-rich 2-like	protein-coding	0.005000	0.368159			
merged_common-195	chr12	33272807	33273007	+	-0.89165	NA	Intergenic	Intergenic	-29608	NM_001033436	380753	Mm.41540	NM_028139	ENSMUSG00000020564	Atxn7l1	2810423G08Rik|Atxn7l4	ataxin 7-like 1	protein-coding	0.025000	0.393035	-36(CATGCATAATTTATT,+,0.00),-36(CATGCATAATTTATT,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-1029	chr16	80487733	80487933	+	-0.89165	NA	Intergenic	L1_Mur3|LINE|L1	488457	NM_030146	78654		NM_030146		1700066C05Rik	-	RIKEN cDNA 1700066C05 gene	protein-coding	0.005000	0.288557			
merged_common-728	chr7	25047678	25047878	+	-0.89165	NA	intron (NM_001360067, intron 11 of 19)	B3|SINE|B2	24591	NM_008168	14809	Mm.2879	NM_008168	ENSMUSG00000003378	Grik5	GluK5|GluRgamma2|KA2	glutamate receptor, ionotropic, kainate 5 (gamma 2)	protein-coding	0.005000	0.467662			
merged_common-749	chr7	94619045	94619245	+	-0.89165	NA	Intergenic	B4A|SINE|B4	-1434969	NM_001358087	100040298	Mm.260904	NM_001358087		Gm15501	EyeLinc5	predicted pseudogene 15501	protein-coding	0.020000	0.447761		-72(CATACATATGAATG,+,0.00),-72(CATACATATGAATG,-,0.00)	-34(CTATGCATAATAAAGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-124	chr1	150878052	150878252	+	-0.89165	NA	intron (NM_001024720, intron 1 of 106)	intron (NM_001024720, intron 1 of 106)	115283	NM_001024720	545370	Mm.379425	NM_001024720	ENSMUSG00000066842	Hmcn1	EG545370|FIBL-6|Gm201	hemicentin 1	protein-coding	0.005000	0.427861			-57(CTTTGCAAAGGAATGC,-,0.00)
merged_common-825	chr9	44881348	44881548	+	-0.89165	NA	promoter-TSS (NM_001357549)	promoter-TSS (NM_001357549)	-159	NM_001357549	214162	Mm.2389	NM_001081049	ENSMUSG00000002028	Kmt2a	6430520K01|ALL-1|All1|Cxxc7|HRX|HTRX1|Mll|Mll1|mKIAA4050	lysine (K)-specific methyltransferase 2A	protein-coding	0.125000	0.761194			
Oct4_nocontrol_ChIP_peaks_unique-189	chr14	96983409	96983609	+	-0.89165	NA	Intergenic	Intergenic	-464475	NM_053105	93688	Mm.308735	NM_053105	ENSMUSG00000022076	Klhl1	mKIAA1490	kelch-like 1	protein-coding	0.005000	0.353234			-26(GTATTCACATGCACAT,+,0.00),46(TTTTTCTTTTGCTATT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-214	chr10	25372503	25372703	+	-0.89165	NA	intron (NM_001358753, intron 1 of 18)	intron (NM_001358753, intron 1 of 18)	12805	NM_001199265	13822	Mm.306026	NM_013511	ENSMUSG00000019978	Epb41l2	4.1G|AW555191|D10Ertd398e|Epb4.1l2|NBL2	erythrocyte membrane protein band 4.1 like 2	protein-coding	0.020000	0.437811			-10(ATTAACATCAGTAAAG,-,0.00)
merged_common-56	chr1	153014079	153014279	+	-0.89487	NA	intron (NM_175460, intron 1 of 10)	RLTR17B_Mm|LTR|ERVK	59078	NM_175460	226518	Mm.40548	NM_175460	ENSMUSG00000042751	Nmnat2	AI843915|D030041I09Rik|PNAT1|PNAT2	nicotinamide nucleotide adenylyltransferase 2	protein-coding	0.000000	0.373134		26(TATGCATATGTATG,+,0.00),26(TATGCATATGTATG,-,0.00)	
merged_common-445	chr19	56466706	56466906	+	-0.89487	NA	intron (NM_001164263, intron 2 of 12)	intron (NM_001164263, intron 2 of 12)	5169	NM_001164263	226245	Mm.156742	NM_172641	ENSMUSG00000035818	Plekhs1	9930023K05Rik	pleckstrin homology domain containing, family S member 1	protein-coding	0.010000	0.393035			
merged_common-845	chr9	99377059	99377259	+	-0.89487	NA	Intergenic	Intergenic	-18629	NM_177775	272636	Mm.490440	NM_177775	ENSMUSG00000037681	Esyt3	D930024E11|D9Ertd280e|Fam62c|mKIAA4186	extended synaptotagmin-like protein 3	protein-coding	0.005000	0.467662			65(CCTTTGTTATGCTGAT,+,0.00)
merged_common-861	chrX	99431254	99431454	+	-0.89487	NA	intron (NR_033544, intron 6 of 6)	intron (NR_033544, intron 6 of 6)	12443	NR_033544	100038584	Mm.368385	NR_033544	ENSMUSG00000073051	Gm14812	-	predicted gene 14812	ncRNA	0.005000	0.427861		5(CATGATTATGCATG,+,0.00),5(CATGATTATGCATG,-,0.00)	
merged_common-596	chr4	87402334	87402534	+	-0.89487	NA	Intergenic	Intergenic	-171894	NM_172426	76376	Mm.490487	NM_172426	ENSMUSG00000037996	Slc24a2	2810021B17Rik|6330417K15Rik|AI847460|Nckx2	solute carrier family 24 (sodium/potassium/calcium exchanger), member 2	protein-coding	0.020000	0.447761			64(CCTTTATCATGCAGAT,+,0.00)
merged_common-513	chr2	166487244	166487444	+	-0.91148	NA	Intergenic	Intergenic	39893	NR_015558	319684	Mm.399746	NR_015558		5031425F14Rik	-	RIKEN cDNA 5031425F14 gene	ncRNA	0.020000	0.407960			
ePOU_nocontrol_ChIP_peaks_unique-1371	chr2	43902748	43902948	+	-0.96329	NA	intron (NM_001364029, intron 5 of 12)	intron (NM_001364029, intron 5 of 12)	115493	NM_001364029	76117	Mm.217350	NM_153820	ENSMUSG00000049744	Arhgap15	5830480G12Rik	Rho GTPase activating protein 15	protein-coding	0.015000	0.437811			-8(CTATGCAAGACAAGGC,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-482	chr7	109527865	109528065	+	-0.96329	NA	intron (NM_001001326, intron 14 of 19)	intron (NM_001001326, intron 14 of 19)	7833	NR_028079	100302499	Mm.482651	NR_028079	ENSMUSG00000065016	Snora3	MBI-28	small nucleolar RNA, H/ACA box 3	snoRNA	0.000000	0.447761		3(CATGCATATGCATG,+,0.00),3(CATGCATATGCATG,-,0.00)	16(GTCTGCATAACAAAAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1232	chr18	73572182	73572382	+	-0.96329	NA	promoter-TSS (NM_001039214)	promoter-TSS (NM_001039214)	-423	NM_001039214	240396	Mm.24131	NM_001039214	ENSMUSG00000037253	Mex3c	A130001D14Rik|BC035207|BM-013|Rkhd2	mex3 RNA binding family member C	protein-coding	0.110000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-1153	chr17	90546782	90546982	+	-0.96329	NA	intron (NM_001346957, intron 14 of 18)	intron (NM_001346957, intron 14 of 18)	-91002	NM_001346961	18189	Mm.478418	NM_020252	ENSMUSG00000024109	Nrxn1	1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578	neurexin I	protein-coding	0.005000	0.343284			
ePOU_nocontrol_ChIP_peaks_unique-1575	chr3	52580416	52580616	+	-0.96329	NA	Intergenic	MIR3|SINE|MIR	63552	NR_153344	102631981	Mm.394225	NR_153344		Gm30173	-	predicted gene, 30173	ncRNA	0.005000	0.373134			
Oct4_nocontrol_ChIP_peaks_unique-478	chr7	92802361	92802561	+	-0.96329	NA	intron (NM_029494, intron 1 of 4)	intron (NM_029494, intron 1 of 4)	60747	NM_029494	75985	Mm.323004	NM_029494	ENSMUSG00000030643	Rab30	5033421K01Rik|AI323892|Rsb30	RAB30, member RAS oncogene family	protein-coding	0.015000	0.482587			
merged_common-730	chr7	44848880	44849080	+	-0.96329	NA	promoter-TSS (NM_001290694)	promoter-TSS (NM_001290694)	99	NM_001042655	233204	Mm.27567	NM_144924	ENSMUSG00000038520	Tbc1d17	BC017607	TBC1 domain family, member 17	protein-coding	0.040000	0.512438			
ePOU_nocontrol_ChIP_peaks_unique-558	chr12	65073811	65074011	+	-0.96329	NA	promoter-TSS (NM_013902)	promoter-TSS (NM_013902)	27	NM_013902	30795	Mm.28480	NM_013902	ENSMUSG00000020949	Fkbp3	25kDa|FKBP-3|FKBP25	FK506 binding protein 3	protein-coding	0.095000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-686	chr13	74659041	74659241	+	-0.96329	NA	intron (NM_030711, intron 3 of 18)	intron (NM_030711, intron 3 of 18)	19288	NM_030711	80898	Mm.83526	NM_030711	ENSMUSG00000021583	Erap1	A-LAP|ARTS-1|Arts1|ERAAP|PILSA|PILSAP	endoplasmic reticulum aminopeptidase 1	protein-coding	0.000000	0.333333			
Oct4_nocontrol_ChIP_peaks_unique-547	chr9	104102816	104103016	+	-0.96329	NA	intron (NM_145700, intron 1 of 2)	intron (NM_145700, intron 1 of 2)	23727	NM_145700	252837	Mm.269254	NM_145700	ENSMUSG00000079355	Ackr4	A630091E18Rik|CCBP2|CCR11|CCX-CKR|CCX-CKR1|Ccrl1|Cmkbrl1|PPR1|VSHK1	atypical chemokine receptor 4	protein-coding	0.000000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-1935	chr5	64701613	64701813	+	-0.96329	NA	Intergenic	Intergenic	-91014	NR_045078	100042198	Mm.25191	NR_045078	ENSMUSG00000105402	Gm3716	Gm1683	predicted gene 3716	ncRNA	0.020000	0.447761			
ePOU_nocontrol_ChIP_peaks_unique-1477	chr2	137064785	137064985	+	-0.96329	NA	intron (NM_001355670, intron 6 of 7)	intron (NM_001355670, intron 6 of 7)	51635	NM_013822	16449	Mm.22398	NM_013822	ENSMUSG00000027276	Jag1	ABE2|Gsfabe2|Htu|Ozz|Ser-1	jagged 1	protein-coding	0.010000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-1639	chr3	95688327	95688527	+	-0.96329	NA	promoter-TSS (NM_144899)	promoter-TSS (NM_144899)	-510	NM_001301705	229595	Mm.490574	NM_144899	ENSMUSG00000015850	Adamtsl4	ADAMTSL-4|Tsrc1	ADAMTS-like 4	protein-coding	0.005000	0.437811			
merged_common-508	chr2	156459844	156460044	+	-0.96329	NA	intron (NM_001368803, intron 2 of 20)	L1MB2|LINE|L1	-15590	NM_001006664	13821	Mm.20852	NM_013510	ENSMUSG00000027624	Epb41l1	4.1N|Epb4.1l1|NBL1|mKIAA0338	erythrocyte membrane protein band 4.1 like 1	protein-coding	0.005000	0.412935			
ePOU_nocontrol_ChIP_peaks_unique-787	chr14	59837005	59837205	+	-0.96329	NA	intron (NM_015803, intron 26 of 35)	intron (NM_015803, intron 26 of 35)	211824	NM_145463	219134	Mm.275409	NM_145463	ENSMUSG00000044461	Shisa2	9430059P22Rik|MAd2|Tmem46|mShisa|shisa	shisa family member 2	protein-coding	0.015000	0.437811			
merged_common-813	chr8	120589106	120589306	+	-0.96329	NA	promoter-TSS (NM_178856)	promoter-TSS (NM_178856)	-131	NM_178856	272551	Mm.275910	NM_178856	ENSMUSG00000031821	Gins2	2210013I18Rik|4833427B12Rik|AI323585|Pfs2	GINS complex subunit 2 (Psf2 homolog)	protein-coding	0.085000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-493	chr11	119267748	119267948	+	-0.96329	NA	promoter-TSS (NM_008064)	promoter-TSS (NM_008064)	-115	NM_008064	14387	Mm.4793	NM_008064	ENSMUSG00000025579	Gaa	E430018M07Rik	glucosidase, alpha, acid	protein-coding	0.050000	0.512438			
ePOU_nocontrol_ChIP_peaks_unique-1607	chr3	73434390	73434590	+	-0.96329	NA	intron (NR_040547, intron 2 of 7)	intron (NR_040547, intron 2 of 7)	47161	NR_040547	74693	Mm.292227	NR_040547	ENSMUSG00000102362	4930509J09Rik	-	RIKEN cDNA 4930509J09 gene	ncRNA	0.005000	0.402985			52(CTTCTGTAATGTAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1585	chr3	58414408	58414608	+	-0.96329	NA	promoter-TSS (NM_001347233)	promoter-TSS (NM_001347233)	-212	NM_001347233	72033	Mm.218409	NM_001081229	ENSMUSG00000027806	Tsc22d2	1810043J12Rik|5530402M19Rik	TSC22 domain family, member 2	protein-coding	0.035000	0.437811			
Oct4_nocontrol_ChIP_peaks_unique-66	chr10	81430441	81430641	+	-0.96329	NA	Intergenic	CpG	-3368	NM_008688	18029	Mm.426936	NM_008688	ENSMUSG00000055053	Nfic	1110019L22Rik|1500041O16Rik|AA589446|AI746521|NF1-C	nuclear factor I/C	protein-coding	0.135000	0.786070			
Oct4_nocontrol_ChIP_peaks_unique-193	chr14	117457633	117457833	+	-0.96329	NA	intron (NM_001079844, intron 3 of 9)	intron (NM_001079844, intron 3 of 9)	496114	NR_105747	102465148		NR_105747	ENSMUSG00000098648	Mir6239	Gm28025|mmu-mir-6239	microRNA 6239	ncRNA	0.005000	0.338308		-98(CATGCATATGCACA,+,0.00),-98(CATGCATATGCACA,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1505	chr2	154436319	154436519	+	-0.96329	NA	promoter-TSS (NM_009823)	promoter-TSS (NM_009823)	-65	NM_172860	12396	Mm.29914	NM_009823	ENSMUSG00000038533	Cbfa2t2	A430091M07|C330013D05Rik|Cbfa2t2h|MTGR1	CBFA2/RUNX1 translocation partner 2	protein-coding	0.190000	0.820896			
merged_common-791	chr8	71272481	71272681	+	-0.96329	NA	promoter-TSS (NM_001142323)	promoter-TSS (NM_001142323)	9	NM_029621	76478	Mm.27355	NM_029621	ENSMUSG00000035439	Haus8	2410004L22Rik|Hice1	4HAUS augmin-like complex, subunit 8	protein-coding	0.085000	0.631841			
Oct4_nocontrol_ChIP_peaks_unique-366	chr3	122889590	122889790	+	-0.96329	NA	intron (NR_046036, intron 4 of 5)	intron (NR_046036, intron 4 of 5)	-5382	NM_007980	14079	Mm.28398	NM_007980	ENSMUSG00000023057	Fabp2	Fabpi|I-FABP	fatty acid binding protein 2, intestinal	protein-coding	0.000000	0.363184			
Oct4_nocontrol_ChIP_peaks_unique-242	chr17	21527120	21527320	+	-0.96329	NA	TTS (NR_131123)	TTS (NR_131123)	-8319	NM_144515	22710	Mm.296100	NM_144515	ENSMUSG00000051341	Zfp52	KRAB11|Zfp-52|Zfp76|mszf23-2|mszf24|mszf34|mszf75|zfec29	zinc finger protein 52	protein-coding	0.005000	0.303483			
Oct4_nocontrol_ChIP_peaks_unique-393	chr4	109280242	109280442	+	-0.96329	NA	promoter-TSS (NM_007943)	promoter-TSS (NM_007943)	67	NM_007943	13858	Mm.318250	NM_007943	ENSMUSG00000028552	Eps15	2410112D09Rik	epidermal growth factor receptor pathway substrate 15	protein-coding	0.115000	0.741294			
merged_common-628	chr5	5749285	5749485	+	-0.96329	NA	promoter-TSS (NM_027399)	promoter-TSS (NM_027399)	-68	NM_027399	70358	Mm.85429	NM_027399	ENSMUSG00000015652	Steap1	2410007B19Rik|Prss24|Steap	six transmembrane epithelial antigen of the prostate 1	protein-coding	0.120000	0.761194			
ePOU_nocontrol_ChIP_peaks_unique-2084	chr6	52012989	52013189	+	-0.96329	NA	promoter-TSS (NM_018773)	promoter-TSS (NM_018773)	-540	NM_018773	54353	Mm.221479	NM_018773	ENSMUSG00000059182	Skap2	2610021A10Rik|AA960083|BB137539|RA70|SKAP-HOM|Saps|Scap2|mSKAP55R	src family associated phosphoprotein 2	protein-coding	0.040000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-1754	chr4	47399864	47400064	+	-0.96329	NA	intron (NM_001312868, intron 4 of 8)	intron (NM_001312868, intron 4 of 8)	13748	NM_001312869	21812	Mm.197552	NM_009370	ENSMUSG00000007613	Tgfbr1	ALK5|AU017191|Alk-5|ESK2|TGFR-1|TbetaR-I|TbetaRI	transforming growth factor, beta receptor I	protein-coding	0.000000	0.417910			
merged_common-154	chr11	75733296	75733496	+	-0.96329	NA	intron (NM_009536, intron 1 of 5)	CpG	509	NM_009536	22627	Mm.234700	NM_009536	ENSMUSG00000020849	Ywhae	AU019196	tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide	protein-coding	0.100000	0.746269			
ePOU_nocontrol_ChIP_peaks_unique-2494	chr9	21510205	21510405	+	-0.96329	NA	promoter-TSS (NM_001324510)	promoter-TSS (NM_001324510)	-71	NR_136911	17083	Mm.196618	NM_010744	ENSMUSG00000032180	Tmed1	Il1rl1l|Ly84l|St2l	transmembrane p24 trafficking protein 1	protein-coding	0.040000	0.517413			
ePOU_nocontrol_ChIP_peaks_unique-2026	chr6	4553312	4553512	+	-0.96329	NA	Intergenic	Intergenic	-47499	NM_145398	213819	Mm.270703	NM_145398	ENSMUSG00000015189	Casd1	Cas1|Cast1|SOAT	CAS1 domain containing 1	protein-coding	0.000000	0.283582			28(ATATGCATAAAAATCC,-,0.00)
merged_common-748	chr7	90732844	90733044	+	-0.96329	NA	Intergenic	Intergenic	-256949	NM_026734	68472	Mm.289791	NM_026734	ENSMUSG00000030614	Tmem126b	1110001A23Rik	transmembrane protein 126B	protein-coding	0.005000	0.293532		70(CATACATATGCACA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-2012	chr5	139826757	139826957	+	-0.96329	NA	promoter-TSS (NM_025604)	promoter-TSS (NM_025604)	37	NM_025604	66506	Mm.29070	NM_025604	ENSMUSG00000029551	Psmg3	1810042K04Rik|4930403H09Rik|AI303239	proteasome (prosome, macropain) assembly chaperone 3	protein-coding	0.060000	0.601990			
merged_common-95	chr10	38275165	38275365	+	-0.96329	NA	Intergenic	Intergenic	99491	NR_131035	75877	Mm.402094	NR_131035	ENSMUSG00000111234	4930591E09Rik	-	RIKEN cDNA 4930591E09 gene	ncRNA	0.005000	0.323383			
ePOU_nocontrol_ChIP_peaks_unique-636	chr13	19591120	19591320	+	-0.96329	NA	TTS (NM_134065)	TTS (NM_134065)	28610	NM_134065	105298	Mm.275054	NM_134065	ENSMUSG00000002808	Epdr1	AU040950|AV006210|Epdm2|Epdr2|MERP-1|MERP-2|MERP2|Ucc1	ependymin related protein 1 (zebrafish)	protein-coding	0.000000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-1159	chr18	7466821	7467021	+	-0.96329	NA	intron (NM_001081287, intron 3 of 16)	Lx8|LINE|L1	141233	NM_001360860	75739	Mm.133293	NM_001081287	ENSMUSG00000057440	Mpp7	1110068J02Rik|2810038M04Rik|5430426E14Rik|AI415104|Gm955	membrane protein, palmitoylated 7 (MAGUK p55 subfamily member 7)	protein-coding	0.000000	0.398010	-12(CATGAATAATGCATT,+,0.00),-12(CATGAATAATGCATT,-,0.00)		
Oct4_nocontrol_ChIP_peaks_unique-301	chr2	45228009	45228209	+	-0.96329	NA	Intergenic	Intergenic	-110667	NM_001355288	24136	Mm.440702	NM_015753	ENSMUSG00000026872	Zeb2	9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b	zinc finger E-box binding homeobox 2	protein-coding	0.005000	0.328358			-31(AATTTCTCATGTAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2403	chr8	71371596	71371796	+	-0.96329	NA	non-coding (NR_122030, exon 1 of 3)	non-coding (NR_122030, exon 1 of 3)	398	NM_029865	77090	Mm.440170	NM_029865	ENSMUSG00000002396	Ocel1	9430098E02Rik|AI326022|AI593544	occludin/ELL domain containing 1	protein-coding	0.115000	0.711443		-22(TATGCAAATACATG,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-191	chr14	106266880	106267080	+	-0.96329	NA	Intergenic	Intergenic	160782	NR_073203	212085	Mm.78128	NM_198601	ENSMUSG00000022113	Trim52	4921513B05Rik	tripartite motif-containing 52	protein-coding	0.015000	0.378109			
Oct4_nocontrol_ChIP_peaks_unique-548	chr9	108339455	108339655	+	-0.96329	NA	exon (NM_008160, exon 1 of 2)	exon (NM_008160, exon 1 of 2)	475	NM_008160	14775	Mm.1090	NM_008160	ENSMUSG00000063856	Gpx1	AI195024|AL033363|CGPx|GPx-1|GSHPx-1|Gpx	glutathione peroxidase 1	protein-coding	0.065000	0.597015			
ePOU_nocontrol_ChIP_peaks_unique-2308	chr7	126976153	126976353	+	-0.96329	NA	promoter-TSS (NM_001362232)	promoter-TSS (NM_001362232)	339	NM_001347656	52858	Mm.28219	NM_026638	ENSMUSG00000030682	Cdipt	9530042F15Rik|D7Bwg0575e|Pis|Pis1	CDP-diacylglycerol--inositol 3-phosphatidyltransferase (phosphatidylinositol synthase)	protein-coding	0.055000	0.562189			
Oct4_nocontrol_ChIP_peaks_unique-106	chr11	119300180	119300380	+	-0.96329	NA	promoter-TSS (NM_138669)	promoter-TSS (NM_138669)	-237	NM_138669	192170	Mm.197555	NM_138669	ENSMUSG00000025580	Eif4a3	2400003O03Rik|Ddx48|eIF4A-III|mKIAA0111	eukaryotic translation initiation factor 4A3	protein-coding	0.095000	0.671642			
Oct4_nocontrol_ChIP_peaks_unique-233	chr16	69926538	69926738	+	-0.96329	NA	Intergenic	Intergenic	-62894	NM_173069	224318	Mm.212743	NM_173069	ENSMUSG00000063163	Speer2	SPEER-2	spermatogenesis associated glutamate (E)-rich protein 2	protein-coding	0.005000	0.383085			
ePOU_nocontrol_ChIP_peaks_unique-338	chr11	3452298	3452498	+	-0.96329	NA	promoter-TSS (NR_045276)	promoter-TSS (NR_045276)	-39	NR_028317	71523	Mm.72795	NM_027820	ENSMUSG00000034587	8430429K09Rik	-	RIKEN cDNA 8430429K09 gene	ncRNA	0.080000	0.631841			
merged_common-356	chr17	24073175	24073375	+	-0.96329	NA	TTS (NM_011062)	TTS (NM_011062)	210	NM_027008	69259	Mm.28171	NM_027008	ENSMUSG00000016946	Kctd5	2610030N08Rik|mKIAA0176	potassium channel tetramerisation domain containing 5	protein-coding	0.100000	0.706468			
ePOU_nocontrol_ChIP_peaks_unique-2493	chr9	21367609	21367809	+	-0.96329	NA	promoter-TSS (NM_001277321)	promoter-TSS (NM_001277321)	-162	NM_010561	16201	Mm.440026	NM_010561	ENSMUSG00000032178	Ilf3	MBII-26|MPHOSPH4|NF90|NFAR	interleukin enhancer binding factor 3	protein-coding	0.085000	0.562189			
ePOU_nocontrol_ChIP_peaks_unique-1875	chr4	152325697	152325897	+	-0.96329	NA	promoter-TSS (NM_009079)	promoter-TSS (NM_009079)	71	NM_001277114	19934	Mm.307846	NM_009079	ENSMUSG00000028936	Rpl22	2700038K18Rik	ribosomal protein L22	protein-coding	0.080000	0.631841			
merged_common-624	chr4	155086205	155086405	+	-0.96329	NA	promoter-TSS (NM_001362981)	promoter-TSS (NM_001362981)	48	NM_026395	67830	Mm.241604	NM_026395	ENSMUSG00000029048	Rer1	1110060F11Rik|5830454N22Rik|AU043380	retention in endoplasmic reticulum sorting receptor 1	protein-coding	0.125000	0.726368			
merged_common-417	chr18	75210564	75210764	+	-0.96329	NA	intron (NM_027727, intron 14 of 16)	intron (NM_027727, intron 14 of 16)	86653	NR_045394	100503117	Mm.250517	NR_045393	ENSMUSG00000102047	2010010A06Rik	5033420E22Rik	RIKEN cDNA 2010010A06 gene	ncRNA	0.015000	0.432836			30(CATTTGTTTTTCTGAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1007	chr16	45093389	45093589	+	-0.96329	NA	promoter-TSS (NM_026439)	promoter-TSS (NM_026439)	-522	NM_026439	67896	Mm.181074	NM_026439	ENSMUSG00000022665	Ccdc80	2610001E17Rik|DRO1|Ssg1|Urb	coiled-coil domain containing 80	protein-coding	0.015000	0.512438			
ePOU_nocontrol_ChIP_peaks_unique-801	chr14	74913421	74913621	+	-0.96329	NA	intron (NM_001033439, intron 1 of 19)	intron (NM_001033439, intron 1 of 19)	34356	NM_001252132	380916	Mm.288868	NM_001033439	ENSMUSG00000068015	Lrch1	4832412D13Rik|AI552548|AW215503|Chdc1|mKIAA1016	leucine-rich repeats and calponin homology (CH) domain containing 1	protein-coding	0.025000	0.427861			-38(TTTTTTTAATTCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1363	chr2	32381909	32382109	+	-0.96329	NA	promoter-TSS (NM_198001)	promoter-TSS (NM_198001)	-94	NM_198001	73737	Mm.27608	NM_198001	ENSMUSG00000039195	1110008P14Rik	C79326	RIKEN cDNA 1110008P14 gene	protein-coding	0.105000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-735	chr13	111406024	111406224	+	-0.96329	NA	Intergenic	Intergenic	84003	NM_001361926	73274	Mm.57286	NM_028487	ENSMUSG00000032745	Gpbp1	1700034P14Rik|AU019836|D230035M11Rik|Gpbp|mGPBP	GC-rich promoter binding protein 1	protein-coding	0.000000	0.452736	-25(CATGAATATTACATA,-,0.00)		
ePOU_nocontrol_ChIP_peaks_unique-2173	chr6	149585096	149585296	+	-0.96329	NA	exon (NM_001360951, exon 4 of 4)	exon (NM_001360951, exon 4 of 4)	19114	NM_001360951	436100		NM_001360951		Gm21814	6620401J10Rik	predicted gene, 21814	protein-coding	0.005000	0.378109			
merged_common-13	chr1	54659643	54659843	+	-0.96329	NA	intron (NM_001081433, intron 21 of 27)	intron (NM_001081433, intron 21 of 27)	-102059	NM_001163314	241062	Mm.103539	NM_175508	ENSMUSG00000073678	Pgap1	5033403E17Rik|9030223K07Rik|A530084K22|D230012E17Rik|oto	post-GPI attachment to proteins 1	protein-coding	0.005000	0.427861			-12(ATTTGCATGGCAAAAG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-11	chr1	58445316	58445516	+	-0.96329	NA	promoter-TSS (NM_027374)	promoter-TSS (NM_027374)	70	NM_001285826	70225	Mm.340195	NM_027351	ENSMUSG00000026035	Ppil3	2310076N22Rik|2510026K04Rik|Cyp10l	peptidylprolyl isomerase (cyclophilin)-like 3	protein-coding	0.060000	0.601990			
merged_common-72	chr1	180850900	180851100	+	-0.96329	NA	promoter-TSS (NM_145943)	promoter-TSS (NM_145943)	-151	NM_145943	208768	Mm.272625	NM_145943	ENSMUSG00000038806	Sde2	-	SDE2 telomere maintenance homolog (S. pombe)	protein-coding	0.105000	0.711443			
Oct4_nocontrol_ChIP_peaks_unique-554	chrX	21728960	21729160	+	-0.96329	NA	intron (NM_020049, intron 7 of 13)	intron (NM_020049, intron 7 of 13)	14160	NM_020049	56774	Mm.253984	NM_020049	ENSMUSG00000031089	Slc6a14	1110007A17Rik|9030613J17Rik|ATB0plus|CATB0plus	solute carrier family 6 (neurotransmitter transporter), member 14	protein-coding	0.015000	0.318408			
Oct4_nocontrol_ChIP_peaks_unique-264	chr18	61106902	61107102	+	-0.96329	NA	intron (NM_001037859, intron 2 of 21)	intron (NM_001037859, intron 2 of 21)	1430	NM_001037859	12978	Mm.22574	NM_007779	ENSMUSG00000024621	Csf1r	AI323359|CD115|CSF-1R|Csfmr|Fim-2|Fim2|Fms|M-CSF-R|M-CSFR	colony stimulating factor 1 receptor	protein-coding	0.015000	0.487562			12(GTATGCATGAGAAAGC,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-505	chr8	67819546	67819746	+	-0.96329	NA	intron (NM_177698, intron 8 of 14)	intron (NM_177698, intron 8 of 14)	-1351	NM_027626	234353	Mm.32525	NM_027626	ENSMUSG00000030465	Psd3	4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D	pleckstrin and Sec7 domain containing 3	protein-coding	0.005000	0.323383			
Oct4_nocontrol_ChIP_peaks_unique-67	chr10	85185151	85185351	+	-0.96329	NA	promoter-TSS (NM_007771)	promoter-TSS (NM_007771)	-197	NM_007771	12952	Mm.26237	NM_007771	ENSMUSG00000020038	Cry1	AU020726|AU021000|Phll1	cryptochrome 1 (photolyase-like)	protein-coding	0.125000	0.736318			
Oct4_nocontrol_ChIP_peaks_unique-458	chr6	142745932	142746132	+	-0.96329	NA	Intergenic	Intergenic	-10654	NM_009908	12764	Mm.3820	NM_009908	ENSMUSG00000030282	Cmas	AW208911|CMPNeu5Ac|D6Bwg0250e	cytidine monophospho-N-acetylneuraminic acid synthetase	protein-coding	0.010000	0.323383		-12(TCTGCATATTCATT,+,0.00),-12(TCTGCATATTCATT,-,0.00)	-9(GCATATTCATTCAAAG,+,0.00),15(TCATTATAATGGATAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1376	chr2	50553544	50553744	+	-0.96329	NA	Intergenic	Intergenic	198619	NR_154590	102634280		NR_154590		Gm48908	-	predicted gene 48908	ncRNA	0.005000	0.427861			
Oct4_nocontrol_ChIP_peaks_unique-38	chr1	175650112	175650312	+	-0.96329	NA	intron (NM_133809, intron 7 of 14)	RLTR17B_Mm|LTR|ERVK	18019	NM_133809	98256	Mm.27217	NM_133809	ENSMUSG00000039783	Kmo	AI046660	kynurenine 3-monooxygenase (kynurenine 3-hydroxylase)	protein-coding	0.000000	0.313433		-6(CATACATATGCATC,+,0.00),-6(CATACATATGCATC,-,0.00),52(CATACATATGTATA,+,0.00),52(CATACATATGTATA,-,0.00),65(ACTGCATATGTATG,+,0.00),65(ACTGCATATGTATG,-,0.00),77(TGTAAATATGCATG,-,0.00),87(CATGCATATTTATA,+,0.00),87(CATGCATATTTATA,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-534	chr9	72037208	72037408	+	-0.96329	NA	intron (NM_001253862, intron 3 of 19)	intron (NM_001253862, intron 3 of 19)	73893	NM_001253862	21406	Mm.171615	NM_011544	ENSMUSG00000032228	Tcf12	A130037E08Rik|ALF1|HEB|HEBAlt|HTF-4|HTF4|ME1|REB|bHLHb20	transcription factor 12	protein-coding	0.000000	0.378109		-97(ATTGCATATTCATG,+,0.00),-97(ATTGCATATTCATG,-,0.00)	-92(ATATTCATGAGAATGG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1763	chr4	57091437	57091637	+	-0.96329	NA	intron (NM_001355492, intron 2 of 24)	intron (NM_001355492, intron 2 of 24)	51619	NM_001355492	54357	Mm.28217	NM_019427	ENSMUSG00000028434	Epb41l4b	6430543G08Rik|AA589614|AU021054|BB007528|D4Ertd346e|Ehm2|Epb4.1l4b|Lulu2	erythrocyte membrane protein band 4.1 like 4b	protein-coding	0.015000	0.497512			
ePOU_nocontrol_ChIP_peaks_unique-1800	chr4	94764729	94764929	+	-0.96329	NA	intron (NM_001290549, intron 1 of 22)	intron (NM_001290549, intron 1 of 22)	25540	NM_001290551	21687	Mm.14313	NM_013690	ENSMUSG00000006386	Tek	AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2	TEK receptor tyrosine kinase	protein-coding	0.010000	0.388060			-16(TCTCTGTCTTTAAAAT,+,0.00)
merged_common-609	chr4	118409326	118409526	+	-0.96329	NA	promoter-TSS (NM_020000)	promoter-TSS (NM_020000)	89	NM_173719	80509	Mm.259567	NM_020000	ENSMUSG00000006392	Med8	2210021A15Rik|AB041805|ARC32	mediator complex subunit 8	protein-coding	0.090000	0.691542			
merged_common-557	chr3	115695265	115695465	+	-0.96329	NA	Intergenic	Intergenic	19690	NM_007901	13609	Mm.982	NM_007901	ENSMUSG00000045092	S1pr1	AI849002|Edg1|Lpb1|S1p|S1p1	sphingosine-1-phosphate receptor 1	protein-coding	0.005000	0.402985			-77(AATTGCATAAAAATAA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-156	chr13	95190603	95190803	+	-0.96329	NA	intron (NM_001170669, intron 1 of 18)	L1MEf|LINE|L1	32347	NM_001170669	218461	Mm.100167	NM_172263	ENSMUSG00000021684	Pde8b	B230331L10Rik|C030047E14Rik	phosphodiesterase 8B	protein-coding	0.005000	0.373134			9(TTTTCCATGAGAATAG,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1667	chr3	116271194	116271394	+	-0.96329	NA	Intergenic	Intergenic	-17810	NM_022427	64378	Mm.40025	NM_022427	ENSMUSG00000068696	Gpr88	AW061286|Strg	G-protein coupled receptor 88	protein-coding	0.005000	0.348259			
Oct4_nocontrol_ChIP_peaks_unique-519	chr8	104442894	104443094	+	-0.96329	NA	promoter-TSS (NM_001013380)	promoter-TSS (NM_001013380)	53	NM_001013380	234663	Mm.289583	NM_001013380	ENSMUSG00000035770	Dync1li2	AA409702|C920003I06|Dncli2|Dnclic2|LIC2	dynein, cytoplasmic 1 light intermediate chain 2	protein-coding	0.130000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-770	chr14	45529993	45530193	+	-0.96329	NA	promoter-TSS (NM_146054)	promoter-TSS (NM_146054)	-28	NM_001360526	218952	Mm.210018	NM_146054	ENSMUSG00000037712	Fermt2	AA960555|Kindlin-2|Mig2|Plekhc1	fermitin family member 2	protein-coding	0.135000	0.800995			
ePOU_nocontrol_ChIP_peaks_unique-2206	chr7	35647465	35647665	+	-0.96329	NA	promoter-TSS (NM_019746)	promoter-TSS (NM_019746)	-83	NM_019746	56330	Mm.371609	NM_019746	ENSMUSG00000030417	Pdcd5	2200003D22Rik|AA408513|Tfar19	programmed cell death 5	protein-coding	0.090000	0.646766			
ePOU_nocontrol_ChIP_peaks_unique-637	chr13	19642701	19642901	+	-0.96329	NA	Intergenic	RLTR22_Mur|LTR|ERVK	19626	NM_016687	20379	Mm.42095	NM_016687	ENSMUSG00000021319	Sfrp4	-	secreted frizzled-related protein 4	protein-coding	0.005000	0.343284		-53(ATTACATATGCATA,+,0.00),7(TATGCATATGGATC,+,0.00),7(TATGCATATGGATC,-,0.00)	59(ATTTAAAAAAAAATGA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1482	chr2	141042668	141042868	+	-0.96329	NA	intron (NM_001013802, intron 5 of 18)	RMER12B|LTR|ERVK	-371292	NM_001172160	71436	Mm.426781	NM_178382	ENSMUSG00000051379	Flrt3	5530600M07Rik|C430047I10Rik|mKIAA1469	fibronectin leucine rich transmembrane protein 3	protein-coding	0.010000	0.363184			
Oct4_nocontrol_ChIP_peaks_unique-493	chr7	141194141	141194341	+	-0.96329	NA	promoter-TSS (NM_153777)	promoter-TSS (NM_153777)	111	NM_001357825	70552	Mm.45104	NM_153777	ENSMUSG00000038637	Lrrc56	5730427C23Rik|BB110509|mFLJ00101	leucine rich repeat containing 56	protein-coding	0.055000	0.606965			
ePOU_nocontrol_ChIP_peaks_unique-96	chr1	118578228	118578428	+	-0.96329	NA	intron (NM_001359341, intron 32 of 37)	B3A|SINE|B2	-49617	NM_023755	81879	Mm.24621	NM_023755	ENSMUSG00000026380	Tfcp2l1	1810030F05Rik|4932442M07Rik|AA575098|Cp2l1|Crtr-1|D930018N21Rik|LBP-9|Tcfcp2l1	transcription factor CP2-like 1	protein-coding	0.000000	0.398010		1(CATGCATAAGAATA,+,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-855	chr15	33427095	33427295	+	-0.96329	NA	intron (NM_176073, intron 5 of 7)	MTEa-int|LTR|ERVL-MaLR	-21256	NR_033608	73486	Mm.483393	NM_028551	ENSMUSG00000058101	1700084J12Rik	-	ribosomal protein L7-like 1 pseudogene	pseudo	0.000000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-760	chr14	29455388	29455588	+	-0.96329	NA	intron (NM_009785, intron 4 of 37)	intron (NM_009785, intron 4 of 37)	266376	NM_009785	12294	Mm.386754	NM_009785	ENSMUSG00000021991	Cacna2d3	Cacnad3|alapha2delta3	calcium channel, voltage-dependent, alpha2/delta subunit 3	protein-coding	0.005000	0.417910			
Oct4_nocontrol_ChIP_peaks_unique-508	chr8	79224485	79224685	+	-0.96329	NA	intron (NM_026315, intron 2 of 5)	ORR1E-int|LTR|ERVL-MaLR	23998	NM_026315	67687	Mm.178707	NM_026315	ENSMUSG00000031682	1700011L22Rik	-	RIKEN cDNA 1700011L22 gene	protein-coding	0.030000	0.482587			-12(TTCCTGTCATTCTAAT,+,0.00),-6(TCATTCTAATGCAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2532	chr9	59691615	59691815	+	-0.96329	NA	Intergenic	Intergenic	-15922	NM_001357686	546134	Mm.297580	NM_001033498	ENSMUSG00000074259	Gramd2	BC064463|Gramd2a	GRAM domain containing 2	protein-coding	0.035000	0.661692			
ePOU_nocontrol_ChIP_peaks_unique-629	chr13	11337636	11337836	+	-0.96329	NA	Intergenic	RLTR17B_Mm|LTR|ERVK	-184316	NR_027813	664793	Mm.410565	NR_027813	ENSMUSG00000113593	Zp4-ps	EG664793|Zp4|Zpb	zona pellucida glycoprotein 4, pseudogene	pseudo	0.000000	0.308458		-38(TATACATATGTATA,+,0.00),-38(TATACATATGTATA,-,0.00),39(TATGCATATGTATA,+,0.00),39(TATGCATATGTATA,-,0.00)	
merged_common-643	chr5	75085263	75085463	+	-0.96329	NA	Intergenic	Intergenic	9762	NM_133256	14843	Mm.218752	NM_133256	ENSMUSG00000035946	Gsx2	Gsh-2|Gsh2	GS homeobox 2	protein-coding	0.010000	0.432836			-3(CTCTGCATGACAAAGC,-,0.00)
merged_common-844	chr9	98986297	98986497	+	-0.96329	NA	promoter-TSS (NM_011810)	promoter-TSS (NM_011810)	24	NM_001122851	23873	Mm.74605	NM_011810	ENSMUSG00000032463	Faim	-	Fas apoptotic inhibitory molecule	protein-coding	0.125000	0.711443			
ePOU_nocontrol_ChIP_peaks_unique-140	chr1	160508633	160508833	+	-0.96329	NA	intron (NM_013862, intron 13 of 20)	intron (NM_013862, intron 13 of 20)	70971	NM_001368668	620246		NM_001146330		Gpr52	EG620246	G protein-coupled receptor 52	protein-coding	0.005000	0.358209			
ePOU_nocontrol_ChIP_peaks_unique-320	chr10	119112080	119112280	+	-0.96329	NA	Intergenic	B3|SINE|B2	19275	NR_045348	73400	Mm.416864	NR_045348	ENSMUSG00000100681	1700064J06Rik	-	RIKEN cDNA 1700064J06 gene	ncRNA	0.005000	0.402985			
Oct4_nocontrol_ChIP_peaks_unique-314	chr2	112932004	112932204	+	-0.96329	NA	intron (NM_001319156, intron 10 of 103)	intron (NM_001319156, intron 10 of 103)	284979	NM_001319156	20192	Mm.436657	NM_177652	ENSMUSG00000057378	Ryr3	AI851294|C230090H21|RYR-3	ryanodine receptor 3	protein-coding	0.005000	0.363184			
ePOU_nocontrol_ChIP_peaks_unique-1752	chr4	46863034	46863234	+	-0.96329	NA	intron (NM_001081141, intron 2 of 18)	intron (NM_001081141, intron 2 of 18)	128580	NM_001081141	242425	Mm.101909	NM_001081141	ENSMUSG00000039809	Gabbr2	GABABR2|Gb2|Gm425|Gpr51	gamma-aminobutyric acid (GABA) B receptor, 2	protein-coding	0.020000	0.507463			
ePOU_nocontrol_ChIP_peaks_unique-1068	chr17	24134079	24134279	+	-0.96329	NA	intron (NM_001286662, intron 1 of 13)	GA-rich|Low_complexity|Low_complexity	7415	NM_011062	18607	Mm.10504	NM_011062	ENSMUSG00000024122	Pdpk1	Pdk1	3-phosphoinositide dependent protein kinase 1	protein-coding	0.000000	0.407960			49(TGCTTGTCATGCAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-591	chr12	91849333	91849533	+	-0.96329	NA	promoter-TSS (NM_011344)	promoter-TSS (NM_011344)	-276	NM_011344	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.040000	0.532338			
Oct4_nocontrol_ChIP_peaks_unique-336	chr3	4756682	4756882	+	-0.96329	NA	Intergenic	Intergenic	-41926	NR_045272	100503859	Mm.75172	NR_045272	ENSMUSG00000098659	1110015O18Rik	-	RIKEN cDNA 1110015O18 gene	ncRNA	0.000000	0.283582			
ePOU_nocontrol_ChIP_peaks_unique-702	chr13	93895251	93895451	+	-0.96329	NA	intron (NM_009712, intron 6 of 7)	intron (NM_009712, intron 6 of 7)	104574	NR_049198	100885837		NR_049198	ENSMUSG00000093480	Mir5624	Gm25075|mir-5624|mmu-mir-5624	microRNA 5624	ncRNA	0.000000	0.288557			
Oct4_nocontrol_ChIP_peaks_unique-448	chr6	106352388	106352588	+	-0.96329	NA	intron (NM_001109749, intron 6 of 25)	intron (NM_001109749, intron 6 of 25)	233546	NM_001364565	269784	Mm.321683	NM_173004	ENSMUSG00000064293	Cntn4	9630050B05|Axcam|BIG-2	contactin 4	protein-coding	0.010000	0.422886			
ePOU_nocontrol_ChIP_peaks_unique-1797	chr4	93334980	93335180	+	-0.96329	NA	exon (NM_026954, exon 1 of 1)	exon (NM_026954, exon 1 of 1)	431	NM_026954	69136	Mm.171558	NM_026954	ENSMUSG00000054000	Tusc1	2200001D17Rik|TSG-9	tumor suppressor candidate 1	protein-coding	0.140000	0.756219			
merged_common-441	chr19	50097330	50097530	+	-0.96329	NA	Intergenic	Intergenic	581216	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.005000	0.323383			-2(TCTTTGTGATGCAGAT,+,0.00),26(GTTTATTCATTCATAT,+,0.00)
merged_common-178	chr11	109932400	109932600	+	-0.96329	NA	3' UTR (NM_013851, exon 39 of 39)	3' UTR (NM_013851, exon 39 of 39)	63345	NM_001362749	27404	Mm.341004	NM_013851	ENSMUSG00000020620	Abca8b	Abca8	ATP-binding cassette, sub-family A (ABC1), member 8b	protein-coding	0.000000	0.338308		-79(CATGAATATTTATA,+,0.00),-79(CATGAATATTTATA,-,0.00),9(CTTACATATGCATT,+,0.00)	
merged_common-452	chr2	18392607	18392807	+	-0.96329	NA	5' UTR (NM_001190817, exon 1 of 13)	5' UTR (NM_001190817, exon 1 of 13)	123	NM_007869	13418	Mm.246674	NM_007869	ENSMUSG00000026740	Dnajc1	4733401K02Rik|AA960110|D230036H06Rik|Dnajl1|ERdj1|ERj1p|MTJ1	DnaJ heat shock protein family (Hsp40) member C1	protein-coding	0.100000	0.731343			
ePOU_nocontrol_ChIP_peaks_unique-1717	chr3	159479594	159479794	+	-0.96329	NA	Intergenic	RLTR22_Mur|LTR|ERVK	-15739	NM_001172093	76131	Mm.371655	NM_029523	ENSMUSG00000028175	Depdc1a	5830484J08Rik|Depdc1	DEP domain containing 1a	protein-coding	0.010000	0.343284			20(ATCTACACAATAAAGA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-357	chr3	94582498	94582698	+	-0.96329	NA	5' UTR (NM_001082484, exon 1 of 12)	5' UTR (NM_001082484, exon 1 of 12)	118	NM_001082484	76742	Mm.28160	NM_029721	ENSMUSG00000028136	Snx27	5730552M22Rik|ESTM45|ESTM47|R75405	sorting nexin family member 27	protein-coding	0.150000	0.766169			
Oct4_nocontrol_ChIP_peaks_unique-426	chr5	134465464	134465664	+	-0.96329	NA	Intergenic	(TA)n|Simple_repeat|Simple_repeat	-8848	NM_001347488	57080	Mm.332735	NM_020331	ENSMUSG00000023079	Gtf2ird1	1700012P16Rik|BEN|Cream1|ESTM9|GTF3|Gtf2il|MusTRD1|Tg(Alb1-Myc)166.8Sst|WBSCR11|X83320	general transcription factor II I repeat domain-containing 1	protein-coding	0.000000	0.288557			
merged_common-446	chr19	57610837	57611037	+	-0.96329	NA	promoter-TSS (NM_181415)	promoter-TSS (NM_181415)	-97	NM_181415	226255	Mm.245340	NM_181415	ENSMUSG00000054843	Atrnl1	AI504415|AW555641|Alp|Atrnl|Atrnlp	attractin like 1	protein-coding	0.140000	0.786070			
merged_common-93	chr10	36935967	36936167	+	-0.96329	NA	Intergenic	MLTR18B_MM|LTR|ERVK	-38477	NM_008229	15182	Mm.19806	NM_008229	ENSMUSG00000019777	Hdac2	D10Wsu179e|YAF1|Yy1bp|mRPD3	histone deacetylase 2	protein-coding	0.025000	0.407960			-23(ATTATCACGACAAAGC,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-456	chr6	136803893	136804093	+	-0.96329	NA	TTS (NM_175652)	TTS (NM_175652)	438	NM_175652	320332	Mm.246720	NM_175652	ENSMUSG00000096010	Hist4h4	B130044J01Rik	histone cluster 4, H4	protein-coding	0.035000	0.512438			
merged_common-528	chr3	51483960	51484160	+	-0.96329	NA	promoter-TSS (NM_016858)	promoter-TSS (NM_016858)	94	NM_016858	19338	Mm.1664	NM_016858	ENSMUSG00000027739	Rab33b	-	RAB33B, member RAS oncogene family	protein-coding	0.115000	0.716418			
Oct4_nocontrol_ChIP_peaks_unique-213	chr15	79774391	79774591	+	-0.96329	NA	promoter-TSS (NM_017470)	promoter-TSS (NM_017470)	-24	NM_017470	54152	Mm.288159	NM_017470	ENSMUSG00000022420	Dnal4	D15Ertd424e|Dnalc4	dynein, axonemal, light chain 4	protein-coding	0.070000	0.582090			
ePOU_nocontrol_ChIP_peaks_unique-530	chr12	38778452	38778652	+	-0.96329	NA	Intergenic	Intergenic	-1530	NM_001347379	14009	Mm.4866	NM_007960	ENSMUSG00000004151	Etv1	ER81|Etsrp81	ets variant 1	protein-coding	0.035000	0.522388			-30(CCTTTGTTATGTATTT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-467	chr7	49837485	49837685	+	-0.96329	NA	intron (NM_133740, intron 13 of 15)	L4_C_Mam|LINE|RTE-X	59227	NM_133740	71974	Mm.33202	NM_133740	ENSMUSG00000030505	Prmt3	2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3	protein arginine N-methyltransferase 3	protein-coding	0.010000	0.467662			
ePOU_nocontrol_ChIP_peaks_unique-1214	chr18	61726305	61726505	+	-0.96329	NA	promoter-TSS (NM_021296)	promoter-TSS (NM_021296)	15	NR_029432	68982	Mm.441992	NR_029432	ENSMUSG00000098702	1500015A07Rik	-	RIKEN cDNA 1500015A07 gene	ncRNA	0.090000	0.621891			
Oct4_nocontrol_ChIP_peaks_unique-196	chr14	122534062	122534262	+	-0.96329	NA	promoter-TSS (NM_144844)	promoter-TSS (NM_144844)	-166	NM_144844	110821	Mm.23876	NM_144844	ENSMUSG00000041650	Pcca	C79630	propionyl-Coenzyme A carboxylase, alpha polypeptide	protein-coding	0.065000	0.621891			
ePOU_nocontrol_ChIP_peaks_unique-1707	chr3	151784975	151785175	+	-0.96329	NA	Intergenic	Intergenic	-22184	NM_031367	15061	Mm.219544	NM_031367	ENSMUSG00000039146	Ifi44l	H-28|H28|H28-1|NS1178	interferon-induced protein 44 like	protein-coding	0.005000	0.398010			-82(ATTTTGACATGTAAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1671	chr3	116712073	116712273	+	-0.96329	NA	5' UTR (NM_144902, exon 1 of 8)	5' UTR (NM_144902, exon 1 of 8)	107	NM_144902	229782	Mm.190758	NM_144902	ENSMUSG00000027957	Slc35a3	2310050P13Rik	solute carrier family 35 (UDP-N-acetylglucosamine (UDP-GlcNAc) transporter), member 3	protein-coding	0.160000	0.791045			
ePOU_nocontrol_ChIP_peaks_unique-1712	chr3	156379043	156379243	+	-0.96329	NA	Intergenic	MLT1E2|LTR|ERVL-MaLR	182544	NR_040398	329782	Mm.183459	NR_040398	ENSMUSG00000085084	4930570G19Rik	C630015G22	RIKEN cDNA 4930570G19 gene	ncRNA	0.005000	0.407960			
merged_common-225	chr13	24564702	24564902	+	-0.96329	NA	Intergenic	Intergenic	-17387	NM_001286100	193385	Mm.217319	NM_029679	ENSMUSG00000036006	Ripor2	Fam65b	RHO family interacting cell polarization regulator 2	protein-coding	0.020000	0.487562			
ePOU_nocontrol_ChIP_peaks_unique-1547	chr3	25031007	25031207	+	-0.96329	NA	Intergenic	Intergenic	-247101	NM_001326288	635702	Mm.448351	NM_001326288	ENSMUSG00000102758	Naaladl2	2810043G22Rik|EG635702|Gm1021	N-acetylated alpha-linked acidic dipeptidase-like 2	protein-coding	0.000000	0.288557			16(ATTTAAAATATAATGA,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-430	chr6	13676104	13676304	+	-0.96329	NA	intron (NM_175312, intron 1 of 4)	intron (NM_175312, intron 1 of 4)	1762	NM_175312	101148	Mm.354863	NM_175312	ENSMUSG00000042742	Bmt2	AI666701|B630005N14Rik	base methyltransferase of 25S rRNA 2	protein-coding	0.005000	0.283582			-38(AAATGAATAACAATGA,-,0.00),23(TCATTTTCTTTTAAAA,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-177	chr14	52120691	52120891	+	-0.96329	NA	intron (NM_001168515, intron 5 of 24)	PB1D9|SINE|Alu	9888	NM_023879	77945	Mm.21662	NM_023879	ENSMUSG00000057132	Rpgrip1	0610005A07Rik|4930401L23Rik|4930505G06Rik|A930002K18Rik|AA415034|nmf247	retinitis pigmentosa GTPase regulator interacting protein 1	protein-coding	0.005000	0.368159		23(TATTCATATTTATA,+,0.00)	62(CTTTGAATGATAAATA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-826	chr14	116553303	116553503	+	-0.96329	NA	Intergenic	Intergenic	-371894	NM_001079844	23888	Mm.440025	NM_011821	ENSMUSG00000058571	Gpc6	-	glypican 6	protein-coding	0.015000	0.407960			
Oct4_nocontrol_ChIP_peaks_unique-246	chr17	56831022	56831222	+	-0.96329	NA	promoter-TSS (NM_009056)	promoter-TSS (NM_009056)	-114	NM_027787	19725	Mm.102	NM_009056	ENSMUSG00000024206	Rfx2	5430432H19Rik	regulatory factor X, 2 (influences HLA class II expression)	protein-coding	0.140000	0.781095			
Oct4_nocontrol_ChIP_peaks_unique-513	chr8	84192515	84192715	+	-0.96329	NA	Intergenic	Intergenic	-13654	NR_029821	723819		NR_029821	ENSMUSG00000065483	Mir181c	Mirn181c|mir-181c	microRNA 181c	ncRNA	0.050000	0.606965			-18(TTTTACTAATGTAAAT,+,0.00)
merged_common-558	chr3	118404276	118404476	+	-0.96329	NA	Intergenic	Intergenic	-29481	NR_029551	387155		NR_029551	ENSMUSG00000065569	Mir137	Mirn137|mir-137|mmu-mir-137	microRNA 137	ncRNA	0.000000	0.298507		0(TATGCATATTCATA,+,0.00),0(TATGCATATTCATA,-,0.00)	-18(TCATTTTTATGTAAAC,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-275	chr19	23829194	23829394	+	-0.96329	NA	intron (NM_177034, intron 1 of 12)	intron (NM_177034, intron 1 of 12)	70418	NM_177034	319924	Mm.22879	NM_177034	ENSMUSG00000024897	Apba1	6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha	amyloid beta (A4) precursor protein binding, family A, member 1	protein-coding	0.000000	0.328358			
ePOU_nocontrol_ChIP_peaks_unique-2593	chr9	106892027	106892227	+	-0.96329	NA	promoter-TSS (NM_029103)	promoter-TSS (NM_029103)	-189	NM_029103	74840	Mm.29778	NM_029103	ENSMUSG00000032575	Manf	3230402M22Rik|AA407711|AA408789|AA673178|Armet|D17914|D18Mgi17	mesencephalic astrocyte-derived neurotrophic factor	protein-coding	0.050000	0.631841			
Oct4_nocontrol_ChIP_peaks_unique-475	chr7	73503059	73503259	+	-0.96329	NA	intron (NM_001081345, intron 8 of 38)	ID_B1|SINE|B4	38587	NM_001081345	244059	Mm.34539	NM_001081345	ENSMUSG00000078671	Chd2	2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2	chromodomain helicase DNA binding protein 2	protein-coding	0.000000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-2393	chr8	66522898	66523098	+	-0.96329	NA	Intergenic	L1VL2|LINE|L1	11258	NM_028927	74419	Mm.159193	NM_028927	ENSMUSG00000025519	Tktl2	4933401I19Rik	transketolase-like 2	protein-coding	0.005000	0.437811			
ePOU_nocontrol_ChIP_peaks_unique-2533	chr9	60407371	60407571	+	-0.96329	NA	intron (NM_001040426, intron 4 of 17)	intron (NM_001040426, intron 4 of 17)	103564	NM_001040426	207596	Mm.28791	NM_172444	ENSMUSG00000032289	Thsd4	ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik	thrombospondin, type I, domain containing 4	protein-coding	0.000000	0.512438			57(CTTTGCATAAAAGAAC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1708	chr3	153598555	153598755	+	-0.96329	NA	intron (NM_011372, intron 1 of 4)	MLT1H|LTR|ERVL-MaLR	126478	NM_011372	20447	Mm.296453	NM_011372	ENSMUSG00000052544	St6galnac3	Siat7c	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3	protein-coding	0.005000	0.353234			
Oct4_nocontrol_ChIP_peaks_unique-15	chr1	83794570	83794770	+	-0.96329	NA	Intergenic	Intergenic	-386470	NM_001356547	77629	Mm.154303	NM_172430	ENSMUSG00000026163	Sphkap	4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678	SPHK1 interactor, AKAP domain containing	protein-coding	0.000000	0.432836		-49(TATGCATATGCACA,+,0.00),-49(TATGCATATGCACA,-,0.00)	
Oct4_nocontrol_ChIP_peaks_unique-113	chr12	31303603	31303803	+	-0.96329	NA	intron (NM_008482, intron 19 of 32)	intron (NM_008482, intron 19 of 32)	38410	NM_008482	16777	Mm.172674	NM_008482	ENSMUSG00000002900	Lamb1	C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1	laminin B1	protein-coding	0.010000	0.402985			-69(GCTTTGTTATTGAAAA,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-48	chr10	19283075	19283275	+	-0.96329	NA	Intergenic	Intergenic	-73364	NM_053008	94222	Mm.156946	NM_053008	ENSMUSG00000045591	Olig3	Bhlhb7|bHLHe20|oligo3	oligodendrocyte transcription factor 3	protein-coding	0.000000	0.388060			
ePOU_nocontrol_ChIP_peaks_unique-850	chr15	23416513	23416713	+	-0.96329	NA	intron (NM_001081299, intron 8 of 11)	intron (NM_001081299, intron 8 of 11)	380150	NM_001081299	320865	Mm.241965	NM_001081299	ENSMUSG00000040420	Cdh18	B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol	cadherin 18	protein-coding	0.015000	0.303483			
ePOU_nocontrol_ChIP_peaks_unique-1631	chr3	89308137	89308337	+	-0.96329	NA	Intergenic	Intergenic	14642	NM_010108	13638	Mm.331159	NM_010108	ENSMUSG00000028039	Efna3	AW494418|EFL-2|Ehk1-L|Epl3|LERK-3	ephrin A3	protein-coding	0.010000	0.527363			
Oct4_nocontrol_ChIP_peaks_unique-549	chr9	108566915	108567115	+	-0.96329	NA	5' UTR (NM_023247, exon 1 of 5)	5' UTR (NM_023247, exon 1 of 5)	421	NM_023247	66706	Mm.29471	NM_023247	ENSMUSG00000070283	Ndufaf3	4733401H18Rik	NADH:ubiquinone oxidoreductase complex assembly factor 3	protein-coding	0.080000	0.651741			
merged_common-82	chr10	7662865	7663065	+	-0.96329	NA	promoter-TSS (NR_030698)	promoter-TSS (NR_030698)	-406	NR_030698	320642	Mm.398806	NR_030698		A630066F11Rik	-	RIKEN cDNA A630066F11 gene	ncRNA	0.105000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-553	chr12	59011932	59012132	+	-0.96329	NA	promoter-TSS (NM_009147)	promoter-TSS (NM_009147)	-15	NM_001361956	20334	Mm.491137	NM_009147	ENSMUSG00000020986	Sec23a	Msec23|Sec23r	SEC23 homolog A, COPII coat complex component	protein-coding	0.090000	0.696517			
ePOU_nocontrol_ChIP_peaks_unique-1963	chr5	101825310	101825510	+	-0.96329	NA	Intergenic	L1M5|LINE|L1	60280	NM_173370	74596	Mm.46764	NM_173370	ENSMUSG00000029330	Cds1	4833409J18Rik|AI314024|AW125888	CDP-diacylglycerol synthase 1	protein-coding	0.030000	0.492537			
ePOU_nocontrol_ChIP_peaks_unique-807	chr14	78747637	78747837	+	-0.96329	NA	Intergenic	Intergenic	-15008	NM_001081336	380921	Mm.89591	NM_001081336	ENSMUSG00000034731	Dgkh	5930402B05Rik|D130015C16|DGK	diacylglycerol kinase, eta	protein-coding	0.005000	0.358209		-33(AATGAATGTGCATA,+,0.00)	-28(ATGTGCATACCAAATG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-126	chr12	92624052	92624252	+	-0.96329	NA	Intergenic	Intergenic	-774995	NM_011344	20338	Mm.250605	NM_011344	ENSMUSG00000020964	Sel1l	AW493766|Sel1h|mKIAA4137	sel-1 suppressor of lin-12-like (C. elegans)	protein-coding	0.000000	0.378109			-89(CCATTGTCATGTAAAT,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-132	chr12	118301954	118302154	+	-0.96329	NA	promoter-TSS (NM_001166385)	promoter-TSS (NM_001166385)	-614	NM_001166385	20688	Mm.34699	NM_009239	ENSMUSG00000025323	Sp4	5730497N03Rik|HF-1b|HF1-b	trans-acting transcription factor 4	protein-coding	0.100000	0.651741			
ePOU_nocontrol_ChIP_peaks_unique-1335	chr2	14903323	14903523	+	-0.96329	NA	intron (NM_001309519, intron 2 of 12)	intron (NM_001309519, intron 2 of 12)	29767	NM_001309519	12296	Mm.313930	NM_023116	ENSMUSG00000057914	Cacnb2	AW060387|CAB2|Cavbeta2|Cchb2	calcium channel, voltage-dependent, beta 2 subunit	protein-coding	0.000000	0.378109			-45(TGTTTGTCATGTTAAA,+,0.00)
Oct4_nocontrol_ChIP_peaks_unique-111	chr12	15562268	15562468	+	-0.96329	NA	Intergenic	Intergenic	238733	NR_105809	102465204		NR_105809	ENSMUSG00000098480	Mir6387	Gm27281|mmu-mir-6387	microRNA 6387	ncRNA	0.000000	0.368159			
Oct4_nocontrol_ChIP_peaks_unique-44	chr10	9803177	9803377	+	-0.96329	NA	intron (NM_001081344, intron 16 of 25)	MLTR11A|LTR|ERVK	97763	NM_001081344	78808	Mm.331751	NM_030191	ENSMUSG00000019790	Stxbp5	0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006	syntaxin binding protein 5 (tomosyn)	protein-coding	0.010000	0.482587			44(ATTTATTTATGCAAAG,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2628	chrX	42441311	42441511	+	-0.96329	NA	Intergenic	L1M4|LINE|L1	-61154	NM_001313689	20400	Mm.441197	NM_011364	ENSMUSG00000005696	Sh2d1a	Gm686|SAP	SH2 domain containing 1A	protein-coding	0.005000	0.313433			
ePOU_nocontrol_ChIP_peaks_unique-1304	chr19	43879641	43879841	+	-0.96329	NA	promoter-TSS (NM_001306088)	promoter-TSS (NM_001306088)	27	NM_001306088	71972	Mm.159024	NM_028029	ENSMUSG00000025195	Dnmbp	2410003L07Rik|2410003M15Rik|TUBA	dynamin binding protein	protein-coding	0.075000	0.666667			
ePOU_nocontrol_ChIP_peaks_unique-719	chr13	100833519	100833719	+	-0.96329	NA	promoter-TSS (NM_022885)	promoter-TSS (NM_022885)	-192	NM_022885	69048	Mm.402215	NM_022885	ENSMUSG00000021629	Slc30a5	1810010K08Rik|AF233321|ZNT5|ZTL1|ZnT-5|Zntl1	solute carrier family 30 (zinc transporter), member 5	protein-coding	0.045000	0.537313			
ePOU_nocontrol_ChIP_peaks_unique-1357	chr2	30049267	30049467	+	-0.96329	NA	promoter-TSS (NM_001008498)	promoter-TSS (NM_001008498)	-488	NM_001008498	71820	Mm.88053	NM_001008498	ENSMUSG00000039715	Wdr34	3200002I06Rik	WD repeat domain 34	protein-coding	0.020000	0.358209			4(ATTTACATAAACAATA,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2382	chr8	48535451	48535651	+	-0.96329	NA	intron (NM_011857, intron 2 of 28)	intron (NM_011857, intron 2 of 28)	139139	NM_001145937	23965	Mm.42191	NM_011857	ENSMUSG00000031561	Tenm3	2610100B16Rik|Odz1|Odz3|Ten-m3|mKIAA1455	teneurin transmembrane protein 3	protein-coding	0.010000	0.398010			
ePOU_nocontrol_ChIP_peaks_unique-1567	chr3	40716305	40716505	+	-0.96329	NA	intron (NM_178386, intron 1 of 5)	intron (NM_178386, intron 1 of 5)	7534	NM_178386	73333	Mm.78691	NM_178386	ENSMUSG00000069041	Slc25a31	1700034J06Rik|Ant4|Sfec	solute carrier family 25 (mitochondrial carrier; adenine nucleotide translocator), member 31	protein-coding	0.005000	0.318408	81(AATGCAAAATTTATG,+,0.00),81(AATGCAAAATTTATG,-,0.00)		-53(TATTTGTTTAGCTAAT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-275	chr10	81545250	81545450	+	-0.96329	NA	promoter-TSS (NM_010301)	promoter-TSS (NM_010301)	-188	NM_010301	14672	Mm.260925	NM_010301	ENSMUSG00000034781	Gna11	Dsk7|E430025L19|g alpha-11	guanine nucleotide binding protein, alpha 11	protein-coding	0.155000	0.721393			
ePOU_nocontrol_ChIP_peaks_unique-2441	chr8	94280346	94280546	+	-0.96329	NA	intron (NM_001357268, intron 1 of 20)	intron (NM_001357268, intron 1 of 20)	11840	NM_001357268	71805	Mm.458170	NM_172410	ENSMUSG00000032939	Nup93	2410008G02Rik	nucleoporin 93	protein-coding	0.005000	0.323383			
ePOU_nocontrol_ChIP_peaks_unique-1253	chr19	4810354	4810554	+	-0.96329	NA	intron (NM_019869, intron 1 of 2)	intron (NM_019869, intron 1 of 2)	1145	NR_157185	102902673	Mm.426069	NM_001290127	ENSMUSG00000096370	Gm21992	Rbm14-rbm4	predicted gene 21992	protein-coding	0.020000	0.452736			-6(CCTTTCACATGCAAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-2138	chr6	113306681	113306881	+	-0.96329	NA	promoter-TSS (NM_001282128)	promoter-TSS (NM_001282128)	-356	NM_001282128	78783	Mm.356059	NM_030178	ENSMUSG00000001632	Brpf1	4833438B11Rik|4930540D11Rik|Brpf2	bromodomain and PHD finger containing, 1	protein-coding	0.105000	0.726368			
Oct4_nocontrol_ChIP_peaks_unique-288	chr19	55566439	55566639	+	-0.96329	NA	intron (NM_001360431, intron 8 of 8)	intron (NM_001360431, intron 8 of 8)	135665	NR_045318	77594	Mm.329924	NR_045318	ENSMUSG00000097632	4930552P12Rik	-	RIKEN cDNA 4930552P12 gene	ncRNA	0.040000	0.457711			
ePOU_nocontrol_ChIP_peaks_unique-2446	chr8	95697075	95697275	+	-0.96329	NA	Intergenic	Intergenic	-5862	NM_001195006	234593	Mm.29846	NM_145602	ENSMUSG00000036564	Ndrg4	D8Bwg1337e|Ndr1-rs|Ndr4|R74996|SMAP-8	N-myc downstream regulated gene 4	protein-coding	0.035000	0.601990			
Oct4_nocontrol_ChIP_peaks_unique-465	chr7	38270583	38270783	+	-0.96329	NA	intron (NM_025390, intron 1 of 6)	intron (NM_025390, intron 1 of 6)	665	NM_025390	66161	Mm.22284	NM_025390	ENSMUSG00000030423	Pop4	1110023P21Rik|Rpp29	processing of precursor 4, ribonuclease P/MRP family, (S. cerevisiae)	protein-coding	0.015000	0.462687			
ePOU_nocontrol_ChIP_peaks_unique-1315	chr19	49728768	49728968	+	-0.96329	NA	Intergenic	Intergenic	949778	NM_021377	58178	Mm.313672	NM_021377	ENSMUSG00000043531	Sorcs1	Sorcs|mSorCS	sortilin-related VPS10 domain containing receptor 1	protein-coding	0.000000	0.313433			
ePOU_nocontrol_ChIP_peaks_unique-2578	chr9	99552528	99552728	+	-0.96329	NA	intron (NM_001166138, intron 1 of 11)	intron (NM_001166138, intron 1 of 11)	16271	NM_028768	74125	Mm.234823	NM_028768	ENSMUSG00000032468	Armc8	1200015K23Rik|Gid5|HSPC056	armadillo repeat containing 8	protein-coding	0.000000	0.308458			-34(TCTTTATTATGCAATT,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-301	chr10	102697395	102697595	+	-0.96329	NA	Intergenic	L1MA6|LINE|L1	185273	NM_146240	237504	Mm.282672	NM_146240	ENSMUSG00000044921	Rassf9	AW322107|Pamci	Ras association (RalGDS/AF-6) domain family (N-terminal) member 9	protein-coding	0.005000	0.328358			
ePOU_nocontrol_ChIP_peaks_unique-2265	chr7	96951571	96951771	+	-0.96329	NA	5' UTR (NM_153591, exon 1 of 14)	5' UTR (NM_153591, exon 1 of 14)	144	NM_153591	244141	Mm.274864	NM_153591	ENSMUSG00000018995	Nars2	AI875199	asparaginyl-tRNA synthetase 2 (mitochondrial)(putative)	protein-coding	0.105000	0.656716			
ePOU_nocontrol_ChIP_peaks_unique-670	chr13	51751696	51751896	+	-0.96329	NA	intron (NM_001281880, intron 2 of 16)	intron (NM_001281880, intron 2 of 16)	41951	NM_001281880	20354	Mm.33903	NM_013660	ENSMUSG00000021451	Sema4d	CD100|Semacl2|Semaj|Semcl2|coll-4	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D	protein-coding	0.015000	0.472637			-13(GTATGCATAACAATGC,-,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1132	chr17	73804737	73804937	+	-0.96329	NA	promoter-TSS (NM_020578)	promoter-TSS (NM_020578)	-4	NM_020578	57440	Mm.18526	NM_020578	ENSMUSG00000024065	Ehd3	Ehd2	EH-domain containing 3	protein-coding	0.125000	0.691542			
ePOU_nocontrol_ChIP_peaks_unique-541	chr12	47140793	47140993	+	-0.96329	NA	Intergenic	Intergenic	-322126	NM_001364634	664883	Mm.247195	NM_021361	ENSMUSG00000021047	Nova1	9430099M15Rik|G630039L02|Nova-1	neuro-oncological ventral antigen 1	protein-coding	0.010000	0.457711			-65(GCTTAGTTATGCTAAA,+,0.00)
ePOU_nocontrol_ChIP_peaks_unique-1381	chr2	55144128	55144328	+	-0.96329	NA	Intergenic	Intergenic	-291742	NM_008426	16519	Mm.5127	NM_008426	ENSMUSG00000026824	Kcnj3	GIRK-1|GIRK1|Kcnf3|Kir3.1	potassium inwardly-rectifying channel, subfamily J, member 3	protein-coding	0.005000	0.293532			
ePOU_nocontrol_ChIP_peaks_unique-2607	chr9	115310526	115310726	+	-0.96329	NA	promoter-TSS (NM_024222)	promoter-TSS (NM_024222)	-158	NM_024222	68292	Mm.296158	NM_024222	ENSMUSG00000032437	Stt3b	1300006C19Rik|Simp	STT3, subunit of the oligosaccharyltransferase complex, homolog B (S. cerevisiae)	protein-coding	0.115000	0.701493			
ePOU_nocontrol_ChIP_peaks_unique-1794	chr4	87986558	87986758	+	-0.96329	NA	intron (NM_027326, intron 2 of 10)	B3|SINE|B2	46749	NM_027326	70122	Mm.288898	NM_027326	ENSMUSG00000028496	Mllt3	2210011H10Rik|2610012I03Rik|3830408D16Rik|Af9|D4Ertd321e	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 3	protein-coding	0.010000	0.368159			
Oct4_nocontrol_ChIP_peaks_unique-315	chr2	117133826	117134026	+	-0.96329	NA	intron (NM_001277256, intron 1 of 4)	intron (NM_001277256, intron 1 of 4)	12855	NM_001277256	114715	Mm.245890	NM_033524	ENSMUSG00000027351	Spred1	5730461F13Rik|AL024345|AW047647	sprouty protein with EVH-1 domain 1, related sequence	protein-coding	0.000000	0.353234			
ePOU_nocontrol_ChIP_peaks_unique-2539	chr9	63234420	63234620	+	-0.96329	NA	intron (NM_011840, intron 17 of 21)	intron (NM_011840, intron 17 of 21)	-85559	NM_001163758	207667	Mm.36349	NM_172446	ENSMUSG00000022245	Skor1	AV273001|C230094B15Rik|Corl1|Lbxcor1	SKI family transcriptional corepressor 1	protein-coding	0.005000	0.398010			-16(ATTTGCATAATAATAG,-,0.00)
Oct4_nocontrol_ChIP_peaks_unique-512	chr8	83810575	83810775	+	-0.96329	NA	Intergenic	B3|SINE|B2	-69364	NM_011925	26364	Mm.334648	NM_011925	ENSMUSG00000002885	Adgre5	AA409984|Cd97|TM7LN1	adhesion G protein-coupled receptor E5	protein-coding	0.005000	0.417910			
ePOU_nocontrol_ChIP_peaks_unique-527	chr12	35395346	35395546	+	-0.96329	NA	Intergenic	Intergenic	139543	NM_013464	11622	Mm.341377	NM_013464	ENSMUSG00000019256	Ahr	Ah|Ahh|Ahre|In|bHLHe76	aryl-hydrocarbon receptor	protein-coding	0.005000	0.348259		78(CATGAATATTCTTT,+,0.00)	
merged_common-472	chr2	58812968	58813168	+	-0.96802	NA	Intergenic	L1MB1|LINE|L1	57884	NM_001289659	76654	Mm.200370	NM_029692	ENSMUSG00000026839	Upp2	1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2	uridine phosphorylase 2	protein-coding	0.000000	0.383085		-42(CTTGAATATGTATT,+,0.00)	
merged_common-753	chr7	99980408	99980608	+	-0.97728	NA	promoter-TSS (NM_175388)	promoter-TSS (NM_175388)	-50	NM_175388	108937	Mm.323087	NM_175388	ENSMUSG00000058761	Rnf169	2900057K09Rik	ring finger protein 169	protein-coding	0.070000	0.577114		4(TCTGCATATTCATG,+,0.00),4(TCTGCATATTCATG,-,0.00)	
ePOU_nocontrol_ChIP_peaks_unique-1544	chr3	21672629	21672829	+	-0.97812	NA	Intergenic	Intergenic	-403923	NM_030732	81004	Mm.202966	NM_030732	ENSMUSG00000027630	Tbl1xr1	8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1	transducin (beta)-like 1X-linked receptor 1	protein-coding	0.010000	0.412935			-68(ATTAGCATATGAAAGA,-,0.00),59(TCTATGCTATGCAAAT,+,0.00)
merged_common-231	chr13	43453245	43453445	+	-0.97812	NA	intron (NM_019930, intron 2 of 13)	Lx8b|LINE|L1	27628	NM_019930	56705	Mm.148781	NM_019930	ENSMUSG00000038546	Ranbp9	IBAP-1|Ibap1|RanBPM	RAN binding protein 9	protein-coding	0.015000	0.422886			-79(ATGTTGTCTTTCATAT,+,0.00)
merged_common-497	chr2	121212836	121213036	+	-0.97812	NA	intron (NM_013735, intron 17 of 27)	intron (NM_013735, intron 17 of 27)	41768	NR_077245	51885	Mm.383499	NM_153387	ENSMUSG00000027263	Tubgcp4	4932441P04Rik|76p|D2Ertd435e|GCP-4	tubulin, gamma complex associated protein 4	protein-coding	0.000000	0.303483			
merged_common-721	chr6	134688244	134688444	+	-0.97812	NA	intron (NM_001170479, intron 3 of 3)	intron (NM_001170479, intron 3 of 3)	47404	NM_026371	67774	Mm.41892	NM_026371	ENSMUSG00000042992	Borcs5	5830457J20Rik|AW124643|Loh12cr1	BLOC-1 related complex subunit 5	protein-coding	0.000000	0.407960		52(CTTGCATATTCATT,+,0.00),52(CTTGCATATTCATT,-,0.00)	7(CTTTCCAAAACAAGGC,-,0.00)
merged_common-439	chr19	47346138	47346338	+	-0.97812	NA	intron (NM_001164717, intron 5 of 13)	intron (NM_001164717, intron 5 of 13)	-72649	NR_105961	102466782		NR_105961	ENSMUSG00000098786	Mir6995	Gm27576|mmu-mir-6995	microRNA 6995	ncRNA	0.010000	0.467662			
merged_common-16	chr1	56732583	56732783	+	-0.97812	NA	Intergenic	Intergenic	-95232	NM_027661	71066	Mm.152656	NM_027661	ENSMUSG00000045336	Hsfy2	4933413G11Rik|Hspy2l	heat shock transcription factor, Y-linked 2	protein-coding	0.005000	0.288557			
merged_common-800	chr8	92743326	92743526	+	-0.97812	NA	Intergenic	Intergenic	69137	NM_001301137	64379	Mm.137247	NM_022428	ENSMUSG00000031738	Irx6	-	Iroquois homeobox 6	protein-coding	0.025000	0.393035			
merged_common-260	chr14	56909128	56909328	+	-0.97812	NA	intron (NM_001360643, intron 3 of 24)	Lx5b|LINE|L1	22385	NM_001360643	76007	Mm.31417	NM_029498	ENSMUSG00000021945	Zmym2	5830413P05Rik|FIM|MYM|RAMP|SCLL|Zfp198|Znf198	zinc finger, MYM-type 2	protein-coding	0.005000	0.358209