PeakID (cmd=annotatePeaks.pl Oct4_unique_nocontrol_MA_xls.bed mm10 -m MORE+1_VM_v2.0.mot MORE_VM_v2.0.mot soxoct_VM_2.mot -size -100,100) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type CpG% GC% MORE+1_VM_v2 Distance From Peak(sequence,strand,conservation) MORE_VM_v2 Distance From Peak(sequence,strand,conservation) soxoct_Marson_VM_soxpartStringent Distance From Peak(sequence,strand,conservation) merged_common-157 chr9 60605262 60605462 + -1.02555 NA intron (NM_145616, intron 12 of 16) intron (NM_145616, intron 12 of 16) -59480 NR_040463 100504561 Mm.410770 NR_040463 ENSMUSG00000111761 9230112J17Rik - RIKEN cDNA 9230112J17 gene ncRNA 0.005000 0.303483 -96(ATTTCCACAAAAATGA,-,0.00),34(ATTTACAATTCAAAGG,-,0.00) merged_common-130 chr4 148591005 148591205 + -1.02555 NA promoter-TSS (NM_009272) promoter-TSS (NM_009272) -408 NM_009272 20810 Mm.10 NM_009272 ENSMUSG00000006442 Srm AA407669|SpdST|SpdSy spermidine synthase protein-coding 0.040000 0.462687 -39(TTTGAATATGCATG,+,0.00),-39(TTTGAATATGCATG,-,0.00) merged_common-123 chr4 88159649 88159849 + -1.04158 NA intron (NM_001081184, intron 5 of 43) intron (NM_001081184, intron 5 of 43) 37709 NR_030478 735282 NR_030478 ENSMUSG00000070077 Mir491 Mirn491|mir-491|mmu-mir-491 microRNA 491 ncRNA 0.010000 0.378109 20(TCTGCATATTCATA,+,0.00),20(TCTGCATATTCATA,-,0.00) merged_common-54 chr15 41377658 41377858 + -1.04158 NA Intergenic B3A|SINE|B2 -69724 NM_001130166 170719 Mm.254267 NM_130885 ENSMUSG00000022307 Oxr1 2210416C20Rik|C7|C7B oxidation resistance 1 protein-coding 0.000000 0.363184 ePOU_nocontrol_ChIP_peaks_unique-53 chr12 84586449 84586649 + -1.04162 NA intron (NM_007701, intron 3 of 4) MER2|DNA|TcMar-Tigger 16721 NM_007701 12677 Mm.4405 NM_007701 ENSMUSG00000021239 Vsx2 Chx10|Hox-10|Hox10|or visual system homeobox 2 protein-coding 0.000000 0.343284 -29(AATGTATATGCATC,+,0.00),-29(AATGTATATGCATC,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-43 chr11 80208893 80209093 + -1.04162 NA promoter-TSS (NM_001163354) promoter-TSS (NM_001163354) -58 NM_001362868 59040 Mm.489674 NM_021536 ENSMUSG00000017686 Rhot1 2210403N23Rik|AA415293|AF244542|AI834919|Arht1|C430039G08Rik|Miro1 ras homolog family member T1 protein-coding 0.115000 0.671642 ePOU_nocontrol_ChIP_peaks_unique-126 chr2 134002651 134002851 + -1.04162 NA Intergenic Intergenic 438043 NR_037273 100526500 NR_037273 ENSMUSG00000093338 Mir3090 mmu-mir-3090 microRNA 3090 ncRNA 0.010000 0.283582 merged_common-13 chr10 53585844 53586044 + -1.04162 NA intron (NM_027830, intron 7 of 12) Lx7|LINE|L1 -11017 NM_025541 66403 Mm.272989 NM_025541 ENSMUSG00000019857 Asf1a 2310079C17Rik|C79052 anti-silencing function 1A histone chaperone protein-coding 0.010000 0.368159 Oct4_nocontrol_ChIP_peaks_unique-92 chr12 81496936 81497136 + -1.04162 NA non-coding (NR_132136, exon 3 of 3) non-coding (NR_132136, exon 3 of 3) -11899 NM_001309808 66272 Mm.439970 NM_025461 ENSMUSG00000091803 Cox16 1810020G14Rik|1810055I05Rik|BB388670 cytochrome c oxidase assembly protein 16 protein-coding 0.020000 0.442786 Oct4_nocontrol_ChIP_peaks_unique-185 chr19 15898370 15898570 + -1.04162 NA Intergenic Intergenic 26152 NM_001205339 107272 Mm.289936 NM_177420 ENSMUSG00000024640 Psat1 D8Ertd814e|EPIP|PSA|Psat phosphoserine aminotransferase 1 protein-coding 0.000000 0.273632 27(TTTGTATTATGCATA,+,0.00) 27(TTTGTATTATGCATAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-202 chr8 13104888 13105088 + -1.04162 NA promoter-TSS (NM_146207) promoter-TSS (NM_146207) 355 NM_178708 234069 Mm.103427 NM_178708 ENSMUSG00000038542 Pcid2 A730042J05Rik PCI domain containing 2 protein-coding 0.135000 0.706468 Oct4_nocontrol_ChIP_peaks_unique-206 chr2 58587124 58587324 + -1.04162 NA intron (NM_001289660, intron 1 of 7) intron (NM_001289660, intron 1 of 7) 19890 NM_001289660 76654 Mm.200370 NM_029692 ENSMUSG00000026839 Upp2 1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 0.005000 0.363184 -73(TATGTATATGCATA,+,0.00),-73(TATGTATATGCATA,-,0.00),-59(TATGTATATGCATA,+,0.00),-59(TATGTATATGCATA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-141 chr3 108653853 108654053 + -1.04162 NA promoter-TSS (NM_001177770) promoter-TSS (NM_001177770) 13 NM_001177770 229725 Mm.214545 NM_145543 ENSMUSG00000027884 Clcc1 Mclc chloride channel CLIC-like 1 protein-coding 0.140000 0.731343 ePOU_nocontrol_ChIP_peaks_unique-55 chr12 89901254 89901454 + -1.04162 NA intron (NM_001252074, intron 1 of 6) intron (NM_001252074, intron 1 of 6) 88871 NM_001252074 18191 Mm.425766 NM_172544 ENSMUSG00000066392 Nrxn3 - neurexin III protein-coding 0.005000 0.363184 merged_common-127 chr4 129189768 129189968 + -1.04162 NA promoter-TSS (NM_001347203) promoter-TSS (NM_001347203) -35 NR_160965 107271 Mm.145488 NM_134151 ENSMUSG00000028811 Yars AL024047|AU018965 tyrosyl-tRNA synthetase protein-coding 0.090000 0.577114 merged_common-11 chr10 11908642 11908842 + -1.04162 NA Intergenic Intergenic 299518 NM_013898 30058 Mm.214504 NM_013898 ENSMUSG00000048007 Timm8a1 DXHXS1274E|Ddp1|Fci-12|Tim8a|Timm8a translocase of inner mitochondrial membrane 8A1 protein-coding 0.000000 0.303483 78(GATGCATTTGCATA,+,0.00),78(GATGCATTTGCATA,-,0.00),84(TTTGCATATGTATG,+,0.00),84(TTTGCATATGTATG,-,0.00) 83(ATTTGCATATGTATGA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-365 chr9 106031469 106031669 + -1.04162 NA intron (NM_026763, intron 21 of 37) intron (NM_026763, intron 21 of 37) 65122 NM_026763 68553 Mm.28854 NM_026763 ENSMUSG00000032572 Col6a4 1110001D15Rik|AI413310|AU023415|Dvwa|EG235580|Vwa6 collagen, type VI, alpha 4 protein-coding 0.000000 0.373134 -69(TGTGCATATGCATA,+,0.00),-69(TGTGCATATGCATA,-,0.00),-13(TTTGCATATGCATA,+,0.00),-13(TTTGCATATGCATA,-,0.00),43(TGTACATATGCATA,+,0.00),43(TGTACATATGCATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-46 chr10 40840530 40840730 + -1.04162 NA intron (NM_027879, intron 12 of 14) intron (NM_027879, intron 12 of 14) 42513 NM_027879 71713 Mm.46063 NM_027879 ENSMUSG00000038446 Cdc40 1200003H23Rik|EHB3|PRP17 cell division cycle 40 protein-coding 0.015000 0.452736 ePOU_nocontrol_ChIP_peaks_unique-192 chr7 94504773 94504973 + -1.04162 NA Intergenic Lx6|LINE|L1 -1320697 NM_001358087 100040298 Mm.260904 NM_001358087 Gm15501 EyeLinc5 predicted pseudogene 15501 protein-coding 0.005000 0.398010 -3(CATTGCTCATGTTAAT,+,0.00) merged_common-108 chr3 104316509 104316709 + -1.04162 NA Intergenic Intergenic -96203 NM_133853 99470 Mm.264849 NM_133853 ENSMUSG00000052539 Magi3 4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 0.000000 0.338308 -18(TATATGTTATGCAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-267 chr4 56726043 56726243 + -1.04162 NA Intergenic Intergenic 15282 NM_025271 11471 Mm.251434 NM_025271 ENSMUSG00000070980 Actl7b Gm26657|Tact1 actin-like 7b protein-coding 0.030000 0.447761 ePOU_nocontrol_ChIP_peaks_unique-7 chr1 64958752 64958952 + -1.04162 NA Intergenic Intergenic -2028 NM_001039493 241075 Mm.239534 NM_175509 ENSMUSG00000051344 Plekhm3 9430067K14Rik|A230102O09Rik|AI449570|DAPR|Plekhm1l pleckstrin homology domain containing, family M, member 3 protein-coding 0.000000 0.383085 -47(TTTTGTTCTTTTAAAT,+,0.00) merged_common-140 chr6 50456053 50456253 + -1.04162 NA promoter-TSS (NM_001163645) promoter-TSS (NM_001163645) 17 NM_001163645 71720 Mm.44153 NM_027881 ENSMUSG00000029822 Osbpl3 1200014M06Rik|6720421I08Rik|A530055M08|ORP-3|ORP3|OSBP3 oxysterol binding protein-like 3 protein-coding 0.065000 0.616915 ePOU_nocontrol_ChIP_peaks_unique-70 chr14 48538086 48538286 + -1.04162 NA Intergenic Intergenic 91834 NM_172600 218989 Mm.85211 NM_172600 ENSMUSG00000036339 Tmem260 5930435P15|6720456H20Rik transmembrane protein 260 protein-coding 0.000000 0.348259 -18(ATTAAAAAAAAAAAAA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-205 chr8 66323558 66323758 + -1.04162 NA intron (NM_175188, intron 4 of 7) intron (NM_175188, intron 4 of 7) -62643 NM_001166375 72925 Mm.380457 NM_175188 ENSMUSG00000036469 March1 2900024D24Rik|BB085186 membrane-associated ring finger (C3HC4) 1 protein-coding 0.010000 0.457711 merged_common chr1 45443330 45443530 + -1.04162 NA intron (NM_007737, intron 1 of 53) intron (NM_007737, intron 1 of 53) 59852 NM_007737 12832 Mm.10299 NM_007737 ENSMUSG00000026042 Col5a2 1110014L14Rik collagen, type V, alpha 2 protein-coding 0.010000 0.323383 ePOU_nocontrol_ChIP_peaks_unique-24 chr10 85898516 85898716 + -1.04162 NA intron (NM_181650, intron 10 of 10) RMER12|LTR|ERVK 18113 NM_001302887 72843 Mm.25307 NM_181650 ENSMUSG00000035529 Prdm4 1700031E19Rik|2810470D21Rik|AW552272|SC-1|SC1 PR domain containing 4 protein-coding 0.005000 0.407960 ePOU_nocontrol_ChIP_peaks_unique-20 chr10 24805178 24805378 + -1.04162 NA intron (NM_134005, intron 10 of 24) RMER5|LTR|ERV1 30917 NM_134005 209558 Mm.338425 NM_134005 ENSMUSG00000019989 Enpp3 AI876438|CD203c ectonucleotide pyrophosphatase/phosphodiesterase 3 protein-coding 0.000000 0.383085 27(GTTTTGTTATGCTAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-205 chr2 46572182 46572382 + -1.04162 NA Intergenic Intergenic 875677 NR_040497 69405 Mm.396184 NR_040497 ENSMUSG00000086202 1700019E08Rik - RIKEN cDNA 1700019E08 gene ncRNA 0.010000 0.323383 Oct4_nocontrol_ChIP_peaks_unique-288 chr5 105400530 105400730 + -1.04162 NA Intergenic Intergenic -15145 NM_001033550 433926 Mm.439781 NM_001033550 ENSMUSG00000070639 Lrrc8b 2210408K08Rik|R75581|Ta-lrrp|mKIAA0231 leucine rich repeat containing 8 family, member B protein-coding 0.025000 0.472637 80(ATTTCCATAAAAATAG,-,0.00) merged_common-74 chr18 29579403 29579603 + -1.04162 NA Intergenic Intergenic -83087 NR_045391 78058 Mm.416952 NR_045391 ENSMUSG00000117618 4930578E11Rik - RIKEN cDNA 4930578E11 gene ncRNA 0.000000 0.358209 ePOU_nocontrol_ChIP_peaks_unique-147 chr4 11966557 11966757 + -1.04162 NA promoter-TSS (NR_040577) promoter-TSS (NR_040577) 83 NR_040577 100503636 Mm.209078 NR_040577 1700123M08Rik 1600025K15Rik RIKEN cDNA 1700123M08 gene ncRNA 0.100000 0.641791 Oct4_nocontrol_ChIP_peaks_unique-191 chr19 54055953 54056153 + -1.04162 NA Intergenic Intergenic 10794 NM_007417 11551 Mm.235195 NM_007417 ENSMUSG00000033717 Adra2a AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR adrenergic receptor, alpha 2a protein-coding 0.015000 0.422886 0(TTTTACATAACAATGG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-182 chr6 97917336 97917536 + -1.04162 NA intron (NM_001113198, intron 1 of 9) B3A|SINE|B2 -12381 NM_001178049 17342 Mm.333284 NM_008601 ENSMUSG00000035158 Mitf BCC2|Bhlhe32|Gsfbcc2|Vitiligo|Wh|bw|mi|vit melanogenesis associated transcription factor protein-coding 0.015000 0.422886 -48(TGTGCATATGTATA,+,0.00),-48(TGTGCATATGTATA,-,0.00) merged_common-6 chr1 106182469 106182669 + -1.04162 NA intron (NM_133821, intron 1 of 16) intron (NM_133821, intron 1 of 16) 10700 NM_133821 98432 Mm.24115 NM_133821 ENSMUSG00000044340 Phlpp1 AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606 PH domain and leucine rich repeat protein phosphatase 1 protein-coding 0.020000 0.383085 Oct4_nocontrol_ChIP_peaks_unique-86 chr12 40668040 40668240 + -1.04162 NA intron (NM_172803, intron 8 of 52) intron (NM_172803, intron 8 of 52) 222087 NM_172803 238130 Mm.341423 NM_172803 ENSMUSG00000035954 Dock4 5330406C03|6330411N01Rik|AF263288|C030023J22|mKIAA0716 dedicator of cytokinesis 4 protein-coding 0.000000 0.373134 -52(CATGAATTATTAAAA,-,0.00) merged_common-24 chr11 97884185 97884385 + -1.04162 NA promoter-TSS (NM_001081435) promoter-TSS (NM_001081435) -131 NM_001081435 72973 Mm.245939 NM_001081435 ENSMUSG00000070336 Fbxo47 2900052P03Rik|Gm1562 F-box protein 47 protein-coding 0.070000 0.626866 -38(CATGAATATTCAGA,+,0.00),-38(CATGAATATTCAGA,-,0.00) merged_common-44 chr14 60653270 60653470 + -1.04162 NA intron (NM_001033272, intron 1 of 12) PB1D11|SINE|Alu 18665 NM_001033272 219140 Mm.149776 NM_001033272 ENSMUSG00000021990 Spata13 C79050|ESTM11|X83327|mFLJ00298 spermatogenesis associated 13 protein-coding 0.015000 0.507463 64(TATGCATATGAATA,+,0.00),64(TATGCATATGAATA,-,0.00) merged_common-60 chr16 23021613 23021813 + -1.04162 NA intron (NM_201375, intron 3 of 9) RLTR22_Mur|LTR|ERVK 7388 NM_001102410 385643 Mm.440414 NM_201375 ENSMUSG00000060459 Kng2 - kininogen 2 protein-coding 0.000000 0.343284 30(TATACATATGTAAG,-,0.00) merged_common-27 chr12 49579579 49579779 + -1.04162 NA Intergenic Intergenic -98817 NR_045472 69054 Mm.417838 NR_045472 ENSMUSG00000100844 1810007C17Rik - RIKEN cDNA 1810007C17 gene ncRNA 0.005000 0.407960 -10(GCATTATAATGCAGAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-237 chr2 134585152 134585352 + -1.04162 NA Intergenic Intergenic -30900 NM_010403 15112 Mm.26634 NM_010403 ENSMUSG00000027261 Hao1 GOX|Gox1|Hao-1 hydroxyacid oxidase 1, liver protein-coding 0.000000 0.293532 26(TTCTGCATGACAATTG,-,0.00) merged_common-18 chr10 120822845 120823045 + -1.04162 NA intron (NM_177092, intron 5 of 6) intron (NM_177092, intron 5 of 6) -34684 NR_038023 100504616 Mm.451174 NR_038023 ENSMUSG00000087480 Gm15910 - predicted gene 15910 ncRNA 0.010000 0.368159 Oct4_nocontrol_ChIP_peaks_unique-189 chr19 40659975 40660175 + -1.04162 NA intron (NM_009848, intron 1 of 9) intron (NM_009848, intron 1 of 9) 305 NM_009848 12495 Mm.2824 NM_009848 ENSMUSG00000048120 Entpd1 2610206B08Rik|AA408691|Cd39|E130009M23Rik|NTPDase-1 ectonucleoside triphosphate diphosphohydrolase 1 protein-coding 0.015000 0.452736 14(GATGAATATTCATA,+,0.00),14(GATGAATATTCATA,-,0.00) 30(TAATTGGTATGCAGAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-20 chr1 84092872 84093072 + -1.04162 NA intron (NM_001003948, intron 2 of 2) intron (NM_001003948, intron 2 of 2) 125989 NR_105771 102465181 NR_105771 ENSMUSG00000098851 Mir6353 Gm27391|mmu-mir-6353 microRNA 6353 ncRNA 0.015000 0.452736 Oct4_nocontrol_ChIP_peaks_unique-274 chr4 132286821 132287021 + -1.04162 NA intron (NM_025579, intron 3 of 5) RLTR17B_Mm|LTR|ERVK 12546 NM_025579 66464 Mm.331926 NM_025579 ENSMUSG00000028899 Taf12 20kDa|2810422D08Rik|AW557038|Taf2J TATA-box binding protein associated factor 12 protein-coding 0.010000 0.353234 20(TATACATATGCATA,+,0.00),20(TATACATATGCATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-108 chr13 59442033 59442233 + -1.04162 NA Intergenic Intergenic 102318 NM_001284221 67269 Mm.153008 NM_023328 ENSMUSG00000021557 Agtpbp1 1700020N17Rik|2310001G17Rik|2900054O13Rik|4930445M19Rik|5730402G09Rik|CCP1|Nna1|nmf243|pcd ATP/GTP binding protein 1 protein-coding 0.010000 0.402985 -8(TATGCATATGTACA,+,0.00),-8(TATGCATATGTACA,-,0.00),0(TGTACATATGCATG,-,0.00) -34(GGTTTGTCATGAAGAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-187 chr7 12967089 12967289 + -1.04162 NA intron (NM_001362140, intron 1 of 2) B1_Mur2|SINE|Alu 1351 NM_178732 243834 Mm.133086 NM_178732 ENSMUSG00000004500 Zfp324 A930002M05|D430030K24Rik|ZF5128 zinc finger protein 324 protein-coding 0.010000 0.492537 -61(TTTTGAAAGACAATCT,-,0.00) merged_common-106 chr3 99443659 99443859 + -1.04162 NA Intergenic Intergenic 189999 NM_009323 21384 Mm.88761 NM_009323 ENSMUSG00000027868 Tbx15 Tbx14|Tbx8|de T-box 15 protein-coding 0.010000 0.378109 -86(CCATTTCTATTCAAAT,+,0.00) merged_common-45 chr14 84223407 84223607 + -1.04162 NA Intergenic Lx7|LINE|L1 -148217 NR_153783 102635012 Mm.399509 NR_153783 ENSMUSG00000115043 Gm32455 - predicted gene, 32455 ncRNA 0.005000 0.323383 merged_common-128 chr4 129966408 129966608 + -1.04162 NA Intergenic Intergenic 5660 NR_040648 72225 Mm.102193 NR_040647 1700003M07Rik - RIKEN cDNA 1700003M07 gene ncRNA 0.020000 0.517413 -20(CCCTTGTTATGCAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-107 chr13 52325755 52325955 + -1.04162 NA Intergenic RLTR11A2|LTR|ERVK 204981 NM_001024474 68203 Mm.29362 NM_001024474 ENSMUSG00000047842 Diras2 2900052J15Rik|AI414999 DIRAS family, GTP-binding RAS-like 2 protein-coding 0.020000 0.447761 -13(ATAAGCATGAGAATTC,-,0.00) merged_common-133 chr5 93206513 93206713 + -1.04162 NA promoter-TSS (NM_017367) promoter-TSS (NM_017367) 95 NM_029363 75610 Mm.175502 NM_029363 ENSMUSG00000029384 2010109A12Rik - RIKEN cDNA 2010109A12 gene protein-coding 0.060000 0.527363 ePOU_nocontrol_ChIP_peaks_unique-90 chr17 29018422 29018622 + -1.04162 NA Intergenic B1F|SINE|Alu -10527 NM_134115 106504 Mm.439986 NM_134115 ENSMUSG00000024006 Stk38 5830476G13Rik|9530097A09Rik|AA617404|Ndr1 serine/threonine kinase 38 protein-coding 0.005000 0.482587 -9(CCTCACTCTTGGAAAT,+,0.00) merged_common-46 chr14 86396164 86396364 + -1.04162 NA Intergenic Intergenic 150294 NR_040457 75155 Mm.399239 NR_040457 ENSMUSG00000115271 4930529K09Rik 4930507G21Rik RIKEN cDNA 4930529K09 gene ncRNA 0.020000 0.477612 -72(ATTTGCATAGCAAAGA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-216 chr2 85037225 85037425 + -1.04162 NA promoter-TSS (NM_001136081) promoter-TSS (NM_001136081) -126 NM_001136081 20833 Mm.219793 NM_182990 ENSMUSG00000027067 Ssrp1 C81323|Hmg1-rs1|Hmgi-rs3|Hmgox|T160 structure specific recognition protein 1 protein-coding 0.100000 0.686567 ePOU_nocontrol_ChIP_peaks_unique-125 chr2 132781822 132782022 + -1.04162 NA intron (NM_007694, intron 1 of 4) intron (NM_007694, intron 1 of 4) 280 NM_007694 12653 Mm.255241 NM_007694 ENSMUSG00000027350 Chgb Scg-1|cgB|sgI chromogranin B protein-coding 0.025000 0.567164 ePOU_nocontrol_ChIP_peaks_unique-197 chr7 127935561 127935761 + -1.04162 NA exon (NM_001319147, exon 10 of 15) exon (NM_001319147, exon 10 of 15) -5548 NM_133351 76560 Mm.5875 NM_133351 ENSMUSG00000030800 Prss8 2410039E18Rik|AI313909|C79772|CAP1|fr|mCAP1 protease, serine 8 (prostasin) protein-coding 0.115000 0.726368 ePOU_nocontrol_ChIP_peaks_unique-228 chrX 82674703 82674903 + -1.04162 NA Intergenic Intergenic -274067 NM_007868 13405 Mm.275608 NM_007868 ENSMUSG00000045103 Dmd DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke dystrophin, muscular dystrophy protein-coding 0.000000 0.393035 -70(TGTGCATATGCATA,+,0.00),-70(TGTGCATATGCATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-187 chr19 26608554 26608754 + -1.04162 NA intron (NM_011416, intron 1 of 32) intron (NM_011416, intron 1 of 32) 3494 NM_011416 67155 Mm.491146 NM_011416 ENSMUSG00000024921 Smarca2 2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 0.015000 0.437811 -29(GCATTATTATGCAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-17 chr1 64255796 64255996 + -1.04162 NA Intergenic Intergenic -134507 NM_033563 93691 Mm.29466 NM_033563 ENSMUSG00000025959 Klf7 9830124P08Rik Kruppel-like factor 7 (ubiquitous) protein-coding 0.025000 0.502488 ePOU_nocontrol_ChIP_peaks_unique-219 chr9 35210960 35211160 + -1.04162 NA promoter-TSS (NM_001359815) promoter-TSS (NM_001359815) -5 NM_001291448 235169 Mm.138512 NM_172291 ENSMUSG00000039048 Foxred1 BC024806|TEG-23|Tex23 FAD-dependent oxidoreductase domain containing 1 protein-coding 0.110000 0.651741 Oct4_nocontrol_ChIP_peaks_unique-25 chr1 161131341 161131541 + -1.04162 NA promoter-TSS (NM_001039482) promoter-TSS (NM_001039482) 38 NM_001039482 226541 Mm.255165 NM_144876 ENSMUSG00000026705 Klhl20 AI504637|D930050H05Rik|Kleip|mKIAA4210 kelch-like 20 protein-coding 0.050000 0.597015 Oct4_nocontrol_ChIP_peaks_unique-160 chr17 10170999 10171199 + -1.04162 NA Intergenic Intergenic 148262 NM_001159517 19317 Mm.130694 NM_021881 ENSMUSG00000062078 Qk 1110003F05Rik|1500005P18|QkI|l(17)-1Wis|l17Wis1 quaking protein-coding 0.005000 0.398010 Oct4_nocontrol_ChIP_peaks_unique-293 chr5 144112774 144112974 + -1.04162 NA intron (NM_001081109, intron 1 of 13) intron (NM_001081109, intron 1 of 13) 12513 NM_001081109 231876 Mm.288726 NM_001081109 ENSMUSG00000038970 Lmtk2 2900041G10Rik|A330101P12Rik|BREK|KPI-2|KPI2|aatyk2|cprk lemur tyrosine kinase 2 protein-coding 0.005000 0.432836 66(TTATTGTTATGTAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-119 chr14 50809685 50809885 + -1.04162 NA intron (NM_009632, intron 1 of 15) intron (NM_009632, intron 1 of 15) 1869 NM_009632 11546 Mm.281482 NM_009632 ENSMUSG00000036023 Parp2 ADPRT-2|ARTD2|Adprt2|Adprtl2|Aspartl2|C78626|PARP-2|mPARP-2|pADPRT-2 poly (ADP-ribose) polymerase family, member 2 protein-coding 0.010000 0.412935 50(TTTAACATGAAAATAT,-,0.00) merged_common-162 chr9 105045502 105045702 + -1.09123 NA Intergenic Intergenic -7666 NM_001364513 94062 Mm.29746 NM_053159 ENSMUSG00000032563 Mrpl3 2010320L16Rik|5930422H18Rik|AA407889|L3mt mitochondrial ribosomal protein L3 protein-coding 0.010000 0.393035 -69(TATACATATGCAGG,-,0.00) -34(CTTTTCTTATGTATAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-232 chr2 126894315 126894515 + -1.09719 NA intron (NM_023220, intron 14 of 14) intron (NM_023220, intron 14 of 14) 7970 NR_106202 102466258 NR_106202 ENSMUSG00000098896 Mir3473g Gm27751|mmu-mir-3473g microRNA 3473g ncRNA 0.010000 0.402985 Oct4_nocontrol_ChIP_peaks_unique-22 chr1 123564632 123564832 + -1.09719 NA intron (NM_199021, intron 5 of 25) intron (NM_199021, intron 5 of 25) 480827 NM_199021 269109 Mm.417716 NM_199021 ENSMUSG00000036815 Dpp10 6430601K09Rik|DPP X|Dprp3 dipeptidylpeptidase 10 protein-coding 0.000000 0.313433 -73(CATGAAATTTGCATG,+,0.00) 43(TATGCATATGCATG,+,0.00),43(TATGCATATGCATG,-,0.00) -67(ATTTGCATGGAAATGG,-,0.00) merged_common-155 chr9 34279705 34279905 + -1.09719 NA Intergenic B4|SINE|B4 -208926 NM_001190913 67703 Mm.220710 NM_026324 ENSMUSG00000032036 Kirrel3 1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867 kirre like nephrin family adhesion molecule 3 protein-coding 0.010000 0.477612 12(CATGAATATGCATG,+,0.00),12(CATGAATATGCATG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-28 chr10 115860100 115860300 + -1.09719 NA Intergenic L1MDa|LINE|L1 42916 NM_001168680 216350 Mm.22270 NM_146010 ENSMUSG00000034127 Tspan8 C76990|E330007O21Rik|Tm4sf3 tetraspanin 8 protein-coding 0.010000 0.343284 -49(AAATTGTTTTGTAGAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-44 chr10 32414405 32414605 + -1.09719 NA intron (NM_001013411, intron 1 of 6) intron (NM_001013411, intron 1 of 6) 475410 NM_001013411 432450 Mm.49665 NM_001013411 ENSMUSG00000069670 Nkain2 6330571D19Rik|AW455467|Tcba1 Na+/K+ transporting ATPase interacting 2 protein-coding 0.000000 0.378109 -22(CATGCTTATTCATG,+,0.00),-22(CATGCTTATTCATG,-,0.00) merged_common-29 chr12 70584280 70584480 + -1.09719 NA intron (NR_037248, intron 4 of 4) L1MB2|LINE|L1 131226 NM_028339 72736 Mm.204670 NM_028339 ENSMUSG00000021072 Tmx1 2810425A04Rik|Txndc1 thioredoxin-related transmembrane protein 1 protein-coding 0.000000 0.378109 merged_common-141 chr6 84328702 84328902 + -1.09719 NA Intergenic (TTCA)n|Simple_repeat|Simple_repeat 95036 NR_046063 100038556 Mm.387783 NR_046063 ENSMUSG00000107797 Gm10445 - predicted gene 10445 ncRNA 0.000000 0.298507 merged_common-42 chr14 31695058 31695258 + -1.09719 NA Intergenic RLTR21|LTR|ERVK 54101 NM_025295 26363 Mm.282679 NM_025295 ENSMUSG00000021900 Btd - biotinidase protein-coding 0.000000 0.378109 merged_common-94 chr2 105877845 105878045 + -1.09719 NA intron (NM_023876, intron 2 of 9) intron (NM_023876, intron 2 of 9) 26619 NM_023876 77766 Mm.3608 NM_023876 ENSMUSG00000027167 Elp4 A330107A17Rik|Paxneb elongator acetyltransferase complex subunit 4 protein-coding 0.010000 0.343284 -3(CATTCATATGCATG,+,0.00),-3(CATTCATATGCATG,-,0.00) -49(ATTTCCAGGAGAAACA,-,0.00) merged_common-3 chr1 55747738 55747938 + -1.09719 NA intron (NM_001114663, intron 5 of 5) intron (NM_001114663, intron 5 of 5) -183403 NR_045837 329159 Mm.98697 NR_045837 ENSMUSG00000099950 9130227L01Rik - RIKEN cDNA 9130227L01 gene ncRNA 0.000000 0.432836 10(CATTAATTTTGCATA,+,0.00) merged_common-160 chr9 78615560 78615760 + -1.09719 NA 5' UTR (NM_153098, exon 1 of 33) 5' UTR (NM_153098, exon 1 of 33) 114 NM_153098 235505 Mm.32955 NM_153098 ENSMUSG00000046186 Cd109 9930012E15Rik|AI480638|GARP CD109 antigen protein-coding 0.050000 0.592040 merged_common-86 chr2 34249743 34249943 + -1.09719 NA intron (NM_001290576, intron 2 of 7) intron (NM_001290576, intron 2 of 7) 122202 NM_016768 18516 Mm.239941 NM_016768 ENSMUSG00000038718 Pbx3 - pre B cell leukemia homeobox 3 protein-coding 0.030000 0.477612 -85(ACTGCATAATTAATG,-,0.00) -4(ATTAACTAGAGAAAGC,-,0.00) merged_common-34 chr13 36012087 36012287 + -1.09719 NA intron (NM_201358, intron 2 of 2) intron (NM_201358, intron 2 of 2) 44281 NM_029628 76487 Mm.44745 NM_029628 ENSMUSG00000050423 Ppp1r3g 1600032L17Rik protein phosphatase 1, regulatory subunit 3G protein-coding 0.010000 0.437811 Oct4_nocontrol_ChIP_peaks_unique-307 chr6 99333459 99333659 + -1.14030 NA intron (NM_053202, intron 1 of 18) intron (NM_053202, intron 1 of 18) -67044 NM_001197321 108655 Mm.234965 NM_053202 ENSMUSG00000030067 Foxp1 3110052D19Rik|4932443N09Rik|AI461938|AW494214 forkhead box P1 protein-coding 0.010000 0.363184 -100(AATACATATGAATG,-,0.00),-58(CATGAATATGTATC,+,0.00),-58(CATGAATATGTATC,-,0.00),-40(TATGAATATGCATA,+,0.00),-40(TATGAATATGCATA,-,0.00) merged_common-30 chr12 95491820 95492020 + -1.14030 NA Intergenic Intergenic -200306 NM_201518 399558 Mm.341948 NM_201518 ENSMUSG00000047414 Flrt2 - fibronectin leucine rich transmembrane protein 2 protein-coding 0.005000 0.323383 merged_common-25 chr11 102539856 102540056 + -1.14030 NA intron (NM_001159492, intron 1 of 7) B3|SINE|B2 16202 NM_001159492 237943 Mm.260282 NM_001159492 ENSMUSG00000034621 Gpatch8 5430405G24Rik|AU018890|Fbm1|Gpatc8|mKIAA0553 G patch domain containing 8 protein-coding 0.005000 0.402985 -74(TCTTTGTCATGTAGAT,+,0.00),36(CTTTCCAAAAAAAAAA,-,0.00) merged_common-153 chr8 126978805 126979005 + -1.14030 NA intron (NR_151744, intron 1 of 1) intron (NR_151744, intron 1 of 1) 533 NR_151744 629746 Mm.264954 NR_151744 Gm29688 - predicted gene, 29688 ncRNA 0.015000 0.388060 36(ACTTTGTCATGCAAAA,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-266 chr4 55988673 55988873 + -1.14030 NA Intergenic Intergenic -456298 NM_010637 16600 Mm.4325 NM_010637 ENSMUSG00000003032 Klf4 EZF|Gklf|Zie Kruppel-like factor 4 (gut) protein-coding 0.000000 0.368159 -7(GTTGCATATTCATA,+,0.00),-7(GTTGCATATTCATA,-,0.00) -36(CTTTTGCTTTTTAAAT,+,0.00) merged_common-67 chr17 35513858 35514058 + -1.14030 NA intron (NM_001163763, intron 3 of 3) B1F|SINE|Alu 2866 NM_001163764 106795 Mm.11434 NM_025674 ENSMUSG00000050410 Tcf19 5730403J10Rik|AW495861 transcription factor 19 protein-coding 0.010000 0.472637 Oct4_nocontrol_ChIP_peaks_unique-16 chr1 63558002 63558202 + -1.17552 NA intron (NM_011780, intron 18 of 25) RLTR17B_Mm|LTR|ERVK -57866 NM_001370842 105243944 NM_001370842 ENSMUSG00000115378 Gm39653 - predicted gene, 39653 protein-coding 0.000000 0.273632 11(TATGCATATGTATA,+,0.00),11(TATGCATATGTATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-223 chr2 109844059 109844259 + -1.17552 NA Intergenic ERVL-int|LTR|ERVL -46719 NM_011699 22343 Mm.235300 NM_011699 ENSMUSG00000027162 Lin7c 9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3 lin-7 homolog C (C. elegans) protein-coding 0.010000 0.353234 25(TTTGAATATTCATT,+,0.00),25(TTTGAATATTCATT,-,0.00) 48(AGTTACATAACAATAC,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-197 chr2 16305128 16305328 + -1.27849 NA Intergenic Intergenic -51076 NM_026162 67448 Mm.313938 NM_026162 ENSMUSG00000026748 Plxdc2 1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r plexin domain containing 2 protein-coding 0.000000 0.398010 7(TATGAATATGCATT,+,0.00),7(TATGAATATGCATT,-,0.00) 36(ATTTTCTCTTAGAAAT,+,0.00) merged_common-144 chr7 126377426 126377626 + -1.27849 NA non-coding (NR_045537, exon 1 of 13) non-coding (NR_045537, exon 1 of 13) 408 NR_045537 73658 Mm.11112 NM_023712 ENSMUSG00000030741 Spns1 2210013K02Rik|Spin1|Spinl spinster homolog 1 protein-coding 0.065000 0.572139 merged_common-50 chr15 9527643 9527843 + -1.27849 NA intron (NM_001355680, intron 1 of 7) intron (NM_001355680, intron 1 of 7) 2133 NM_001355680 16197 Mm.389 NM_008372 ENSMUSG00000003882 Il7r CD127|IL-7Ralpha interleukin 7 receptor protein-coding 0.000000 0.373134 -27(ATTTACATTACAGTAA,-,0.00),56(TTATAATTATGCAAAT,+,0.00) merged_common-146 chr8 12179537 12179737 + -1.27849 NA Intergenic Intergenic -206134 NR_027975 434280 Mm.447484 NM_001013812 ENSMUSG00000047935 Sox1ot EG434280|Gm5607 Sox1 overlapping transcript ncRNA 0.030000 0.437811 Oct4_nocontrol_ChIP_peaks_unique-55 chr10 97152623 97152823 + -1.27849 NA Intergenic L1ME2|LINE|L1 116955 NR_045358 75301 Mm.108650 NR_045358 ENSMUSG00000111924 4930556N09Rik - RIKEN cDNA 4930556N09 gene ncRNA 0.005000 0.328358 23(CATGCATATGCACA,+,0.00),23(CATGCATATGCACA,-,0.00),35(CATACATATTCAAA,+,0.00),35(CATACATATTCAAA,-,0.00) merged_common-14 chr10 68039108 68039308 + -1.27849 NA intron (NM_001359318, intron 10 of 11) intron (NM_001359318, intron 10 of 11) 59638 NM_001359319 170799 Mm.209844 NM_133244 ENSMUSG00000037846 Rtkn2 B130039D23Rik|Mbf|Plekhk1 rhotekin 2 protein-coding 0.010000 0.368159 48(AATGAATATGTAAT,-,0.00) -57(ATCAGCATCATAATAA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-113 chr13 104212975 104213175 + -1.27849 NA intron (NM_172807, intron 7 of 10) intron (NM_172807, intron 7 of 10) -15536 NR_075088 60411 Mm.281498 NM_021790 ENSMUSG00000021714 Cenpk B130045K24Rik|BB232189|C530004N04Rik|Cenp-K|Solt|Solzt centromere protein K protein-coding 0.000000 0.417910 51(CATAGATATGCATA,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-368 chrM 758 958 + -1.27849 NA NA Intergenic NA NA 0.015000 0.328358 merged_common-4 chr1 64415951 64416151 + -1.27849 NA Intergenic Intergenic -116753 NM_133828 12912 Mm.422634 NM_009952 ENSMUSG00000025958 Creb1 2310001E10Rik|3526402H21Rik|AV083133|Creb|Creb-1 cAMP responsive element binding protein 1 protein-coding 0.015000 0.407960 36(AGATGCATGACAAAGG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-183 chr6 98483527 98483727 + -1.27890 NA Intergenic Intergenic -140873 NM_001128092 330390 Mm.484161 NM_001128092 ENSMUSG00000090667 Gm765 - predicted gene 765 protein-coding 0.000000 0.343284 -39(CTTTAAAAAAAAAAAA,-,0.00) merged_common-113 chr3 131627662 131627862 + -1.27890 NA intron (NM_001289478, intron 11 of 12) intron (NM_001289478, intron 11 of 12) 61730 NM_001289477 23971 Mm.244912 NM_011863 ENSMUSG00000028032 Papss1 AI325286|Asapk|SK1 3'-phosphoadenosine 5'-phosphosulfate synthase 1 protein-coding 0.005000 0.432836 -19(CCTTTCTAATGCAGAT,+,0.00),50(GGGTTGTCTTGCATAT,+,0.00) merged_common-163 chrM 11657 11857 + -1.27890 NA NA Intergenic NA NA 0.000000 0.323383 merged_common-129 chr4 143162020 143162220 + -1.27890 NA exon (NM_001256380, exon 6 of 8) exon (NM_001256380, exon 6 of 8) -25958 NR_105988 102465618 NR_105988 ENSMUSG00000106597 Mir7021 mmu-mir-7021 microRNA 7021 ncRNA 0.095000 0.651741 Oct4_nocontrol_ChIP_peaks_unique-174 chr18 43629323 43629523 + -1.27890 NA intron (NM_001163637, intron 1 of 21) intron (NM_001163637, intron 1 of 21) 58350 NM_001163637 76217 Mm.134602 NM_001163637 ENSMUSG00000024502 Jakmip2 6430702L21Rik|AI850334|D930046L20Rik janus kinase and microtubule interacting protein 2 protein-coding 0.000000 0.313433 -69(CATGAATATGCAAT,+,0.00),-69(CATGAATATGCAAT,-,0.00),-25(TATACATATGCAAT,-,0.00) merged_common-112 chr3 123771280 123771480 + -1.27890 NA Intergenic RLTR22_Mus|LTR|ERVK -80528 NR_121616 83398 Mm.443908 NM_031186 ENSMUSG00000027977 Ndst3 4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 protein-coding 0.005000 0.373134 32(CTTACATATGCATA,+,0.00) merged_common-31 chr12 99836368 99836568 + -1.27890 NA intron (NM_030172, intron 5 of 5) intron (NM_030172, intron 5 of 5) 46974 NM_030172 78767 Mm.235920 NM_030172 ENSMUSG00000021176 Efcab11 2610021K21Rik|2610110A13Rik EF-hand calcium binding domain 11 protein-coding 0.030000 0.383085 10(CATGCATGATTAATT,+,0.00) -44(TTTCTGTCATGCATTT,+,0.00) merged_common-161 chr9 101454798 101454998 + -1.27890 NA Intergenic MLT2B1|LTR|ERVL 112704 NR_110509 102633035 Mm.411422 NR_110509 ENSMUSG00000101941 Gm28979 - predicted gene 28979 ncRNA 0.000000 0.388060 -34(ATGTGAATGAATATGG,-,0.00) merged_common-36 chr13 55536509 55536709 + -1.27890 NA promoter-TSS (NM_134059) promoter-TSS (NM_134059) 49 NM_134059 72935 Mm.205045 NM_134059 ENSMUSG00000021494 Ddx41 2900024F02Rik|AA958953|ABS|AI324246 DEAD (Asp-Glu-Ala-Asp) box polypeptide 41 protein-coding 0.090000 0.582090 Oct4_nocontrol_ChIP_peaks_unique-102 chr13 28952336 28952536 + -1.27890 NA exon (NM_009238, exon 1 of 1) exon (NM_009238, exon 1 of 1) 1263 NM_009238 20677 Mm.240627 NM_009238 ENSMUSG00000076431 Sox4 AA682046|Sox-4 SRY (sex determining region Y)-box 4 protein-coding 0.100000 0.736318 Oct4_nocontrol_ChIP_peaks_unique-37 chr10 25079400 25079600 + -1.27890 NA Intergenic L1_Mur2|LINE|L1 120670 NM_001347460 432442 Mm.485937 NM_018747 ENSMUSG00000039166 Akap7 6430401D08|AI662165|AKAP15|Akap18|BB170514 A kinase (PRKA) anchor protein 7 protein-coding 0.000000 0.388060 79(ATTCTGTTATGTAAAT,+,0.00) merged_common-35 chr13 49652933 49653133 + -1.27890 NA promoter-TSS (NR_073167) promoter-TSS (NR_073167) -45 NR_073168 70930 Mm.258915 NM_001081350 ENSMUSG00000021392 Nol8 4921532D18Rik|5730412B09Rik nucleolar protein 8 protein-coding 0.090000 0.567164 merged_common-10 chr1 147005554 147005754 + -1.27890 NA Intergenic L1M1|LINE|L1 507967 NM_001357572 215378 Mm.441817 NM_153539 ENSMUSG00000035131 Brinp3 B830045N13Rik|Fam5c bone morphogenetic protein/retinoic acid inducible neural specific 3 protein-coding 0.000000 0.268657 ePOU_nocontrol_ChIP_peaks_unique-165 chr5 47277095 47277295 + -1.27890 NA Intergenic Intergenic -705960 NM_178804 20563 Mm.289739 NM_178804 ENSMUSG00000031558 Slit2 Drad-1|E030015M03Rik|E130320P19Rik|Slil3|b2b1200.1Clo|mKIAA4141|slit-2 slit guidance ligand 2 protein-coding 0.020000 0.388060 ePOU_nocontrol_ChIP_peaks_unique chr1 15984566 15984766 + -1.27890 NA Intergenic L1MA6|LINE|L1 -91944 NM_001033288 226866 Mm.131665 NM_001033288 ENSMUSG00000032719 Sbspon Gm106|Rpesp somatomedin B and thrombospondin, type 1 domain containing protein-coding 0.000000 0.273632 -86(CTTTTGTCATTTAAAA,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-319 chr7 74929216 74929416 + -1.27890 NA Intergenic Intergenic -100895 NR_131122 75205 Mm.399304 NR_131122 ENSMUSG00000108803 4930533N22Rik Gm44904 RIKEN cDNA 4930533N22 gene ncRNA 0.015000 0.412935 -4(GTATTGTCATGGAAAT,+,0.00) merged_common-87 chr2 57613428 57613628 + -1.27890 NA Intergenic Intergenic 375146 NM_010274 14571 Mm.3711 NM_010274 ENSMUSG00000026827 Gpd2 AA408484|AI448216|AU021455|AW494132|GPDH|Gdm1|Gpd-m|Gpdh-m|TISP38 glycerol phosphate dehydrogenase 2, mitochondrial protein-coding 0.025000 0.432836 Oct4_nocontrol_ChIP_peaks_unique-239 chr2 144217316 144217516 + -1.27890 NA Intergenic Intergenic -28126 NR_136884 433481 Mm.330630 NR_136884 ENSMUSG00000074758 Gm5535 EG433481 predicted gene 5535 ncRNA 0.015000 0.472637 -19(TCTTTGTCATGCACAA,+,0.00) merged_common-156 chr9 40348685 40348885 + -1.27890 NA intron (NM_001357617, intron 2 of 20) intron (NM_001357617, intron 2 of 20) -2540 NM_001357623 235283 Mm.138434 NM_172768 ENSMUSG00000040111 Gramd1b 3222402H23|A930008A22Rik|AI593249|mKIAA1201 GRAM domain containing 1B protein-coding 0.005000 0.388060 -7(CATACATATTCATG,+,0.00),-7(CATACATATTCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-41 chr10 30645516 30645716 + -1.27890 NA TTS (NM_001358841) TTS (NM_001358841) 10251 NM_001111267 211329 Mm.297903 NM_172495 ENSMUSG00000039697 Ncoa7 9030406N13Rik nuclear receptor coactivator 7 protein-coding 0.000000 0.333333 ePOU_nocontrol_ChIP_peaks_unique-103 chr18 35771441 35771641 + -1.27890 NA promoter-TSS (NM_019912) promoter-TSS (NM_019912) -18 NM_019912 56550 Mm.180052 NM_019912 ENSMUSG00000091896 Ube2d2a 1500034D03Rik|Ubc2e|Ube2d2|ubc4 ubiquitin-conjugating enzyme E2D 2A protein-coding 0.125000 0.805970 Oct4_nocontrol_ChIP_peaks_unique-53 chr10 81627391 81627591 + -1.27890 NA promoter-TSS (NM_001163430) promoter-TSS (NM_001163430) 117 NM_181586 50721 Mm.25643 NM_181586 ENSMUSG00000034748 Sirt6 2810449N18Rik|AI043036|Sir2l6 sirtuin 6 protein-coding 0.100000 0.616915 merged_common-152 chr8 112711577 112711777 + -1.28701 NA intron (NM_130457, intron 3 of 23) RLTR17B_Mm|LTR|ERVK 141634 NM_130457 170571 Mm.209232 NM_130457 ENSMUSG00000031772 Cntnap4 Caspr4|E130114F09Rik contactin associated protein-like 4 protein-coding 0.000000 0.253731 -20(CATGCATATGTATG,+,0.00),-20(CATGCATATGTATG,-,0.00),6(TATGCATATATATA,-,0.00),34(TATGCATATGTATA,+,0.00),34(TATGCATATGTATA,-,0.00) 63(ATTTGCATATAAATGC,-,0.00) merged_common-57 chr15 84171534 84171734 + -1.28701 NA intron (NM_054088, intron 2 of 7) intron (NM_054088, intron 2 of 7) 3364 NR_105816 102466642 NR_105816 ENSMUSG00000098882 Mir6392 Gm27431|mmu-mir-6392 microRNA 6392 ncRNA 0.000000 0.427861 -23(CCTCAATATGCATG,+,0.00) merged_common-65 chr17 27611007 27611207 + -1.29873 NA intron (NM_019837, intron 1 of 4) intron (NM_019837, intron 1 of 4) 11857 NM_001291046 56409 Mm.144699 NM_019837 ENSMUSG00000024213 Nudt3 1110011B09Rik|AA960325|Dipp|Dipp1 nudix (nucleotide diphosphate linked moiety X)-type motif 3 protein-coding 0.015000 0.437811 ePOU_nocontrol_ChIP_peaks_unique-109 chr19 33011114 33011314 + -1.30677 NA Intergenic Intergenic -145898 NR_039552 100628575 NR_039552 ENSMUSG00000106278 Mir3970 mmu-mir-3970|mu-mir-3970 microRNA 3970 ncRNA 0.020000 0.432836 Oct4_nocontrol_ChIP_peaks_unique-48 chr10 59558688 59558888 + -1.30677 NA intron (NM_001033259, intron 1 of 7) intron (NM_001033259, intron 1 of 7) 57904 NM_001033259 215999 Mm.296470 NM_001033259 ENSMUSG00000009647 Mcu 2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64 mitochondrial calcium uniporter protein-coding 0.015000 0.512438 15(GCATTACCATGATAAT,+,0.00),17(ATTACCATGATAATCA,-,0.00) merged_common-131 chr4 149426524 149426724 + -1.30677 NA promoter-TSS (NM_022022) promoter-TSS (NM_022022) 7 NM_022022 63958 Mm.415260 NM_022022 ENSMUSG00000028960 Ube4b 4930551I19Rik|4933406G05Rik|AU014668|D4Bwg0973e|UFD2|UFD2a|Ufd2p|mKIAA0684 ubiquitination factor E4B protein-coding 0.080000 0.601990 -51(CAAGAATTATTCATC,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-110 chr19 36208172 36208372 + -1.30677 NA Intergenic Intergenic -88428 NM_013468 107765 Mm.10279 NM_013468 ENSMUSG00000024803 Ankrd1 Alrp|CARP|Crap|MARP1 ankyrin repeat domain 1 (cardiac muscle) protein-coding 0.005000 0.427861 85(ATTAAAAAAAAAAAAA,-,0.00) merged_common-9 chr1 143477004 143477204 + -1.30677 NA Intergenic B3|SINE|B2 -163593 NM_020025 26878 Mm.285580 NM_020025 ENSMUSG00000033849 B3galt2 - UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 protein-coding 0.010000 0.422886 -77(ATTGCATATGAATG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-154 chr4 53159949 53160149 + -1.30677 NA promoter-TSS (NM_013454) promoter-TSS (NM_013454) -154 NM_013454 11303 Mm.277376 NM_013454 ENSMUSG00000015243 Abca1 ABC-1|Abc1 ATP-binding cassette, sub-family A (ABC1), member 1 protein-coding 0.070000 0.626866 Oct4_nocontrol_ChIP_peaks_unique-80 chr12 21373504 21373704 + -1.30677 NA promoter-TSS (NR_102380) promoter-TSS (NR_102380) 28 NR_120376 11491 Mm.27681 NM_009615 ENSMUSG00000052593 Adam17 CD156b|Tace a disintegrin and metallopeptidase domain 17 protein-coding 0.105000 0.686567 ePOU_nocontrol_ChIP_peaks_unique-49 chr11 121777910 121778110 + -1.30677 NA Intergenic Intergenic -52208 NM_029049 74675 Mm.61213 NM_029049 ENSMUSG00000039198 Ptchd3 4930451E13Rik|4933440L20Rik|RNDEu-3 patched domain containing 3 protein-coding 0.000000 0.487562 Oct4_nocontrol_ChIP_peaks_unique-296 chr6 14345339 14345539 + -1.30677 NA Intergenic Intergenic 409835 NM_080464 140491 Mm.209429 NM_080464 ENSMUSG00000042717 Ppp1r3a GM|RG1|RGL protein phosphatase 1, regulatory subunit 3A protein-coding 0.000000 0.338308 Oct4_nocontrol_ChIP_peaks_unique-308 chr6 117665687 117665887 + -1.30677 NA Intergenic Intergenic 85982 NR_045731 72263 Mm.443289 NR_045731 ENSMUSG00000099869 1700030F04Rik - RIKEN cDNA 1700030F04 gene ncRNA 0.010000 0.447761 -22(TTTGCATATGCAAG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-183 chr19 10847131 10847331 + -1.30677 NA intron (NM_023044, intron 1 of 7) RLTR17B_Mm|LTR|ERVK 4687 NM_023044 65221 Mm.27387 NM_023044 ENSMUSG00000024737 Slc15a3 Ci1|cI-1 solute carrier family 15, member 3 protein-coding 0.020000 0.437811 70(AATACATAATGCATG,+,0.00),70(AATACATAATGCATG,-,0.00) 16(CATGCATATGCACA,+,0.00),16(CATGCATATGCACA,-,0.00) merged_common-100 chr2 125577907 125578107 + -1.30677 NA intron (NM_001081091, intron 21 of 27) intron (NM_001081091, intron 21 of 27) 47106 NM_001081091 99100 Mm.330545 NM_001081091 ENSMUSG00000068394 Cep152 AI851464|mKIAA0912 centrosomal protein 152 protein-coding 0.010000 0.407960 -35(GATGAATTTTGCATT,+,0.00),-35(GATGAATTTTGCATT,-,0.00) 44(ATCTAAATAAGAATGT,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-27 chr10 111476646 111476846 + -1.30677 NA intron (NR_152558, intron 1 of 14) intron (NR_152558, intron 1 of 14) 3519 NR_152558 53605 Mm.290407 NM_015781 ENSMUSG00000058799 Nap1l1 AA407126|AI256722|D10Ertd68e|NAP-1 nucleosome assembly protein 1-like 1 protein-coding 0.000000 0.383085 Oct4_nocontrol_ChIP_peaks_unique-171 chr17 90244471 90244671 + -1.30677 NA intron (NM_001346957, intron 15 of 18) intron (NM_001346957, intron 15 of 18) -156203 NM_001346962 18189 Mm.478418 NM_020252 ENSMUSG00000024109 Nrxn1 1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578 neurexin I protein-coding 0.010000 0.437811 -58(ATCTGCATAAGAATTC,-,0.00),-32(ATCTCCCTGACAAAGA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-206 chr8 68793901 68794101 + -1.30677 NA promoter-TSS (NM_001293792) promoter-TSS (NM_001293792) 72 NM_001293791 70885 Mm.252421 NM_027590 ENSMUSG00000031864 Ints10 4921521J11Rik|AI462004 integrator complex subunit 10 protein-coding 0.050000 0.641791 merged_common-37 chr13 72298882 72299082 + -1.30677 NA Intergenic Intergenic 329582 NR_030701 328287 Mm.235072 NR_030701 Gm20554 D430050G20 predicted gene, 20554 ncRNA 0.020000 0.383085 -27(CATGAAATATGCATG,+,0.00),-27(CATGAAATATGCATG,-,0.00) -21(ATATGCATGATAATGT,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-32 chr11 6267766 6267966 + -1.30677 NA promoter-TSS (NM_026538) promoter-TSS (NM_026538) -137 NM_026538 52513 Mm.29810 NM_026538 ENSMUSG00000004393 Ddx56 2600001H07Rik|D11Ertd619e|Noh61 DEAD (Asp-Glu-Ala-Asp) box polypeptide 56 protein-coding 0.050000 0.567164 merged_common-126 chr4 123740352 123740552 + -1.30677 NA intron (NM_023423, intron 2 of 4) intron (NM_023423, intron 2 of 4) 9847 NM_023423 68050 Mm.27903 NM_023423 ENSMUSG00000023075 Akirin1 6330407G11Rik akirin 1 protein-coding 0.010000 0.383085 14(AATTTATCATTCATAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-64 chr13 114022354 114022554 + -1.30677 NA intron (NM_172595, intron 4 of 4) L1MA4|LINE|L1 129138 NR_045836 319803 Mm.386896 NM_177004 ENSMUSG00000114213 A430090L17Rik - RIKEN cDNA A430090L17 gene ncRNA 0.010000 0.378109 -70(CTATTGTCTTGCAAAC,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-54 chr10 83817759 83817959 + -1.30677 NA Intergenic Intergenic 94994 NM_001145198 69784 Mm.271188 NM_001145198 ENSMUSG00000087651 1500009L16Rik 2700050C19Rik|OCC-1 RIKEN cDNA 1500009L16 gene protein-coding 0.005000 0.502488 Oct4_nocontrol_ChIP_peaks_unique-202 chr2 44927201 44927401 + -1.30677 NA promoter-TSS (NM_001362987) promoter-TSS (NM_001362987) -65 NM_001362987 227835 Mm.314312 NM_172662 ENSMUSG00000036890 Gtdc1 E330008O22Rik glycosyltransferase-like domain containing 1 protein-coding 0.145000 0.810945 Oct4_nocontrol_ChIP_peaks_unique-260 chr3 144124446 144124646 + -1.30677 NA Intergenic Intergenic 77786 NM_001161770 16911 Mm.29187 NM_010723 ENSMUSG00000028266 Lmo4 A730077C12Rik|Crp3|Etohi4 LIM domain only 4 protein-coding 0.010000 0.512438 18(GCATTTTGATGCAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-303 chr6 61180527 61180727 + -1.30677 NA 5' UTR (NM_183310, exon 1 of 11) 5' UTR (NM_183310, exon 1 of 11) 183 NR_040287 100504262 Mm.438066 NR_040287 A730020E08Rik - RIKEN cDNA A730020E08 gene ncRNA 0.125000 0.746269 ePOU_nocontrol_ChIP_peaks_unique-229 chrX 144180709 144180909 + -1.30677 NA Intergenic Intergenic 27114 NM_001354493 319764 Mm.208482 NM_001354493 ENSMUSG00000085139 A730046J19Rik SERTM2 RIKEN cDNA A730046J19 gene protein-coding 0.010000 0.343284 -46(CTTTTCATATGTAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-350 chr9 29022543 29022743 + -1.30677 NA intron (NM_001357597, intron 4 of 8) intron (NM_001357597, intron 4 of 8) 390042 NM_001357601 235106 Mm.283138 NM_172290 ENSMUSG00000059974 Ntm 6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390 neurotrimin protein-coding 0.005000 0.278607 67(TATGAATATGCATA,+,0.00),67(TATGAATATGCATA,-,0.00),73(TATGCATATGCAAA,+,0.00),73(TATGCATATGCAAA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-4 chr1 14357523 14357723 + -1.30677 NA Intergenic Intergenic -47424 NM_010164 14048 Mm.250185 NM_010164 ENSMUSG00000025932 Eya1 bor EYA transcriptional coactivator and phosphatase 1 protein-coding 0.005000 0.348259 -34(AAATTATTATGCAAAT,+,0.00),-20(ATATGCATGAATAAGA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-13 chr1 106190162 106190362 + -1.30677 NA intron (NM_133821, intron 1 of 16) RMER30|DNA|hAT-Charlie 18393 NM_133821 98432 Mm.24115 NM_133821 ENSMUSG00000044340 Phlpp1 AI836256|Phlpp|Plekhe1|SCOP|mKIAA0606 PH domain and leucine rich repeat protein phosphatase 1 protein-coding 0.005000 0.298507 merged_common-150 chr8 91313266 91313466 + -1.30677 NA promoter-TSS (NM_011936) promoter-TSS (NM_011936) -144 NM_173431 244585 Mm.324592 NM_173431 ENSMUSG00000033282 Rpgrip1l 1700047E16Rik|4931437C01|Ftm|Nphp8 Rpgrip1-like protein-coding 0.075000 0.587065 Oct4_nocontrol_ChIP_peaks_unique-11 chr1 51398008 51398208 + -1.30677 NA Intergenic Intergenic -64329 NR_045151 442821 Mm.118030 NR_045151 ENSMUSG00000101799 9330175M20Rik - RIKEN cDNA 9330175M20 gene ncRNA 0.005000 0.313433 0(GCATTTTCATTTTGAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-123 chr14 77717041 77717241 + -1.30677 NA intron (NM_172813, intron 18 of 18) RSINE1|SINE|B4 81827 NR_157389 380920 Mm.297771 NM_001033440 Gm1587 - predicted gene 1587 ncRNA 0.015000 0.447761 Oct4_nocontrol_ChIP_peaks_unique-282 chr5 36115669 36115869 + -1.30677 NA intron (NM_030889, intron 3 of 26) intron (NM_030889, intron 3 of 26) -88252 NM_175249 76943 Mm.44242 NM_175249 ENSMUSG00000043430 Psapl1 2310020A21Rik prosaposin-like 1 protein-coding 0.020000 0.492537 10(CATGAATATGCATG,+,0.00),10(CATGAATATGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-85 chr12 40358223 40358423 + -1.30677 NA intron (NM_172575, intron 5 of 12) intron (NM_172575, intron 5 of 12) 87467 NM_178845 246196 Mm.26852 NM_172575 ENSMUSG00000055917 Zfp277 2410017E24Rik|NIRF4 zinc finger protein 277 protein-coding 0.000000 0.442786 -55(CATGCATATTCAAA,+,0.00),-55(CATGCATATTCAAA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-335 chr8 86864040 86864240 + -1.30677 NA intron (NM_030563, intron 1 of 6) B3A|SINE|B2 21118 NM_030563 80750 Mm.25117 NM_030563 ENSMUSG00000031652 N4bp1 AI481586|C81621 NEDD4 binding protein 1 protein-coding 0.005000 0.338308 ePOU_nocontrol_ChIP_peaks_unique-134 chr3 21963799 21963999 + -1.30677 NA Intergenic Intergenic -112753 NM_030732 81004 Mm.202966 NM_030732 ENSMUSG00000027630 Tbl1xr1 8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1 transducin (beta)-like 1X-linked receptor 1 protein-coding 0.000000 0.437811 Oct4_nocontrol_ChIP_peaks_unique-245 chr3 14862281 14862481 + -1.30677 NA Intergenic Intergenic -1157 NM_007606 12350 Mm.300 NM_007606 ENSMUSG00000027559 Car3 BB219044|Ca3|Car-3 carbonic anhydrase 3 protein-coding 0.010000 0.343284 63(CCTTTGTCATGCACAA,+,0.00) merged_common-134 chr5 101535268 101535468 + -1.30677 NA Intergenic Intergenic 129343 NM_144955 18096 Mm.193072 NM_144955 ENSMUSG00000035187 Nkx6-1 NKX6A|Nkx6.1 NK6 homeobox 1 protein-coding 0.005000 0.373134 -54(TATGAATATTCATG,+,0.00),-54(TATGAATATTCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-230 chr2 124594470 124594670 + -1.30677 NA intron (NM_001290997, intron 5 of 20) RLTR17B_Mm|LTR|ERVK -15726 NM_172537 214968 Mm.330536 NM_172537 ENSMUSG00000027200 Sema6d 1110067B02Rik|AA409156|D330011G23|mKIAA1479 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D protein-coding 0.000000 0.328358 -23(TGTGCATATGCATA,+,0.00),-23(TGTGCATATGCATA,-,0.00),58(CATATATATGCATA,+,0.00),64(TATGCATATACATT,+,0.00),64(TATGCATATACATT,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-38 chr11 69124419 69124619 + -1.30677 NA Intergenic Intergenic -1858 NM_011786 23801 Mm.41989 NM_011786 ENSMUSG00000020892 Aloxe3 e-LOX-3|eLOX-3 arachidonate lipoxygenase 3 protein-coding 0.015000 0.288557 55(TATTTATTATGTTGAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-215 chr8 120498943 120499143 + -1.30677 NA intron (NM_198671, intron 1 of 15) intron (NM_198671, intron 1 of 15) 10177 NM_198671 382034 Mm.334856 NM_198671 ENSMUSG00000031822 Gse1 2210013I18Rik|mKIAA0182 genetic suppressor element 1, coiled-coil protein protein-coding 0.030000 0.542289 -34(CATGAATATTCATG,+,0.00),-34(CATGAATATTCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-310 chr6 127466894 127467094 + -1.30677 NA intron (NM_001346512, intron 1 of 5) intron (NM_001346512, intron 1 of 5) 13367 NM_001362187 101187 Mm.110818 NM_181402 ENSMUSG00000037997 Parp11 5330431N24Rik|AI851877|ARTD11|HIN1L|PARP-11 poly (ADP-ribose) polymerase family, member 11 protein-coding 0.010000 0.462687 merged_common-107 chr3 100189801 100190001 + -1.30677 NA intron (NR_104341, intron 8 of 13) intron (NR_104341, intron 8 of 13) 27438 NM_010269 14547 Mm.279228 NM_010269 ENSMUSG00000027865 Gdap2 C77050|D3Ertd801e ganglioside-induced differentiation-associated-protein 2 protein-coding 0.015000 0.378109 Oct4_nocontrol_ChIP_peaks_unique-125 chr14 98073007 98073207 + -1.30677 NA intron (NM_001038610, intron 1 of 10) intron (NM_001038610, intron 1 of 10) 96658 NM_007826 13134 Mm.320593 NM_007826 ENSMUSG00000055639 Dach1 Dac|Dach dachshund family transcription factor 1 protein-coding 0.015000 0.393035 2(CATTAAAATGCATT,+,0.00) -3(ATCTGCATTAAAATGC,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-72 chr14 77239758 77239958 + -1.30677 NA intron (NM_172813, intron 1 of 18) intron (NM_172813, intron 1 of 18) 83095 NM_172813 239188 Mm.441158 NM_172813 ENSMUSG00000022012 Enox1 B230207J08|D230005D02Rik ecto-NOX disulfide-thiol exchanger 1 protein-coding 0.000000 0.318408 79(TATGCATATCCATG,+,0.00),79(TATGCATATCCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-31 chr1 194562630 194562830 + -1.30677 NA Intergenic Intergenic -57099 NM_008882 18845 Mm.2251 NM_008882 ENSMUSG00000026640 Plxna2 2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463 plexin A2 protein-coding 0.000000 0.407960 -5(ATAAGCATGCCAAAAA,-,0.00) merged_common-97 chr2 117281373 117281573 + -1.30677 NA 3' UTR (NM_011246, exon 17 of 17) 3' UTR (NM_011246, exon 17 of 17) 31734 NM_026620 68215 Mm.219389 NM_026620 ENSMUSG00000027349 Fam98b 2610510H03Rik family with sequence similarity 98, member B protein-coding 0.010000 0.373134 ePOU_nocontrol_ChIP_peaks_unique-178 chr6 76965151 76965351 + -1.30677 NA intron (NM_145732, intron 13 of 18) intron (NM_145732, intron 13 of 18) -277226 NR_155299 74342 Mm.292568 NM_028880 ENSMUSG00000060780 Lrrtm1 4632401D06Rik|AW125451 leucine rich repeat transmembrane neuronal 1 protein-coding 0.015000 0.363184 ePOU_nocontrol_ChIP_peaks_unique-56 chr12 91518612 91518812 + -1.30677 NA intron (NM_001113404, intron 7 of 8) MER53|DNA|hAT 70937 NM_031391 83602 Mm.275728 NM_031391 ENSMUSG00000020962 Gtf2a1 6330549H03Rik|AA536742|AA959775|AW060250|TfIIAa/b|Tfiia1 general transcription factor II A, 1 protein-coding 0.010000 0.368159 ePOU_nocontrol_ChIP_peaks_unique-58 chr12 116280892 116281092 + -1.30677 NA promoter-TSS (NM_028731) promoter-TSS (NM_028731) -230 NM_028731 52635 Mm.273755 NM_028731 ENSMUSG00000021171 Esyt2 2410017M09Rik|4921504I16Rik|CHR2SYT|D12Ertd551e|Fam62b extended synaptotagmin-like protein 2 protein-coding 0.100000 0.656716 ePOU_nocontrol_ChIP_peaks_unique-199 chr7 145173263 145173463 + -1.30677 NA Intergenic Intergenic 34756 NM_001369202 100040049 Mm.102235 NM_001369202 ENSMUSG00000109305 Smim38 1810010D01Rik|Gm2572 small integral membrane protein 38 protein-coding 0.030000 0.601990 ePOU_nocontrol_ChIP_peaks_unique-39 chr11 70432543 70432743 + -1.30677 NA promoter-TSS (NM_001271360) promoter-TSS (NM_001271360) 63 NM_001271358 216869 Mm.203747 NM_145429 ENSMUSG00000060216 Arrb2 AI326910|AW122872|Arr3 arrestin, beta 2 protein-coding 0.140000 0.746269 ePOU_nocontrol_ChIP_peaks_unique-128 chr2 135230179 135230379 + -1.30677 NA intron (NM_001145830, intron 4 of 31) intron (NM_001145830, intron 4 of 31) -14663 NR_040517 78805 Mm.78702 NR_040517 ENSMUSG00000085247 4930545L23Rik - RIKEN cDNA 4930545L23 gene ncRNA 0.010000 0.378109 ePOU_nocontrol_ChIP_peaks_unique-79 chr15 80850202 80850402 + -1.30677 NA intron (NM_177124, intron 1 of 21) intron (NM_177124, intron 1 of 21) 51692 NM_177124 213988 Mm.131328 NM_144812 ENSMUSG00000047888 Tnrc6b 2700090M07Rik|A730065C02Rik|AI848765|D230019K20Rik trinucleotide repeat containing 6b protein-coding 0.015000 0.447761 merged_common-148 chr8 25455169 25455369 + -1.30677 NA Intergenic MTC-int|LTR|ERVL-MaLR -63490 NM_010206 14182 Mm.265716 NM_010206 ENSMUSG00000031565 Fgfr1 AW208770|Eask|FGFR-I|FLG|Fgfr-1|Flt-2|Fr1|Hspy|MFR|bFGF-R-1|c-fgr fibroblast growth factor receptor 1 protein-coding 0.000000 0.323383 30(ATCAACATCACAATAT,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-67 chr11 58322948 58323148 + -1.30677 NA promoter-TSS (NM_001256518) promoter-TSS (NM_001256518) 65 NM_001256518 319475 Mm.72124 NM_178761 ENSMUSG00000049755 Zfp672 4930488P06Rik|4930511N19Rik|Znf672 zinc finger protein 672 protein-coding 0.095000 0.706468 Oct4_nocontrol_ChIP_peaks_unique-309 chr6 124421442 124421642 + -1.30677 NA Intergenic L1MC2|LINE|L1 -5687 NM_001360570 19305 Mm.22418 NM_008995 ENSMUSG00000005069 Pex5 AW212715|ESTM1|PTS1-BP|PTS1R|PXR1P|Pxr1|X83306 peroxisomal biogenesis factor 5 protein-coding 0.000000 0.323383 -92(TATACATATGTATG,+,0.00),-92(TATACATATGTATG,-,0.00) 70(TTCTACATGAGAAAGA,-,0.00) merged_common-165 chrX 102577039 102577239 + -1.30677 NA intron (NM_173021, intron 14 of 31) Lx10|LINE|L1 67107 NM_008832 18679 Mm.212889 NM_008832 ENSMUSG00000034055 Phka1 5330411D17|9830108K24Rik|Phka phosphorylase kinase alpha 1 protein-coding 0.000000 0.283582 17(CATGCATATGCATA,+,0.00),17(CATGCATATGCATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-251 chr3 88571979 88572179 + -1.30677 NA Intergenic RLTR12E|LTR|ERVK -7529 NM_001356319 66256 Mm.7091 NM_025448 ENSMUSG00000041355 Ssr2 1500032E05Rik|AI315033|AU020133|SSR-beta|TLAP|TRAPB|TRAPbeta signal sequence receptor, beta protein-coding 0.000000 0.432836 ePOU_nocontrol_ChIP_peaks_unique-190 chr7 83434395 83434595 + -1.30677 NA Intergenic Intergenic -150436 NM_177695 233424 Mm.486619 NM_177695 ENSMUSG00000038540 Tmc3 9030203A06 transmembrane channel-like gene family 3 protein-coding 0.020000 0.432836 48(CTTTTGTGTTGTAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-199 chr2 18056685 18056885 + -1.30677 NA intron (NR_149308, intron 1 of 9) CpG 1057 NR_149308 17354 Mm.209175 NM_010804 ENSMUSG00000026743 Mllt10 Af10|B130021D15Rik|D630001B22Rik|mKIAA4140 myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10 protein-coding 0.135000 0.845771 Oct4_nocontrol_ChIP_peaks_unique-131 chr15 32291040 32291240 + -1.30677 NA intron (NM_009154, intron 1 of 22) intron (NM_009154, intron 1 of 22) 46327 NM_009154 20356 Mm.260374 NM_009154 ENSMUSG00000022231 Sema5a 5930434A13|9130201M22Rik|AI464145|Semaf|semF sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5A protein-coding 0.015000 0.477612 Oct4_nocontrol_ChIP_peaks_unique-370 chrX 101169859 101170059 + -1.30677 NA intron (NM_001110311, intron 4 of 5) intron (NM_001110311, intron 4 of 5) 52604 NM_001110310 55988 Mm.206949 NM_018875 ENSMUSG00000046032 Snx12 2610001F05Rik|AW045757|SDP8 sorting nexin 12 protein-coding 0.010000 0.393035 ePOU_nocontrol_ChIP_peaks_unique-108 chr19 23140896 23141096 + -1.30677 NA promoter-TSS (NM_010638) promoter-TSS (NM_010638) -230 NM_010638 16601 Mm.291595 NM_010638 ENSMUSG00000033863 Klf9 2310051E17Rik|AA589643|BTEB-1|Bteb1|Gm9971 Kruppel-like factor 9 protein-coding 0.145000 0.701493 merged_common-39 chr13 91370985 91371185 + -1.30677 NA non-coding (NR_045161, exon 3 of 3) non-coding (NR_045161, exon 3 of 3) 17000 NR_045161 320297 Mm.375866 NR_045161 ENSMUSG00000097182 A830009L08Rik - RIKEN cDNA A830009L08 gene ncRNA 0.090000 0.646766 Oct4_nocontrol_ChIP_peaks_unique-74 chr11 88419593 88419793 + -1.30677 NA intron (NM_054043, intron 7 of 13) intron (NM_054043, intron 7 of 13) 66920 NR_039545 100628571 NR_039545 ENSMUSG00000092985 Mir378b mir-378b|mmu-mir-378b microRNA 378b ncRNA 0.015000 0.378109 -32(ACTGAATATTCATC,+,0.00),-32(ACTGAATATTCATC,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-364 chr9 99152729 99152929 + -1.30677 NA Intergenic Intergenic -12618 NM_029094 74769 Mm.213128 NM_029094 ENSMUSG00000032462 Pik3cb 1110001J02Rik|AI447572|p110beta phosphatidylinositol-4,5-bisphosphate 3-kinase catalytic subunit beta protein-coding 0.005000 0.412935 ePOU_nocontrol_ChIP_peaks_unique-212 chr8 102691642 102691842 + -1.30677 NA intron (NM_009866, intron 2 of 12) intron (NM_009866, intron 2 of 12) 93369 NM_009866 12552 Mm.1571 NM_009866 ENSMUSG00000031673 Cdh11 Cad11|OSF-4 cadherin 11 protein-coding 0.000000 0.368159 65(ACTTTATTATGAAAAG,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-152 chr4 40143212 40143412 + -1.30677 NA promoter-TSS (NM_007386) promoter-TSS (NM_007386) 47 NM_007386 11428 Mm.331547 NM_007386 ENSMUSG00000028405 Aco1 Aco-1|Irebp|Irp1 aconitase 1 protein-coding 0.065000 0.681592 Oct4_nocontrol_ChIP_peaks_unique-225 chr2 116019039 116019239 + -1.30677 NA intron (NM_001136072, intron 7 of 12) intron (NM_001136072, intron 7 of 12) 45480 NM_001346055 17536 Mm.247566 NM_010825 ENSMUSG00000027210 Meis2 A430109D20Rik|Mrg1|Stra10 Meis homeobox 2 protein-coding 0.015000 0.388060 merged_common-78 chr18 56864873 56865073 + -1.30677 NA intron (NM_177115, intron 1 of 4) Lx8b|LINE|L1 60575 NM_177115 320253 Mm.312623 NM_177115 ENSMUSG00000032656 March3 6330411I15Rik|A530081L18Rik|AI843639|MARCH-III membrane-associated ring finger (C3HC4) 3 protein-coding 0.010000 0.407960 Oct4_nocontrol_ChIP_peaks_unique-13 chr1 52763748 52763948 + -1.30677 NA Intergenic Intergenic -36490 NM_001357464 98682 Mm.491173 NM_133829 ENSMUSG00000041439 Mfsd6 2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2 major facilitator superfamily domain containing 6 protein-coding 0.000000 0.248756 33(TATACATTATATATG,-,0.00) -25(TGTGAATATGTATG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-130 chr2 155381941 155382141 + -1.30677 NA intron (NM_178111, intron 1 of 3) CpG 185 NM_178111 68728 Mm.293605 NM_178111 ENSMUSG00000038375 Trp53inp2 1110029F20Rik|Tp53inp2 transformation related protein 53 inducible nuclear protein 2 protein-coding 0.100000 0.721393 Oct4_nocontrol_ChIP_peaks_unique-167 chr17 51747858 51748058 + -1.30677 NA intron (NM_001357640, intron 8 of 10) intron (NM_001357640, intron 8 of 10) 64096 NM_001163630 20230 Mm.311655 NM_009122 ENSMUSG00000023927 Satb1 2610306G12Rik|AW413156 special AT-rich sequence binding protein 1 protein-coding 0.005000 0.308458 -74(TATGCATATGTATA,+,0.00),-74(TATGCATATGTATA,-,0.00) 35(ATTTAAAAAAAAATAG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-273 chr4 116053985 116054185 + -1.30677 NA promoter-TSS (NM_001369075) promoter-TSS (NM_001369075) -274 NM_028142 72181 Mm.282560 NM_028142 ENSMUSG00000028706 Nsun4 2310010O12Rik|2810405F18Rik|AI507900|Shtap NOL1/NOP2/Sun domain family, member 4 protein-coding 0.025000 0.447761 Oct4_nocontrol_ChIP_peaks_unique-248 chr3 59307524 59307724 + -1.30677 NA intron (NM_177855, intron 42 of 43) intron (NM_177855, intron 42 of 43) 36632 NM_001162884 242050 Mm.228086 NM_001162884 ENSMUSG00000036334 Igsf10 6530405F15Rik|9030224D03|AA409708|AA536958|AI414626|Adlican2|CMF608 immunoglobulin superfamily, member 10 protein-coding 0.005000 0.328358 Oct4_nocontrol_ChIP_peaks_unique-278 chr4 149752195 149752395 + -1.30677 NA intron (NM_027460, intron 5 of 6) intron (NM_027460, intron 5 of 6) -14227 NM_001284270 230917 Mm.266704 NM_177672 ENSMUSG00000044700 Tmem201 AV028368|D4Ertd429e|Net5|Samp1 transmembrane protein 201 protein-coding 0.015000 0.552239 27(TCTGCATATGCATA,+,0.00),27(TCTGCATATGCATA,-,0.00) merged_common-62 chr16 37777979 37778179 + -1.30677 NA intron (NM_008047, intron 2 of 10) intron (NM_008047, intron 2 of 10) 1024 NM_008047 14314 Mm.182434 NM_008047 ENSMUSG00000022816 Fstl1 AI316791|AW107808|Fstl|TSC-36 follistatin-like 1 protein-coding 0.000000 0.437811 Oct4_nocontrol_ChIP_peaks_unique-348 chr9 13777829 13778029 + -1.30677 NA intron (NM_023858, intron 1 of 14) (TTCTC)n|Simple_repeat|Simple_repeat 28748 NR_024025 77116 Mm.210405 NM_023858 ENSMUSG00000031918 Mtmr2 6030445P13Rik myotubularin related protein 2 protein-coding 0.005000 0.402985 71(ATAAGCATTACAATGC,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-244 chr3 5755257 5755457 + -1.30677 NA Intergenic Intergenic -179109 NM_001163306 19302 Mm.132336 NM_008994 ENSMUSG00000040374 Pex2 D3Ertd138e|PAF-1|PMP35|Pxmp3 peroxisomal biogenesis factor 2 protein-coding 0.005000 0.363184 -77(ACTGCATATTCATA,+,0.00),-77(ACTGCATATTCATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-104 chr13 45593217 45593417 + -1.30677 NA intron (NM_001199304, intron 5 of 6) intron (NM_001199304, intron 5 of 6) 85873 NM_025508 66355 Mm.290802 NM_025508 ENSMUSG00000000253 Gmpr 2310004P21Rik|AV028449|GMPR 1 guanosine monophosphate reductase protein-coding 0.000000 0.383085 44(TATGCATATGCACA,+,0.00),44(TATGCATATGCACA,-,0.00),50(TATGCACATTCATG,-,0.00),60(CATGCATATGCATG,+,0.00),60(CATGCATATGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-242 chr2 168214191 168214391 + -1.30677 NA intron (NM_010072, intron 6 of 8) intron (NM_010072, intron 6 of 8) -7179 NM_001310088 11538 Mm.201322 NM_009628 ENSMUSG00000051149 Adnp AA589558|mKIAA0784 activity-dependent neuroprotective protein protein-coding 0.005000 0.417910 17(ATTAGCATTTCAAAGG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-193 chr7 110371279 110371479 + -1.30677 NA intron (NM_177324, intron 21 of 40) intron (NM_177324, intron 21 of 40) 149676 NM_009302 20947 Mm.334144 NM_009302 ENSMUSG00000031015 Swap70 70kDa|AV235546 SWA-70 protein protein-coding 0.000000 0.378109 ePOU_nocontrol_ChIP_peaks_unique-97 chr18 3507850 3508050 + -1.30677 NA promoter-TSS (NM_026505) promoter-TSS (NM_026505) -7 NM_026505 68010 Mm.284863 NM_026505 ENSMUSG00000024232 Bambi 2610003H06Rik BMP and activin membrane-bound inhibitor protein-coding 0.120000 0.701493 Oct4_nocontrol_ChIP_peaks_unique-182 chr19 6140674 6140874 + -1.30677 NA intron (NM_019722, intron 1 of 4) CpG 363 NM_019722 56327 Mm.21071 NM_019722 ENSMUSG00000024944 Arl2 2610009M23Rik|AI115441|AW553335 ADP-ribosylation factor-like 2 protein-coding 0.080000 0.691542 Oct4_nocontrol_ChIP_peaks_unique-23 chr1 126437393 126437593 + -1.30677 NA intron (NM_172484, intron 2 of 14) intron (NM_172484, intron 2 of 14) 55434 NM_172484 210356 Mm.377234 NM_172484 ENSMUSG00000049690 Nckap5 8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5 NCK-associated protein 5 protein-coding 0.030000 0.452736 Oct4_nocontrol_ChIP_peaks_unique-347 chr9 9157733 9157933 + -1.30677 NA intron (NM_027823, intron 2 of 22) intron (NM_027823, intron 2 of 22) -78455 NR_045754 100579151 Mm.412450 NR_045754 ENSMUSG00000085253 Gm16833 - predicted gene, 16833 ncRNA 0.010000 0.353234 30(TGATTATAATGTAAAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-111 chr19 53600066 53600266 + -1.30677 NA promoter-TSS (NM_007790) promoter-TSS (NM_007790) -230 NM_007790 13006 Mm.14910 NM_007790 ENSMUSG00000024974 Smc3 Bamacan|Cspg6|HCAP|Mmip1|SMC-3|SmcD structural maintenance of chromosomes 3 protein-coding 0.095000 0.631841 ePOU_nocontrol_ChIP_peaks_unique-137 chr3 87974362 87974562 + -1.30677 NA intron (NM_016701, intron 2 of 3) intron (NM_016701, intron 2 of 3) 3369 NM_016701 18008 Mm.331129 NM_016701 ENSMUSG00000004891 Nes AA166324|C78523|ESTM46|Ifaprc2|Marc2|RC2 nestin protein-coding 0.015000 0.577114 34(ATTAGCATGAGAATCG,-,0.00) merged_common-104 chr3 28523503 28523703 + -1.30677 NA intron (NM_001163009, intron 4 of 30) intron (NM_001163009, intron 4 of 30) 103660 NR_130342 100628591 NR_130342 ENSMUSG00000092990 Mir466q Mir446q|mmu-mir-466q|mu-mir-446q microRNA 466q ncRNA 0.005000 0.313433 Oct4_nocontrol_ChIP_peaks_unique-220 chr2 104855898 104856098 + -1.30677 NA Intergenic Intergenic -6148 NM_178695 228413 Mm.259609 NM_178695 ENSMUSG00000027171 Prrg4 9930111I18Rik|TMG4 proline rich Gla (G-carboxyglutamic acid) 4 (transmembrane) protein-coding 0.010000 0.447761 Oct4_nocontrol_ChIP_peaks_unique-120 chr14 58999405 58999605 + -1.30677 NA Intergenic RLTR17B_Mm|LTR|ERVK 143388 NM_026461 67932 Mm.65550 NM_026461 ENSMUSG00000021977 1700129C05Rik - RIKEN cDNA 1700129C05 gene protein-coding 0.010000 0.373134 -36(TATGTATTATTTATG,+,0.00),-36(TATGTATTATTTATG,-,0.00) 40(TATACATATGCACA,+,0.00),40(TATACATATGCACA,-,0.00) 63(GTGTTGTTATGCTTAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-18 chr1 72226792 72226992 + -1.30677 NA Intergenic Intergenic -14578 NM_001357488 381269 Mm.422636 NM_001005423 ENSMUSG00000039395 Mreg Gm974|Wdt2|dsu melanoregulin protein-coding 0.005000 0.383085 9(TATGCATATGCGTA,+,0.00),9(TATGCATATGCGTA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-4 chr1 44102369 44102569 + -1.30677 NA promoter-TSS (NM_029368) promoter-TSS (NM_029368) -28 NM_001356296 75623 Mm.348017 NM_029368 ENSMUSG00000026049 Tex30 1700029F09Rik|3110030D08Rik testis expressed 30 protein-coding 0.145000 0.716418 merged_common-56 chr15 75085594 75085794 + -1.30677 NA Intergenic B1_Mus1|SINE|Alu 26243 NM_001357693 100041546 Mm.482110 NM_001099217 ENSMUSG00000022584 Ly6c2 Ly-6C.2|Ly-6C2 lymphocyte antigen 6 complex, locus C2 protein-coding 0.005000 0.358209 ePOU_nocontrol_ChIP_peaks_unique-101 chr18 35214617 35214817 + -1.30677 NA 5' UTR (NM_178005, exon 1 of 2) 5' UTR (NM_178005, exon 1 of 2) 307 NM_178005 107065 Mm.39900 NM_178005 ENSMUSG00000071862 Lrrtm2 AI851755|BB129880|C630011A14Rik|mKIAA0416 leucine rich repeat transmembrane neuronal 2 protein-coding 0.010000 0.452736 Oct4_nocontrol_ChIP_peaks_unique-316 chr7 28529884 28530084 + -1.30677 NA Intergenic RLTR17B_Mm|LTR|ERVK 7148 NM_177396 338374 Mm.246799 NM_177396 ENSMUSG00000060747 Ifnl3 IFL-1|IL-28B|INF-alpha|INF-lambda|Il28|Il28b interferon lambda 3 protein-coding 0.010000 0.303483 61(CATGAATATGAATG,+,0.00),61(CATGAATATGAATG,-,0.00),85(TGTGCATATGTATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-61 chr11 3193876 3194076 + -1.32441 NA promoter-TSS (NM_030207) promoter-TSS (NM_030207) -373 NM_030207 78887 Mm.394071 NM_030207 ENSMUSG00000023764 Sfi1 - Sfi1 homolog, spindle assembly associated (yeast) protein-coding 0.015000 0.378109 merged_common-119 chr4 47226015 47226215 + -1.41240 NA intron (NM_009928, intron 2 of 39) intron (NM_009928, intron 2 of 39) 18103 NM_009928 12819 Mm.233547 NM_009928 ENSMUSG00000028339 Col15a1 - collagen, type XV, alpha 1 protein-coding 0.015000 0.502488 -11(CATGAATATGCATG,+,0.00),-11(CATGAATATGCATG,-,0.00) merged_common-75 chr18 30086174 30086374 + -1.41603 NA Intergenic RLTR17B_Mm|LTR|ERVK -186591 NR_151699 225326 Mm.194127 NM_181414 ENSMUSG00000033628 Pik3c3 5330434F23Rik|Vps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 0.000000 0.328358 -49(TATGCATATGTATG,+,0.00),-49(TATGCATATGTATG,-,0.00),-22(TATGCATATGCATG,+,0.00),-22(TATGCATATGCATG,-,0.00),5(TATGCATATGTATG,+,0.00),5(TATGCATATGTATG,-,0.00),32(TATGCATATGTATG,+,0.00),32(TATGCATATGTATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-369 chrM 15375 15575 + -1.42094 NA NA Intergenic NA NA 0.005000 0.298507 merged_common-109 chr3 108304756 108304956 + -1.42652 NA intron (NM_001271599, intron 1 of 20) RLTR17B_Mm|LTR|ERVK 20792 NM_019972 20661 Mm.157119 NM_019972 ENSMUSG00000068747 Sort1 2900053A11Rik|AI852375|Ntr3|Ntsr3 sortilin 1 protein-coding 0.000000 0.293532 -93(CATGCATATGCATG,+,0.00),-93(CATGCATATGCATG,-,0.00),-63(CATACATATTCATA,+,0.00),-63(CATACATATTCATA,-,0.00),-23(TATACATATTCACA,-,0.00),19(CATACATATTCATA,+,0.00),19(CATACATATTCATA,-,0.00),53(CATGCATATTCATA,+,0.00),53(CATGCATATTCATA,-,0.00) merged_common-105 chr3 31213582 31213782 + -1.44067 NA intron (NM_172861, intron 7 of 7) intron (NM_172861, intron 7 of 7) 63762 NM_008770 18417 Mm.4425 NM_008770 ENSMUSG00000037625 Cldn11 Claudin-11|Claudin11|Osp|Otm claudin 11 protein-coding 0.005000 0.437811 -76(CATGTATATGCATA,+,0.00),-76(CATGTATATGCATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-21 chr1 98048141 98048341 + -1.44067 NA promoter-TSS (NR_037993) promoter-TSS (NR_037993) -448 NR_037993 78603 Mm.442597 NR_037993 ENSMUSG00000089706 B230216N24Rik - RIKEN cDNA B230216N24 gene ncRNA 0.000000 0.373134 merged_common-118 chr4 33975507 33975707 + -1.44067 NA Intergenic Intergenic 49227 NM_001365881 12801 Mm.7992 NM_007726 ENSMUSG00000044288 Cnr1 CB-R|CB1|CB1A|CB1B|CB1R cannabinoid receptor 1 (brain) protein-coding 0.010000 0.328358 -41(GTGTGCATGAGAAAGC,-,0.00),-11(ATTAATATGAGAAAAA,-,0.00) merged_common-138 chr6 17313648 17313848 + -1.44067 NA intron (NM_007616, intron 2 of 2) intron (NM_007616, intron 2 of 2) 6108 NM_001243064 12389 Mm.28278 NM_007616 ENSMUSG00000007655 Cav1 Cav|Cav-1 caveolin 1, caveolae protein protein-coding 0.000000 0.308458 -48(TATGGATATGCATA,+,0.00),-48(TATGGATATGCATA,-,0.00),-30(TATGCATATGCATT,+,0.00),-30(TATGCATATGCATT,-,0.00),29(TATGCATATATATA,-,0.00) 46(CTTTTATGATGTTAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-140 chr15 61405591 61405791 + -1.44067 NA Intergenic L1MC1|LINE|L1 368760 NR_040350 432956 Mm.404918 NR_040350 ENSMUSG00000116031 D030024E09Rik - RIKEN cDNA D030024E09 gene ncRNA 0.000000 0.268657 13(TATGCATATGCATT,+,0.00),13(TATGCATATGCATT,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-258 chr3 126652947 126653147 + -1.45351 NA intron (NM_001025438, intron 2 of 18) intron (NM_001025438, intron 2 of 18) 56096 NM_001293663 108058 Mm.255822 NM_023813 ENSMUSG00000053819 Camk2d 2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII calcium/calmodulin-dependent protein kinase II, delta protein-coding 0.015000 0.368159 ePOU_nocontrol_ChIP_peaks_unique-218 chr9 35200244 35200444 + -1.45351 NA promoter-TSS (NM_054096) promoter-TSS (NM_054096) -53 NM_001177845 117149 Mm.23987 NM_054096 ENSMUSG00000032041 Tirap AA407980|C130027E04Rik|Mal|Tlr4ap|Wyatt toll-interleukin 1 receptor (TIR) domain-containing adaptor protein protein-coding 0.005000 0.487562 Oct4_nocontrol_ChIP_peaks_unique-192 chr19 55991898 55992098 + -1.45351 NA Intergenic Intergenic 96677 NM_001142924 21416 Mm.139815 NM_009333 ENSMUSG00000024985 Tcf7l2 TCF4B|TCF4E|Tcf-4|Tcf4 transcription factor 7 like 2, T cell specific, HMG box protein-coding 0.015000 0.487562 merged_common-135 chr5 135545292 135545492 + -1.45351 NA promoter-TSS (NM_146001) promoter-TSS (NM_146001) -270 NM_146001 215114 Mm.280805 NM_146001 ENSMUSG00000039959 Hip1 2610109B09Rik|A930014B11Rik|E130315I21Rik|mKIAA4113 huntingtin interacting protein 1 protein-coding 0.025000 0.547264 ePOU_nocontrol_ChIP_peaks_unique-208 chr8 69749640 69749840 + -1.45351 NA intron (NM_001200023, intron 1 of 3) CpG 222 NM_001200023 620419 Mm.460423 NM_001200023 ENSMUSG00000092260 Zfp963 - zinc finger protein 963 protein-coding 0.130000 0.711443 ePOU_nocontrol_ChIP_peaks_unique-115 chr2 49900483 49900683 + -1.45351 NA intron (NM_027990, intron 3 of 9) intron (NM_027990, intron 3 of 9) 112897 NM_027990 71897 Mm.41381 NM_027990 ENSMUSG00000026765 Lypd6b 2310010M24Rik|AW049525 LY6/PLAUR domain containing 6B protein-coding 0.005000 0.417910 61(CTTTTCTTATTTAAAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-40 chr11 70764019 70764219 + -1.45351 NA promoter-TSS (NM_177565) promoter-TSS (NM_177565) -328 NM_177565 193043 Mm.40966 NM_177565 ENSMUSG00000043602 Zfp3 AI854635|B230309J24|Fnp-1|Zfp-3 zinc finger protein 3 protein-coding 0.105000 0.651741 ePOU_nocontrol_ChIP_peaks_unique-145 chr3 131054680 131054880 + -1.45351 NA Intergenic L2|LINE|L2 -55517 NM_001276402 16842 Mm.255219 NM_010703 ENSMUSG00000027985 Lef1 3000002B05|AI451430|Lef-1 lymphoid enhancer binding factor 1 protein-coding 0.015000 0.502488 Oct4_nocontrol_ChIP_peaks_unique-281 chr5 31048318 31048518 + -1.45351 NA promoter-TSS (NM_212470) promoter-TSS (NM_212470) 144 NM_001177621 330064 Mm.205463 NM_177870 ENSMUSG00000006641 Slc5a6 E430023I20 solute carrier family 5 (sodium-dependent vitamin transporter), member 6 protein-coding 0.080000 0.631841 ePOU_nocontrol_ChIP_peaks_unique-45 chr11 84880053 84880253 + -1.45351 NA promoter-TSS (NM_001362893) promoter-TSS (NM_001362893) -17 NM_001362893 66196 Mm.288689 NM_025414 ENSMUSG00000020527 Myo19 1110055A02Rik|Myohd1 myosin XIX protein-coding 0.100000 0.691542 Oct4_nocontrol_ChIP_peaks_unique-340 chr8 104410883 104411083 + -1.45351 NA Intergenic MTE2b|LTR|ERVL-MaLR -15176 NM_153582 97487 Mm.29658 NM_153582 ENSMUSG00000096188 Cmtm4 Cklfsf4|D19397|Gm9853 CKLF-like MARVEL transmembrane domain containing 4 protein-coding 0.005000 0.457711 -6(TCTTTTTTATGCAAAC,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-135 chr15 50377771 50377971 + -1.45351 NA Intergenic Intergenic 511178 NM_001310485 83925 Mm.30466 NM_032000 ENSMUSG00000038679 Trps1 AI115454|AI447310|D15Ertd586e transcriptional repressor GATA binding 1 protein-coding 0.010000 0.358209 -94(ATTAAAATTACAAAGT,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-97 chr12 118183755 118183955 + -1.45351 NA intron (NM_010060, intron 6 of 81) RLTR17B_Mm|LTR|ERVK 15188 NM_010060 13411 Mm.390540 NM_010060 ENSMUSG00000018581 Dnah11 Dnahc11|avc4|b2b1203Clo|b2b1279Clo|b2b1289Clo|b2b1727Clo|b2b598Clo|iv|lrd dynein, axonemal, heavy chain 11 protein-coding 0.000000 0.223881 -64(TATGAATATATATG,-,0.00),-60(AATATATATGCATA,+,0.00),-60(AATATATATGCATA,-,0.00),-44(TGTACATATGCATA,+,0.00),-44(TGTACATATGCATA,-,0.00),-38(TATGCATATATATG,-,0.00),-34(CATATATATGCATA,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-172 chr5 129584062 129584262 + -1.45351 NA promoter-TSS (NM_011846) promoter-TSS (NM_011846) -7 NM_011846 23948 Mm.42047 NM_011846 ENSMUSG00000029436 Mmp17 MT4-MMP|MT4MMP|MTMMP4 matrix metallopeptidase 17 protein-coding 0.130000 0.731343 ePOU_nocontrol_ChIP_peaks_unique-119 chr2 78739313 78739513 + -1.45351 NA Intergenic Intergenic -129634 NM_009454 22193 Mm.1485 NM_009454 ENSMUSG00000027011 Ube2e3 Ubce4|ubcM2 ubiquitin-conjugating enzyme E2E 3 protein-coding 0.000000 0.293532 ePOU_nocontrol_ChIP_peaks_unique-18 chr1 186185759 186185959 + -1.45351 NA Intergenic Intergenic -68549 NM_146106 226791 Mm.257116 NM_146106 ENSMUSG00000039246 Lyplal1 BC027340|Q96AVO lysophospholipase-like 1 protein-coding 0.005000 0.388060 Oct4_nocontrol_ChIP_peaks_unique-297 chr6 21949984 21950184 + -1.45351 NA exon (NM_023626, exon 2 of 12) exon (NM_023626, exon 2 of 12) 469 NM_023626 71777 Mm.39999 NM_023626 ENSMUSG00000029670 Ing3 1300013A07Rik|P47ING3 inhibitor of growth family, member 3 protein-coding 0.115000 0.681592 Oct4_nocontrol_ChIP_peaks_unique-172 chr18 39936597 39936797 + -1.45351 NA Intergenic L1_Mur2|LINE|L1 163200 NM_011033 18459 Mm.9493 NM_011033 ENSMUSG00000051732 Pabpc2 Pabp|Pabp+|Pabp2 poly(A) binding protein, cytoplasmic 2 protein-coding 0.005000 0.313433 52(TGATTGTTATGTTGAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-283 chr5 52669587 52669787 + -1.45351 NA promoter-TSS (NM_001363463) promoter-TSS (NM_001363463) 14 NM_172490 211006 Mm.244719 NM_172490 ENSMUSG00000029173 Sepsecs AA986712|D5Ertd135e|SLA|SecS Sep (O-phosphoserine) tRNA:Sec (selenocysteine) tRNA synthase protein-coding 0.135000 0.706468 ePOU_nocontrol_ChIP_peaks_unique-106 chr18 75843126 75843326 + -1.45351 NA intron (NM_145356, intron 1 of 4) intron (NM_145356, intron 1 of 4) 23048 NM_145356 207259 Mm.159332 NM_145356 ENSMUSG00000044646 Zbtb7c B230208J24Rik|Kr-pok|Zbtb36 zinc finger and BTB domain containing 7C protein-coding 0.020000 0.487562 Oct4_nocontrol_ChIP_peaks_unique-91 chr12 80359184 80359384 + -1.45351 NA intron (NM_001364324, intron 7 of 8) intron (NM_001364324, intron 7 of 8) 32393 NR_037207 100526530 NR_037207 ENSMUSG00000105972 Mir1843a Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a microRNA 1843a ncRNA 0.005000 0.467662 merged_common-142 chr7 100238812 100239012 + -1.45351 NA intron (NM_027629, intron 1 of 13) intron (NM_027629, intron 1 of 13) 11305 NM_027629 70974 Mm.440524 NM_027629 ENSMUSG00000030729 Pgm2l1 4931406N15Rik|AI553438|BM32A phosphoglucomutase 2-like 1 protein-coding 0.000000 0.318408 Oct4_nocontrol_ChIP_peaks_unique-132 chr15 36242054 36242254 + -1.45351 NA intron (NM_001357631, intron 7 of 7) intron (NM_001357631, intron 7 of 7) -1990 NR_106173 102465888 NR_106173 ENSMUSG00000098457 Mir8097 Gm27497|mmu-mir-8097 microRNA 8097 ncRNA 0.005000 0.402985 -8(TTTTCCATGAGAATTC,-,0.00),35(GCATTTTAATGCAGAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-30 chr10 128525876 128526076 + -1.45351 NA promoter-TSS (NM_011843) promoter-TSS (NM_011843) -117 NM_011843 23943 Mm.66056 NM_011843 ENSMUSG00000025366 Esyt1 Fam62a|Mbc2|vp115 extended synaptotagmin-like protein 1 protein-coding 0.040000 0.626866 Oct4_nocontrol_ChIP_peaks_unique-75 chr11 98358572 98358772 + -1.45351 NA promoter-TSS (NR_045477) promoter-TSS (NR_045477) 304 NM_021547 59045 Mm.265546 NM_021547 ENSMUSG00000018167 Stard3 Mln64|es64 START domain containing 3 protein-coding 0.090000 0.656716 ePOU_nocontrol_ChIP_peaks_unique-136 chr3 70528636 70528836 + -1.45351 NA Intergenic Intergenic 278555 NR_040556 625901 Mm.366028 NR_040556 ENSMUSG00000097252 Gm6634 EG625901 predicted gene 6634 ncRNA 0.005000 0.363184 ePOU_nocontrol_ChIP_peaks_unique-159 chr4 134768021 134768221 + -1.45351 NA promoter-TSS (NM_145554) promoter-TSS (NM_145554) -117 NM_145554 100017 Mm.27486 NM_145554 ENSMUSG00000037295 Ldlrap1 AA691260|ARH2|Arh|Arh1|FHCB1|FHCB2 low density lipoprotein receptor adaptor protein 1 protein-coding 0.090000 0.666667 Oct4_nocontrol_ChIP_peaks_unique-96 chr12 104247686 104247886 + -1.45351 NA promoter-TSS (NR_033450) promoter-TSS (NR_033450) -110 NR_033450 546546 Mm.390522 NM_001034870 Serpina3h 6C28|Spi2 serine (or cysteine) peptidase inhibitor, clade A, member 3H pseudo 0.000000 0.447761 Oct4_nocontrol_ChIP_peaks_unique-263 chr3 152714046 152714246 + -1.45351 NA promoter-TSS (NM_025662) promoter-TSS (NM_025662) 46 NM_025662 329777 Mm.331447 NM_025662 ENSMUSG00000039047 Pigk 3000001O05Rik|Gm38470|PIG-K phosphatidylinositol glycan anchor biosynthesis, class K protein-coding 0.090000 0.676617 ePOU_nocontrol_ChIP_peaks_unique-67 chr14 31103047 31103247 + -1.45351 NA intron (NM_001359857, intron 25 of 30) intron (NM_001359857, intron 25 of 30) 25783 NM_001308466 66487 Mm.379116 NM_001308091 ENSMUSG00000058351 Smim4 2010107H07Rik|Gm41122 small integral membrane protein 4 protein-coding 0.000000 0.293532 Oct4_nocontrol_ChIP_peaks_unique-50 chr10 72654638 72654838 + -1.45351 NA promoter-TSS (NM_001293684) promoter-TSS (NM_001293684) -108 NM_025635 52696 Mm.62876 NM_025635 ENSMUSG00000019923 Zwint 2010007E07Rik|2600001N01Rik|D10Ertd749e|Zwint-1 ZW10 interactor protein-coding 0.060000 0.537313 Oct4_nocontrol_ChIP_peaks_unique-241 chr2 166218611 166218811 + -1.45351 NA Intergenic B3|SINE|B2 -55197 NR_033467 670775 Mm.384326 NR_033467 ENSMUSG00000084840 Gm11468 - predicted gene 11468 ncRNA 0.015000 0.482587 Oct4_nocontrol_ChIP_peaks_unique-6 chr1 24315423 24315623 + -1.45351 NA intron (NM_007733, intron 30 of 50) intron (NM_007733, intron 30 of 50) 120320 NM_001290691 12839 Mm.154662 NM_007740 ENSMUSG00000026147 Col9a1 Col9a-1 collagen, type IX, alpha 1 protein-coding 0.005000 0.378109 -42(TTTGCATATACATG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-23 chr10 69926202 69926402 + -1.45351 NA intron (NM_170687, intron 1 of 19) intron (NM_170687, intron 1 of 19) 770 NM_170687 11735 Mm.235960 NM_009670 ENSMUSG00000069601 Ank3 2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G ankyrin 3, epithelial protein-coding 0.005000 0.373134 ePOU_nocontrol_ChIP_peaks_unique-213 chr8 104602781 104602981 + -1.45351 NA intron (NM_001252628, intron 17 of 17) intron (NM_001252628, intron 17 of 17) 11409 NM_001024606 382051 Mm.290750 NM_001024606 ENSMUSG00000048371 Pdp2 4833426J09Rik|Gm1705|mKIAA1348 pyruvate dehyrogenase phosphatase catalytic subunit 2 protein-coding 0.020000 0.562189 ePOU_nocontrol_ChIP_peaks_unique-153 chr4 47020699 47020899 + -1.45351 NA intron (NM_001024136, intron 13 of 14) B3|SINE|B2 -29085 NM_001081141 242425 Mm.101909 NM_001081141 ENSMUSG00000039809 Gabbr2 GABABR2|Gb2|Gm425|Gpr51 gamma-aminobutyric acid (GABA) B receptor, 2 protein-coding 0.025000 0.437811 49(ATTTAAAAAATAATAA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-48 chr11 107063436 107063636 + -1.45351 NA intron (NM_176850, intron 15 of 27) intron (NM_176850, intron 15 of 27) 35313 NM_001163473 69066 Mm.40679 NM_001163473 ENSMUSG00000078607 1810010H24Rik - RIKEN cDNA 1810010H24 gene protein-coding 0.000000 0.447761 -86(ATTACAATGAAAATAA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-170 chr5 108461332 108461532 + -1.45351 NA promoter-TSS (NM_172716) promoter-TSS (NM_172716) 100 NM_172716 69587 Mm.261218 NM_172716 ENSMUSG00000033623 Pcgf3 2310035N15Rik|AI662857|D630042K08Rik|DONG1|E430039C14|RNF3A|Rnf3 polycomb group ring finger 3 protein-coding 0.120000 0.761194 ePOU_nocontrol_ChIP_peaks_unique-93 chr17 69382884 69383084 + -1.45351 NA promoter-TSS (NM_001356282) promoter-TSS (NM_001356282) -191 NM_001356283 22666 Mm.29434 NM_009547 ENSMUSG00000049672 Zbtb14 ZF5|Zfp161|b2b1982Clo zinc finger and BTB domain containing 14 protein-coding 0.090000 0.706468 ePOU_nocontrol_ChIP_peaks_unique-157 chr4 128811473 128811673 + -1.45351 NA Intergenic MLT1J1|LTR|ERVL-MaLR -5461 NM_001081098 230761 Mm.22616 NM_001081098 ENSMUSG00000028799 Zfp362 - zinc finger protein 362 protein-coding 0.025000 0.497512 Oct4_nocontrol_ChIP_peaks_unique-235 chr2 128383114 128383314 + -1.45351 NA intron (NR_028591, intron 1 of 1) intron (NR_028591, intron 1 of 1) 46137 NR_028591 100043424 Mm.297222 NR_028589 Morrbid Gm14005|Mir4435-2hg myeloid RNA regulator of BCL2L11 induced cell death ncRNA 0.005000 0.233831 -55(TATACATATGCACA,+,0.00),-55(TATACATATGCACA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-96 chr17 94749895 94750095 + -1.45351 NA promoter-TSS (NM_176917) promoter-TSS (NM_176917) 24 NM_176917 76781 Mm.139146 NM_176917 ENSMUSG00000055660 Mettl4 2410198H06Rik|A730091E08Rik|AV296509|HsT661 methyltransferase like 4 protein-coding 0.140000 0.671642 Oct4_nocontrol_ChIP_peaks_unique-302 chr6 52747471 52747671 + -1.45351 NA intron (NM_001355596, intron 12 of 17) intron (NM_001355596, intron 12 of 17) 33406 NM_001355596 52440 Mm.389757 NM_025816 ENSMUSG00000004535 Tax1bp1 1200003J11Rik|1700069J21Rik|AA930106|D6Ertd404e|D6Ertd772e|T6bp|TXBP151 Tax1 (human T cell leukemia virus type I) binding protein 1 protein-coding 0.010000 0.298507 ePOU_nocontrol_ChIP_peaks_unique-88 chr17 27909230 27909430 + -1.45351 NA promoter-TSS (NM_001286040) promoter-TSS (NM_001286040) 24 NM_181413 224650 Mm.32556 NM_181413 ENSMUSG00000024219 Anks1 Anks1a|mKIAA0229 ankyrin repeat and SAM domain containing 1 protein-coding 0.125000 0.756219 ePOU_nocontrol_ChIP_peaks_unique-123 chr2 125275611 125275811 + -1.45351 NA Intergenic Intergenic 28196 NM_023595 110074 Mm.282499 NM_023595 ENSMUSG00000027203 Dut 5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase deoxyuridine triphosphatase protein-coding 0.020000 0.482587 ePOU_nocontrol_ChIP_peaks_unique-198 chr7 138606277 138606477 + -1.45351 NA Intergenic Intergenic 52135 NR_131022 75187 Mm.410810 NR_131022 ENSMUSG00000110037 4930543N07Rik Gm45685 RIKEN cDNA 4930543N07 gene ncRNA 0.005000 0.358209 11(GATGAATTATTCATT,+,0.00),11(GATGAATTATTCATT,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-224 chr9 94966953 94967153 + -1.45351 NA intron (NM_177909, intron 9 of 15) intron (NM_177909, intron 9 of 15) 215224 NR_106116 102465763 NR_106116 ENSMUSG00000098251 Mir7656 Gm27614|mmu-mir-7656 microRNA 7656 ncRNA 0.000000 0.368159 53(ATTTCCAATAAAAAGA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-360 chr9 88234529 88234729 + -1.45351 NA Intergenic L1M3|LINE|L1 91173 NR_162813 114482949 NR_162813 Mir12205 mmu-mir-12205 microRNA mir-12205 ncRNA 0.000000 0.338308 Oct4_nocontrol_ChIP_peaks_unique-265 chr3 159876346 159876546 + -1.45351 NA intron (NM_001356349, intron 3 of 12) RLTR17B_Mm|LTR|ERVK 36796 NM_026582 68151 Mm.6766 NM_026582 ENSMUSG00000028173 Wls 5031439A09Rik|AI173978|AI987742|EVI|Gpr177 wntless WNT ligand secretion mediator protein-coding 0.000000 0.348259 Oct4_nocontrol_ChIP_peaks_unique-168 chr17 55959141 55959341 + -1.45351 NA promoter-TSS (NM_028381) promoter-TSS (NM_028381) 54 NM_028381 72886 Mm.22796 NM_028381 ENSMUSG00000003208 Yju2 2900016D05Rik|AI413813|Ccdc94 YJU2 splicing factor protein-coding 0.085000 0.552239 ePOU_nocontrol_ChIP_peaks_unique-204 chr8 34270699 34270899 + -1.45351 NA Intergenic L1MEd|LINE|L1 -104087 NR_105820 102465211 NR_105820 ENSMUSG00000098785 Mir6395 Gm27561|mmu-mir-6395 microRNA 6395 ncRNA 0.005000 0.348259 -73(GCTACATATGCATT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-118 chr2 77618731 77618931 + -1.45351 NA intron (NM_178723, intron 3 of 9) intron (NM_178723, intron 3 of 9) 2583 NM_001363039 241494 Mm.490320 NM_178723 ENSMUSG00000027016 Zfp385b B830010L13Rik|C130013B13Rik|Zfp533|Znf385b zinc finger protein 385B protein-coding 0.005000 0.422886 -9(TGATTGTTGTGTAAAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-156 chr4 97757583 97757783 + -1.45351 NA intron (NM_001122952, intron 1 of 10) intron (NM_001122952, intron 1 of 10) -19943 NM_010905 18027 Mm.31274 NM_010905 ENSMUSG00000028565 Nfia 1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A nuclear factor I/A protein-coding 0.085000 0.582090 ePOU_nocontrol_ChIP_peaks_unique-169 chr5 101538072 101538272 + -1.45351 NA Intergenic Intergenic 126539 NM_144955 18096 Mm.193072 NM_144955 ENSMUSG00000035187 Nkx6-1 NKX6A|Nkx6.1 NK6 homeobox 1 protein-coding 0.025000 0.422886 25(ATTAGAATGATAATGG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-185 chr6 145320856 145321056 + -1.45351 NA Intergenic Intergenic -66669 NR_003625 381827 Mm.179075 NM_001001987 1700073E17Rik - ribosomal protein L7 pseudogene pseudo 0.025000 0.447761 13(CATAAATAGTCATA,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-214 chr8 111765824 111766024 + -1.45351 NA TTS (NM_011801) TTS (NM_011801) -22075 NM_009954 12927 Mm.3758 NM_009954 ENSMUSG00000031955 Bcar1 AI385681|Cas|Crkas breast cancer anti-estrogen resistance 1 protein-coding 0.015000 0.512438 67(ATTTCCTTAACAATTC,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-113 chr2 25211273 25211473 + -1.45351 NA 5' UTR (NM_021393, exon 1 of 13) 5' UTR (NM_021393, exon 1 of 13) 116 NM_021393 58202 Mm.116418 NM_021393 ENSMUSG00000013465 Nelfb A730008L03Rik|AB041607|AI663983|Cobra1|Nelf-b negative elongation factor complex member B protein-coding 0.090000 0.701493 ePOU_nocontrol_ChIP_peaks_unique-188 chr7 46795862 46796062 + -1.45351 NA promoter-TSS (NM_008186) promoter-TSS (NM_008186) -81 NM_001167864 246694 Mm.379442 NM_178742 ENSMUSG00000014418 Hps5 AI646796|AL022647|C85120|haze|hz|maroon|mr|ru-2|ru2 HPS5, biogenesis of lysosomal organelles complex 2 subunit 2 protein-coding 0.120000 0.696517 Oct4_nocontrol_ChIP_peaks_unique-228 chr2 122377655 122377855 + -1.45351 NA Intergenic Intergenic -8837 NM_001013829 435684 Mm.458215 NM_001013829 ENSMUSG00000033256 Shf - Src homology 2 domain containing F protein-coding 0.035000 0.417910 Oct4_nocontrol_ChIP_peaks_unique-271 chr4 94987686 94987886 + -1.45351 NA Intergenic Intergenic -8686 NM_177239 320713 Mm.208868 NM_177239 ENSMUSG00000062627 Mysm1 C130067A03Rik|C530050H10Rik myb-like, SWIRM and MPN domains 1 protein-coding 0.010000 0.378109 76(CAAGTGTCATGCAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-124 chr14 93288423 93288623 + -1.45351 NA intron (NM_001081377, intron 4 of 4) intron (NM_001081377, intron 4 of 4) 602146 NM_001271798 211712 Mm.37126 NM_001081377 ENSMUSG00000055421 Pcdh9 - protocadherin 9 protein-coding 0.005000 0.368159 Oct4_nocontrol_ChIP_peaks_unique-83 chr12 36213199 36213399 + -1.45351 NA intron (NM_001361098, intron 6 of 8) intron (NM_001361098, intron 6 of 8) 4919 NM_027699 71156 Mm.250837 NM_027699 ENSMUSG00000020545 Lrrc72 1700108M19Rik|4933421E18Rik leucine rich repeat containing 72 protein-coding 0.000000 0.353234 27(AATGAATAGGCATG,+,0.00),27(AATGAATAGGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-318 chr7 46607281 46607481 + -1.45351 NA intron (NM_013789, intron 8 of 10) intron (NM_013789, intron 8 of 10) 32426 NM_013789 27414 Mm.76659 NM_013789 ENSMUSG00000030839 Sergef DelGEF|Gef|Gnef|Gnefr secretion regulating guanine nucleotide exchange factor protein-coding 0.020000 0.437811 ePOU_nocontrol_ChIP_peaks_unique-127 chr2 134786541 134786741 + -1.45351 NA intron (NM_001145830, intron 1 of 31) CpG 477 NM_019677 18795 Mm.330607 NM_019677 ENSMUSG00000051177 Plcb1 3110043I21Rik|AI132408|Plcb|mKIAA0581 phospholipase C, beta 1 protein-coding 0.090000 0.681592 Oct4_nocontrol_ChIP_peaks_unique-12 chr1 52494950 52495150 + -1.45351 NA intron (NM_008667, intron 1 of 7) intron (NM_008667, intron 1 of 7) 5398 NM_008667 17936 Mm.25903 NM_008667 ENSMUSG00000002881 Nab1 - Ngfi-A binding protein 1 protein-coding 0.010000 0.353234 -29(ATTTAAAAAAAAAAAG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-95 chr17 78417898 78418098 + -1.45351 NA exon (NM_001285940, exon 1 of 9) exon (NM_001285940, exon 1 of 9) 154 NM_199448 225020 Mm.236835 NM_199448 ENSMUSG00000056121 Fez2 9030616F16|D17Ertd315e fasciculation and elongation protein zeta 2 (zygin II) protein-coding 0.110000 0.701493 ePOU_nocontrol_ChIP_peaks_unique-138 chr3 104483999 104484199 + -1.45351 NA intron (NM_001025067, intron 8 of 17) ORR1D1-int|LTR|ERVL-MaLR 27819 NM_001025067 269473 Mm.34855 NM_001025067 ENSMUSG00000032913 Lrig2 4632419I10Rik|BB096938|LIG-2 leucine-rich repeats and immunoglobulin-like domains 2 protein-coding 0.005000 0.402985 ePOU_nocontrol_ChIP_peaks_unique-142 chr3 116631537 116631737 + -1.45351 NA TTS (NM_028349) TTS (NM_028349) -17050 NM_030016 229780 Mm.259648 NM_030016 ENSMUSG00000033439 Trmt13 4631408H19Rik|A330067P21|A930028L21Rik|Ccdc76 tRNA methyltransferase 13 protein-coding 0.005000 0.358209 -45(TTATGATTATGCAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-106 chr13 51258913 51259113 + -1.45351 NA Intergenic Intergenic -55947 NR_132443 667728 NR_132443 Hist1h2al EG667728 histone cluster 1, H2al pseudo 0.005000 0.462687 ePOU_nocontrol_ChIP_peaks_unique-99 chr18 14682813 14683013 + -1.45351 NA promoter-TSS (NM_009280) promoter-TSS (NM_009280) 1 NM_001161369 268996 Mm.31761 NM_009280 ENSMUSG00000037013 Ss18 D130059H17|Ssxt|Syt SS18, nBAF chromatin remodeling complex subunit protein-coding 0.130000 0.751244 ePOU_nocontrol_ChIP_peaks_unique-161 chr5 8165116 8165316 + -1.45351 NA intron (NM_001007220, intron 5 of 28) intron (NM_001007220, intron 5 of 28) 108674 NM_001080974 109552 Mm.96211 NM_025618 ENSMUSG00000003161 Sri 2210417O06Rik|2900070H08Rik|Sor sorcin protein-coding 0.010000 0.313433 49(GATGAATTATGCATG,+,0.00),49(GATGAATTATGCATG,-,0.00) merged_common-47 chr14 106052802 106053002 + -1.45351 NA Intergenic Intergenic -53296 NM_198601 212085 Mm.78128 NM_198601 ENSMUSG00000022113 Trim52 4921513B05Rik tripartite motif-containing 52 protein-coding 0.005000 0.417910 -23(ATCTACACAACAAAGA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-81 chr12 24975559 24975759 + -1.45351 NA intron (NM_001081378, intron 1 of 31) intron (NM_001081378, intron 1 of 31) 727 NM_001081378 77480 Mm.250641 NM_001081378 ENSMUSG00000036333 Kidins220 3110039L19Rik|AI194387|AI316525|C330002I19Rik|mKIAA1250 kinase D-interacting substrate 220 protein-coding 0.025000 0.457711 ePOU_nocontrol_ChIP_peaks_unique-209 chr8 88719017 88719217 + -1.45351 NA intron (NM_001128170, intron 5 of 17) intron (NM_001128170, intron 5 of 17) 22089 NM_001128171 74256 Mm.490395 NM_173369 ENSMUSG00000036712 Cyld 2010013M14Rik|2900009M21Rik|C130039D01Rik|CDMT|CYLD1|EAC|mKIAA0849 CYLD lysine 63 deubiquitinase protein-coding 0.010000 0.303483 -32(ATTTACAAAAGAACAG,-,0.00),42(ATCTGCATGACTATAA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-12 chr1 82571595 82571795 + -1.45351 NA intron (NM_007735, intron 1 of 47) intron (NM_007735, intron 1 of 47) 15154 NM_007735 12829 Mm.40253 NM_007735 ENSMUSG00000067158 Col4a4 E130010M05Rik|[a]4(IV) collagen, type IV, alpha 4 protein-coding 0.005000 0.383085 ePOU_nocontrol_ChIP_peaks_unique-10 chr1 74816751 74816951 + -1.45351 NA Intergenic Intergenic 24832 NM_009518 22409 Mm.5130 NM_009518 ENSMUSG00000026167 Wnt10a - wingless-type MMTV integration site family, member 10A protein-coding 0.045000 0.557214 6(CCTTGTTCGTGCTAAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-89 chr17 28177219 28177419 + -1.45351 NA promoter-TSS (NM_172617) promoter-TSS (NM_172617) -99 NM_172617 224656 Mm.267359 NM_172617 ENSMUSG00000024220 Zfp523 2810027J07|BC025615|Znf76 zinc finger protein 523 protein-coding 0.145000 0.781095 ePOU_nocontrol_ChIP_peaks_unique-167 chr5 76540242 76540442 + -1.45351 NA 3' UTR (NM_001359373, exon 4 of 4) 3' UTR (NM_001359373, exon 4 of 4) 10984 NM_001359373 69940 Mm.403233 NM_027270 ENSMUSG00000036435 Exoc1 2810407P21Rik|A730011E05Rik|SEC3|Sec3l1|Sec3p exocyst complex component 1 protein-coding 0.010000 0.432836 ePOU_nocontrol_ChIP_peaks_unique-68 chr14 47241768 47241968 + -1.45351 NA intron (NM_001360532, intron 24 of 24) intron (NM_001360532, intron 24 of 24) 34989 NM_172598 218973 Mm.265615 NM_172598 ENSMUSG00000037572 Wdhd1 A630092E18|AND-1|D630024B06Rik WD repeat and HMG-box DNA binding protein 1 protein-coding 0.005000 0.328358 -55(CTTTGAAAAACAGTGG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-285 chr5 65607587 65607787 + -1.45351 NA 3' UTR (NM_001081321, exon 33 of 33) 3' UTR (NM_001081321, exon 33 of 33) 70442 NM_001310619 53323 Mm.319512 NM_016786 ENSMUSG00000029203 Ube2k AW492011|D5Ertd601e|E2-25k|HIP-2|Hip2|Hypg|Lig ubiquitin-conjugating enzyme E2K protein-coding 0.010000 0.417910 60(CATGAATATTCACG,+,0.00),60(CATGAATATTCACG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-323 chr7 134762408 134762608 + -1.45351 NA intron (NM_001033420, intron 13 of 51) intron (NM_001033420, intron 13 of 51) 91821 NM_001033420 330662 Mm.436572 NM_001033420 ENSMUSG00000058325 Dock1 9130006G06Rik|AI854900|D630004B07Rik|b2b3190Clo dedicator of cytokinesis 1 protein-coding 0.010000 0.422886 ePOU_nocontrol_ChIP_peaks_unique-74 chr14 118566262 118566462 + -1.45351 NA intron (NM_001033336, intron 19 of 30) intron (NM_001033336, intron 19 of 30) 26110 NR_105815 102465208 NR_105815 ENSMUSG00000098433 Mir6391 Gm27914|mmu-mir-6391 microRNA 6391 ncRNA 0.015000 0.388060 ePOU_nocontrol_ChIP_peaks_unique-5 chr1 44148069 44148269 + -1.45351 NA intron (NM_011729, intron 1 of 14) CpG 425 NM_011729 22592 Mm.2213 NM_011729 ENSMUSG00000026048 Ercc5 Xpg excision repair cross-complementing rodent repair deficiency, complementation group 5 protein-coding 0.080000 0.686567 merged_common-71 chr18 3337488 3337688 + -1.45351 NA promoter-TSS (NM_001110852) promoter-TSS (NM_001110852) 1 NM_001110851 12916 Mm.5244 NM_013498 ENSMUSG00000063889 Crem ICER|ICERI cAMP responsive element modulator protein-coding 0.110000 0.661692 Oct4_nocontrol_ChIP_peaks_unique-77 chr11 116671471 116671671 + -1.45351 NA promoter-TSS (NR_027821) promoter-TSS (NR_027821) -89 NR_027819 66293 Mm.432051 NM_025472 ENSMUSG00000020812 Snhg16 1810032O08Rik small nucleolar RNA host gene 16 ncRNA 0.070000 0.547264 ePOU_nocontrol_ChIP_peaks_unique-211 chr8 95080860 95081060 + -1.45351 NA promoter-TSS (NM_028805) promoter-TSS (NM_028805) -241 NM_028805 74187 Mm.28382 NM_028805 ENSMUSG00000031787 Katnb1 2410003J24Rik|KAT katanin p80 (WD40-containing) subunit B 1 protein-coding 0.065000 0.537313 Oct4_nocontrol_ChIP_peaks_unique-299 chr6 28793283 28793483 + -1.45351 NA intron (NM_019776, intron 15 of 23) intron (NM_019776, intron 15 of 23) 38364 NM_138682 192198 Mm.443660 NM_138682 ENSMUSG00000049939 Lrrc4 MBAG1|NGL-2|NGL2|NLG-2|Nag14 leucine rich repeat containing 4 protein-coding 0.030000 0.432836 -13(TATACATATGCATG,+,0.00),-13(TATACATATGCATG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-194 chr7 114740610 114740810 + -1.45351 NA Intergenic Intergenic -5056 NM_173767 233752 Mm.83037 NM_173767 ENSMUSG00000048782 Insc 3830422K02Rik|C730020D23 INSC spindle orientation adaptor protein protein-coding 0.010000 0.432836 ePOU_nocontrol_ChIP_peaks_unique-17 chr1 171281512 171281712 + -1.45351 NA promoter-TSS (NM_008911) promoter-TSS (NM_008911) -426 NM_008911 19044 Mm.266888 NM_008911 ENSMUSG00000062729 Ppox Ppo protoporphyrinogen oxidase protein-coding 0.040000 0.592040 Oct4_nocontrol_ChIP_peaks_unique-279 chr5 23963740 23963940 + -1.45351 NA 3' UTR (NM_053090, exon 11 of 11) 3' UTR (NM_053090, exon 11 of 11) 66472 NM_001310471 84652 Mm.304976 NM_053090 ENSMUSG00000028995 Fam126a AB030242|Drctnnb1a family with sequence similarity 126, member A protein-coding 0.000000 0.378109 12(TCTTTCTTATGTTAAA,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-143 chr3 127544707 127544907 + -1.45351 NA promoter-TSS (NR_146435) promoter-TSS (NR_146435) -282 NR_146435 110008574 NR_146435 LOC110008574 - miR-302 host gene ncRNA 0.010000 0.398010 Oct4_nocontrol_ChIP_peaks_unique-190 chr19 51516122 51516322 + -1.45351 NA Intergenic RMER1C|Other|Other -748075 NM_008386 16333 Mm.46269 NM_008386 ENSMUSG00000035804 Ins1 Ins-1|Ins2-rs1 insulin I protein-coding 0.010000 0.447761 Oct4_nocontrol_ChIP_peaks_unique-26 chr1 162530907 162531107 + -1.45351 NA Intergenic MTB_Mm-int|LTR|ERVL-MaLR 17338 NM_144877 71449 Mm.270569 NM_144877 ENSMUSG00000026694 Eef1aknmt 5630401D24Rik|Mettl13 EEF1A lysine and N-terminal methyltransferase protein-coding 0.000000 0.358209 -2(CCTTTCTCATTCAATC,+,0.00) merged_common-2 chr1 51733805 51734005 + -1.45351 NA Intergenic ORR1A2-int|LTR|ERVL-MaLR -137187 NR_151621 100045066 Mm.404734 NR_151621 Gm17767 - predicted gene, 17767 ncRNA 0.000000 0.358209 -12(ACTTTGGAATGTAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-272 chr4 105489029 105489229 + -1.45351 NA Intergenic Intergenic 331782 NM_080555 67916 Mm.348326 NM_080555 ENSMUSG00000028517 Plpp3 1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|PRG-2|Ppab2b|Ppap2b phospholipid phosphatase 3 protein-coding 0.000000 0.303483 -34(TATGCATATTCACA,+,0.00),-34(TATGCATATTCACA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-15 chr1 135766083 135766283 + -1.45351 NA promoter-TSS (NM_013750) promoter-TSS (NM_013750) 98 NM_013750 27280 Mm.34346 NM_013750 ENSMUSG00000041801 Phlda3 Tih1 pleckstrin homology like domain, family A, member 3 protein-coding 0.140000 0.746269 ePOU_nocontrol_ChIP_peaks_unique-166 chr5 48372328 48372528 + -1.45351 NA promoter-TSS (NM_025755) promoter-TSS (NM_025755) 36 NM_025755 66768 Mm.29409 NM_025755 ENSMUSG00000029089 Pacrgl 4933428G09Rik PARK2 co-regulated-like protein-coding 0.115000 0.681592 Oct4_nocontrol_ChIP_peaks_unique-354 chr9 52449459 52449659 + -1.45351 NA Intergenic Lx9|LINE|L1 229878 NM_178906 330941 Mm.335160 NM_177907 ENSMUSG00000078307 AI593442 E130102D23 expressed sequence AI593442 protein-coding 0.000000 0.363184 -69(CATGCATATGCATA,+,0.00),-69(CATGCATATGCATA,-,0.00),-63(TATGCATATGTATA,+,0.00),-63(TATGCATATGTATA,-,0.00),-48(AATGCATATTCCTA,-,0.00) -76(GTTTTTACATGCATAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-168 chr5 100798497 100798697 + -1.45351 NA promoter-TSS (NM_001081107) promoter-TSS (NM_001081107) 3 NM_001081107 191578 Mm.21469 NM_180984 ENSMUSG00000035266 Helq AU021725|D430018E21Rik|Hel308 helicase, POLQ-like protein-coding 0.105000 0.671642 ePOU_nocontrol_ChIP_peaks_unique-42 chr11 76846885 76847085 + -1.45351 NA promoter-TSS (NM_007754) promoter-TSS (NM_007754) 23 NM_007754 12874 Mm.276736 NM_007754 ENSMUSG00000020841 Cpd AA960140|AW322530|D830034L15Rik carboxypeptidase D protein-coding 0.115000 0.726368 ePOU_nocontrol_ChIP_peaks_unique-121 chr2 92024416 92024616 + -1.45351 NA promoter-TSS (NM_011957) promoter-TSS (NM_011957) -346 NM_011957 26427 Mm.10353 NM_011957 ENSMUSG00000027230 Creb3l1 Oasis cAMP responsive element binding protein 3-like 1 protein-coding 0.065000 0.601990 57(CATCAATATTCACG,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-63 chr11 6989123 6989323 + -1.45351 NA Intergenic Intergenic -74210 NM_009622 432530 Mm.259733 NM_009622 ENSMUSG00000020431 Adcy1 AC1|D11Bwg1392e|I-AC|brl adenylate cyclase 1 protein-coding 0.015000 0.437811 merged_common-77 chr18 49755544 49755744 + -1.45351 NA promoter-TSS (NM_001170960) promoter-TSS (NM_001170960) -43 NM_001170960 68857 Mm.96010 NM_026854 ENSMUSG00000024505 Dtwd2 1190002H09Rik|8030470C17Rik|AI414673|BB115449 DTW domain containing 2 protein-coding 0.090000 0.656716 ePOU_nocontrol_ChIP_peaks_unique-84 chr16 42875255 42875455 + -1.45351 NA intron (NR_040522, intron 1 of 1) CpG 232 NR_040521 75722 Mm.243747 NR_040521 ENSMUSG00000075070 4932412D23Rik Gm10809 RIKEN cDNA 4932412D23 gene ncRNA 0.040000 0.462687 Oct4_nocontrol_ChIP_peaks_unique-176 chr18 49707263 49707463 + -1.45351 NA intron (NM_001170960, intron 2 of 3) intron (NM_001170960, intron 2 of 3) 48238 NM_026854 68857 Mm.96010 NM_026854 ENSMUSG00000024505 Dtwd2 1190002H09Rik|8030470C17Rik|AI414673|BB115449 DTW domain containing 2 protein-coding 0.000000 0.323383 ePOU_nocontrol_ChIP_peaks_unique-132 chr2 181520346 181520546 + -1.45351 NA promoter-TSS (NM_001271585) promoter-TSS (NM_001271585) -39 NM_001271585 13002 Mm.140761 NM_016775 ENSMUSG00000000826 Dnajc5 2610314I24Rik|AU018536|Csp DnaJ heat shock protein family (Hsp40) member C5 protein-coding 0.100000 0.646766 ePOU_nocontrol_ChIP_peaks_unique-148 chr4 24897967 24898167 + -1.45351 NA promoter-TSS (NM_026742) promoter-TSS (NM_026742) -16 NM_026742 68493 Mm.204831 NM_026742 ENSMUSG00000028261 Ndufaf4 1110007M04Rik|3000003G13Rik|AW214064 NADH:ubiquinone oxidoreductase complex assembly factor 4 protein-coding 0.105000 0.661692 Oct4_nocontrol_ChIP_peaks_unique-78 chr11 118433508 118433708 + -1.45351 NA promoter-TSS (NM_019959) promoter-TSS (NM_019959) -193 NM_019959 56745 Mm.23845 NM_019959 ENSMUSG00000017446 C1qtnf1 1600017K21Rik|Adip|CTRP1|Zsig37 C1q and tumor necrosis factor related protein 1 protein-coding 0.025000 0.517413 Oct4_nocontrol_ChIP_peaks_unique-64 chr11 12425904 12426104 + -1.45351 NA intron (NM_001282993, intron 1 of 13) intron (NM_001282993, intron 1 of 13) -13864 NM_001282994 12808 Mm.22847 NM_172496 ENSMUSG00000020173 Cobl - cordon-bleu WH2 repeat protein-coding 0.015000 0.457711 16(CATGCATATGCACA,+,0.00),16(CATGCATATGCACA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-9 chr1 74397343 74397543 + -1.45351 NA TTS (NM_153088) TTS (NM_153088) 3133 NR_029743 387219 NR_029743 ENSMUSG00000065468 Mir26b Mirn26b|mir-26b|mmu-mir-26b microRNA 26b ncRNA 0.090000 0.706468 merged_common-139 chr6 37642086 37642286 + -1.45351 NA Intergenic Intergenic 112013 NM_145364 208665 Mm.262635 NM_145364 ENSMUSG00000038641 Akr1d1 - aldo-keto reductase family 1, member D1 protein-coding 0.005000 0.447761 Oct4_nocontrol_ChIP_peaks_unique-88 chr12 65172820 65173020 + -1.45351 NA promoter-TSS (NM_172578) promoter-TSS (NM_172578) -340 NM_172578 217653 Mm.21144 NM_172578 ENSMUSG00000047534 Mis18bp1 6720403H11|C79407|Knl2|mKIAA1903 MIS18 binding protein 1 protein-coding 0.065000 0.477612 ePOU_nocontrol_ChIP_peaks_unique-139 chr3 106547441 106547641 + -1.45351 NA promoter-TSS (NM_001286987) promoter-TSS (NM_001286987) 84 NM_001357818 99712 Mm.429443 NM_133869 ENSMUSG00000040774 Cept1 9930118K05Rik|mCEPT1 choline/ethanolaminephosphotransferase 1 protein-coding 0.120000 0.711443 ePOU_nocontrol_ChIP_peaks_unique-63 chr13 78628723 78628923 + -1.45351 NA Intergenic Intergenic -429950 NM_010151 13865 Mm.439653 NM_010151 ENSMUSG00000069171 Nr2f1 COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1 nuclear receptor subfamily 2, group F, member 1 protein-coding 0.000000 0.293532 50(CATGCATATCCATA,+,0.00),50(CATGCATATCCATA,-,0.00) -78(ATTTGCATGAATGTCC,-,0.00),55(ATATCCATAACAGAAA,-,0.00) merged_common-48 chr14 118589274 118589474 + -1.45351 NA intron (NM_001033336, intron 19 of 30) intron (NM_001033336, intron 19 of 30) 3098 NR_105815 102465208 NR_105815 ENSMUSG00000098433 Mir6391 Gm27914|mmu-mir-6391 microRNA 6391 ncRNA 0.035000 0.333333 83(ATTAACAAGGAAAAAA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-264 chr3 158886440 158886640 + -1.45351 NA Intergenic Intergenic -189824 NR_040750 624759 Mm.491054 NR_040750 ENSMUSG00000106053 Gm20752 - predicted gene, 20752 ncRNA 0.000000 0.378109 Oct4_nocontrol_ChIP_peaks_unique-317 chr7 29944362 29944562 + -1.45351 NA intron (NM_178384, intron 2 of 5) RLTR31B2|LTR|ERVK 9603 NM_178384 72723 Mm.371648 NM_178384 ENSMUSG00000059975 Zfp74 2810054M15Rik|KRAB8|Zfp66|Znf569|mszf21|mszf77|zfp-74 zinc finger protein 74 protein-coding 0.005000 0.437811 -37(GTACTGTTATTCAGAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-100 chr18 23839489 23839689 + -1.45351 NA intron (NM_153058, intron 2 of 6) RLTR17B_Mm|LTR|ERVK 35619 NM_153058 212307 Mm.132237 NM_153058 ENSMUSG00000024277 Mapre2 AI314113|C820009F03Rik|D18Abb1e|EB1|EB2|RP1 microtubule-associated protein, RP/EB family, member 2 protein-coding 0.000000 0.348259 3(TATGCATATTACATA,-,0.00) -85(CATGCATATTTACA,+,0.00),-69(CATACATATACATG,+,0.00),-69(CATACATATACATG,-,0.00),-3(GATAAATATGCATA,+,0.00),-3(GATAAATATGCATA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-37 chr11 47002542 47002742 + -1.45351 NA intron (NM_011891, intron 6 of 7) intron (NM_011891, intron 6 of 7) 191843 NM_178759 276891 Mm.69002 NM_178759 ENSMUSG00000055546 Timd4 B430010N18Rik|TIM-4|Tim4 T cell immunoglobulin and mucin domain containing 4 protein-coding 0.005000 0.398010 Oct4_nocontrol_ChIP_peaks_unique-165 chr17 44445539 44445739 + -1.45351 NA Intergenic L1ME3E|LINE|L1 257067 NM_172621 224796 Mm.37666 NM_172621 ENSMUSG00000023959 Clic5 5730531E12Rik|B330005L24|Gm322|jbg|nmf318 chloride intracellular channel 5 protein-coding 0.015000 0.388060 -26(AAATTGTTTTTCTAAT,+,0.00) merged_common-101 chr2 166273547 166273747 + -1.45351 NA promoter-TSS (NR_033467) promoter-TSS (NR_033467) -261 NR_033467 670775 Mm.384326 NR_033467 ENSMUSG00000084840 Gm11468 - predicted gene 11468 ncRNA 0.020000 0.432836 -37(TCTTTATTATGGAAAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-225 chr9 108991611 108991811 + -1.45351 NA promoter-TSS (NM_173019) promoter-TSS (NM_173019) -191 NR_153429 270198 Mm.132391 NM_173019 ENSMUSG00000025648 Pfkfb4 C230090D14 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 4 protein-coding 0.040000 0.527363 merged_common-85 chr2 28840304 28840504 + -1.45351 NA promoter-TSS (NM_001166033) promoter-TSS (NM_001166033) -2 NM_001033294 227674 Mm.44179 NM_001033294 ENSMUSG00000026806 Ddx31 5830444G11Rik|Gm997 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 31 protein-coding 0.095000 0.676617 Oct4_nocontrol_ChIP_peaks_unique-349 chr9 21870459 21870659 + -1.45351 NA Intergenic Lx9|LINE|L1 -17924 NM_177030 319899 Mm.128153 NM_177030 ENSMUSG00000032198 Dock6 2410095B20Rik|4931431C02Rik|C330023D02Rik|mKIAA1395 dedicator of cytokinesis 6 protein-coding 0.020000 0.368159 -70(ATTTGAAAGAGAGCAA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-71 chr11 76447870 76448070 + -1.45351 NA intron (NM_198894, intron 16 of 22) intron (NM_198894, intron 16 of 22) -10665 NM_001363379 109934 Mm.258939 NM_198018 ENSMUSG00000017631 Abr - active BCR-related gene protein-coding 0.000000 0.542289 merged_common-15 chr10 75517564 75517764 + -1.45351 NA promoter-TSS (NM_026095) promoter-TSS (NM_026095) -283 NM_175133 68778 Mm.29382 NM_175133 ENSMUSG00000033416 Gucd1 1110038D17Rik guanylyl cyclase domain containing 1 protein-coding 0.045000 0.567164 Oct4_nocontrol_ChIP_peaks_unique-14 chr1 61622238 61622438 + -1.45351 NA Intergenic Intergenic -16486 NM_001081050 72823 Mm.35153 NM_001081050 ENSMUSG00000052062 Pard3b 1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 0.005000 0.328358 -54(ATTTAAAAGACAAACA,-,0.00),50(CATTTGTCATGGAAAC,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-91 chr17 46646154 46646354 + -1.45351 NA promoter-TSS (NM_025302) promoter-TSS (NM_025302) 25 NM_025302 27398 Mm.391007 NM_025302 ENSMUSG00000002767 Mrpl2 CGI-22|L2mt|MRP-L14|MRP-L2|Rpml14 mitochondrial ribosomal protein L2 protein-coding 0.120000 0.661692 Oct4_nocontrol_ChIP_peaks_unique-332 chr8 69716569 69716769 + -1.45351 NA 5' UTR (NM_001359086, exon 1 of 6) 5' UTR (NM_001359086, exon 1 of 6) 233 NM_001359086 66869 Mm.334581 NM_181274 ENSMUSG00000054648 Zfp869 1200003I07Rik zinc finger protein 869 protein-coding 0.105000 0.701493 Oct4_nocontrol_ChIP_peaks_unique-128 chr14 102700268 102700468 + -1.45351 NA Intergenic Intergenic 282264 NR_039592 100628599 NR_039592 ENSMUSG00000092901 Mir5130 mir-5130|mmu-mir-5130|mu-mir-5130 microRNA 5130 ncRNA 0.010000 0.378109 -54(CTTTGAATCAAAATAG,-,0.00) merged_common-70 chr17 87530610 87530810 + -1.45351 NA Intergenic Intergenic -83775 NM_007589 12314 Mm.329243 NM_007589 ENSMUSG00000036438 Calm2 1500001E21Rik|AL024017|Cam2|CamC calmodulin 2 protein-coding 0.070000 0.666667 Oct4_nocontrol_ChIP_peaks_unique-118 chr14 48121485 48121685 + -1.45351 NA intron (NM_033602, intron 1 of 5) CpG 716 NM_033602 93834 Mm.296457 NM_033602 ENSMUSG00000021846 Peli2 AW047589|BB129927 pellino 2 protein-coding 0.090000 0.681592 ePOU_nocontrol_ChIP_peaks_unique-164 chr5 30666749 30666949 + -1.45351 NA promoter-TSS (NM_001302132) promoter-TSS (NM_001302132) -37 NR_126074 12615 Mm.290563 NM_007681 ENSMUSG00000029177 Cenpa Cenp-A centromere protein A protein-coding 0.050000 0.532338 Oct4_nocontrol_ChIP_peaks_unique-159 chr17 5641262 5641462 + -1.45351 NA intron (NM_146073, intron 1 of 8) RLTR17B_Mm|LTR|ERVK 148762 NM_146073 224454 Mm.487663 NM_146073 ENSMUSG00000034265 Zdhhc14 B530001K09Rik|New1cp zinc finger, DHHC domain containing 14 protein-coding 0.005000 0.402985 -15(TATGCACATGCATG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-34 chr11 30161007 30161207 + -1.45351 NA intron (NM_175836, intron 1 of 34) intron (NM_175836, intron 1 of 34) 37150 NM_009260 20742 Mm.123110 NM_009260 ENSMUSG00000020315 Sptbn1 9930031C03Rik|AL033301|SPTB2|Spnb-2|Spnb2|elf1|elf3|mKIAA4049 spectrin beta, non-erythrocytic 1 protein-coding 0.000000 0.447761 ePOU_nocontrol_ChIP_peaks_unique-65 chr14 11376535 11376735 + -1.45351 NA Intergenic RCHARR1|DNA|hAT-Charlie 94158 NR_105811 102466641 NR_105811 ENSMUSG00000099218 Mir5124b Gm27681|mmu-mir-5124b microRNA 5124b ncRNA 0.010000 0.388060 ePOU_nocontrol_ChIP_peaks_unique-87 chr16 93102097 93102297 + -1.45351 NA Intergenic Intergenic 250992 NR_040486 69857 Mm.81192 NR_040486 ENSMUSG00000100277 1810053B23Rik 1810008L18Rik|1810056K14Rik RIKEN cDNA 1810053B23 gene ncRNA 0.015000 0.343284 ePOU_nocontrol_ChIP_peaks_unique-181 chr6 94797603 94797803 + -1.45351 NA Intergenic L1MA4|LINE|L1 -97558 NM_001355269 16206 Mm.245210 NM_008377 ENSMUSG00000030029 Lrig1 D6Bwg0781e|Img|LIG-1 leucine-rich repeats and immunoglobulin-like domains 1 protein-coding 0.010000 0.348259 ePOU_nocontrol_ChIP_peaks_unique-160 chr4 146057049 146057249 + -1.45351 NA Intergenic L1_Mur2|LINE|L1 -10375 NR_030771 627585 Mm.424988 NM_001039233 Gm13034 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene pseudo 0.000000 0.268657 ePOU_nocontrol_ChIP_peaks_unique-47 chr11 106065825 106066025 + -1.45351 NA promoter-TSS (NM_027346) promoter-TSS (NM_027346) -166 NM_027346 70207 Mm.343857 NM_027346 ENSMUSG00000001983 Taco1 2310066I18Rik|Ccdc44 translational activator of mitochondrially encoded cytochrome c oxidase I protein-coding 0.055000 0.522388 ePOU_nocontrol_ChIP_peaks_unique-144 chr3 129831263 129831463 + -1.45351 NA promoter-TSS (NM_026578) promoter-TSS (NM_026578) 33 NM_026578 68147 Mm.24873 NM_026578 ENSMUSG00000028010 Gar1 AA409823|AI326794|C430047J18Rik|Nola1 GAR1 ribonucleoprotein protein-coding 0.120000 0.651741 Oct4_nocontrol_ChIP_peaks_unique-311 chr6 143144558 143144758 + -1.45351 NA intron (NR_153819, intron 5 of 8) intron (NR_153819, intron 5 of 8) 9273 NR_153819 102633311 Mm.333484 NR_153819 Gm31108 Gm31169 predicted gene, 31108 ncRNA 0.010000 0.328358 Oct4_nocontrol_ChIP_peaks_unique-198 chr2 17871903 17872103 + -1.45351 NA Intergenic Intergenic 124955 NM_026627 68231 Mm.23887 NM_026627 ENSMUSG00000062651 H2al2a 1700113O17Rik|H2A.Bbd|H2A.L.2|H2afb1|H2al2|TSEG-1|Tseg1 H2A histone family member L2A protein-coding 0.000000 0.407960 ePOU_nocontrol_ChIP_peaks_unique-26 chr10 105841210 105841410 + -1.45351 NA promoter-TSS (NM_025602) promoter-TSS (NM_025602) 70 NM_001359640 216292 Mm.250875 NM_207522 ENSMUSG00000036009 Mettl25 - methyltransferase like 25 protein-coding 0.085000 0.701493 Oct4_nocontrol_ChIP_peaks_unique-240 chr2 157164596 157164796 + -1.45351 NA intron (NM_011249, intron 16 of 21) intron (NM_011249, intron 16 of 21) -29600 NM_018851 56045 Mm.248478 NM_018851 ENSMUSG00000027639 Samhd1 E330031J07Rik|Mg11|mSAMHD1 SAM domain and HD domain, 1 protein-coding 0.005000 0.373134 -13(CATGCATATGCACA,+,0.00),-13(CATGCATATGCACA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-286 chr5 72464249 72464449 + -1.45351 NA intron (NM_016869, intron 2 of 21) intron (NM_016869, intron 2 of 21) 39859 NM_016869 53419 Mm.332425 NM_016869 ENSMUSG00000005220 Corin AV273130|Lrp4 corin, serine peptidase protein-coding 0.000000 0.223881 -41(TATGAATATGGACT,+,0.00),62(CATGTATATTCATG,+,0.00),62(CATGTATATTCATG,-,0.00) -87(TCATTTTCTTTTAAAA,+,0.00),-58(TTTTTATATTGTTAAT,+,0.00),3(TTATGCTCATTCATAT,+,0.00),67(ATATTCATGAAAAAAA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-24 chr1 137378666 137378866 + -1.45351 NA Intergenic Intergenic -418318 NM_030676 26424 Mm.16794 NM_030676 ENSMUSG00000026398 Nr5a2 AU020803|D1Ertd308e|Ftf|LRH-1|UF2-H3B nuclear receptor subfamily 5, group A, member 2 protein-coding 0.005000 0.457711 -25(CCATTATTATGCAAAG,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-352 chr9 44921143 44921343 + -1.45351 NA promoter-TSS (NM_013795) promoter-TSS (NM_013795) -501 NM_013795 27425 Mm.14663 NM_013795 ENSMUSG00000038717 Atp5l 4933437C06Rik|Atp5mg ATP synthase, H+ transporting, mitochondrial F0 complex, subunit G protein-coding 0.030000 0.457711 ePOU_nocontrol_ChIP_peaks_unique-21 chr10 56158663 56158863 + -1.45351 NA intron (NM_001033385, intron 17 of 32) intron (NM_001033385, intron 17 of 32) 51846 NM_001163833 73390 Mm.181475 NM_133751 ENSMUSG00000047669 Msl3l2 1700060H10Rik MSL3 like 2 protein-coding 0.000000 0.318408 -100(AATGAATTAGTCATA,+,0.00),-100(AATGAATTAGTCATA,-,0.00) 60(TAACTGCCTTTCAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-7 chr1 26283029 26283229 + -1.45351 NA Intergenic Intergenic 404331 NM_001033764 210940 Mm.297614 NM_001033764 ENSMUSG00000073722 4931408C20Rik - RIKEN cDNA 4931408C20 gene protein-coding 0.005000 0.373134 -36(CTCTTGTCTTTCAAAC,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-51 chr12 75026383 75026583 + -1.45351 NA intron (NM_172805, intron 7 of 10) intron (NM_172805, intron 7 of 10) 150849 NM_172805 238271 Mm.44465 NM_172805 ENSMUSG00000034402 Kcnh5 Eag2 potassium voltage-gated channel, subfamily H (eag-related), member 5 protein-coding 0.005000 0.348259 ePOU_nocontrol_ChIP_peaks_unique-120 chr2 79635254 79635454 + -1.45351 NA promoter-TSS (NM_080558) promoter-TSS (NM_080558) -71 NM_080558 70599 Mm.272881 NM_080558 ENSMUSG00000027007 Itprid2 5730488C15Rik|CS-1|CS1|KRAP|SPAG13|Ssfa2|mKIAA1927 ITPR interacting domain containing 2 protein-coding 0.115000 0.800995 ePOU_nocontrol_ChIP_peaks_unique-174 chr6 31146900 31147100 + -1.45351 NA intron (NR_110471, intron 2 of 3) intron (NR_110471, intron 2 of 3) 71474 NR_110471 232685 Mm.443019 NM_144555 ENSMUSG00000044471 Lncpint Lincpint|MNCb-1768|Pint|linc-Pint long non-protein coding RNA, Trp53 induced transcript ncRNA 0.015000 0.621891 74(TCTGCATATGCATG,+,0.00),74(TCTGCATATGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-146 chr16 17630157 17630357 + -1.45351 NA intron (NM_001164611, intron 9 of 18) intron (NM_001164611, intron 9 of 18) 10903 NM_001164611 77626 Mm.34659 NM_029945 ENSMUSG00000005899 Smpd4 4122402O22Rik sphingomyelin phosphodiesterase 4 protein-coding 0.000000 0.417910 -36(TTTGAATAATGCAAA,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-8 chr1 74304795 74304995 + -1.45351 NA promoter-TSS (NM_027154) promoter-TSS (NM_027154) -559 NM_027154 69660 Mm.261182 NM_027154 ENSMUSG00000006301 Tmbim1 2310061B02Rik|AA960455|AU024746|C78899|RECS1|Tmbib1|mKIAA4161 transmembrane BAX inhibitor motif containing 1 protein-coding 0.010000 0.278607 ePOU_nocontrol_ChIP_peaks_unique-83 chr16 13818977 13819177 + -1.45351 NA promoter-TSS (NM_001346110) promoter-TSS (NM_001346110) -174 NM_010946 18203 Mm.380410 NM_010946 ENSMUSG00000022681 Ntan1 PNAA|PNAD N-terminal Asn amidase protein-coding 0.070000 0.611940 Oct4_nocontrol_ChIP_peaks_unique-57 chr10 109928904 109929104 + -1.45351 NA intron (NM_001368815, intron 1 of 37) intron (NM_001368815, intron 1 of 37) 71386 NM_001081035 260315 Mm.225050 NM_177797 ENSMUSG00000020181 Nav3 4732483H20Rik|9630020C08Rik|POMFIL1|Pomfil1p|mKIAA0938|unc53H3 neuron navigator 3 protein-coding 0.015000 0.407960 merged_common-102 chr2 179976840 179977040 + -1.45351 NA promoter-TSS (NR_033782) promoter-TSS (NR_033782) 87 NR_033782 66730 Mm.31773 NR_033782 ENSMUSG00000085704 4921531C22Rik - RIKEN cDNA 4921531C22 gene ncRNA 0.105000 0.711443 ePOU_nocontrol_ChIP_peaks_unique-203 chr8 25990084 25990284 + -1.45351 NA intron (NM_029037, intron 1 of 4) intron (NM_029037, intron 1 of 4) 3937 NM_029037 74653 Mm.17631 NM_029037 ENSMUSG00000037251 Pomk 4930444A02Rik|Sgk196 protein-O-mannose kinase protein-coding 0.040000 0.512438 Oct4_nocontrol_ChIP_peaks_unique-207 chr2 61720851 61721051 + -1.45351 NA intron (NM_021526, intron 2 of 11) intron (NM_021526, intron 2 of 11) 9257 NM_021526 59029 Mm.218198 NM_021526 ENSMUSG00000026914 Psmd14 2610312C03Rik|3200001M20Rik|AA986732|Pad1|Poh1|rpm11 proteasome (prosome, macropain) 26S subunit, non-ATPase, 14 protein-coding 0.020000 0.437811 -72(CATGTATATTCACA,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-155 chr4 88103457 88103657 + -1.45351 NA intron (NM_001081184, intron 1 of 43) intron (NM_001081184, intron 1 of 43) 8927 NM_001081184 230393 Mm.287210 NM_001081184 ENSMUSG00000038368 Focad - focadhesin protein-coding 0.000000 0.298507 -58(AAATTTTCATTCATAT,+,0.00),35(TTTTAGTCTTTTAAAG,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-173 chr5 148451521 148451721 + -1.45351 NA Intergenic B3A|SINE|B2 -51717 NM_007513 11987 Mm.275489 NM_007513 ENSMUSG00000041313 Slc7a1 4831426K01Rik|AI447493|Atrc-1|Atrc1|Cat1|Rec-1|Rev-1|mCAT-1 solute carrier family 7 (cationic amino acid transporter, y+ system), member 1 protein-coding 0.005000 0.427861 Oct4_nocontrol_ChIP_peaks_unique-103 chr13 35536897 35537097 + -1.45351 NA Intergenic MER63C|DNA|hAT-Blackjack -122865 NM_009881 12593 Mm.29002 NM_009881 ENSMUSG00000059288 Cdyl AI325931 chromodomain protein, Y chromosome-like protein-coding 0.025000 0.417910 82(AATACATATGCATG,+,0.00),82(AATACATATGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-141 chr15 76351507 76351707 + -1.45351 NA promoter-TSS (NM_025340) promoter-TSS (NM_025340) 313 NM_026859 68877 Mm.289680 NM_026859 ENSMUSG00000022553 Maf1 1110068E11Rik|AU042856 MAF1 homolog, negative regulator of RNA polymerase III protein-coding 0.110000 0.686567 ePOU_nocontrol_ChIP_peaks_unique-19 chr10 19015415 19015615 + -1.45351 NA promoter-TSS (NM_009397) promoter-TSS (NM_009397) -105 NM_009397 21929 Mm.116683 NM_009397 ENSMUSG00000019850 Tnfaip3 A20|Tnfip3 tumor necrosis factor, alpha-induced protein 3 protein-coding 0.110000 0.646766 ePOU_nocontrol_ChIP_peaks_unique-94 chr17 75551888 75552088 + -1.45351 NA promoter-TSS (NM_001357860) promoter-TSS (NM_001357860) -42 NM_133747 72722 Mm.24641 NM_133747 ENSMUSG00000002017 Fam98a 2810405J04Rik|AL024114 family with sequence similarity 98, member A protein-coding 0.075000 0.641791 Oct4_nocontrol_ChIP_peaks_unique-221 chr2 105261457 105261657 + -1.45351 NA intron (NM_001159638, intron 1 of 2) intron (NM_001159638, intron 1 of 2) 37215 NM_001159638 74088 Mm.46188 NM_028747 ENSMUSG00000055312 Them7 0610012H03Rik thioesterase superfamily member 7 protein-coding 0.040000 0.522388 Oct4_nocontrol_ChIP_peaks_unique-367 chr9 111013878 111014078 + -1.45351 NA Intergenic Intergenic -5314 NM_008522 17002 Mm.282359 NM_008522 ENSMUSG00000032496 Ltf Csp82|Lf|MMS10R|Ms10r lactotransferrin protein-coding 0.000000 0.462687 23(AGCTGCATGACAAAGC,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-203 chr2 45364283 45364483 + -1.45351 NA Intergenic Intergenic -246941 NM_001355288 24136 Mm.440702 NM_015753 ENSMUSG00000026872 Zeb2 9130203F04Rik|D130016B08Rik|SIP1|Zfhx1b|Zfx1b|Zfxh1b zinc finger E-box binding homeobox 2 protein-coding 0.015000 0.402985 Oct4_nocontrol_ChIP_peaks_unique-142 chr15 77163179 77163379 + -1.45351 NA intron (NM_175387, intron 2 of 12) intron (NM_175387, intron 2 of 12) -9434 NM_001358771 93686 Mm.202774 NM_053104 ENSMUSG00000033565 Rbfox2 Fbm2|Fxh|Hrnbp2|Rbm9 RNA binding protein, fox-1 homolog (C. elegans) 2 protein-coding 0.020000 0.447761 ePOU_nocontrol_ChIP_peaks_unique-163 chr5 30270416 30270616 + -1.45351 NA non-coding (NR_137634, exon 9 of 9) non-coding (NR_137634, exon 9 of 9) -10877 NM_001033460 381738 Mm.389604 NM_001033460 ENSMUSG00000073102 Drc1 Ccdc164|Gm1060|b2b1654Clo dynein regulatory complex subunit 1 protein-coding 0.015000 0.472637 Oct4_nocontrol_ChIP_peaks_unique-59 chr10 117839084 117839284 + -1.48444 NA intron (NM_024457, intron 1 of 7) B3|SINE|B2 6790 NM_024457 215449 Mm.233009 NM_024457 ENSMUSG00000052681 Rap1b 2810443E11Rik RAS related protein 1b protein-coding 0.005000 0.457711 merged_common-82 chr19 57885315 57885515 + -1.48444 NA intron (NM_181415, intron 26 of 28) intron (NM_181415, intron 26 of 28) -165752 NR_049196 100885835 NR_049196 ENSMUSG00000093757 Mir5623 Gm26068|mir-5623|mmu-mir-5623 microRNA 5623 ncRNA 0.020000 0.412935 ePOU_nocontrol_ChIP_peaks_unique-36 chr11 40394148 40394348 + -1.48444 NA Intergenic Intergenic 298434 NM_134017 108645 Mm.293771 NM_134017 ENSMUSG00000042032 Mat2b 1110064C04Rik|2410018D16Rik|AI182287|AU022853|MAT-II|MATIIbeta|TGR methionine adenosyltransferase II, beta protein-coding 0.005000 0.368159 merged_common-125 chr4 111822325 111822525 + -1.48444 NA intron (NM_026470, intron 11 of 12) intron (NM_026470, intron 11 of 12) 44828 NM_001357231 67946 Mm.275526 NM_026470 ENSMUSG00000034401 Spata6 1700062C23Rik|AI790763|Hash|KRP|Mash spermatogenesis associated 6 protein-coding 0.005000 0.293532 24(TATGCATATGCATA,+,0.00),24(TATGCATATGCATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-301 chr6 33454449 33454649 + -1.48444 NA intron (NM_009148, intron 9 of 17) intron (NM_009148, intron 9 of 17) 205421 NM_009148 20336 Mm.265512 NM_009148 ENSMUSG00000029763 Exoc4 C78892|Sec8|Sec8l1 exocyst complex component 4 protein-coding 0.010000 0.412935 Oct4_nocontrol_ChIP_peaks_unique-127 chr14 101210091 101210291 + -1.48444 NA Intergenic Intergenic -10122 NM_029680 76627 Mm.31415 NM_029680 ENSMUSG00000042888 Prr30 1700110M21Rik proline rich 30 protein-coding 0.015000 0.363184 6(CATGAATATGCAGT,+,0.00),6(CATGAATATGCAGT,-,0.00) -58(ATATGCAAAACAGGGG,-,0.00) merged_common-63 chr16 43573794 43573994 + -1.48444 NA intron (NM_001285805, intron 7 of 10) intron (NM_001285805, intron 7 of 10) -66761 NR_030576 100124467 NR_030576 ENSMUSG00000076372 Mir568 Mirn568|mmu-mir-568 microRNA 568 ncRNA 0.010000 0.467662 Oct4_nocontrol_ChIP_peaks_unique-84 chr12 39995893 39996093 + -1.48444 NA Intergenic Intergenic 41383 NM_007487 11861 Mm.12723 NM_007487 ENSMUSG00000047446 Arl4a AI467555|Arl4 ADP-ribosylation factor-like 4A protein-coding 0.005000 0.288557 merged_common-114 chr3 137686446 137686646 + -1.48444 NA Intergenic Intergenic 62874 NM_030143 73284 Mm.250841 NM_030143 ENSMUSG00000046818 Ddit4l 1700037B15Rik|1700108M02Rik|REDD2|RTP801L|Smhs1 DNA-damage-inducible transcript 4-like protein-coding 0.000000 0.358209 merged_common-103 chr3 24697079 24697279 + -1.50416 NA intron (NM_001326288, intron 1 of 13) intron (NM_001326288, intron 1 of 13) 86827 NM_001326288 635702 Mm.448351 NM_001326288 ENSMUSG00000102758 Naaladl2 2810043G22Rik|EG635702|Gm1021 N-acetylated alpha-linked acidic dipeptidase-like 2 protein-coding 0.000000 0.373134 -67(ATTAAAAAAAAAAAAA,-,0.00) merged_common-111 chr3 122145443 122145643 + -1.54415 NA intron (NM_007378, intron 32 of 49) intron (NM_007378, intron 32 of 49) -100014 NM_008129 14630 Mm.292676 NM_008129 ENSMUSG00000028124 Gclm AI649393|Gcmc|Glclr glutamate-cysteine ligase, modifier subunit protein-coding 0.000000 0.398010 -43(ATCAACATGACAATGA,-,0.00),-22(ATCAGCATGACAATGA,-,0.00),-2(ATCAACATGCCAATGG,-,0.00),19(ATCAACATAACAATGA,-,0.00),40(ATCATCATGACAATGA,-,0.00),61(ATCAACATGACAATGA,-,0.00),82(ATCAACATGACAATTA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-249 chr3 66388291 66388491 + -1.58741 NA Intergenic MT2A|LTR|ERVL -91554 NM_145820 72789 Mm.443526 NM_028357 ENSMUSG00000027831 Veph1 2810471M23Rik|Veph ventricular zone expressed PH domain-containing 1 protein-coding 0.000000 0.368159 -20(TATACATATGCACA,+,0.00),-20(TATACATATGCACA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-2 chr1 24443332 24443532 + -1.58741 NA intron (NM_007733, intron 14 of 50) L1ME3C|LINE|L1 144005 NM_007733 12823 Mm.329196 NM_007733 ENSMUSG00000026141 Col19a1 - collagen, type XIX, alpha 1 protein-coding 0.010000 0.283582 64(TCTTTATCATGCAATG,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-33 chr11 17257569 17257769 + -1.58741 NA promoter-TSS (NM_001330649) promoter-TSS (NM_001330649) -19 NM_001330649 57316 Mm.287982 NM_020558 ENSMUSG00000000581 C1d 1110036E10Rik|AI875855|SUN-CoR C1D nuclear receptor co-repressor protein-coding 0.110000 0.636816 Oct4_nocontrol_ChIP_peaks_unique-259 chr3 132252323 132252523 + -1.58741 NA Intergenic Intergenic 167131 NM_020265 56811 Mm.103593 NM_020265 ENSMUSG00000028031 Dkk2 - dickkopf WNT signaling pathway inhibitor 2 protein-coding 0.005000 0.268657 29(ATTTCTATAATAAAGA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-356 chr9 65629917 65630117 + -1.58741 NA promoter-TSS (NM_028030) promoter-TSS (NM_028030) -565 NM_028030 71973 Mm.29148 NM_028030 ENSMUSG00000032387 Rbpms2 2400008B06Rik|AI316523 RNA binding protein with multiple splicing 2 protein-coding 0.100000 0.641791 Oct4_nocontrol_ChIP_peaks_unique-322 chr7 111225730 111225930 + -1.58741 NA Intergenic (TATG)n|Simple_repeat|Simple_repeat -103155 NR_015573 75479 Mm.381620 NR_015573 ENSMUSG00000110424 1700012D14Rik - RIKEN cDNA 1700012D14 gene ncRNA 0.005000 0.298507 ePOU_nocontrol_ChIP_peaks_unique-92 chr17 64012642 64012842 + -1.58741 NA intron (NM_001037997, intron 12 of 18) intron (NM_001037997, intron 12 of 18) 37930 NR_130982 68771 Mm.443351 NR_130982 1110058D11Rik - RIKEN cDNA 1110058D11 gene ncRNA 0.000000 0.313433 49(CCTTTATAGTGTAAAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-31 chr11 6200209 6200409 + -1.58741 NA 5' UTR (NM_001363446, exon 1 of 5) 5' UTR (NM_001363446, exon 1 of 5) 142 NM_173748 209586 Mm.25321 NM_173748 ENSMUSG00000053838 Nudcd3 AI427847|BC024322|mKIAA1068 NudC domain containing 3 protein-coding 0.115000 0.592040 merged_common-51 chr15 28218724 28218924 + -1.58741 NA intron (NM_133365, intron 1 of 78) L1ME4a|LINE|L1 15058 NM_133365 110082 Mm.248464 NM_133365 ENSMUSG00000022262 Dnah5 AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603 dynein, axonemal, heavy chain 5 protein-coding 0.010000 0.313433 ePOU_nocontrol_ChIP_peaks_unique-60 chr13 23543510 23543710 + -1.58741 NA promoter-TSS (NM_178197) promoter-TSS (NM_178197) -166 NM_178197 319182 Mm.352273 NM_178197 ENSMUSG00000114456 Hist1h2bh H2b-221 histone cluster 1, H2bh protein-coding 0.030000 0.348259 merged_common-122 chr4 86272063 86272263 + -1.58741 NA intron (NM_029967, intron 12 of 27) LTR37A|LTR|ERV1 218188 NM_001368621 77739 Mm.331690 NM_029967 ENSMUSG00000066113 Adamtsl1 5930437A14Rik|6720426B09Rik|ADAMTSL-1 ADAMTS-like 1 protein-coding 0.015000 0.417910 58(CCATTTTCAAGCATAT,+,0.00) merged_common-22 chr11 83618086 83618286 + -1.58741 NA intron (NR_036452, intron 5 of 8) L1M4|LINE|L1 -25099 NM_009139 20305 Mm.137 NM_009139 ENSMUSG00000018927 Ccl6 MRP-1|Scya6|c10 chemokine (C-C motif) ligand 6 protein-coding 0.005000 0.358209 -38(TTATTTTTTTGCATAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-6 chr1 44766004 44766204 + -1.58741 NA exon (NM_028450, exon 6 of 11) exon (NM_028450, exon 6 of 11) -21155 NR_040602 75066 Mm.416932 NR_040602 ENSMUSG00000101701 4930521E06Rik - RIKEN cDNA 4930521E06 gene ncRNA 0.010000 0.358209 -18(ACTTTCATATGCAAAG,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-162 chr5 18389791 18389991 + -1.58741 NA Intergenic Intergenic -29478 NM_010305 14677 Mm.254629 NM_010305 ENSMUSG00000057614 Gnai1 AU046200|Gialpha1|Gnai-1 guanine nucleotide binding protein (G protein), alpha inhibiting 1 protein-coding 0.005000 0.343284 1(ATTTGCAAAACTGAAA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-227 chr9 110781654 110781854 + -1.58741 NA Intergenic CpG -16431 NM_153099 235628 Mm.292285 NM_153099 ENSMUSG00000044664 Prss42 Tessp2 protease, serine 42 protein-coding 0.085000 0.666667 ePOU_nocontrol_ChIP_peaks_unique-195 chr7 121034483 121034683 + -1.58741 NA 5' UTR (NM_021554, exon 1 of 5) 5' UTR (NM_021554, exon 1 of 5) 138 NM_021554 59052 Mm.29122 NM_021554 ENSMUSG00000030876 Mettl9 0610012D09Rik|AA517660|Drev|MNCb-5680 methyltransferase like 9 protein-coding 0.105000 0.731343 Oct4_nocontrol_ChIP_peaks_unique-214 chr2 72596246 72596446 + -1.58741 NA Intergenic Intergenic -107164 NR_040503 74541 Mm.410774 NR_040503 ENSMUSG00000085252 8430437L04Rik - RIKEN cDNA 8430437L04 gene ncRNA 0.010000 0.447761 Oct4_nocontrol_ChIP_peaks_unique-144 chr16 4408377 4408577 + -1.58741 NA intron (NM_009624, intron 2 of 10) MER2|DNA|TcMar-Tigger 12021 NM_001291910 11515 Mm.439750 NM_009624 ENSMUSG00000005580 Adcy9 AC9|ACtp10|AW125421|D16Wsu65e|mKIAA0520 adenylate cyclase 9 protein-coding 0.005000 0.358209 merged_common-158 chr9 61872394 61872594 + -1.58741 NA Intergenic Intergenic 42016 NM_018853 56040 Mm.3158 NM_018853 ENSMUSG00000007892 Rplp1 2410042H16Rik|Arpp1|C430017H15Rik ribosomal protein, large, P1 protein-coding 0.025000 0.447761 16(CATGCATATTTATG,+,0.00),16(CATGCATATTTATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-287 chr5 97776737 97776937 + -1.58741 NA Intergenic RLTR17B_Mm|LTR|ERVK 254180 NM_133738 71914 Mm.24842 NM_133738 ENSMUSG00000029338 Antxr2 2310046B19Rik|AW561899|CMG-2|CMG2|cI-35 anthrax toxin receptor 2 protein-coding 0.005000 0.318408 -18(TGTGCATATACATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-289 chr5 107900635 107900835 + -1.58741 NA intron (NM_016980, intron 1 of 7) CpG 207 NM_016980 100503670 Mm.277897 NM_016980 ENSMUSG00000058558 Rpl5 U21RNA ribosomal protein L5 protein-coding 0.115000 0.741294 Oct4_nocontrol_ChIP_peaks_unique-157 chr16 96973346 96973546 + -1.58741 NA intron (NM_031174, intron 3 of 32) intron (NM_031174, intron 3 of 32) 197289 NM_031174 13508 Mm.102437 NM_031174 ENSMUSG00000050272 Dscam 4932410A21Rik DS cell adhesion molecule protein-coding 0.010000 0.402985 merged_common-91 chr2 77270095 77270295 + -1.58741 NA intron (NM_175465, intron 1 of 17) hAT-N1_Mam|DNA|hAT? 10397 NM_175465 228071 Mm.27120 NM_175465 ENSMUSG00000042272 Sestd1 1500031J16Rik|A930010O20|Solo/Trio8 SEC14 and spectrin domains 1 protein-coding 0.010000 0.343284 -27(TAATTATTATGCAAAA,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-180 chr19 5087728 5087928 + -1.58741 NA promoter-TSS (NM_026553) promoter-TSS (NM_026553) -710 NM_026553 68090 Mm.44202 NM_026553 ENSMUSG00000024875 Yif1a 5330422J23Rik|54TM|Yif1|Yif1p Yip1 interacting factor homolog A (S. cerevisiae) protein-coding 0.045000 0.547264 Oct4_nocontrol_ChIP_peaks_unique-353 chr9 49760142 49760342 + -1.58741 NA intron (NM_001081445, intron 1 of 17) RLTR17B_Mm|LTR|ERVK 38827 NM_010875 17967 Mm.4974 NM_010875 ENSMUSG00000039542 Ncam1 CD56|E-NCAM|NCAM-1|Ncam neural cell adhesion molecule 1 protein-coding 0.005000 0.228856 84(TATACATATACATA,-,0.00) -33(ATTTGTAAAATAAATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-32 chr10 7792919 7793119 + -1.58741 NA exon (NM_026141, exon 1 of 13) exon (NM_026141, exon 1 of 13) 125 NM_026141 67418 Mm.38927 NM_026141 ENSMUSG00000015757 Ppil4 3732410E19Rik|3830425H19Rik|AI788954|AW146233|PPIase peptidylprolyl isomerase (cyclophilin)-like 4 protein-coding 0.080000 0.621891 Oct4_nocontrol_ChIP_peaks_unique-95 chr12 95707389 95707589 + -1.58741 NA intron (NM_201518, intron 1 of 1) intron (NM_201518, intron 1 of 1) 15263 NM_201518 399558 Mm.341948 NM_201518 ENSMUSG00000047414 Flrt2 - fibronectin leucine rich transmembrane protein 2 protein-coding 0.005000 0.343284 ePOU_nocontrol_ChIP_peaks_unique-112 chr2 9603560 9603760 + -1.58741 NA Intergenic Intergenic 274940 NM_001355111 14462 Mm.313866 NM_008091 ENSMUSG00000015619 Gata3 Gata-3|jal GATA binding protein 3 protein-coding 0.010000 0.452736 ePOU_nocontrol_ChIP_peaks_unique-222 chr9 65201428 65201628 + -1.58741 NA Intergenic B2_Mm1a|SINE|B2 -13162 NM_177460 214424 Mm.31129 NM_177460 ENSMUSG00000032392 Parp16 ARTD15|BC055447|C79952|PARP-16 poly (ADP-ribose) polymerase family, member 16 protein-coding 0.005000 0.422886 merged_common-43 chr14 57732699 57732899 + -1.58741 NA intron (NM_153382, intron 1 of 1) intron (NM_153382, intron 1 of 1) 1619 NM_153382 50523 Mm.347899 NM_015771 ENSMUSG00000021959 Lats2 4932411G09Rik|AV277261|AW228608 large tumor suppressor 2 protein-coding 0.015000 0.407960 -6(CATAAATTAGGCATG,+,0.00),-6(CATAAATTAGGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-145 chr16 16152377 16152577 + -1.58741 NA Intergenic B4A|SINE|B4 -5626 NM_001355731 224008 Mm.244703 NM_146068 ENSMUSG00000041974 Spidr 2310008H04Rik|Kiaa0146 scaffolding protein involved in DNA repair protein-coding 0.010000 0.402985 24(CATTCATATGCATA,+,0.00),24(CATTCATATGCATA,-,0.00) 23(CCATTCATATGCATAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-112 chr13 97538147 97538347 + -1.58741 NA Intergenic Intergenic -21753 NR_046157 328314 Mm.138047 NR_046157 ENSMUSG00000110235 Gm5086 B230311A21|EG328314 predicted gene 5086 ncRNA 0.015000 0.398010 Oct4_nocontrol_ChIP_peaks_unique-166 chr17 51539164 51539364 + -1.58741 NA intron (NR_037264, intron 3 of 4) intron (NR_037264, intron 3 of 4) -90995 NR_046166 328837 Mm.236143 NR_046166 ENSMUSG00000117204 C330011F03Rik C330011F03 RIKEN cDNA C330011F03 gene ncRNA 0.010000 0.278607 86(TTTGCATATTCATA,+,0.00),86(TTTGCATATTCATA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-131 chr2 157457396 157457596 + -1.58741 NA intron (NM_001025395, intron 4 of 13) CpG 33203 NM_001025395 20779 Mm.22845 NM_009271 ENSMUSG00000027646 Src AW259666|pp60c-src Rous sarcoma oncogene protein-coding 0.060000 0.616915 ePOU_nocontrol_ChIP_peaks_unique-158 chr4 133132224 133132424 + -1.58741 NA intron (NM_153423, intron 1 of 8) intron (NM_153423, intron 1 of 8) 1691 NM_153423 242687 Mm.23566 NM_153423 ENSMUSG00000028868 Wasf2 AW742646|D4Ertd13e|WAVE2 WAS protein family, member 2 protein-coding 0.015000 0.457711 merged_common-72 chr18 6934167 6934367 + -1.58741 NA TTS (NM_177595) TTS (NM_177595) 70512 NM_177595 210719 Mm.257186 NM_177595 ENSMUSG00000061013 Mkx 9430023B20Rik|Irxl1 mohawk homeobox protein-coding 0.000000 0.323383 -14(CATGAATATGCAAA,+,0.00),-14(CATGAATATGCAAA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-186 chr19 24451563 24451763 + -1.58741 NA intron (NM_008846, intron 1 of 14) intron (NM_008846, intron 1 of 14) 25811 NM_026520 68034 Mm.440181 NM_026520 ENSMUSG00000074922 Fam122a 2410124L17Rik|2900009I07Rik|Gm9849 family with sequence similarity 122, member A protein-coding 0.010000 0.373134 Oct4_nocontrol_ChIP_peaks_unique-358 chr9 81538506 81538706 + -1.58741 NA Intergenic Intergenic -93324 NR_040394 319405 Mm.246494 NR_040393 ENSMUSG00000097466 D430036J16Rik - RIKEN cDNA D430036J16 gene ncRNA 0.000000 0.373134 Oct4_nocontrol_ChIP_peaks_unique-233 chr2 126932954 126933154 + -1.58741 NA 5' UTR (NM_023220, exon 1 of 15) 5' UTR (NM_023220, exon 1 of 15) 181 NM_023220 66552 Mm.269928 NM_023220 ENSMUSG00000027366 Sppl2a 2010106G01Rik|C130089K23Rik signal peptide peptidase like 2A protein-coding 0.080000 0.696517 Oct4_nocontrol_ChIP_peaks_unique-69 chr11 69605852 69606052 + -1.58741 NA promoter-TSS (NM_013415) promoter-TSS (NM_013415) 8 NM_013415 11932 Mm.235204 NM_013415 ENSMUSG00000041329 Atp1b2 Amog|Atpb-2 ATPase, Na+/K+ transporting, beta 2 polypeptide protein-coding 0.045000 0.651741 ePOU_nocontrol_ChIP_peaks_unique-184 chr6 141026801 141027001 + -1.58741 NA Intergenic Intergenic -222368 NM_018779 54611 Mm.103728 NM_018779 ENSMUSG00000041741 Pde3a A930022O17Rik|C87899 phosphodiesterase 3A, cGMP inhibited protein-coding 0.005000 0.353234 -27(ACTGCATATTAATG,-,0.00) -73(TCATAGCCATTTAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-331 chr8 67972256 67972456 + -1.58741 NA intron (NM_177698, intron 1 of 14) intron (NM_177698, intron 1 of 14) 2218 NM_177698 234353 Mm.32525 NM_027626 ENSMUSG00000030465 Psd3 4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D pleckstrin and Sec7 domain containing 3 protein-coding 0.010000 0.402985 19(CATGCATATTCAAG,+,0.00),19(CATGCATATTCAAG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-129 chr2 152180606 152180806 + -1.58741 NA Intergenic Intergenic 37097 NM_009328 21407 Mm.3881 NM_009328 ENSMUSG00000068079 Tcf15 Meso1|bHLH-EC2 transcription factor 15 protein-coding 0.015000 0.636816 Oct4_nocontrol_ChIP_peaks_unique-196 chr2 11441478 11441678 + -1.58741 NA Intergenic B4|SINE|B4 -43078 NR_040615 77543 Mm.490670 NR_040615 ENSMUSG00000102674 8030442B05Rik - RIKEN cDNA 8030442B05 gene ncRNA 0.010000 0.507463 ePOU_nocontrol_ChIP_peaks_unique-200 chr8 7095728 7095928 + -1.58741 NA Intergenic Intergenic 1565414 NM_001368299 13642 Mm.209813 NM_010111 ENSMUSG00000001300 Efnb2 ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1 ephrin B2 protein-coding 0.005000 0.303483 -1(ATTTGCATAAAAATGA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-341 chr8 111394521 111394721 + -1.61834 NA promoter-TSS (NM_178086) promoter-TSS (NM_178086) -800 NM_178086 338521 Mm.41083 NM_178086 ENSMUSG00000033579 Fa2h FAAH|Faxdc1|G630055L08Rik fatty acid 2-hydroxylase protein-coding 0.015000 0.447761 merged_common-81 chr19 53220215 53220415 + -1.63116 NA intron (NM_001164099, intron 2 of 14) intron (NM_001164099, intron 2 of 14) 34890 NR_036590 69319 Mm.57452 NR_036590 ENSMUSG00000118314 1700001K23Rik - RIKEN cDNA 1700001K23 gene ncRNA 0.005000 0.353234 merged_common-19 chr11 5237888 5238088 + -1.64968 NA intron (NM_032396, intron 3 of 8) intron (NM_032396, intron 3 of 8) 23622 NM_032396 84035 Mm.209989 NM_032396 ENSMUSG00000020393 Kremen1 AV002070|Kremen|Krm1 kringle containing transmembrane protein 1 protein-coding 0.010000 0.417910 -64(TATGCATATGCACA,+,0.00),-64(TATGCATATGCACA,-,0.00),-38(CATACATATGAATA,+,0.00),-38(CATACATATGAATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-325 chr7 135395091 135395291 + -1.65823 NA Intergenic Intergenic -15176 NM_183193 270004 Mm.132547 NM_183193 ENSMUSG00000048377 Foxi2 B130055A05Rik forkhead box I2 protein-coding 0.000000 0.313433 4(CATGCAAAATGCAAA,+,0.00) 30(AATGCATATGCATG,+,0.00),30(AATGCATATGCATG,-,0.00),48(TATGAATATGCAAA,+,0.00),48(TATGAATATGCAAA,-,0.00) -3(GAAATGTCATGCAAAA,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-229 chr2 122627434 122627634 + -1.66574 NA Intergenic RMER12|LTR|ERVK -3091 NM_001033256 214616 Mm.271306 NM_001033256 Spata5l1 AV141009|C130039A10Rik spermatogenesis associated 5-like 1 protein-coding 0.000000 0.388060 -84(GCATTATCTTCCAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-49 chr10 68165662 68165862 + -1.66574 NA intron (NM_023598, intron 4 of 9) intron (NM_023598, intron 4 of 9) 112964 NM_023598 71371 Mm.440357 NM_023598 ENSMUSG00000019947 Arid5b 4930580B11|5430435G07Rik|AI467247|Desrt|Mrf2|Mrf2alpha|Mrf2beta AT rich interactive domain 5B (MRF1-like) protein-coding 0.000000 0.368159 40(ATATTATCATGCAAAT,+,0.00) merged_common-83 chr19 59954663 59954863 + -1.66574 NA Intergenic Intergenic -11109 NM_001164367 74998 Mm.24167 NM_001033172 ENSMUSG00000040022 Rab11fip2 4930470G04Rik|A830046J09Rik|AW558126|Nrip11 RAB11 family interacting protein 2 (class I) protein-coding 0.005000 0.308458 -9(TGTTTGTCATGCAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-269 chr4 57661419 57661619 + -1.66574 NA intron (NM_172868, intron 3 of 5) RLTR22_Mus|LTR|ERVK 93271 NM_172868 242481 Mm.331630 NM_172868 ENSMUSG00000090053 Palm2 53-H12|B130066I24|R75368|pEN70 paralemmin 2 protein-coding 0.010000 0.378109 Oct4_nocontrol_ChIP_peaks_unique-246 chr3 21550329 21550529 + -1.66574 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -526223 NM_030732 81004 Mm.202966 NM_030732 ENSMUSG00000027630 Tbl1xr1 8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1 transducin (beta)-like 1X-linked receptor 1 protein-coding 0.000000 0.343284 5(TGTAAATATGCATA,+,0.00),5(TGTAAATATGCATA,-,0.00),19(TATGCATATGCACA,+,0.00),19(TATGCATATGCACA,-,0.00) -4(GTATTTATATGTAAAT,+,0.00) merged_common-90 chr2 75219384 75219584 + -1.66574 NA Intergenic Intergenic 224695 NR_040635 77269 Mm.389278 NR_040635 9430019J16Rik - RIKEN cDNA 9430019J16 gene ncRNA 0.005000 0.278607 67(TTTTCCATCACAATAA,-,0.00) merged_common-116 chr4 23983882 23984082 + -1.66574 NA Intergenic Intergenic -512469 NR_149739 212377 Mm.120919 NM_199467 ENSMUSG00000045751 Mms22l F730047E07Rik|Gm134 MMS22-like, DNA repair protein protein-coding 0.000000 0.248756 Oct4_nocontrol_ChIP_peaks_unique-306 chr6 99310177 99310377 + -1.66574 NA intron (NM_053202, intron 1 of 18) intron (NM_053202, intron 1 of 18) -43762 NM_001197321 108655 Mm.234965 NM_053202 ENSMUSG00000030067 Foxp1 3110052D19Rik|4932443N09Rik|AI461938|AW494214 forkhead box P1 protein-coding 0.005000 0.398010 merged_common-147 chr8 15355038 15355238 + -1.66574 NA Intergenic Intergenic 297485 NM_008664 17930 Mm.272115 NM_008664 ENSMUSG00000031461 Myom2 AW146149 myomesin 2 protein-coding 0.010000 0.407960 28(AATGCATAATAATG,-,0.00) -6(GCAGTGACATGTAAAT,+,0.00) merged_common-115 chr3 146693550 146693750 + -1.66574 NA Intergenic Intergenic -8165 NM_001368726 75015 Mm.250432 NM_029144 ENSMUSG00000048652 4930503B20Rik 1700013A07Rik|1700095G21Rik|4930483N21Rik|Gm1652|Samd13 RIKEN cDNA 4930503B20 gene protein-coding 0.010000 0.457711 73(TAATTCCCAGGCAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-330 chr8 67734507 67734707 + -1.66574 NA intron (NM_177698, intron 11 of 14) intron (NM_177698, intron 11 of 14) 83688 NM_027626 234353 Mm.32525 NM_027626 ENSMUSG00000030465 Psd3 4931420C21Rik|AI661273|BC003498|D430018P08|EFA6D pleckstrin and Sec7 domain containing 3 protein-coding 0.005000 0.422886 8(CATGCATATGCACA,+,0.00),8(CATGCATATGCACA,-,0.00),20(CATACATATGCATG,+,0.00),20(CATACATATGCATG,-,0.00) 1(GCTTTTACATGCATAT,+,0.00) merged_common-88 chr2 59033767 59033967 + -1.72132 NA intron (NM_001001178, intron 1 of 14) RLTR17B_Mm|LTR|ERVK 126816 NM_001001178 227933 Mm.330234 NM_177650 ENSMUSG00000036641 Ccdc148 5830402J09|Gm38473 coiled-coil domain containing 148 protein-coding 0.000000 0.278607 -28(CATGCATATGCATA,+,0.00),-28(CATGCATATGCATA,-,0.00),-22(TATGCATATTTACT,+,0.00),-22(TATGCATATTTACT,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-98 chr18 13845459 13845659 + -1.72132 NA exon (NM_001360804, exon 4 of 8) exon (NM_001360804, exon 4 of 8) 127174 NM_145492 225207 Mm.40325 NM_145492 ENSMUSG00000024420 Zfp521 B930086A16Rik|Evi3|Znf521 zinc finger protein 521 protein-coding 0.025000 0.447761 merged_common-151 chr8 111939836 111940036 + -1.76442 NA promoter-TSS (NM_026693) promoter-TSS (NM_026693) -767 NM_026693 93739 Mm.371666 NM_026693 ENSMUSG00000031950 Gabarapl2 0610012F20Rik|2900019O08Rik|AI173605|GATE-16|Gef2 gamma-aminobutyric acid (GABA) A receptor-associated protein-like 2 protein-coding 0.030000 0.507463 -27(ACTGCATATTCATG,+,0.00),-27(ACTGCATATTCATG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-46 chr11 105678704 105678904 + -1.82470 NA intron (NM_181071, intron 3 of 25) RLTR13D3|LTR|ERVK 88818 NM_181071 77097 Mm.22501 NM_175492 ENSMUSG00000053580 Tanc2 3526402J09Rik|5730590C14Rik tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2 protein-coding 0.000000 0.417910 -27(CATGAATAATGCAGT,+,0.00),-27(CATGAATAATGCAGT,-,0.00) merged_common-110 chr3 108562469 108562669 + -1.82470 NA promoter-TSS (NM_026198) promoter-TSS (NM_026198) -103 NM_026198 67495 Mm.32615 NM_026198 ENSMUSG00000068732 Tmem167b 2010200O16Rik transmembrane protein 167B protein-coding 0.050000 0.557214 49(GTTTGAAAAATAAAGG,-,0.00) merged_common-79 chr19 22703955 22704155 + -1.82470 NA intron (NM_001362512, intron 3 of 8) intron (NM_001362512, intron 3 of 8) 11454 NM_001362512 226025 Mm.131943 NM_177341 ENSMUSG00000052387 Trpm3 6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2 transient receptor potential cation channel, subfamily M, member 3 protein-coding 0.015000 0.437811 Oct4_nocontrol_ChIP_peaks_unique-268 chr4 57511349 57511549 + -1.82470 NA Intergenic Intergenic -56799 NM_001304544 677884 Mm.331630 NM_001304544 ENSMUSG00000089945 Pakap AF064781|AKAP-2|AKAP-KL|Akap2|Gm20459|PRKA2|Palm2-Akap2|Palm2Akap2|Palm2akap2 paralemmin A kinase anchor protein protein-coding 0.015000 0.412935 -20(TTTGCATATGCACA,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-138 chr15 53523624 53523824 + -1.82470 NA intron (NM_177225, intron 4 of 4) intron (NM_177225, intron 4 of 4) 90555 NR_039538 100628567 NR_039538 ENSMUSG00000104794 Mir28c mmu-mir-28c microRNA 28c ncRNA 0.000000 0.313433 merged_common-96 chr2 117271272 117271472 + -1.82470 NA 3' UTR (NM_026620, exon 8 of 8) 3' UTR (NM_026620, exon 8 of 8) 21633 NM_026620 68215 Mm.219389 NM_026620 ENSMUSG00000027349 Fam98b 2610510H03Rik family with sequence similarity 98, member B protein-coding 0.005000 0.328358 merged_common-136 chr5 142401331 142401531 + -1.82470 NA promoter-TSS (NM_199068) promoter-TSS (NM_199068) -66 NM_199068 17425 Mm.24214 NM_010812 ENSMUSG00000056493 Foxk1 A630048H08Rik|AI463295|Gm10868|Mnf forkhead box K1 protein-coding 0.150000 0.771144 merged_common-80 chr19 23468032 23468232 + -1.82470 NA Intergenic Intergenic -19810 NM_174857 71738 Mm.50841 NM_174857 ENSMUSG00000033207 Mamdc2 1200015L10Rik|AI591564|mamcan MAM domain containing 2 protein-coding 0.000000 0.358209 -59(TCATTCTCATGCAATT,+,0.00) merged_common-52 chr15 29529864 29530064 + -1.82470 NA Intergenic Intergenic 183440 NR_039542 100628607 NR_039542 ENSMUSG00000092639 Mir3964 mmu-mir-3964|mu-mir-3964 microRNA 3964 ncRNA 0.005000 0.253731 Oct4_nocontrol_ChIP_peaks_unique-178 chr18 65239649 65239849 + -1.82470 NA intron (NR_105742, intron 4 of 6) Lx10|LINE|L1 -9112 NR_029600 387231 NR_029600 ENSMUSG00000065402 Mir122 Mir122a|Mirn122a|mir-122|mmu-mir-122 microRNA 122 ncRNA 0.005000 0.368159 ePOU_nocontrol_ChIP_peaks_unique-85 chr16 43800330 43800530 + -1.82470 NA intron (NM_007877, intron 2 of 6) intron (NM_007877, intron 2 of 6) 38209 NM_007877 13490 Mm.439735 NM_007877 ENSMUSG00000022705 Drd3 D3R dopamine receptor D3 protein-coding 0.010000 0.432836 Oct4_nocontrol_ChIP_peaks_unique-39 chr10 26245751 26245951 + -1.82470 NA intron (NM_001013766, intron 6 of 7) Lx9|LINE|L1 16144 NM_001115154 268288 Mm.213322 NM_001013766 ENSMUSG00000051354 Samd3 Gm623 sterile alpha motif domain containing 3 protein-coding 0.010000 0.383085 -13(CATGCATATTCATA,+,0.00),-13(CATGCATATTCATA,-,0.00) 42(ATACTGCCATGCATAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-355 chr9 64361640 64361840 + -1.82470 NA Intergenic Intergenic -20483 NM_001001295 213550 Mm.268341 NM_172519 ENSMUSG00000032396 Dis3l AV340375 DIS3 like exosome 3'-5' exoribonuclease protein-coding 0.010000 0.407960 ePOU_nocontrol_ChIP_peaks_unique-216 chr8 124219169 124219369 + -1.82470 NA Intergenic L1MC4|LINE|L1 -12125 NM_139272 108148 Mm.33808 NM_139272 ENSMUSG00000089704 Galnt2 AI480629 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 0.005000 0.348259 ePOU_nocontrol_ChIP_peaks_unique-107 chr19 9066114 9066314 + -1.82470 NA intron (NM_001286518, intron 6 of 6) MIR|SINE|MIR 21742 NM_011681 22287 Mm.2258 NM_011681 ENSMUSG00000024653 Scgb1a1 CC10|CC16|CCSP|PCB-BP|UG|UGB|Utg secretoglobin, family 1A, member 1 (uteroglobin) protein-coding 0.010000 0.432836 -40(TTTTATTCATGTAAAA,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-179 chr6 83598680 83598880 + -1.82470 NA Intergenic Intergenic -26276 NM_024239 70527 Mm.32801 NM_024239 ENSMUSG00000006906 Stambp 5330424L14Rik|5730422L11Rik|AW107289|Amsh|mKIAA4198 STAM binding protein protein-coding 0.025000 0.477612 merged_common-154 chr9 22848930 22849130 + -1.82470 NA intron (NM_001360258, intron 20 of 21) intron (NM_001360258, intron 20 of 21) 373315 NM_001360258 319845 Mm.176725 NM_178415 ENSMUSG00000035919 Bbs9 E130103I17Rik Bardet-Biedl syndrome 9 (human) protein-coding 0.000000 0.308458 Oct4_nocontrol_ChIP_peaks_unique-105 chr13 51135469 51135669 + -1.82470 NA intron (NM_011462, intron 1 of 3) intron (NM_011462, intron 1 of 3) 1251 NM_011462 20729 Mm.188432 NM_011462 ENSMUSG00000021395 Spin1 Spin spindlin 1 protein-coding 0.010000 0.368159 62(ATCTCCATCACAATCC,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-5 chr1 24134705 24134905 + -1.82792 NA Intergenic Lx9|LINE|L1 -34464 NM_026604 68187 Mm.87130 NM_026604 ENSMUSG00000026153 Fam135a 4921533L14Rik|AI256732|AI835491 family with sequence similarity 135, member A protein-coding 0.000000 0.348259 20(TATACATATGCATT,+,0.00),20(TATACATATGCATT,-,0.00) merged_common-145 chr8 6027792 6027992 + -1.82792 NA Intergenic Intergenic -922605 NM_011388 20494 Mm.3500 NM_011388 ENSMUSG00000023073 Slc10a2 9130221J18Rik|AI605518|ASBT|IBAT|ISBT solute carrier family 10, member 2 protein-coding 0.000000 0.353234 21(CATTCATATGCATA,+,0.00),21(CATTCATATGCATA,-,0.00) merged_common-143 chr7 113638343 113638543 + -1.82792 NA Intergenic Intergenic -73456 NR_126544 69295 Mm.396150 NR_126544 ENSMUSG00000084984 Far1os 1700006P19Rik fatty acyl CoA reductase 1, opposite strand ncRNA 0.015000 0.417910 Oct4_nocontrol_ChIP_peaks_unique-193 chr2 5371838 5372038 + -1.82792 NA intron (NM_001290374, intron 2 of 9) RSINE1|SINE|B4 -7452 NR_030601 100124465 NR_030601 ENSMUSG00000078031 Mir466d Mirn466d microRNA 466d ncRNA 0.000000 0.412935 -3(CATGCATATTCATG,+,0.00),-3(CATGCATATTCATG,-,0.00) merged_common-40 chr13 98832986 98833186 + -1.82792 NA Intergenic Intergenic -17637 NM_172591 218503 Mm.23928 NM_172591 ENSMUSG00000041685 Fcho2 5832424M12Rik|AA387320 FCH domain only 2 protein-coding 0.000000 0.293532 -43(TCCTTGTCATGTTAAT,+,0.00),72(ACATTTTCATTATAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-253 chr3 105427751 105427951 + -1.82792 NA Intergenic Intergenic -24039 NM_001039347 56543 Mm.44530 NM_019931 ENSMUSG00000040896 Kcnd3 AW045978|Kncd3|Kv4.3 potassium voltage-gated channel, Shal-related family, member 3 protein-coding 0.000000 0.402985 merged_common-53 chr15 39267272 39267472 + -1.84453 NA intron (NM_001256382, intron 1 of 26) RLTR21|LTR|ERVK 69086 NM_001256382 116838 Mm.309296 NM_053271 ENSMUSG00000037386 Rims2 2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751 regulating synaptic membrane exocytosis 2 protein-coding 0.010000 0.398010 28(TATGCATATTCATA,+,0.00),28(TATGCATATTCATA,-,0.00) merged_common-49 chr15 3977293 3977493 + -1.86377 NA intron (NM_134099, intron 2 of 6) intron (NM_134099, intron 2 of 6) 2180 NM_134099 106052 Mm.234191 NM_134099 ENSMUSG00000022184 Fbxo4 1700096C12Rik|AI851261|AW494535|Fbx4 F-box protein 4 protein-coding 0.000000 0.298507 62(TATGAATATGCATA,+,0.00),62(TATGAATATGCATA,-,0.00),68(TATGCATATACAAT,-,0.00) -90(ACTTTCTCATGTACAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-104 chr18 44380449 44380649 + -1.89633 NA promoter-TSS (NM_027490) promoter-TSS (NM_027490) 49 NM_027490 70640 Mm.87629 NM_027490 ENSMUSG00000024472 Dcp2 2410015D23Rik|5730537H01Rik|AL118268 decapping mRNA 2 protein-coding 0.115000 0.741294 Oct4_nocontrol_ChIP_peaks_unique-219 chr2 103669792 103669992 + -1.89633 NA intron (NM_178890, intron 1 of 16) intron (NM_178890, intron 1 of 16) 91378 NM_153126 98956 Mm.288005 NM_153126 ENSMUSG00000027185 Nat10 AI429152 N-acetyltransferase 10 protein-coding 0.005000 0.388060 42(CAATTGTGATGCATAG,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-57 chr12 103388617 103388817 + -1.89633 NA promoter-TSS (NM_026580) promoter-TSS (NM_026580) 35 NM_001177841 68149 Mm.127378 NM_026580 ENSMUSG00000021203 Otub2 2010015L18Rik|4930586I02Rik|AI413508|AW557219|OTB2|OTU2 OTU domain, ubiquitin aldehyde binding 2 protein-coding 0.115000 0.696517 Oct4_nocontrol_ChIP_peaks_unique-150 chr16 37669771 37669971 + -1.89633 NA Intergenic RLTR21|LTR|ERVK -15503 NM_026610 68194 Mm.379154 NM_026610 ENSMUSG00000022820 Ndufb4 0610006N12Rik|1300010H20Rik NADH:ubiquinone oxidoreductase subunit B4 protein-coding 0.005000 0.393035 Oct4_nocontrol_ChIP_peaks_unique-250 chr3 86223947 86224147 + -1.89633 NA promoter-TSS (NM_001077687) promoter-TSS (NM_001077687) -643 NM_001077688 80877 Mm.439825 NM_030695 ENSMUSG00000028080 Lrba C80285|D3Ertd775e|Lab300|Lba LPS-responsive beige-like anchor protein-coding 0.155000 0.716418 Oct4_nocontrol_ChIP_peaks_unique-209 chr2 64123689 64123889 + -1.89633 NA Intergenic Intergenic -25751 NM_021716 60344 Mm.130769 NM_021716 ENSMUSG00000075324 Fign Fgn|fi|fidget fidgetin protein-coding 0.005000 0.393035 34(CCTGCATATTCATA,+,0.00),34(CCTGCATATTCATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-243 chr2 180024689 180024889 + -1.89633 NA promoter-TSS (NM_177727) promoter-TSS (NM_177727) -198 NM_177727 241846 Mm.21577 NM_177727 ENSMUSG00000039108 Lsm14b 9430078B04|BC040823 LSM family member 14B protein-coding 0.130000 0.731343 Oct4_nocontrol_ChIP_peaks_unique-345 chr9 7837238 7837438 + -1.89633 NA promoter-TSS (NM_007465) promoter-TSS (NM_007465) -281 NM_007465 11797 Mm.335659 NM_007465 ENSMUSG00000057367 Birc2 AW146227|Api1|Api2|Birc3|C-IAP1|C330006D17Rik|HIAP1|HIAP2|IAP1|IAP2|MIAP1|MIAP2|MIHB|MIHC|RNF48|cIAP1|cIAP2|mcIAP1 baculoviral IAP repeat-containing 2 protein-coding 0.065000 0.601990 Oct4_nocontrol_ChIP_peaks_unique-34 chr10 9498645 9498845 + -1.89633 NA Intergenic Intergenic 176463 NM_177271 320825 Mm.101115 NM_177271 ENSMUSG00000060487 Samd5 E130306M17Rik sterile alpha motif domain containing 5 protein-coding 0.010000 0.402985 -33(AATGCATATGTAAA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-327 chr8 23996052 23996252 + -1.89633 NA intron (NM_177086, intron 5 of 6) intron (NM_177086, intron 5 of 6) 326491 NM_177086 320158 Mm.121274 NM_177086 ENSMUSG00000037492 Zmat4 9630048M01Rik zinc finger, matrin type 4 protein-coding 0.010000 0.388060 -47(ATTTTCAAAACCATGC,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-210 chr8 92721838 92722038 + -1.89633 NA Intergenic Intergenic 47649 NM_001301137 64379 Mm.137247 NM_022428 ENSMUSG00000031738 Irx6 - Iroquois homeobox 6 protein-coding 0.010000 0.442786 ePOU_nocontrol_ChIP_peaks_unique-105 chr18 64684950 64685150 + -1.89633 NA Intergenic Intergenic -24050 NM_001001488 54670 Mm.270043 NM_001001488 ENSMUSG00000039529 Atp8b1 AI451886|FIC1|Ic ATPase, class I, type 8B, member 1 protein-coding 0.015000 0.497512 ePOU_nocontrol_ChIP_peaks_unique-62 chr13 38310180 38310380 + -1.89633 NA Intergenic Intergenic -35436 NM_007556 12161 Mm.385759 NM_007556 ENSMUSG00000039004 Bmp6 D13Wsu115e|Vgr1 bone morphogenetic protein 6 protein-coding 0.005000 0.378109 -17(ATAAACAAAACAATCC,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-180 chr6 86669090 86669290 + -1.89633 NA promoter-TSS (NM_010751) promoter-TSS (NM_010751) -31 NM_010751 17119 Mm.279580 NM_010751 ENSMUSG00000001156 Mxd1 AW122478|Mad|Mad1 MAX dimerization protein 1 protein-coding 0.145000 0.791045 Oct4_nocontrol_ChIP_peaks_unique-65 chr11 36377422 36377622 + -1.89633 NA intron (NM_011856, intron 3 of 28) (CATATA)n|Simple_repeat|Simple_repeat -396995 NM_170779 211652 Mm.31267 NM_170779 ENSMUSG00000018849 Wwc1 AA408228|AU017197|BC037006|Kibra WW, C2 and coiled-coil domain containing 1 protein-coding 0.010000 0.308458 Oct4_nocontrol_ChIP_peaks_unique-238 chr2 143077613 143077813 + -1.89633 NA promoter-TSS (NM_020595) promoter-TSS (NM_020595) -680 NM_020595 57329 Mm.157751 NM_020595 ENSMUSG00000027416 Otor CDRAP|Fdp|MIA|MIAL otoraplin protein-coding 0.005000 0.243781 -24(AATACATTATGCAAA,-,0.00) -67(TTTATATTATGTAAAT,+,0.00),-1(CATATATTATGCAAAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-54 chr12 89097313 89097513 + -1.89633 NA intron (NM_172544, intron 2 of 19) intron (NM_172544, intron 2 of 19) 144023 NM_172544 18191 Mm.425766 NM_172544 ENSMUSG00000066392 Nrxn3 - neurexin III protein-coding 0.000000 0.268657 -55(TTTAAATATGCATG,+,0.00),-55(TTTAAATATGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-40 chr10 27573966 27574166 + -1.89633 NA intron (NM_008481, intron 1 of 63) Lx6|LINE|L1 42876 NM_008481 16773 Mm.256087 NM_008481 ENSMUSG00000019899 Lama2 5830440B04|dy|mKIAA4087|mer|merosin laminin, alpha 2 protein-coding 0.005000 0.348259 -3(CTATTTTCAGTTAAAT,+,0.00),82(CTATGAATGAGAAACA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-117 chr14 34502615 34502815 + -1.89633 NA promoter-TSS (NM_009758) promoter-TSS (NM_009758) -169 NM_009758 12166 Mm.237825 NM_009758 ENSMUSG00000021796 Bmpr1a 1110037I22Rik|ALK-3|ALK3|AU045487|BMPR-1A|BMPR-IA|Bmpr|SKR5 bone morphogenetic protein receptor, type 1A protein-coding 0.165000 0.805970 Oct4_nocontrol_ChIP_peaks_unique-161 chr17 14501201 14501401 + -1.89633 NA Intergenic B3|SINE|B2 -102359 NR_027986 74917 Mm.32228 NM_183107 ENSMUSG00000117328 4930474M22Rik - RIKEN cDNA 4930474M22 gene ncRNA 0.005000 0.383085 4(AGTGCATATTCATG,+,0.00),4(AGTGCATATTCATG,-,0.00) 64(TTTTTTTTTTTTAAAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-66 chr14 18498430 18498630 + -1.89633 NA Intergenic L1MA5A|LINE|L1 -166686 NM_009455 22194 Mm.4429 NM_009455 ENSMUSG00000021774 Ube2e1 UbcM3|Ubce5|ubcM2 ubiquitin-conjugating enzyme E2E 1 protein-coding 0.000000 0.313433 38(TCTCTCACATGCAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-33 chr10 8992962 8993162 + -1.89633 NA Intergenic B3|SINE|B2 -106992 NM_175155 70097 Mm.338275 NM_175155 ENSMUSG00000015305 Sash1 1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790 SAM and SH3 domain containing 1 protein-coding 0.015000 0.373134 -15(TATACATATGAATA,-,0.00),-9(TATGAATATGTATA,+,0.00),-9(TATGAATATGTATA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-102 chr18 35498984 35499184 + -1.89633 NA promoter-TSS (NM_030749) promoter-TSS (NM_030749) -159 NM_030749 81500 Mm.291482 NM_030749 ENSMUSG00000024357 Sil1 1810057E01Rik|AI042831|wz endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae) protein-coding 0.040000 0.482587 ePOU_nocontrol_ChIP_peaks_unique-135 chr3 61363585 61363785 + -1.89633 NA promoter-TSS (NM_028712) promoter-TSS (NM_028712) -822 NM_028712 74012 Mm.422674 NM_028712 ENSMUSG00000036894 Rap2b 4021402C18Rik|AA408554 RAP2B, member of RAS oncogene family protein-coding 0.030000 0.537313 Oct4_nocontrol_ChIP_peaks_unique-346 chr9 8004441 8004641 + -1.89633 NA promoter-TSS (NM_009534) promoter-TSS (NM_009534) 55 NM_009534 22601 Mm.221992 NM_009534 ENSMUSG00000053110 Yap1 AI325207|Yap|Yap65|Yki|Yorkie yes-associated protein 1 protein-coding 0.125000 0.701493 ePOU_nocontrol_ChIP_peaks_unique-25 chr10 96617177 96617377 + -1.89633 NA 5' UTR (NM_007569, exon 1 of 2) 5' UTR (NM_007569, exon 1 of 2) 276 NM_007569 12226 Mm.23811 NM_007569 ENSMUSG00000036478 Btg1 AI426953|AW546738 B cell translocation gene 1, anti-proliferative protein-coding 0.140000 0.741294 merged_common-8 chr1 133856080 133856280 + -1.89633 NA Intergenic Intergenic 50993 NM_001160422 269120 Mm.59985 NM_054076 ENSMUSG00000010311 Optc - opticin protein-coding 0.015000 0.422886 ePOU_nocontrol_ChIP_peaks_unique-186 chr7 12922055 12922255 + -1.89633 NA promoter-TSS (NM_009095) promoter-TSS (NM_009095) -156 NM_009095 20103 Mm.5291 NM_009095 ENSMUSG00000012848 Rps5 AA617411 ribosomal protein S5 protein-coding 0.085000 0.562189 merged_common-137 chr5 150744920 150745120 + -1.89633 NA intron (NM_175310, intron 10 of 34) intron (NM_175310, intron 10 of 34) 71193 NM_175310 100710 Mm.32959 NM_175310 ENSMUSG00000034021 Pds5b AI646570|AS3|AW212954|Aprin|Tg(Wap-ERBB2)229Wzw|WAP-Her-2|mKIAA0979 PDS5 cohesin associated factor B protein-coding 0.000000 0.348259 -64(TCTTTATTATGTATAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-35 chr11 35769517 35769717 + -1.89633 NA 5' UTR (NM_145962, exon 1 of 7) 5' UTR (NM_145962, exon 1 of 7) 122 NM_145962 211347 Mm.255044 NM_145962 ENSMUSG00000018846 Pank3 - pantothenate kinase 3 protein-coding 0.140000 0.756219 Oct4_nocontrol_ChIP_peaks_unique-156 chr16 93682725 93682925 + -1.89633 NA promoter-TSS (NM_173047) promoter-TSS (NM_173047) -394 NM_173047 109857 Mm.4512 NM_173047 ENSMUSG00000022947 Cbr3 1110001J05Rik|C81353 carbonyl reductase 3 protein-coding 0.065000 0.577114 Oct4_nocontrol_ChIP_peaks_unique-151 chr16 55838931 55839131 + -1.89633 NA promoter-TSS (NM_001159395) promoter-TSS (NM_001159395) -390 NM_001159395 80859 Mm.247272 NM_030612 ENSMUSG00000035356 Nfkbiz AA408868|INAP|Mail nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta protein-coding 0.045000 0.572139 Oct4_nocontrol_ChIP_peaks_unique-133 chr15 36609026 36609226 + -1.89633 NA promoter-TSS (NM_008774) promoter-TSS (NM_008774) -153 NM_008774 18458 Mm.371570 NM_008774 ENSMUSG00000022283 Pabpc1 PABP|Pabp1|PabpI|Pabpl1|ePAB poly(A) binding protein, cytoplasmic 1 protein-coding 0.135000 0.761194 ePOU_nocontrol_ChIP_peaks_unique-176 chr6 52204385 52204585 + -1.89633 NA TTS (NM_010454) TTS (NM_010454) 102 NM_010453 15402 Mm.173 NM_010453 ENSMUSG00000038253 Hoxa5 Hox-1.3 homeobox A5 protein-coding 0.050000 0.487562 Oct4_nocontrol_ChIP_peaks_unique-89 chr12 67043635 67043835 + -1.89633 NA intron (NM_001193266, intron 1 of 16) intron (NM_001193266, intron 1 of 16) 178814 NM_207010 320772 Mm.227680 NM_207010 ENSMUSG00000034912 Mdga2 6720489L24Rik|9330209L04Rik|Adp|Mamdc1|Tg(Prnp-PFN1*G118V)838Kiaei MAM domain containing glycosylphosphatidylinositol anchor 2 protein-coding 0.005000 0.467662 Oct4_nocontrol_ChIP_peaks_unique-98 chr13 5428775 5428975 + -1.89633 NA Intergenic Intergenic 429217 NR_045891 71867 Mm.179181 NR_045891 ENSMUSG00000100625 1700016G22Rik - RIKEN cDNA 1700016G22 gene ncRNA 0.005000 0.393035 ePOU_nocontrol_ChIP_peaks_unique-41 chr11 73177271 73177471 + -1.89633 NA promoter-TSS (NM_001168470) promoter-TSS (NM_001168470) 288 NM_029564 76281 Mm.371656 NM_029564 ENSMUSG00000040158 Tax1bp3 1300011C24Rik|TIP-1 Tax1 (human T cell leukemia virus type I) binding protein 3 protein-coding 0.080000 0.601990 Oct4_nocontrol_ChIP_peaks_unique-170 chr17 85113788 85113988 + -1.89633 NA intron (NM_028576, intron 3 of 10) intron (NM_028576, intron 3 of 10) 23262 NM_028576 73582 Mm.260753 NM_028576 ENSMUSG00000071037 Camkmt 1700106N22Rik|AI480743|AV099781|CLNMT|CaM KMT calmodulin-lysine N-methyltransferase protein-coding 0.010000 0.328358 Oct4_nocontrol_ChIP_peaks_unique-320 chr7 84740984 84741184 + -1.89633 NA intron (NR_038175, intron 2 of 4) intron (NR_038175, intron 2 of 4) -51127 NM_001360578 65098 Mm.209349 NM_022985 ENSMUSG00000030629 Zfand6 3110005P07Rik|Awp1|Za20d3 zinc finger, AN1-type domain 6 protein-coding 0.000000 0.402985 Oct4_nocontrol_ChIP_peaks_unique-315 chr7 27818801 27819001 + -1.89633 NA exon (NM_027703, exon 4 of 4) exon (NM_027703, exon 4 of 4) 11705 NM_027703 71163 Mm.440493 NM_027703 ENSMUSG00000030604 Zfp626 4833408D11Rik|4933426I21Rik|7630402I04Rik zinc finger protein 626 protein-coding 0.010000 0.447761 ePOU_nocontrol_ChIP_peaks_unique-117 chr2 77268672 77268872 + -1.89633 NA intron (NM_175465, intron 1 of 17) intron (NM_175465, intron 1 of 17) 11820 NM_175465 228071 Mm.27120 NM_175465 ENSMUSG00000042272 Sestd1 1500031J16Rik|A930010O20|Solo/Trio8 SEC14 and spectrin domains 1 protein-coding 0.010000 0.452736 Oct4_nocontrol_ChIP_peaks_unique-164 chr17 42354668 42354868 + -1.89633 NA intron (NM_001355270, intron 1 of 2) intron (NM_001355270, intron 1 of 2) 38168 NM_001355270 627626 Mm.390999 NM_028474 ENSMUSG00000042256 Ptchd4 3110082D06Rik|Gm321 patched domain containing 4 protein-coding 0.000000 0.278607 49(TTTGAATATTCATT,+,0.00),49(TTTGAATATTCATT,-,0.00) -27(TCATTGCCATGAAAAA,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-150 chr4 34849055 34849255 + -1.89633 NA intron (NM_013889, intron 1 of 7) intron (NM_013889, intron 1 of 7) 33793 NM_013889 30046 Mm.38193 NM_013889 ENSMUSG00000039967 Zfp292 5730450D02Rik|5830493J20Rik|9430062L07Rik|AI449016|Krox-10|Zfp-15|Zfp15|Zn-15|Zn-16|mKIAA0530 zinc finger protein 292 protein-coding 0.000000 0.308458 -36(TTTTGCATAAAAATTT,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-15 chr1 62009469 62009669 + -1.89633 NA intron (NM_001081050, intron 2 of 22) intron (NM_001081050, intron 2 of 22) 126540 NR_151537 105243940 NR_151537 Pard3bos2 Gm12747 par-3 family cell polarity regulator beta, opposite strand 2 ncRNA 0.005000 0.328358 ePOU_nocontrol_ChIP_peaks_unique-140 chr3 107696455 107696655 + -1.89633 NA promoter-TSS (NM_001357113) promoter-TSS (NM_001357113) 5 NM_001357111 229709 Mm.220328 NM_145542 ENSMUSG00000027893 Ahcyl1 1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit S-adenosylhomocysteine hydrolase-like 1 protein-coding 0.105000 0.676617 Oct4_nocontrol_ChIP_peaks_unique-359 chr9 84355795 84355995 + -1.89633 NA Intergenic Intergenic 407114 NM_199195 12040 Mm.12819 NM_199195 ENSMUSG00000032263 Bckdhb BCKDE1B|BCKDH E1-beta branched chain ketoacid dehydrogenase E1, beta polypeptide protein-coding 0.010000 0.368159 -100(TATAAATATACATA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-75 chr15 13094552 13094752 + -1.89633 NA intron (NM_007666, intron 1 of 11) intron (NM_007666, intron 1 of 11) 79023 NM_007666 12563 Mm.57048 NM_007666 ENSMUSG00000039385 Cdh6 cad6 cadherin 6 protein-coding 0.005000 0.328358 merged_common-5 chr1 93478626 93478826 + -1.89633 NA promoter-TSS (NM_001159719) promoter-TSS (NM_001159719) 191 NM_133808 110611 Mm.30012 NM_133808 ENSMUSG00000034088 Hdlbp 1110005P14Rik|AA960365|AI118566|D1Ertd101e high density lipoprotein (HDL) binding protein protein-coding 0.035000 0.477612 ePOU_nocontrol_ChIP_peaks_unique-29 chr10 120463077 120463277 + -1.89633 NA intron (NM_010441, intron 2 of 4) intron (NM_010441, intron 2 of 4) 13292 NM_010441 15364 Mm.157190 NM_010441 ENSMUSG00000056758 Hmga2 9430083A20Rik|HMGI-C|Hmgic|pg|pygmy high mobility group AT-hook 2 protein-coding 0.010000 0.328358 10(GCATTATTATGGAAAA,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-213 chr2 71211878 71212078 + -1.89633 NA promoter-TSS (NM_001198878) promoter-TSS (NM_001198878) 32 NM_001198878 13427 Mm.249479 NM_010064 ENSMUSG00000027012 Dync1i2 3110079H08Rik|AW554389|Dncic2 dynein cytoplasmic 1 intermediate chain 2 protein-coding 0.115000 0.651741 Oct4_nocontrol_ChIP_peaks_unique-147 chr16 30587720 30587920 + -1.89633 NA promoter-TSS (NM_178069) promoter-TSS (NM_178069) -231 NM_178069 224092 Mm.567 NM_178069 ENSMUSG00000022538 Lsg1 5830465I20|AA409273|D16Bwg1547e large 60S subunit nuclear export GTPase 1 protein-coding 0.050000 0.437811 Oct4_nocontrol_ChIP_peaks_unique-321 chr7 97679739 97679939 + -1.89633 NA intron (NM_001081267, intron 13 of 15) intron (NM_001081267, intron 13 of 15) 16628 NR_154552 102641859 Mm.211743 NR_154551 Rsf1os2 Gm15623 remodeling and spacing factor 1, opposite strand 2 ncRNA 0.000000 0.303483 44(CTTTTGTCATGCATAT,+,0.00),68(ACTTTGTCCTGAAAAT,+,0.00) merged_common-21 chr11 60275143 60275343 + -1.89633 NA intron (NM_001359810, intron 2 of 12) intron (NM_001359810, intron 2 of 12) -52662 NM_001358315 20787 Mm.278701 NM_011480 ENSMUSG00000020538 Srebf1 ADD1|SREBP1|bHLHd1 sterol regulatory element binding transcription factor 1 protein-coding 0.000000 0.283582 -5(ATATGCATAAGAATAA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-35 chr10 10627395 10627595 + -1.89633 NA Intergenic Intergenic 21550 NR_033630 382450 Mm.422788 NR_033630 ENSMUSG00000098065 Gm5177 EG382450 glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 0.000000 0.333333 ePOU_nocontrol_ChIP_peaks_unique-11 chr1 79640339 79640539 + -1.89633 NA intron (NM_183027, intron 1 of 4) intron (NM_183027, intron 1 of 4) 31533 NM_183027 252903 Mm.32409 NM_183027 ENSMUSG00000054702 Ap1s3 1190009B22|Jr2|[s]3A adaptor-related protein complex AP-1, sigma 3 protein-coding 0.005000 0.472637 Oct4_nocontrol_ChIP_peaks_unique-28 chr1 180302756 180302956 + -1.89633 NA Intergenic Intergenic -27620 NM_001081175 320404 Mm.132535 NM_001081175 ENSMUSG00000038855 Itpkb 1110033J02Rik|E130307H12Rik inositol 1,4,5-trisphosphate 3-kinase B protein-coding 0.020000 0.537313 Oct4_nocontrol_ChIP_peaks_unique-277 chr4 148140215 148140415 + -1.89633 NA promoter-TSS (NM_027985) promoter-TSS (NM_027985) -175 NM_027985 71890 Mm.9648 NM_027985 ENSMUSG00000029003 Mad2l2 2310033C13Rik|G1-453-4|MAD2B|REV7|repro22 MAD2 mitotic arrest deficient-like 2 protein-coding 0.045000 0.547264 ePOU_nocontrol_ChIP_peaks_unique-50 chr12 71136866 71137066 + -1.89633 NA promoter-TSS (NM_013896) promoter-TSS (NM_013896) 118 NM_001163378 76967 Mm.87290 NM_029818 ENSMUSG00000034601 2700049A03Rik Ta3|Talpid3|mKIAA0586 RIKEN cDNA 2700049A03 gene protein-coding 0.020000 0.368159 68(CTTTAAAAAAAAAAAG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-59 chr13 3982671 3982871 + -1.89633 NA Intergenic Intergenic -37422 NM_031250 83428 Mm.313662 NM_031250 ENSMUSG00000044988 Ucn3 ucn III urocortin 3 protein-coding 0.010000 0.402985 Oct4_nocontrol_ChIP_peaks_unique-256 chr3 117310893 117311093 + -1.89633 NA Intergenic Intergenic 49883 NM_177664 229791 Mm.140138 NM_177664 ENSMUSG00000044667 Plppr4 A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455 phospholipid phosphatase related 4 protein-coding 0.000000 0.437811 -44(ATTTCCATGACAATGA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-333 chr8 75965226 75965426 + -1.89633 NA intron (NM_027944, intron 12 of 12) (TTTA)n|Simple_repeat|Simple_repeat 516632 NM_001164235 71831 Mm.443238 NM_027944 ENSMUSG00000031620 Iqcm 1700007B14Rik IQ motif containing M protein-coding 0.000000 0.194030 Oct4_nocontrol_ChIP_peaks_unique-148 chr16 32868140 32868340 + -1.89633 NA 5' UTR (NM_001200038, exon 1 of 20) 5' UTR (NM_001200038, exon 1 of 20) 126 NM_001200038 100502698 Mm.327319 NM_172615 ENSMUSG00000035629 Rubcn 1700021K19Rik|5330403K09|Rubicon|mKIAA0226 RUN domain and cysteine-rich domain containing, Beclin 1-interacting protein protein-coding 0.065000 0.651741 ePOU_nocontrol_ChIP_peaks_unique-14 chr1 133610137 133610337 + -1.89633 NA promoter-TSS (NM_009227) promoter-TSS (NM_009227) 43 NM_009227 20643 Mm.249110 NM_009227 ENSMUSG00000090553 Snrpe AL022645|C76690|SME small nuclear ribonucleoprotein E protein-coding 0.105000 0.636816 ePOU_nocontrol_ChIP_peaks_unique-146 chr3 134239070 134239270 + -1.89633 NA intron (NM_001004367, intron 2 of 3) intron (NM_001004367, intron 2 of 3) 1413 NR_035435 100316832 NR_035435 ENSMUSG00000084564 Mir1895 Mirn1895|mmu-mir-1895 microRNA 1895 ncRNA 0.025000 0.552239 ePOU_nocontrol_ChIP_peaks_unique-71 chr14 70153669 70153869 + -1.89633 NA promoter-TSS (NM_146055) promoter-TSS (NM_146055) 22 NM_146055 219158 Mm.218284 NM_146055 ENSMUSG00000033712 Ccar2 2610301G19Rik|Dbc1|mKIAA1967 cell cycle activator and apoptosis regulator 2 protein-coding 0.070000 0.626866 ePOU_nocontrol_ChIP_peaks_unique-226 chr9 109931501 109931701 + -1.89633 NA promoter-TSS (NM_008633) promoter-TSS (NM_008633) -173 NM_001205331 17758 Mm.217318 NM_008633 ENSMUSG00000032479 Map4 AA407148|MAP-4|Mtap-4|Mtap4 microtubule-associated protein 4 protein-coding 0.120000 0.686567 ePOU_nocontrol_ChIP_peaks_unique-223 chr9 65294264 65294464 + -1.89633 NA 5' UTR (NM_011802, exon 1 of 14) 5' UTR (NM_011802, exon 1 of 14) 104 NM_001044389 270166 Mm.30088 NM_011802 ENSMUSG00000015357 Clpx AU014732|E330029I21 caseinolytic mitochondrial matrix peptidase chaperone subunit protein-coding 0.095000 0.671642 Oct4_nocontrol_ChIP_peaks_unique-217 chr2 91430257 91430457 + -1.89633 NA intron (NM_175123, intron 1 of 8) intron (NM_175123, intron 1 of 8) 14357 NM_175123 228356 Mm.386861 NM_175123 ENSMUSG00000040591 1110051M20Rik AI586322 RIKEN cDNA 1110051M20 gene protein-coding 0.005000 0.417910 ePOU_nocontrol_ChIP_peaks_unique-207 chr8 69395269 69395469 + -1.89633 NA non-coding (NR_038044, exon 1 of 1) non-coding (NR_038044, exon 1 of 1) 175 NR_038044 378466 Mm.37846 NM_194351 ENSMUSG00000110444 Gm10033 9330175B10Rik|Gm10311 predicted gene 10033 ncRNA 0.060000 0.616915 Oct4_nocontrol_ChIP_peaks_unique-99 chr13 6626494 6626694 + -1.89633 NA intron (NM_019703, intron 2 of 21) intron (NM_019703, intron 2 of 21) 22177 NM_001291071 56421 Mm.273874 NM_019703 ENSMUSG00000021196 Pfkp 1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P phosphofructokinase, platelet protein-coding 0.010000 0.368159 -2(TCATTATCATGCAGAA,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-73 chr14 103367295 103367495 + -1.89633 NA Intergenic Intergenic -20595 NM_207215 105689 Mm.6478 NM_207215 ENSMUSG00000033004 Mycbp2 AU023734|AW107953|AW546647|C130061D10Rik|Pam|Phr1|R75243 MYC binding protein 2, E3 ubiquitin protein ligase protein-coding 0.015000 0.323383 Oct4_nocontrol_ChIP_peaks_unique-30 chr1 191906694 191906894 + -1.89633 NA promoter-TSS (NM_009579) promoter-TSS (NM_009579) 13 NM_009579 22782 Mm.9024 NM_009579 ENSMUSG00000037434 Slc30a1 AI839647|C130040I11Rik|Znt1 solute carrier family 30 (zinc transporter), member 1 protein-coding 0.145000 0.691542 Oct4_nocontrol_ChIP_peaks_unique-338 chr8 96111103 96111303 + -1.89633 NA Intergenic Intergenic -222802 NM_010325 14719 Mm.230169 NM_010325 ENSMUSG00000031672 Got2 AL022787|FABP-pm|Got-2|Kyat4|mAspAT glutamatic-oxaloacetic transaminase 2, mitochondrial protein-coding 0.000000 0.358209 Oct4_nocontrol_ChIP_peaks_unique-210 chr2 68298030 68298230 + -1.89633 NA intron (NM_016866, intron 14 of 17) RLTR25A|LTR|ERVK 173851 NM_016866 53416 Mm.198414 NM_016866 ENSMUSG00000027030 Stk39 AW227544|AW556857|DCHT|RF005|Rnl5|SPAK serine/threonine kinase 39 protein-coding 0.010000 0.437811 Oct4_nocontrol_ChIP_peaks_unique-177 chr18 54719527 54719727 + -1.89633 NA Intergenic Intergenic 107883 NR_045400 328957 Mm.402781 NR_045400 ENSMUSG00000118154 9330117O12Rik 9330117O12 RIKEN cDNA 9330117O12 gene ncRNA 0.000000 0.373134 82(CATGAATATGCAAA,+,0.00),82(CATGAATATGCAAA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-344 chr8 122567890 122568090 + -1.89633 NA promoter-TSS (NM_026014) promoter-TSS (NM_026014) -25 NM_026014 67177 Mm.21873 NM_026014 ENSMUSG00000006585 Cdt1 2610318F11Rik|AW545653|C76791|DUP|Ris2 chromatin licensing and DNA replication factor 1 protein-coding 0.115000 0.641791 ePOU_nocontrol_ChIP_peaks_unique-177 chr6 71493800 71494000 + -1.89633 NA promoter-TSS (NM_001308303) promoter-TSS (NM_001308303) 23 NM_009543 22644 Mm.422969 NM_009543 ENSMUSG00000052656 Rnf103 AW146237|AW212918|Zfp103|kf-1 ring finger protein 103 protein-coding 0.130000 0.746269 Oct4_nocontrol_ChIP_peaks_unique-58 chr10 117171660 117171860 + -1.89633 NA Intergenic Intergenic -23286 NM_177798 327826 Mm.135965 NM_177798 ENSMUSG00000020170 Frs2 4732458E18|C330018A15Rik|Frs2alpha|SNT1 fibroblast growth factor receptor substrate 2 protein-coding 0.005000 0.407960 -82(CTTTTATGTTGAAAAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-191 chr7 90007138 90007338 + -1.89633 NA Intergenic Intergenic -21921 NR_110364 319711 Mm.31753 NR_015614 ENSMUSG00000097585 E230029C05Rik AI452102|B230337J15|Gm26529|Gm32094 RIKEN cDNA E230029C05 gene ncRNA 0.010000 0.462687 ePOU_nocontrol_ChIP_peaks_unique-69 chr14 47472611 47472811 + -1.89633 NA exon (NM_030236, exon 1 of 2) exon (NM_030236, exon 1 of 2) 150 NM_030236 78938 Mm.11935 NM_030236 ENSMUSG00000037536 Fbxo34 2900057B08Rik|5830426G16Rik F-box protein 34 protein-coding 0.125000 0.796020 Oct4_nocontrol_ChIP_peaks_unique-275 chr4 141957944 141958144 + -1.89633 NA intron (NM_177868, intron 9 of 31) intron (NM_177868, intron 9 of 31) -24948 NR_040672 545691 Mm.332015 NR_040672 ENSMUSG00000085424 Fhad1os1 Gm13037 forkhead-associated (FHA) phosphopeptide binding domain 1, opposite strand 1 ncRNA 0.025000 0.477612 ePOU_nocontrol_ChIP_peaks_unique-122 chr2 121449053 121449253 + -1.89633 NA promoter-TSS (NM_001290837) promoter-TSS (NM_001290837) -45 NM_011354 378702 Mm.262252 NM_011354 ENSMUSG00000074884 Serf2 C80083|Msmac1l|m4F5rel small EDRK-rich factor 2 protein-coding 0.105000 0.711443 ePOU_nocontrol_ChIP_peaks_unique-217 chr9 16518809 16519009 + -1.89633 NA Intergenic Intergenic -16855 NM_001080814 270120 Mm.195010 NM_001080814 ENSMUSG00000074505 Fat3 9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F FAT atypical cadherin 3 protein-coding 0.015000 0.467662 merged_common-38 chr13 84275285 84275485 + -1.89633 NA intron (NM_001361911, intron 5 of 11) intron (NM_001361911, intron 5 of 11) 53089 NR_155262 72745 Mm.295063 NM_175187 ENSMUSG00000035762 Tmem161b 2810446P07Rik|AI843389 transmembrane protein 161B protein-coding 0.010000 0.368159 -19(TATGCTTATGCAAG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-247 chr3 41454356 41454556 + -1.89633 NA Intergenic B4A|SINE|B4 38743 NR_040385 78706 Mm.366094 NR_040385 ENSMUSG00000097639 Platr4 C430002E04Rik pluripotency associated transcript 4 ncRNA 0.000000 0.482587 21(CATGCATATGCACA,+,0.00),21(CATGCATATGCACA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-218 chr2 91649741 91649941 + -1.89633 NA promoter-TSS (NM_001145902) promoter-TSS (NM_001145902) -50 NM_001347175 381410 Mm.330401 NM_001033451 ENSMUSG00000075040 Zfp408 Gm1011 zinc finger protein 408 protein-coding 0.050000 0.502488 merged_common-159 chr9 71241562 71241762 + -1.89633 NA intron (NM_009022, intron 1 of 13) intron (NM_009022, intron 1 of 13) 25873 NM_009022 19378 Mm.42016 NM_009022 ENSMUSG00000013584 Aldh1a2 AV116159|Aldh1a7|Raldh1|Raldh2 aldehyde dehydrogenase family 1, subfamily A2 protein-coding 0.010000 0.378109 -67(TACTTTTTATTTAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-154 chr16 74480188 74480388 + -1.89633 NA intron (NM_001358491, intron 1 of 27) intron (NM_001358491, intron 1 of 27) -68463 NM_001358494 268902 Mm.171736 NM_175549 ENSMUSG00000052516 Robo2 2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568 roundabout guidance receptor 2 protein-coding 0.025000 0.393035 Oct4_nocontrol_ChIP_peaks_unique-276 chr4 146056082 146056282 + -1.89633 NA Intergenic Intergenic -11342 NR_030771 627585 Mm.424988 NM_001039233 Gm13034 - SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 5 pseudogene pseudo 0.005000 0.388060 Oct4_nocontrol_ChIP_peaks_unique-298 chr6 22355982 22356182 + -1.89633 NA promoter-TSS (NM_138587) promoter-TSS (NM_138587) -1 NM_138587 27999 Mm.490307 NM_138587 ENSMUSG00000029672 Fam3c D6Wsu176e|Ilei family with sequence similarity 3, member C protein-coding 0.175000 0.791045 ePOU_nocontrol_ChIP_peaks_unique-221 chr9 53536702 53536902 + -1.89633 NA promoter-TSS (NM_001081152) promoter-TSS (NM_001081152) -131 NM_007499 11920 Mm.5088 NM_007499 ENSMUSG00000034218 Atm AI256621|C030026E19Rik ataxia telangiectasia mutated protein-coding 0.115000 0.666667 merged_common-99 chr2 124640615 124640815 + -1.90103 NA intron (NM_172537, intron 1 of 16) intron (NM_172537, intron 1 of 16) -12866 NM_199241 214968 Mm.330536 NM_172537 ENSMUSG00000027200 Sema6d 1110067B02Rik|AA409156|D330011G23|mKIAA1479 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D protein-coding 0.010000 0.482587 merged_common-61 chr16 37454005 37454205 + -1.95709 NA Intergenic Intergenic -69147 NM_001114612 207227 Mm.80170 NM_172440 ENSMUSG00000022829 Stxbp5l 9430094L02|A830015P08Rik|LLGL4|T2dm1|t2md1|tomosyn-2 syntaxin binding protein 5-like protein-coding 0.010000 0.402985 14(ATTGCATATTCATA,+,0.00),14(ATTGCATATTCATA,-,0.00) merged_common-58 chr15 84997510 84997710 + -1.95860 NA Intergenic RLTR17B_Mm|LTR|ERVK -9639 NM_001033273 223739 Mm.323925 NM_001033273 ENSMUSG00000036046 5031439G07Rik AW554572|mKIAA0930 RIKEN cDNA 5031439G07 gene protein-coding 0.010000 0.383085 merged_common-120 chr4 58917336 58917536 + -1.97463 NA Intergenic Intergenic -4687 NM_172381 230249 Mm.234801 NM_172381 ENSMUSG00000050812 Ecpas AI314180|AW558785|BB181316|mKIAA0368 Ecm29 proteasome adaptor and scaffold protein-coding 0.005000 0.393035 -27(TATGCATATGCAAA,+,0.00),-27(TATGCATATGCAAA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-94 chr12 86771042 86771242 + -2.03024 NA Intergenic MER21B|LTR|ERVL 36773 NM_001195767 627607 Mm.341880 NM_001195767 ENSMUSG00000059114 Lrrc74a EG627607|Gm6772|Lrrc74 leucine rich repeat containing 74A protein-coding 0.010000 0.507463 -52(CCTTTGTTATGCTAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-72 chr11 80032992 80033192 + -2.03024 NA 3' UTR (NM_001163018, exon 15 of 15) 3' UTR (NM_001163018, exon 15 of 15) 39986 NM_001163018 52615 Mm.283410 NM_199196 ENSMUSG00000017548 Suz12 2610028O16Rik|AI195385|AU016842|AW536442|D11Ertd530e|mKIAA0160 SUZ12 polycomb repressive complex 2 subunit protein-coding 0.010000 0.417910 Oct4_nocontrol_ChIP_peaks_unique-126 chr14 99040757 99040957 + -2.03024 NA intron (NM_175245, intron 1 of 2) Lx9|LINE|L1 5279 NM_175245 76789 Mm.38912 NM_175245 ENSMUSG00000033186 Mzt1 2410129H14Rik|AI120158|Mozart1 mitotic spindle organizing protein 1 protein-coding 0.015000 0.353234 -43(TGTACATATGCATG,-,0.00) -95(GCATACTTATGTATAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-151 chr4 34902989 34903189 + -2.03024 NA intron (NM_009889, intron 1 of 3) RLTR25B|LTR|ERVK 8392 NR_040652 73696 Mm.1361 NR_040652 ENSMUSG00000085824 Platr9 2410114N07Rik pluripotency associated transcript 9 ncRNA 0.000000 0.388060 -25(ATTTACATAACAATCT,-,0.00) merged_common-92 chr2 84053625 84053825 + -2.03024 NA Intergenic Intergenic -112499 NM_027964 71861 Mm.116957 NM_027964 ENSMUSG00000034552 Zswim2 1700025P14Rik|4933437F18Rik|MEX zinc finger SWIM-type containing 2 protein-coding 0.005000 0.308458 -34(TATCCTTTATGCATT,-,0.00) -15(TAATTTTCTTTGAAAT,+,0.00),-9(TCTTTGAAATGGAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-149 chr16 37010410 37010610 + -2.03024 NA Intergenic Intergenic -1276 NM_001159369 77782 Mm.259114 NM_029977 ENSMUSG00000034206 Polq A430110D14Rik polymerase (DNA directed), theta protein-coding 0.010000 0.422886 merged_common-33 chr13 26190869 26191069 + -2.03024 NA Intergenic Intergenic 121437 NR_045933 73576 Mm.45473 NR_045933 ENSMUSG00000084811 1700092E19Rik - RIKEN cDNA 1700092E19 gene ncRNA 0.000000 0.273632 -40(TTTGCATATTCATG,+,0.00),-40(TTTGCATATTCATG,-,0.00) merged_common-66 chr17 35081178 35081378 + -2.03024 NA promoter-TSS (NM_001371027) promoter-TSS (NM_001371027) -39 NM_001371027 0.025000 0.512438 ePOU_nocontrol_ChIP_peaks_unique-116 chr2 51007861 51008061 + -2.03024 NA Intergenic MLTR25A|LTR|ERVK 98277 NR_033595 227885 Mm.301654 NR_033595 ENSMUSG00000083270 Gm13498 - heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 0.015000 0.442786 Oct4_nocontrol_ChIP_peaks_unique-87 chr12 56699274 56699474 + -2.03024 NA intron (NM_011041, intron 2 of 3) intron (NM_011041, intron 2 of 3) 3903 NM_011041 18511 Mm.5035 NM_011041 ENSMUSG00000001497 Pax9 Pax-9 paired box 9 protein-coding 0.010000 0.338308 -62(TATGCATATATATA,-,0.00),-52(TATAAATATGCATA,+,0.00),-52(TATAAATATGCATA,-,0.00),42(TTTGCATATGTATT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-134 chr15 38460730 38460930 + -2.03024 NA Intergenic Intergenic 29717 NR_105916 102465574 NR_105916 ENSMUSG00000099110 Mir6951 Gm27765|mmu-mir-6951 microRNA 6951 ncRNA 0.010000 0.358209 -52(ATTTCCATTACAATAA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-152 chr16 57473537 57473737 + -2.03024 NA intron (NM_001040397, intron 1 of 4) intron (NM_001040397, intron 1 of 4) -75605 NM_001177871 78749 Mm.328360 NM_001040397 ENSMUSG00000043336 Filip1l 4631422O05Rik|Doc1 filamin A interacting protein 1-like protein-coding 0.000000 0.393035 50(GTGTGCATCACAAAGA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-139 chr15 59374090 59374290 + -2.03024 NA promoter-TSS (NM_026746) promoter-TSS (NM_026746) -3 NM_153548 223593 Mm.218665 NM_153548 ENSMUSG00000022350 Washc5 AL022848|C76463|E430025E21Rik|strumpellin WASH complex subunit 5 protein-coding 0.105000 0.701493 merged_common-149 chr8 33602140 33602340 + -2.04507 NA intron (NM_017374, intron 1 of 6) B3|SINE|B2 2619 NM_017374 19053 Mm.29301 NM_017374 ENSMUSG00000009630 Ppp2cb AI115466|D8Ertd766e|PP2Ac protein phosphatase 2 (formerly 2A), catalytic subunit, beta isoform protein-coding 0.025000 0.407960 Oct4_nocontrol_ChIP_peaks_unique-173 chr18 43438859 43439059 + -2.10857 NA promoter-TSS (NM_001291455) promoter-TSS (NM_001291455) -673 NM_001291455 22240 Mm.8180 NM_009468 ENSMUSG00000024501 Dpysl3 CRMP-4|DRP-3|TUC4|ULIP-1|Ulip|Ulip1 dihydropyrimidinase-like 3 protein-coding 0.035000 0.422886 merged_common-16 chr10 115863927 115864127 + -2.10857 NA Intergenic RMER12|LTR|ERVK 46743 NM_001168680 216350 Mm.22270 NM_146010 ENSMUSG00000034127 Tspan8 C76990|E330007O21Rik|Tm4sf3 tetraspanin 8 protein-coding 0.010000 0.383085 -19(ACTACATATGCATA,+,0.00),-19(ACTACATATGCATA,-,0.00),-13(TATGCATATGCGTA,+,0.00),-13(TATGCATATGCGTA,-,0.00),3(TATGCAAATACATG,-,0.00),35(CATGCATATGCACA,+,0.00),35(CATGCATATGCACA,-,0.00) merged_common-41 chr13 109592937 109593137 + -2.12829 NA intron (NM_011056, intron 3 of 16) intron (NM_011056, intron 3 of 16) 268293 NR_030644 100124489 NR_030644 ENSMUSG00000076946 Mir582 Mirn582|mir-582|mmu-mir-582 microRNA 582 ncRNA 0.005000 0.383085 Oct4_nocontrol_ChIP_peaks_unique-51 chr10 74321787 74321987 + -2.21154 NA intron (NM_001142742, intron 13 of 35) intron (NM_001142742, intron 13 of 35) 500020 NM_001142740 11994 Mm.338933 NM_023115 ENSMUSG00000052613 Pcdh15 BB078305|Gm9815|Ush1f|av|nmf19|roda protocadherin 15 protein-coding 0.000000 0.288557 -93(CATGATTATGCATA,+,0.00),-93(CATGATTATGCATA,-,0.00) -98(ATGTACATGATTATGC,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-372 chrX 169858163 169858363 + -2.21154 NA intron (NM_001290504, intron 1 of 9) RMER12|LTR|ERVK -21356 NM_001290505 17318 Mm.34441 NM_010797 ENSMUSG00000035299 Mid1 61B3-R|DXHXS1141|Fxy|Trim18 midline 1 protein-coding 0.000000 0.308458 -28(TATGCATATGTACA,+,0.00),-28(TATGCATATGTACA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-314 chr7 19169686 19169886 + -2.21154 NA Intergenic Intergenic -3659 NM_001080815 381853 Mm.333633 NM_001080815 ENSMUSG00000030406 Gipr GIP-R|Gm1081|Gm160 gastric inhibitory polypeptide receptor protein-coding 0.035000 0.427861 83(TGTGTATAATTCATA,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-116 chr14 26485433 26485633 + -2.21154 NA intron (NM_032008, intron 1 of 22) intron (NM_032008, intron 1 of 22) 49091 NM_001310445 83997 Mm.36769 NM_032008 ENSMUSG00000021870 Slmap D330001L02Rik|Miranda|Slap|mKIAA1601 sarcolemma associated protein protein-coding 0.005000 0.437811 Oct4_nocontrol_ChIP_peaks_unique-224 chr2 109863685 109863885 + -2.21154 NA Intergenic Intergenic -27093 NM_011699 22343 Mm.235300 NM_011699 ENSMUSG00000027162 Lin7c 9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3 lin-7 homolog C (C. elegans) protein-coding 0.000000 0.318408 -60(GTATTATCATGCATTT,+,0.00) merged_common-69 chr17 49691028 49691228 + -2.21154 NA intron (NM_177052, intron 6 of 22) intron (NM_177052, intron 6 of 22) 75956 NM_177052 319991 Mm.441340 NM_177052 ENSMUSG00000023999 Kif6 D130004B10Rik|D130084M03Rik kinesin family member 6 protein-coding 0.020000 0.467662 -32(CTTTCCATGATAAAAA,-,0.00),1(CTTTAAAAGAGAGAGG,-,0.00) merged_common-73 chr18 19937777 19937977 + -2.21154 NA Intergenic Intergenic 64220 NM_001291809 13507 Mm.89935 NM_007882 ENSMUSG00000059898 Dsc3 5430426I24Rik desmocollin 3 protein-coding 0.000000 0.378109 merged_common-98 chr2 124380506 124380706 + -2.21154 NA intron (NM_001290997, intron 3 of 20) RSINE1|SINE|B4 -158248 NR_040612 75946 Mm.415059 NR_040612 ENSMUSG00000086954 4930583P06Rik - RIKEN cDNA 4930583P06 gene ncRNA 0.000000 0.388060 Oct4_nocontrol_ChIP_peaks_unique-47 chr10 59157213 59157413 + -2.21154 NA intron (NM_001024910, intron 9 of 9) Lx9|LINE|L1 64534 NM_001024911 103080 Mm.346842 NM_001024910 ENSMUSG00000019917 Sept10 4921515A04Rik|9430099J10Rik|AA408298|AI874685 septin 10 protein-coding 0.010000 0.363184 9(TATGAATATGTATG,+,0.00),9(TATGAATATGTATG,-,0.00),49(TGTACATATGCATA,+,0.00),49(TGTACATATGCATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-362 chr9 90229834 90230034 + -2.23178 NA intron (NM_194334, intron 3 of 12) RMER12|LTR|ERVK 40835 NM_194334 67016 Mm.335347 NM_194334 ENSMUSG00000037410 Tbc1d2b 1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055 TBC1 domain family, member 2B protein-coding 0.005000 0.398010 -49(TATGTATATGCATG,+,0.00),-49(TATGTATATGCATG,-,0.00),-39(CATGCATATGTATG,+,0.00),-39(CATGCATATGTATG,-,0.00),-17(CATGCATATGTATG,+,0.00),-17(CATGCATATGTATG,-,0.00),5(CATGCATATGTATG,+,0.00),5(CATGCATATGTATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-357 chr9 66679115 66679315 + -2.23982 NA Intergenic Intergenic -34471 NM_001306148 76459 Mm.277921 NM_178396 ENSMUSG00000032373 Car12 2310047E01Rik|AI314958|CA-XII|Ca12 carbonic anhydrase 12 protein-coding 0.005000 0.333333 -78(TATGCATATTCATA,+,0.00),-78(TATGCATATTCATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-27 chr1 163518273 163518473 + -2.23982 NA Intergenic Intergenic -114704 NM_178883 98376 Mm.32901 NM_178883 ENSMUSG00000040124 Gorab NTKL-BP1|SCYL1-BP1|Scyl1bp1 golgin, RAB6-interacting protein-coding 0.010000 0.398010 Oct4_nocontrol_ChIP_peaks_unique-82 chr12 32954416 32954616 + -2.23982 NA promoter-TSS (NR_044986) promoter-TSS (NR_044986) 330 NM_198710 19027 Mm.246304 NM_013635 ENSMUSG00000020570 Sypl AI314763|AI604763|D12Ertd446e|PanI|Pphn|Sypl1 synaptophysin-like protein protein-coding 0.130000 0.696517 Oct4_nocontrol_ChIP_peaks_unique-93 chr12 85280335 85280535 + -2.23982 NA promoter-TSS (NM_001364361) promoter-TSS (NM_001364361) 0 NM_001364361 66204 Mm.311985 NM_025421 ENSMUSG00000008822 Acyp1 1110039O14Rik|AI325944 acylphosphatase 1, erythrocyte (common) type protein-coding 0.070000 0.601990 Oct4_nocontrol_ChIP_peaks_unique-136 chr15 50652274 50652474 + -2.23982 NA Intergenic Intergenic 236675 NM_001310485 83925 Mm.30466 NM_032000 ENSMUSG00000038679 Trps1 AI115454|AI447310|D15Ertd586e transcriptional repressor GATA binding 1 protein-coding 0.000000 0.338308 -2(CTTTTCTATTTCATAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-8 chr1 30850537 30850737 + -2.23982 NA intron (NM_001081080, intron 1 of 14) (TATATG)n|Simple_repeat|Simple_repeat 12619 NM_001081080 213109 Mm.194486 NM_025871 ENSMUSG00000048874 Phf3 2310061N19Rik PHD finger protein 3 protein-coding 0.005000 0.278607 -40(TATGAATAATATATG,+,0.00),-40(TATGAATAATATATG,-,0.00) -17(TATGTATATGTATA,+,0.00),-11(TATGTATATGCATA,+,0.00),-11(TATGTATATGCATA,-,0.00),-5(TATGCATATGTACA,+,0.00),-5(TATGCATATGTACA,-,0.00),13(TATGTATATGTATA,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-181 chr19 6085365 6085565 + -2.23982 NA promoter-TSS (NM_024231) promoter-TSS (NM_024231) 368 NM_026410 67849 Mm.23526 NM_026410 ENSMUSG00000024791 Cdca5 2610036L13Rik|AL024086|AW536684|C85404 cell division cycle associated 5 protein-coding 0.045000 0.517413 Oct4_nocontrol_ChIP_peaks_unique-211 chr2 68888925 68889125 + -2.23982 NA intron (NM_172856, intron 1 of 9) L1MEf|LINE|L1 27584 NM_001347161 241447 Mm.222222 NM_172856 ENSMUSG00000027035 Cers6 4732462C07Rik|AW544719|Lass6|T1L ceramide synthase 6 protein-coding 0.025000 0.407960 ePOU_nocontrol_ChIP_peaks_unique-196 chr7 126200565 126200765 + -2.23982 NA promoter-TSS (NM_001311143) promoter-TSS (NM_001311143) -164 NM_001311143 74204 Mm.235663 NM_028816 ENSMUSG00000000131 Xpo6 2610005L19Rik|AL022631|C230091E20Rik|R75304|Ranbp20|exp6|mKIAA0370 exportin 6 protein-coding 0.070000 0.542289 Oct4_nocontrol_ChIP_peaks_unique-163 chr17 30253759 30253959 + -2.23982 NA intron (NM_172618, intron 9 of 11) intron (NM_172618, intron 9 of 11) 142321 NR_030688 623169 Mm.440508 NR_030688 Gm6402 EG623169 ribosomal protein S17 pseudogene pseudo 0.015000 0.427861 26(CATTCATATACATT,+,0.00) merged_common-84 chr2 9669784 9669984 + -2.23982 NA Intergenic Intergenic 208716 NM_001355111 14462 Mm.313866 NM_008091 ENSMUSG00000015619 Gata3 Gata-3|jal GATA binding protein 3 protein-coding 0.005000 0.407960 5(ATTTGAAAGTCAATGG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-343 chr8 119227693 119227893 + -2.23982 NA intron (NM_019707, intron 8 of 13) intron (NM_019707, intron 8 of 13) -116745 NM_024219 68196 Mm.358714 NM_024219 ENSMUSG00000031839 Hsbp1 0610007A03Rik|AA408769|Hsp25 heat shock factor binding protein 1 protein-coding 0.015000 0.417910 6(AATGCATATGCACA,+,0.00),6(AATGCATATGCACA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-133 chr3 21936001 21936201 + -2.23982 NA Intergenic Intergenic -140551 NM_030732 81004 Mm.202966 NM_030732 ENSMUSG00000027630 Tbl1xr1 8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1 transducin (beta)-like 1X-linked receptor 1 protein-coding 0.045000 0.537313 ePOU_nocontrol_ChIP_peaks_unique-149 chr4 33261499 33261699 + -2.23982 NA Intergenic Intergenic -12812 NM_001033225 108767 Mm.27769 NM_001033225 ENSMUSG00000040128 Pnrc1 5730463C12Rik|B4-2|PRR2|Prol2 proline-rich nuclear receptor coactivator 1 protein-coding 0.015000 0.537313 Oct4_nocontrol_ChIP_peaks_unique-169 chr17 62338014 62338214 + -2.23982 NA Intergenic Intergenic 543203 NM_207654 13640 Mm.7978 NM_010109 ENSMUSG00000048915 Efna5 AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS ephrin A5 protein-coding 0.020000 0.422886 Oct4_nocontrol_ChIP_peaks_unique-284 chr5 65107942 65108142 + -2.23982 NA intron (NM_001347355, intron 1 of 10) CpG 474 NM_001347355 71778 Mm.10281 NM_175174 ENSMUSG00000054920 Klhl5 1300013C10Rik kelch-like 5 protein-coding 0.070000 0.686567 Oct4_nocontrol_ChIP_peaks_unique-351 chr9 44334760 44334960 + -2.23982 NA TTS (NM_001364464) TTS (NM_001364464) 145 NM_010436 15270 Mm.245931 NM_010436 ENSMUSG00000049932 H2afx AW228881|H2A.X|H2ax|Hist5-2ax|gammaH2ax H2A histone family, member X protein-coding 0.135000 0.701493 Oct4_nocontrol_ChIP_peaks_unique-252 chr3 103849124 103849324 + -2.23982 NA intron (NM_001142960, intron 3 of 3) RLTR22_Mus|LTR|ERVK -10571 NR_104070 19260 Mm.395 NM_008979 ENSMUSG00000027843 Ptpn22 70zpep|PEP|Ptpn8 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) protein-coding 0.000000 0.363184 Oct4_nocontrol_ChIP_peaks_unique-195 chr2 10453952 10454152 + -2.23982 NA intron (NM_177386, intron 9 of 22) (TATATG)n|Simple_repeat|Simple_repeat -12611 NR_130333 100526481 NR_130333 ENSMUSG00000092793 Mir466m mmu-mir-466m microRNA 466m ncRNA 0.015000 0.388060 -36(GTTCAATTATGCATA,+,0.00) -29(TATGCATATATATG,-,0.00),17(TGTGCATATGCATG,+,0.00),17(TGTGCATATGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique chr1 3580542 3580742 + -2.23982 NA intron (NM_001011874, intron 1 of 2) intron (NM_001011874, intron 1 of 2) 90856 NM_001011874 497097 Mm.454496 NM_001011874 ENSMUSG00000051951 Xkr4 AY534250|Gm210|XRG4|mKIAA1889 X-linked Kx blood group related 4 protein-coding 0.000000 0.333333 -4(ATTGCATATTCATT,+,0.00),-4(ATTGCATATTCATT,-,0.00) -84(AATTACAAGAAAATAC,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-342 chr8 117802309 117802509 + -2.23982 NA promoter-TSS (NM_001357233) promoter-TSS (NM_001357233) -435 NM_001357233 68533 Mm.181836 NM_026758 ENSMUSG00000031843 Mphosph6 1110001M01Rik|AA536809|C86426 M phase phosphoprotein 6 protein-coding 0.035000 0.512438 ePOU_nocontrol_ChIP_peaks_unique-80 chr15 98550180 98550380 + -2.23982 NA intron (NR_160872, intron 5 of 7) B1F1|SINE|Alu -16011 NM_001289438 69612 Mm.229107 NM_133714 ENSMUSG00000022992 Kansl2 2310037I24Rik|B930009D17 KAT8 regulatory NSL complex subunit 2 protein-coding 0.005000 0.412935 Oct4_nocontrol_ChIP_peaks_unique-155 chr16 86115912 86116112 + -2.23982 NA Intergenic Intergenic -214887 NM_011782 23794 Mm.112933 NM_011782 ENSMUSG00000022894 Adamts5 9530092O11Rik|ADAM-TS5|ADAMTS1|ADAMTS11|ADMP-2|AI481094|ASMP-2 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 5 (aggrecanase-2) protein-coding 0.000000 0.268657 -66(ATTTAAAAAAAAAAAG,-,0.00),69(CTCTACATAACAATGG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-111 chr13 91490446 91490646 + -2.23982 NA intron (NM_001360776, intron 1 of 15) RMER12C|LTR|ERVK 29449 NM_001360775 66970 Mm.343095 NM_024186 ENSMUSG00000003992 Ssbp2 1500004K09Rik|2310079I02Rik|9330163K02Rik|A830008M03Rik|AU067692|AW558684|Hspc116|SSDP2 single-stranded DNA binding protein 2 protein-coding 0.000000 0.373134 -25(CATGCATAATACATG,+,0.00),-25(CATGCATAATACATG,-,0.00) 4(CATACATATGCATA,+,0.00),4(CATACATATGCATA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-201 chr8 7286797 7286997 + -2.23982 NA Intergenic MLTR25A|LTR|ERVK 1374345 NM_001368299 13642 Mm.209813 NM_010111 ENSMUSG00000001300 Efnb2 ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1 ephrin B2 protein-coding 0.005000 0.432836 Oct4_nocontrol_ChIP_peaks_unique-143 chr15 81578473 81578673 + -2.23982 NA Intergenic (TTTA)n|Simple_repeat|Simple_repeat -7641 NM_177821 328572 Mm.258397 NM_177821 ENSMUSG00000055024 Ep300 A430090G16|A730011L11|KAT3B|p300|p300 HAT E1A binding protein p300 protein-coding 0.000000 0.248756 Oct4_nocontrol_ChIP_peaks_unique-153 chr16 70049513 70049713 + -2.23982 NA Intergenic Intergenic -185869 NM_173069 224318 Mm.212743 NM_173069 ENSMUSG00000063163 Speer2 SPEER-2 spermatogenesis associated glutamate (E)-rich protein 2 protein-coding 0.005000 0.378109 -81(ATCTGCATGACAAATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-184 chr19 12567797 12567997 + -2.23982 NA Intergenic Intergenic -5613 NM_001346545 107373 Mm.1643 NM_026640 ENSMUSG00000024691 Fam111a 4632417K18Rik|AW413625 family with sequence similarity 111, member A protein-coding 0.005000 0.338308 Oct4_nocontrol_ChIP_peaks_unique-295 chr6 12084842 12085042 + -2.23982 NA Intergenic Intergenic 24638 NR_003631 625347 Mm.389084 NM_001039041 ENSMUSG00000057223 Gm6578 EG625347 mitochondrial ribosomal protein L32 pseudogene pseudo 0.015000 0.407960 ePOU_nocontrol_ChIP_peaks_unique-114 chr2 30237766 30237966 + -2.23982 NA promoter-TSS (NR_028299) promoter-TSS (NR_028299) 97 NM_177725 241296 Mm.389232 NM_177725 ENSMUSG00000007476 Lrrc8a Lrrc8|SWELL1|ebo|mKIAA1437 leucine rich repeat containing 8A VRAC subunit A protein-coding 0.140000 0.781095 Oct4_nocontrol_ChIP_peaks_unique-324 chr7 135139499 135139699 + -2.23982 NA intron (NM_001033420, intron 42 of 51) intron (NM_001033420, intron 42 of 51) 56403 NR_046050 74314 Mm.415339 NR_046050 ENSMUSG00000100717 1700120G07Rik - RIKEN cDNA 1700120G07 gene ncRNA 0.010000 0.432836 Oct4_nocontrol_ChIP_peaks_unique-291 chr5 123298600 123298800 + -2.23982 NA intron (NM_001370840, intron 16 of 20) B3A|SINE|B2 44912 NM_001370840 269701 Mm.444012 NM_177760 ENSMUSG00000029442 Wdr66 4930415N18Rik|4933428F06Rik|5031404N07|CFAP251 WD repeat domain 66 protein-coding 0.005000 0.477612 -3(TGTACATATGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-52 chr10 79766976 79767176 + -2.23982 NA promoter-TSS (NR_027505) promoter-TSS (NR_027505) -124 NR_027505 70294 Mm.466670 NM_144528 ENSMUSG00000035890 Rnf126 2610010O19Rik ring finger protein 126 protein-coding 0.070000 0.626866 ePOU_nocontrol_ChIP_peaks_unique-78 chr15 39491880 39492080 + -2.23982 NA intron (NM_053271, intron 15 of 26) L1_Mur2|LINE|L1 -167531 NM_001256384 116838 Mm.309296 NM_053271 ENSMUSG00000037386 Rims2 2810036I15Rik|AW048769|RIM2|Rab3ip2|Rim2(+40A)|Rim2(+44A)|Rim2(+4A)|Serg2|Syt3-rs|mKIAA0751 regulating synaptic membrane exocytosis 2 protein-coding 0.000000 0.373134 Oct4_nocontrol_ChIP_peaks_unique-328 chr8 46217362 46217562 + -2.23982 NA Intergenic Intergenic -6400 NM_007450 11739 Mm.16228 NM_007450 ENSMUSG00000031633 Slc25a4 AU019225|Ant1|mANC1 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 protein-coding 0.020000 0.373134 Oct4_nocontrol_ChIP_peaks_unique-363 chr9 97068454 97068654 + -2.23982 NA Intergenic Intergenic 42487 NM_138756 192287 Mm.228067 NM_138756 ENSMUSG00000032449 Slc25a36 C330005L02Rik solute carrier family 25, member 36 protein-coding 0.015000 0.472637 ePOU_nocontrol_ChIP_peaks_unique-22 chr10 61648432 61648632 + -2.23982 NA promoter-TSS (NM_026438) promoter-TSS (NM_026438) -89 NM_026438 67895 Mm.28897 NM_026438 ENSMUSG00000020089 Ppa1 2010317E03Rik|Pyp pyrophosphatase (inorganic) 1 protein-coding 0.145000 0.766169 Oct4_nocontrol_ChIP_peaks_unique-215 chr2 79005300 79005500 + -2.23982 NA Intergenic Intergenic 135722 NM_001356395 22193 Mm.1485 NM_009454 ENSMUSG00000027011 Ube2e3 Ubce4|ubcM2 ubiquitin-conjugating enzyme E2E 3 protein-coding 0.005000 0.263682 ePOU_nocontrol_ChIP_peaks_unique-52 chr12 80415344 80415544 + -2.23982 NA intron (NM_001364324, intron 1 of 8) ORR1D1-int|LTR|ERVL-MaLR 21157 NM_177267 320808 Mm.220310 NM_177267 ENSMUSG00000049106 Dcaf5 9430020B07Rik|AI325023|AI430035|AI848110|AW124614|BCRG2|BCRP2|Wdr22 DDB1 and CUL4 associated factor 5 protein-coding 0.005000 0.417910 Oct4_nocontrol_ChIP_peaks_unique-329 chr8 47673783 47673983 + -2.23982 NA intron (NM_023503, intron 1 of 1) CpG 1276 NM_023503 69260 Mm.430733 NM_023503 ENSMUSG00000063049 Ing2 2810011M06Rik|Ing1l|Ing2b|P33ING2 inhibitor of growth family, member 2 protein-coding 0.070000 0.636816 ePOU_nocontrol_ChIP_peaks_unique-171 chr5 114667558 114667758 + -2.23982 NA Intergenic CpG -9237 NM_022017 63873 Mm.266450 NM_022017 ENSMUSG00000014158 Trpv4 0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC transient receptor potential cation channel, subfamily V, member 4 protein-coding 0.090000 0.656716 ePOU_nocontrol_ChIP_peaks_unique-61 chr13 23563160 23563360 + -2.23982 NA promoter-TSS (NM_178205) promoter-TSS (NM_178205) -895 NM_178205 319151 Mm.261658 NM_178205 ENSMUSG00000069273 Hist1h3e H3-f|H3.1 histone cluster 1, H3e protein-coding 0.020000 0.398010 merged_common-121 chr4 82896416 82896616 + -2.23982 NA Intergenic Intergenic -11365 NM_009887 12622 Mm.6780 NM_009887 ENSMUSG00000038192 Cer1 Cerl|Cerl1|Cerr1|cer-1 cerberus 1, DAN family BMP antagonist protein-coding 0.000000 0.348259 Oct4_nocontrol_ChIP_peaks_unique-19 chr1 80034402 80034602 + -2.23982 NA Intergenic Intergenic -175837 NM_009255 20720 Mm.3093 NM_009255 ENSMUSG00000026249 Serpine2 B230326M24Rik|PAI-1|PI-7|PI7|PN-1|Spi4 serine (or cysteine) peptidase inhibitor, clade E, member 2 protein-coding 0.005000 0.358209 Oct4_nocontrol_ChIP_peaks_unique-255 chr3 108516381 108516581 + -2.23982 NA intron (NM_001358064, intron 1 of 21) intron (NM_001358064, intron 1 of 21) 20060 NM_001033304 229722 Mm.316890 NM_001033304 ENSMUSG00000040412 5330417C22Rik BB183350 RIKEN cDNA 5330417C22 gene protein-coding 0.010000 0.422886 Oct4_nocontrol_ChIP_peaks_unique-109 chr13 63356564 63356764 + -2.23982 NA intron (NM_001042673, intron 6 of 15) intron (NM_001042673, intron 6 of 15) -55381 NR_037235 100526474 NR_037235 ENSMUSG00000092741 Mir3074-1 mmu-mir-3074-1 microRNA 3074-1 ncRNA 0.010000 0.432836 ePOU_nocontrol_ChIP_peaks_unique-189 chr7 80226414 80226614 + -2.23982 NA TTS (NM_001360135) TTS (NM_001360135) 6291 NM_011870 23991 Mm.30217 NM_011870 ENSMUSG00000030538 Cib1 Cibkip|Kip|Prkdcip calcium and integrin binding 1 (calmyrin) protein-coding 0.015000 0.412935 Oct4_nocontrol_ChIP_peaks_unique-110 chr13 77762550 77762750 + -2.23982 NA intron (NM_001163419, intron 3 of 9) intron (NM_001163419, intron 3 of 9) 53960 NR_028109 68675 Mm.343005 NM_138312 ENSMUSG00000064138 Fam172a 1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87 family with sequence similarity 172, member A protein-coding 0.005000 0.323383 Oct4_nocontrol_ChIP_peaks_unique-200 chr2 31572703 31572903 + -2.23982 NA 5' UTR (NM_001290548, exon 1 of 19) 5' UTR (NM_001290548, exon 1 of 19) 152 NM_001363079 320267 Mm.207261 NM_001033389 ENSMUSG00000026843 Fubp3 A330051M14Rik|AV006371|FBP3|Marta2 far upstream element (FUSE) binding protein 3 protein-coding 0.090000 0.686567 Oct4_nocontrol_ChIP_peaks_unique-326 chr7 139536939 139537139 + -2.23982 NA intron (NM_001355162, intron 8 of 15) intron (NM_001355162, intron 8 of 15) 45758 NR_027857 14912 Mm.28308 NM_183248 ENSMUSG00000041309 Nkx6-2 Gtx|Nkx6.2 NK6 homeobox 2 protein-coding 0.005000 0.472637 Oct4_nocontrol_ChIP_peaks_unique-175 chr18 43965242 43965442 + -2.23982 NA intron (NM_001081180, intron 2 of 31) intron (NM_001081180, intron 2 of 31) 2101 NM_001081180 72432 Mm.35369 NM_001081180 ENSMUSG00000055561 Spink5 2310065D10Rik|AV238912|LEKT1|LETK1|VAKT1 serine peptidase inhibitor, Kazal type 5 protein-coding 0.005000 0.303483 -58(ATTTGAAATATAATTG,-,0.00),-31(TCTTTGTCATGTACAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-16 chr1 165461020 165461220 + -2.23982 NA promoter-TSS (NM_027430) promoter-TSS (NM_027430) -140 NM_027430 70456 Mm.195625 NM_027430 ENSMUSG00000026568 Mpc2 0610006C01Rik|2010002I07Rik|2610205H19Rik|AA108335|Brp44|ESTM43 mitochondrial pyruvate carrier 2 protein-coding 0.085000 0.681592 Oct4_nocontrol_ChIP_peaks_unique-208 chr2 62423593 62423793 + -2.23982 NA Intergenic Intergenic -11462 NM_001159543 13482 Mm.1151 NM_010074 ENSMUSG00000035000 Dpp4 Cd26|Dpp-4|THAM dipeptidylpeptidase 4 protein-coding 0.015000 0.432836 Oct4_nocontrol_ChIP_peaks_unique-45 chr10 36847618 36847818 + -2.23982 NA Intergenic Intergenic -126826 NM_008229 15182 Mm.19806 NM_008229 ENSMUSG00000019777 Hdac2 D10Wsu179e|YAF1|Yy1bp|mRPD3 histone deacetylase 2 protein-coding 0.000000 0.378109 59(CATCAATATTCAAG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-313 chr6 146644309 146644509 + -2.23982 NA intron (NM_025315, intron 1 of 3) intron (NM_025315, intron 1 of 3) 1830 NM_025315 108098 Mm.26212 NM_025315 ENSMUSG00000030291 Med21 0610007L03Rik|AI449604|D19234|D6Ertd782e|Srb7|Surb7 mediator complex subunit 21 protein-coding 0.005000 0.338308 27(TATGCATATTCATG,+,0.00),27(TATGCATATTCATG,-,0.00) -47(TCTTTCTTGTTTTAAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-3 chr1 36471405 36471605 + -2.23982 NA promoter-TSS (NM_033570) promoter-TSS (NM_033570) -92 NM_033570 94220 Mm.422638 NM_033570 ENSMUSG00000037408 Cnnm4 5430430O18Rik|Acdp4 cyclin M4 protein-coding 0.140000 0.751244 Oct4_nocontrol_ChIP_peaks_unique-129 chr15 6310494 6310694 + -2.23982 NA intron (NM_001008702, intron 1 of 13) intron (NM_001008702, intron 1 of 13) 10805 NM_001008702 13132 Mm.240830 NM_023118 ENSMUSG00000022150 Dab2 5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96 disabled 2, mitogen-responsive phosphoprotein protein-coding 0.010000 0.517413 Oct4_nocontrol_ChIP_peaks_unique-300 chr6 30048149 30048349 + -2.23982 NA intron (NM_001164230, intron 1 of 11) CpG 261 NM_001164230 18181 Mm.259258 NM_010938 ENSMUSG00000058440 Nrf1 C87038|D6Ertd415e nuclear respiratory factor 1 protein-coding 0.145000 0.860697 Oct4_nocontrol_ChIP_peaks_unique-90 chr12 75733379 75733579 + -2.23982 NA intron (NM_030750, intron 1 of 2) (TC)n|Simple_repeat|Simple_repeat 2250 NM_030750 81535 Mm.280199 NM_030750 ENSMUSG00000021054 Sgpp1 AI463453|SPP|SPP1|Spph1 sphingosine-1-phosphate phosphatase 1 protein-coding 0.010000 0.462687 Oct4_nocontrol_ChIP_peaks_unique-179 chr18 71354797 71354997 + -2.23982 NA intron (NM_007831, intron 21 of 28) intron (NM_007831, intron 21 of 28) 786605 NM_010773 17191 Mm.322 NM_010773 ENSMUSG00000024513 Mbd2 MBD2a methyl-CpG binding domain protein 2 protein-coding 0.005000 0.378109 16(GATGCATAATGCAGG,+,0.00),16(GATGCATAATGCAGG,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-44 chr11 84180283 84180483 + -2.23982 NA Intergenic CpG -12907 NM_001037932 628813 Mm.390389 NM_001037932 ENSMUSG00000051452 Gm11437 AI463690 predicted gene 11437 protein-coding 0.065000 0.611940 merged_common-32 chr12 105685143 105685343 + -2.23982 NA promoter-TSS (NM_029654) promoter-TSS (NM_029654) -2 NM_029654 76559 Mm.114362 NM_029654 ENSMUSG00000041341 Atg2b 2410024A21Rik|AI047755|AI503411|AW558123|C030004M05Rik|C630028L02Rik|mKIAA4067 autophagy related 2B protein-coding 0.120000 0.636816 merged_common-59 chr15 85859661 85859861 + -2.23982 NA promoter-TSS (NM_013882) promoter-TSS (NM_013882) 54 NM_001168672 29870 Mm.20858 NM_013882 ENSMUSG00000022385 Gtse1 B99|Gtse-1 G two S phase expressed protein 1 protein-coding 0.105000 0.651741 Oct4_nocontrol_ChIP_peaks_unique-334 chr8 78688885 78689085 + -2.34585 NA intron (NR_104094, intron 6 of 9) RMER12C|LTR|ERVK 132167 NM_001191004 78651 Mm.28694 NM_030145 ENSMUSG00000031683 Lsm6 1500031N17Rik|2410088K19Rik|AI747288 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 0.005000 0.363184 -59(CATGCATATGCACA,+,0.00),-59(CATGCATATGCACA,-,0.00),-41(TATACATATGCATA,+,0.00),-41(TATACATATGCATA,-,0.00),-1(CATGCATATGCACA,+,0.00),-1(CATGCATATGCACA,-,0.00) -66(ACATACTCATGCATAT,+,0.00) merged_common-7 chr1 132222278 132222478 + -2.34585 NA intron (NM_001033250, intron 1 of 3) intron (NM_001033250, intron 1 of 3) -3936 NM_001311103 213409 Mm.426321 NM_001033250 ENSMUSG00000079330 Lemd1 4930540I23Rik|6430514M23Rik|AI428128|LEMP-1 LEM domain containing 1 protein-coding 0.015000 0.527363 -4(CATGCATATGCATG,+,0.00),-4(CATGCATATGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-366 chr9 108797572 108797772 + -2.37372 NA intron (NM_029634, intron 1 of 5) intron (NM_029634, intron 1 of 5) 1678 NM_029634 76500 Mm.276336 NM_029634 ENSMUSG00000032599 Ip6k2 1500005N04Rik|AW050208|Ihpk2 inositol hexaphosphate kinase 2 protein-coding 0.005000 0.477612 ePOU_nocontrol_ChIP_peaks_unique-82 chr16 13360522 13360722 + -2.37372 NA intron (NM_153588, intron 1 of 14) intron (NM_153588, intron 1 of 14) 2201 NM_153588 239719 Mm.270643 NM_153588 ENSMUSG00000009569 Mrtfb Gt4-1|MRTF-B|Mkl2|mKIAA1243 myocardin related transcription factor B protein-coding 0.000000 0.368159 9(CCTGCATATTCACA,+,0.00),23(AATGCAAATTCATA,+,0.00),23(AATGCAAATTCATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-294 chr6 4803237 4803437 + -2.37372 NA Intergenic Intergenic 12991 NR_157243 102637299 Mm.402076 NR_157243 ENSMUSG00000093570 Gm20714 - predicted gene 20714 ncRNA 0.000000 0.338308 -14(CATGAATATGCATT,+,0.00),-14(CATGAATATGCATT,-,0.00) -49(ATTTTCATAAGAAATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-212 chr2 70952067 70952267 + -2.45205 NA Intergenic Intergenic 103439 NM_145524 228019 Mm.490343 NM_145524 ENSMUSG00000041975 Mettl8 BC004636|Tip methyltransferase like 8 protein-coding 0.005000 0.398010 -14(CATGCATATTCAAA,+,0.00),-14(CATGCATATTCAAA,-,0.00) -83(ATTAGCATGCCAAAGT,-,0.00) merged_common-23 chr11 90490333 90490533 + -2.50762 NA intron (NM_011505, intron 17 of 17) intron (NM_011505, intron 17 of 17) -99516 NM_172563 217082 Mm.158903 NM_172563 ENSMUSG00000003949 Hlf E230015K02Rik hepatic leukemia factor protein-coding 0.020000 0.402985 Oct4_nocontrol_ChIP_peaks_unique-204 chr2 46158816 46159016 + -2.52043 NA Intergenic Lx10|LINE|L1 462311 NR_040497 69405 Mm.396184 NR_040497 ENSMUSG00000086202 1700019E08Rik - RIKEN cDNA 1700019E08 gene ncRNA 0.000000 0.368159 -23(CATGCATATTCATT,+,0.00),-23(CATGCATATTCATT,-,0.00) -20(GCATATTCATTCAAAC,+,0.00),58(ATGTACATAACAATAC,-,0.00) merged_common-93 chr2 105370233 105370433 + -2.52043 NA intron (NM_028747, intron 3 of 3) intron (NM_028747, intron 3 of 3) 28986 NM_009037 19672 Mm.4876 NM_009037 ENSMUSG00000005973 Rcn1 Rcn reticulocalbin 1 protein-coding 0.015000 0.432836 -36(TGTGCATATGTATG,-,0.00),-16(TTTGCATATGCATG,+,0.00),-16(TTTGCATATGCATG,-,0.00) merged_common-124 chr4 95684779 95684979 + -2.52043 NA intron (NM_029347, intron 5 of 10) intron (NM_029347, intron 5 of 10) 105458 NM_029347 75578 Mm.276098 NM_029347 ENSMUSG00000028573 Fggy 2310009E04Rik FGGY carbohydrate kinase domain containing protein-coding 0.000000 0.477612 Oct4_nocontrol_ChIP_peaks_unique-337 chr8 95434357 95434557 + -2.52046 NA intron (NM_008187, intron 1 of 5) CpG 412 NM_008187 14894 Mm.2080 NM_008187 ENSMUSG00000031796 Cfap20 2600014O15Rik|AL024127|Gtl3|T10-2A2 cilia and flagella associated protein 20 protein-coding 0.055000 0.621891 Oct4_nocontrol_ChIP_peaks_unique-158 chr17 5016647 5016847 + -2.52046 NA intron (NM_001085355, intron 1 of 19) intron (NM_001085355, intron 1 of 19) 21673 NM_001085355 239985 Mm.133401 NM_001085355 ENSMUSG00000069729 Arid1b 8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235 AT rich interactive domain 1B (SWI-like) protein-coding 0.000000 0.457711 73(TTGTGCATGACAAAGG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-257 chr3 125881855 125882055 + -2.52046 NA intron (NM_011674, intron 2 of 5) intron (NM_011674, intron 2 of 5) 56697 NR_149311 22239 Mm.306021 NM_011674 ENSMUSG00000032854 Ugt8a AI850488|AW455908|Cgt|Ugt8|mCerGT UDP galactosyltransferase 8A protein-coding 0.000000 0.323383 merged_common-76 chr18 46920452 46920652 + -2.52046 NA Intergenic (TC)n|Simple_repeat|Simple_repeat -1263 NM_001033446 381142 Mm.329423 NM_001033446 ENSMUSG00000073568 Arl14epl Gm949 ADP-ribosylation factor-like 14 effector protein-like protein-coding 0.005000 0.417910 Oct4_nocontrol_ChIP_peaks_unique-236 chr2 134523365 134523565 + -2.52046 NA intron (NM_010403, intron 3 of 7) intron (NM_010403, intron 3 of 7) 30887 NM_010403 15112 Mm.26634 NM_010403 ENSMUSG00000027261 Hao1 GOX|Gox1|Hao-1 hydroxyacid oxidase 1, liver protein-coding 0.000000 0.353234 Oct4_nocontrol_ChIP_peaks_unique-38 chr10 25258153 25258353 + -2.52046 NA intron (NM_018747, intron 5 of 7) intron (NM_018747, intron 5 of 7) 40910 NM_018747 432442 Mm.485937 NM_018747 ENSMUSG00000039166 Akap7 6430401D08|AI662165|AKAP15|Akap18|BB170514 A kinase (PRKA) anchor protein 7 protein-coding 0.015000 0.492537 Oct4_nocontrol_ChIP_peaks_unique-29 chr1 188260777 188260977 + -2.52046 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -1961 NM_021408 22283 Mm.331238 NM_021408 ENSMUSG00000026609 Ush2a A930011D15Rik|A930037M10Rik|Gm676|Gm983|Mush2a|Ushrn usherin protein-coding 0.000000 0.407960 -29(TATGCATATTCATG,+,0.00),-29(TATGCATATTCATG,-,0.00),-7(TGTGCATATGCATG,+,0.00),-7(TGTGCATATGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-76 chr11 102248840 102249040 + -2.52046 NA promoter-TSS (NM_153544) promoter-TSS (NM_153544) 58 NM_153544 217216 Mm.247335 NM_153544 ENSMUSG00000034773 BC030867 - cDNA sequence BC030867 protein-coding 0.065000 0.562189 Oct4_nocontrol_ChIP_peaks_unique-73 chr11 81832272 81832472 + -2.52046 NA intron (NM_001034013, intron 1 of 9) ORR1B2-int|LTR|ERVL-MaLR -28305 NR_038010 71388 Mm.158687 NR_038010 ENSMUSG00000020703 5530401A14Rik - RIKEN cDNA 5530401A14 gene ncRNA 0.000000 0.407960 Oct4_nocontrol_ChIP_peaks_unique-79 chr12 13270096 13270296 + -2.52046 NA intron (NM_027706, intron 1 of 51) intron (NM_027706, intron 1 of 51) 1069 NM_027706 71169 Mm.177520 NM_027706 ENSMUSG00000020576 Nbas 4933425L03Rik|Nag neuroblastoma amplified sequence protein-coding 0.020000 0.393035 Oct4_nocontrol_ChIP_peaks_unique-261 chr3 144478258 144478458 + -2.52046 NA intron (NM_001355234, intron 1 of 6) intron (NM_001355234, intron 1 of 6) 91858 NM_001355234 23908 Mm.12863 NM_011828 ENSMUSG00000040151 Hs2st1 2OST|AW214369|Hs2st|mKIAA0448 heparan sulfate 2-O-sulfotransferase 1 protein-coding 0.015000 0.353234 60(ATTTCCATGACATTGC,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-231 chr2 125279492 125279692 + -2.52046 NA Intergenic B3A|SINE|B2 32077 NM_023595 110074 Mm.282499 NM_023595 ENSMUSG00000027203 Dut 5031412I06Rik|5133400F09Rik|D2Bwg0749e|Dutp|dUTPase deoxyuridine triphosphatase protein-coding 0.000000 0.383085 18(ATGTGCATAAAAGTGC,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-304 chr6 72216955 72217155 + -2.52046 NA intron (NM_153778, intron 2 of 2) intron (NM_153778, intron 2 of 2) 18522 NM_153778 71093 Mm.87449 NM_153778 ENSMUSG00000037621 Atoh8 4933425C05Rik|Hath6|Math6|bHLHa21|okadin atonal bHLH transcription factor 8 protein-coding 0.060000 0.696517 merged_common-164 chrUn_JH584304 2464 2664 + -2.52046 NA Intergenic (CTGTG)n|Simple_repeat|Simple_repeat 57125 NR_003518 66776 Mm.247625 NR_003518 Pisd-ps3 4933439C20Rik phosphatidylserine decarboxylase, pseudogene 3 pseudo 0.000000 0.557214 Oct4_nocontrol_ChIP_peaks_unique-3 chr1 12683375 12683575 + -2.52046 NA Intergenic Intergenic -8955 NM_001198566 240725 Mm.45563 NM_172294 ENSMUSG00000016918 Sulf1 AI467640|AW121680|mKIAA1077 sulfatase 1 protein-coding 0.000000 0.313433 Oct4_nocontrol_ChIP_peaks_unique-130 chr15 12652704 12652904 + -2.52046 NA intron (NM_001081064, intron 2 of 25) ORR1D2|LTR|ERVL-MaLR 87088 NM_001081064 68070 Mm.423205 NM_001081064 ENSMUSG00000022197 Pdzd2 4930537L06Rik|A930022H17Rik|Gm21706|Gm82|Pdzk3 PDZ domain containing 2 protein-coding 0.025000 0.482587 -14(GTTTGAATGAGAATGA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-175 chr6 39061281 39061481 + -2.52046 NA intron (NM_011539, intron 9 of 12) intron (NM_011539, intron 9 of 12) 6205 NR_040523 69986 Mm.490941 NR_040523 ENSMUSG00000100121 1700025N23Rik - RIKEN cDNA 1700025N23 gene ncRNA 0.005000 0.477612 -42(CTTTGCATGAACAAAT,-,0.00) merged_common-28 chr12 52604761 52604961 + -2.52046 NA Intergenic Intergenic -2539 NR_045910 73278 Mm.396209 NR_045910 ENSMUSG00000100315 1700031P21Rik - RIKEN cDNA 1700031P21 gene ncRNA 0.080000 0.631841 Oct4_nocontrol_ChIP_peaks_unique-292 chr5 125130702 125130902 + -2.52046 NA intron (NM_011424, intron 1 of 46) intron (NM_011424, intron 1 of 46) 48412 NM_001253905 20602 Mm.278646 NM_011424 ENSMUSG00000029478 Ncor2 N-CoR|SMRT|SMRTe nuclear receptor co-repressor 2 protein-coding 0.015000 0.477612 Oct4_nocontrol_ChIP_peaks_unique-262 chr3 145358069 145358269 + -2.52046 NA intron (NM_001317733, intron 13 of 59) intron (NM_001317733, intron 13 of 59) 65697 NM_001317733 71355 Mm.235570 NM_027770 ENSMUSG00000028197 Col24a1 5430404K19Rik collagen, type XXIV, alpha 1 protein-coding 0.000000 0.303483 -49(CTTTACATAAAAATAA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-56 chr10 98007827 98008027 + -2.52046 NA Intergenic Lx9|LINE|L1 -40837 NR_033537 100038699 Mm.467933 NR_033537 ENSMUSG00000074776 Gm10754 - predicted gene 10754 ncRNA 0.010000 0.363184 Oct4_nocontrol_ChIP_peaks_unique-115 chr14 20938564 20938764 + -2.52046 NA intron (NM_009502, intron 1 of 20) intron (NM_009502, intron 1 of 20) 9266 NM_009502 22330 Mm.279361 NM_009502 ENSMUSG00000021823 Vcl 9430097D22|AA571387|AI462105|AW545629 vinculin protein-coding 0.005000 0.422886 Oct4_nocontrol_ChIP_peaks_unique-36 chr10 21684285 21684485 + -2.52046 NA Intergenic Intergenic -6460 NR_045843 432436 Mm.244553 NM_001004162 ENSMUSG00000056716 Gm5420 EG432436 predicted gene 5420 ncRNA 0.010000 0.343284 merged_common-55 chr15 57838892 57839092 + -2.52046 NA 3' UTR (NM_199449, exon 4 of 4) 3' UTR (NM_199449, exon 4 of 4) 53426 NM_024207 67819 Mm.289387 NM_024207 ENSMUSG00000022365 Derl1 1110021N07Rik|AI195141|AW551338|Derlin-1 Der1-like domain family, member 1 protein-coding 0.015000 0.407960 Oct4_nocontrol_ChIP_peaks_unique-62 chr11 5924177 5924377 + -2.52046 NA intron (NM_010292, intron 1 of 9) L1MB4|LINE|L1 -9142 NM_001287386 103988 Mm.220358 NM_010292 ENSMUSG00000041798 Gck GLK|Gk|Gls006|HK4|HKIV|HXKP|Hlb62|MODY2 glucokinase protein-coding 0.010000 0.393035 -34(AATGCATATGCAAA,+,0.00),-34(AATGCATATGCAAA,-,0.00) merged_common-12 chr10 31212157 31212357 + -2.52046 NA Intergenic RLTR10D2|LTR|ERVK -101148 NM_027168 69692 Mm.245537 NM_027168 ENSMUSG00000000295 Hddc2 2310057G13Rik HD domain containing 2 protein-coding 0.025000 0.492537 -36(ACTTTTCCATTCAAAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-81 chr16 13109639 13109839 + -2.52046 NA promoter-TSS (NM_015769) promoter-TSS (NM_015769) 3 NM_015769 50505 Mm.287837 NM_015769 ENSMUSG00000022545 Ercc4 AI606920|Xpf excision repair cross-complementing rodent repair deficiency, complementation group 4 protein-coding 0.105000 0.616915 Oct4_nocontrol_ChIP_peaks_unique-121 chr14 59852374 59852574 + -2.52046 NA intron (NM_015803, intron 26 of 35) intron (NM_015803, intron 26 of 35) 227193 NM_145463 219134 Mm.275409 NM_145463 ENSMUSG00000044461 Shisa2 9430059P22Rik|MAd2|Tmem46|mShisa|shisa shisa family member 2 protein-coding 0.020000 0.358209 11(TATGCATATGCATG,+,0.00),11(TATGCATATGCATG,-,0.00) 19(TGCATGTTATGCAAAT,+,0.00) ePOU_nocontrol_ChIP_peaks_unique-86 chr16 58537908 58538108 + -2.52046 NA Intergenic Intergenic -13755 NM_001357435 54613 Mm.212742 NM_018784 ENSMUSG00000022747 St3gal6 1700023B24Rik|AI930218|AW552396|Siat10|St3galVI ST3 beta-galactoside alpha-2,3-sialyltransferase 6 protein-coding 0.005000 0.353234 merged_common-132 chr5 28209906 28210106 + -2.52046 NA 5' UTR (NM_001310511, exon 1 of 3) 5' UTR (NM_001310511, exon 1 of 3) 162 NM_001310511 269637 Mm.68286 NM_175651 ENSMUSG00000044681 Cnpy1 1500012D20Rik|9630008K15Rik|AI853839 canopy FGF signaling regulator 1 protein-coding 0.065000 0.597015 31(GTTTGCATGACAACTG,-,0.00) merged_common-64 chr16 87487871 87488071 + -2.55139 NA intron (NM_009840, intron 7 of 14) intron (NM_009840, intron 7 of 14) 7898 NM_009840 12469 Mm.328673 NM_009840 ENSMUSG00000025613 Cct8 AI132397|Cctq|Tcpq chaperonin containing Tcp1, subunit 8 (theta) protein-coding 0.005000 0.383085 6(CATGCATATGCATA,+,0.00),6(CATGCATATGCATA,-,0.00),12(TATGCATATATATA,-,0.00) 42(ATCAGCAAAACAATCC,-,0.00) merged_common-89 chr2 71652783 71652983 + -2.75774 NA intron (NR_039557, intron 2 of 3) intron (NR_039557, intron 2 of 3) -66534 NR_037979 381371 Mm.330284 NM_201366 ENSMUSG00000064263 Platr26 Gm1631 pluripotency associated transcript 26 ncRNA 0.010000 0.432836 Oct4_nocontrol_ChIP_peaks_unique-227 chr2 118390300 118390500 + -2.75774 NA intron (NM_001177806, intron 1 of 37) MER46C|DNA|TcMar-Tigger 1288 NM_001177806 27103 Mm.217616 NM_013719 ENSMUSG00000005102 Eif2ak4 2610011M03|GCN2|MGCN2 eukaryotic translation initiation factor 2 alpha kinase 4 protein-coding 0.010000 0.402985 1(TATGAATATGCAAA,+,0.00),1(TATGAATATGCAAA,-,0.00) merged_common-26 chr11 115403714 115403914 + -2.75774 NA promoter-TSS (NM_001347645) promoter-TSS (NM_001347645) 62 NM_001361462 68572 Mm.271062 NM_026729 ENSMUSG00000018858 Mrpl58 1110001A02Rik|1110002E03Rik|Ict1|MRP-L58 mitochondrial ribosomal protein L58 protein-coding 0.100000 0.671642 Oct4_nocontrol_ChIP_peaks_unique-68 chr11 68394109 68394309 + -2.75774 NA Intergenic CR1_Mam|LINE|CR1 -7383 NM_008744 18208 Mm.39095 NM_008744 ENSMUSG00000020902 Ntn1 AI561871|BC019633|Netrin-1 netrin 1 protein-coding 0.000000 0.527363 merged_common-20 chr11 10547184 10547384 + -2.75774 NA Intergenic RLTR22_Mus|LTR|ERVK -566732 NM_177033 319922 Mm.337851 NM_177033 ENSMUSG00000050830 Vwc2 A930041G11Rik|G11|PSST739|UNQ739|cradin von Willebrand factor C domain containing 2 protein-coding 0.000000 0.373134 Oct4_nocontrol_ChIP_peaks_unique-43 chr10 32136633 32136833 + -2.75774 NA intron (NM_001013411, intron 3 of 6) intron (NM_001013411, intron 3 of 6) -527008 NM_001146349 268291 Mm.295212 NM_001146349 ENSMUSG00000063760 Rnf217 AU016819|Ibrdc1 ring finger protein 217 protein-coding 0.015000 0.383085 10(CATGCATATTCATT,+,0.00),10(CATGCATATTCATT,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-270 chr4 76447687 76447887 + -2.75774 NA intron (NR_160919, intron 10 of 39) (CATA)n|Simple_repeat|Simple_repeat -103544 NM_001368993 19266 Mm.184021 NM_011211 ENSMUSG00000028399 Ptprd 1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta protein tyrosine phosphatase, receptor type, D protein-coding 0.000000 0.293532 -12(AATGCATATGTACA,+,0.00),-12(AATGCATATGTACA,-,0.00) ePOU_nocontrol_ChIP_peaks_unique-77 chr15 28645346 28645546 + -2.75774 NA Intergenic Intergenic 441680 NM_133365 110082 Mm.248464 NM_133365 ENSMUSG00000022262 Dnah5 AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603 dynein, axonemal, heavy chain 5 protein-coding 0.000000 0.363184 -19(CCTTTGATATGTATAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-280 chr5 25408490 25408690 + -2.75774 NA intron (NM_001081383, intron 4 of 58) intron (NM_001081383, intron 4 of 58) 90193 NM_001081383 231051 Mm.332268 NM_001081383 ENSMUSG00000038056 Kmt2c E330008K23Rik|HALR|Mll3 lysine (K)-specific methyltransferase 2C protein-coding 0.000000 0.278607 -18(AATACATATGCATA,+,0.00),-18(AATACATATGCATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-60 chr10 128777710 128777910 + -2.75774 NA Intergenic Intergenic -13100 NM_001164197 58223 Mm.131266 NM_021412 ENSMUSG00000025355 Mmp19 - matrix metallopeptidase 19 protein-coding 0.020000 0.467662 Oct4_nocontrol_ChIP_peaks_unique-42 chr10 30810471 30810671 + -2.75774 NA Intergenic Intergenic -7245 NM_172495 211329 Mm.297903 NM_172495 ENSMUSG00000039697 Ncoa7 9030406N13Rik nuclear receptor coactivator 7 protein-coding 0.015000 0.378109 19(GATACATATACATA,-,0.00) merged_common-68 chr17 44912119 44912319 + -2.75774 NA intron (NR_158206, intron 2 of 11) intron (NR_158206, intron 2 of 11) -31334 NM_029257 75341 Mm.386821 NM_029257 4930564C03Rik - RIKEN cDNA 4930564C03 gene protein-coding 0.010000 0.373134 ePOU_nocontrol_ChIP_peaks_unique-124 chr2 126455371 126455571 + -2.75774 NA intron (NM_001359975, intron 6 of 27) Lx8b|LINE|L1 36082 NM_001080944 241633 Mm.222235 NM_001080944 ENSMUSG00000060131 Atp8b4 Im ATPase, class I, type 8B, member 4 protein-coding 0.010000 0.348259 Oct4_nocontrol_ChIP_peaks_unique-201 chr2 38287182 38287382 + -2.75774 NA 5' UTR (NM_146122, exon 1 of 22) 5' UTR (NM_146122, exon 1 of 22) 102 NM_001362977 227801 Mm.314245 NM_146122 ENSMUSG00000035392 Dennd1a 6030446I19Rik|connecdenn DENN/MADD domain containing 1A protein-coding 0.145000 0.781095 Oct4_nocontrol_ChIP_peaks_unique-361 chr9 90168817 90169017 + -2.75774 NA intron (NM_001003911, intron 1 of 23) intron (NM_001003911, intron 1 of 23) 5939 NM_001003911 108153 Mm.102141 NM_001003911 ENSMUSG00000032363 Adamts7 ADAM-TS7|ADAMTS7B a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 7 protein-coding 0.005000 0.522388 Oct4_nocontrol_ChIP_peaks_unique-254 chr3 108147847 108148047 + -2.75774 NA TTS (NM_001305461) TTS (NM_001305461) -1795 NM_010306 14679 Mm.271703 NM_010306 ENSMUSG00000000001 Gnai3 AI158965|AW537698|Galphai3|Gnai-3 guanine nucleotide binding protein (G protein), alpha inhibiting 3 protein-coding 0.005000 0.393035 Oct4_nocontrol_ChIP_peaks_unique-194 chr2 6998821 6999021 + -2.77757 NA intron (NM_001110231, intron 3 of 15) intron (NM_001110231, intron 3 of 15) -70199 NR_027890 68144 Mm.483289 NM_026575 5031426D15Rik - RIKEN cDNA 5031426D15 gene ncRNA 0.005000 0.378109 Oct4_nocontrol_ChIP_peaks_unique-188 chr19 30979157 30979357 + -2.77757 NA intron (NM_001013833, intron 4 of 17) RMER12|LTR|ERVK -48295 NR_033643 625995 Mm.454508 NR_033643 Gm6642 EG625995 ubiquitin-like 5 pseudogene pseudo 0.005000 0.293532 4(TATGCATGTGCATA,+,0.00),4(TATGCATGTGCATA,-,0.00) merged_common-95 chr2 115670897 115671097 + -2.77757 NA intron (NM_207264, intron 7 of 10) RLTR17B_Mm|LTR|ERVK 32272 NR_035476 100316703 NR_035476 ENSMUSG00000088606 Mir1951 mir-1951|mmu-mir-1951 microRNA 1951 ncRNA 0.015000 0.388060 ePOU_nocontrol_ChIP_peaks_unique-76 chr15 25412491 25412691 + -2.96329 NA intron (NM_027395, intron 1 of 1) CpG 1173 NM_027395 70350 Mm.29586 NM_027395 ENSMUSG00000045763 Basp1 2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22 brain abundant, membrane attached signal protein 1 protein-coding 0.060000 0.502488 10(GATGAATATTCATG,+,0.00),10(GATGAATATTCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-100 chr13 9951568 9951768 + -2.96329 NA intron (NM_033269, intron 4 of 4) intron (NM_033269, intron 4 of 4) -186347 NM_001347474 66505 Mm.397307 NM_144516 ENSMUSG00000021156 Zmynd11 2210402G22Rik|BS69 zinc finger, MYND domain containing 11 protein-coding 0.000000 0.388060 32(TGTACATATGCATG,-,0.00),58(TATGCATATGCATA,+,0.00),58(TATGCATATGCATA,-,0.00),64(TATGCATATATATG,-,0.00),68(CATATATATGCATG,+,0.00),68(CATATATATGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-2 chr1 6453525 6453725 + -2.96329 NA Intergenic Intergenic -33606 NM_001244693 240690 Mm.234612 NM_173868 ENSMUSG00000033740 St18 AV348974|Myt3|NZF-3|Nzf3|mKIAA0535 suppression of tumorigenicity 18 protein-coding 0.000000 0.313433 Oct4_nocontrol_ChIP_peaks_unique-122 chr14 70351997 70352197 + -2.96329 NA promoter-TSS (NM_001135151) promoter-TSS (NM_001135151) -673 NM_144808 213053 Mm.270647 NM_144808 ENSMUSG00000022094 Slc39a14 FAD-123|ZIP-14|Zip14|fad123 solute carrier family 39 (zinc transporter), member 14 protein-coding 0.015000 0.427861 Oct4_nocontrol_ChIP_peaks_unique-66 chr11 56154660 56154860 + -2.96329 NA Intergenic RLTR31D_MM|LTR|ERVK -113773 NM_153079 216749 Mm.213205 NM_153079 ENSMUSG00000037393 Nmur2 Nmu2r neuromedin U receptor 2 protein-coding 0.000000 0.353234 Oct4_nocontrol_ChIP_peaks_unique-371 chrX 155318556 155318756 + -2.96329 NA Intergenic Intergenic 19804 NM_001313711 53381 Mm.247542 NM_016764 ENSMUSG00000025289 Prdx4 AOE372|Prx-iv|Prx4|TRANK peroxiredoxin 4 protein-coding 0.000000 0.243781 -53(TATGAATATGTAAA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-162 chr17 27948469 27948669 + -2.96329 NA intron (NM_181413, intron 1 of 24) B3A|SINE|B2 39263 NM_181413 224650 Mm.32556 NM_181413 ENSMUSG00000024219 Anks1 Anks1a|mKIAA0229 ankyrin repeat and SAM domain containing 1 protein-coding 0.005000 0.398010 5(CATGAATATGCATG,+,0.00),5(CATGAATATGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-290 chr5 113937724 113937924 + -2.96329 NA 3' UTR (NM_001363469, exon 14 of 14) 3' UTR (NM_001363469, exon 14 of 14) -29118 NM_011779 23790 Mm.260158 NM_011779 ENSMUSG00000004530 Coro1c AL022675|AW455561|AW548837|CRN2 coronin, actin binding protein 1C protein-coding 0.030000 0.467662 ePOU_nocontrol_ChIP_peaks_unique-220 chr9 42648050 42648250 + -2.96329 NA intron (NM_175481, intron 8 of 20) MER2|DNA|TcMar-Tigger -175892 NM_173038 272589 Mm.34483 NM_173038 ENSMUSG00000037287 Tbcel D330014K23|E130107N23Rik|Lrrc35 tubulin folding cofactor E-like protein-coding 0.005000 0.412935 12(ATTTACATTACAGTAG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-226 chr2 117064504 117064704 + -2.99785 NA Intergenic (TA)n|Simple_repeat|Simple_repeat -56467 NM_033524 114715 Mm.245890 NM_033524 ENSMUSG00000027351 Spred1 5730461F13Rik|AL024345|AW047647 sprouty protein with EVH-1 domain 1, related sequence protein-coding 0.005000 0.358209 -10(TGTGCATATGTATA,+,0.00),-10(TGTGCATATGTATA,-,0.00),4(TATGCATATATATA,-,0.00) 32(ATATAATTATGGAAAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-114 chr14 20830814 20831014 + -3.09719 NA Intergenic B3|SINE|B2 -5748 NM_008873 18792 Mm.4183 NM_008873 ENSMUSG00000021822 Plau u-PA|uPA plasminogen activator, urokinase protein-coding 0.005000 0.383085 -58(TGTGCATATGTATG,-,0.00),-42(TGTGCATATGTATG,-,0.00),-26(TGTGCATATGTATG,-,0.00),-10(TGTGCATATGCATG,+,0.00),-10(TGTGCATATGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-222 chr2 106938074 106938274 + -3.14459 NA Intergenic Intergenic 32217 NM_173750 212772 Mm.381231 NM_173750 ENSMUSG00000027122 Arl14ep 2700007P21Rik|4930448O08Rik|ARF7EP ADP-ribosylation factor-like 14 effector protein protein-coding 0.005000 0.422886 -24(TCTGCATATGCAAA,-,0.00) 11(CTTTTTTCTTGGAAAT,+,0.00),59(ATTTCAATAACAGAGC,-,0.00) merged_common-17 chr10 116934630 116934830 + -3.27849 NA intron (NM_001359645, intron 3 of 10) L1MEc|LINE|L1 15723 NM_001359645 216363 Mm.336394 NM_001003950 ENSMUSG00000064181 Rab3ip B230311A06|Gtpat12|Rabin3 RAB3A interacting protein protein-coding 0.010000 0.383085 Oct4_nocontrol_ChIP_peaks_unique-234 chr2 128055201 128055401 + -3.30677 NA intron (NM_028765, intron 14 of 17) RLTR20C1_MM|LTR|ERVK -70737 NM_009754 12125 Mm.141083 NM_009754 ENSMUSG00000027381 Bcl2l11 1500006F24Rik|Bim|Bod|bcl2-L-11 BCL2-like 11 (apoptosis facilitator) protein-coding 0.005000 0.378109 26(TATTCATATTCATT,+,0.00),26(TATTCATATTCATT,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-70 chr11 70415599 70415799 + -3.30677 NA Intergenic RLTR17B_Mm|LTR|ERVK -5668 NM_029231 75273 Mm.340601 NM_029231 ENSMUSG00000018921 Pelp1 4930563C04Rik|MNAR proline, glutamic acid and leucine rich protein 1 protein-coding 0.010000 0.363184 -14(TGTACATATGCATG,-,0.00) merged_common-117 chr4 24531048 24531248 + -3.30677 NA intron (NM_199467, intron 11 of 23) intron (NM_199467, intron 11 of 23) 34697 NM_199467 212377 Mm.120919 NM_199467 ENSMUSG00000045751 Mms22l F730047E07Rik|Gm134 MMS22-like, DNA repair protein protein-coding 0.000000 0.383085 -43(CATGCATATTCATT,+,0.00),-43(CATGCATATTCATT,-,0.00) 13(ATCTCCATAAGAAGAA,-,0.00),73(GCATTGTAATGCATAT,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-339 chr8 103995387 103995587 + -3.30677 NA Intergenic Lx9|LINE|L1 -106138 NM_009868 12562 Mm.21767 NM_009868 ENSMUSG00000031871 Cdh5 7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec cadherin 5 protein-coding 0.005000 0.343284 40(TGTACATATTCATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-10 chr1 39152046 39152246 + -3.30677 NA Intergenic Lx9|LINE|L1 34846 NR_105767 102466631 NR_105767 ENSMUSG00000098833 Mir6349 Gm27558|mmu-mir-6349 microRNA 6349 ncRNA 0.000000 0.343284 -76(TATGCATATGCACA,+,0.00),-76(TATGCATATGCACA,-,0.00),-43(AATGTATATGCATG,+,0.00),-43(AATGTATATGCATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-9 chr1 35933185 35933385 + -3.45348 NA Intergenic RLTR17B_Mm|LTR|ERVK -135115 NM_015818 50785 Mm.213566 NM_015818 ENSMUSG00000045216 Hs6st1 6Ost1 heparan sulfate 6-O-sulfotransferase 1 protein-coding 0.000000 0.417910 -30(AATGTATTATGCACA,+,0.00) -49(TATGTATATGTATA,+,0.00) Oct4_nocontrol_ChIP_peaks_unique-137 chr15 51813251 51813451 + -3.45348 NA intron (NM_080635, intron 2 of 7) Lx10|LINE|L1 52110 NM_080635 68135 Mm.289800 NM_080635 ENSMUSG00000022312 Eif3h 1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3 eukaryotic translation initiation factor 3, subunit H protein-coding 0.025000 0.437811 Oct4_nocontrol_ChIP_peaks_unique-305 chr6 89480490 89480690 + -3.58741 NA intron (NM_025351, intron 4 of 7) L1MA5|LINE|L1 115062 NM_001167736 66098 Mm.20313 NM_025351 ENSMUSG00000030086 Chchd6 0710001P09Rik|1700021B03Rik|Micos25 coiled-coil-helix-coiled-coil-helix domain containing 6 protein-coding 0.005000 0.243781 8(CATGAATATGCATA,+,0.00),8(CATGAATATGCATA,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-101 chr13 12246668 12246868 + -3.71062 NA intron (NM_001081128, intron 6 of 32) intron (NM_001081128, intron 6 of 32) 11345 NM_001081128 238505 Mm.40335 NM_001081128 ENSMUSG00000021311 Mtr AI894170|D830038K18Rik|MS 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 0.010000 0.343284 -38(CATGCATATGTACA,+,0.00) 58(ATTAAAAAAAAAAAAG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-336 chr8 90197448 90197648 + -3.82470 NA Intergenic Intergenic 150704 NM_172913 244579 Mm.302755 NM_172913 ENSMUSG00000043668 Tox3 500-9|BC052044|C230068E13|CAGF9|Tnrc9 TOX high mobility group box family member 3 protein-coding 0.010000 0.283582 -11(TATGAATATGTATG,+,0.00),-11(TATGAATATGTATG,-,0.00) Oct4_nocontrol_ChIP_peaks_unique-312 chr6 144733391 144733591 + -3.93089 NA Intergenic Intergenic 60623 NR_040519 66760 Mm.233631 NR_040519 ENSMUSG00000085785 Sox5os3 4933425H06Rik SRY (sex determining region Y)-box 5, opposite strand 3 ncRNA 0.000000 0.288557 -27(TGTACATATGCATG,-,0.00)