PeakID (cmd=annotatePeaks.pl OSKM_unique_ESKMvsOSKM-D3_Manorm_summits_w1000.bed mm10 -m MORE+1_VM_v2.0.mot MORE_VM_v2.0.mot soxoct_VM_2.mot -size -100,100) Chr Start End Strand Peak Score Focus Ratio/Region Size Annotation Detailed Annotation Distance to TSS Nearest PromoterID Entrez ID Nearest Unigene Nearest Refseq Nearest Ensembl Gene Name Gene Alias Gene Description Gene Type CpG% GC% MORE+1_VM_v2 Distance From Peak(sequence,strand,conservation) MORE_VM_v2 Distance From Peak(sequence,strand,conservation) soxoct_Marson_VM_soxpartStringent Distance From Peak(sequence,strand,conservation) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-366 chr3 80777213 80777413 + -1.00022 NA intron (NR_152148, intron 2 of 17) intron (NR_152148, intron 2 of 17) 25522 NR_152148 14800 Mm.220224 NM_013540 ENSMUSG00000033981 Gria2 GluA2|GluR-B|Glur-2|Glur2|gluR-K2 glutamate receptor, ionotropic, AMPA2 (alpha 2) protein-coding 0.010000 0.388060 -5(TATTCATATGTATA,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-180 chr14 87398679 87398879 + -1.00022 NA Intergenic Intergenic -17804 NM_001253755 219249 Mm.35168 NM_172605 ENSMUSG00000022019 Tdrd3 4732418C03Rik|6720468N18 tudor domain containing 3 protein-coding 0.005000 0.402985 42(TCTCTGTCATTCAGAC,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-555 chr9 26805160 26805360 + -1.00071 NA intron (NM_153803, intron 1 of 19) intron (NM_153803, intron 1 of 19) 1208 NM_001310768 244757 Mm.293696 NM_153803 ENSMUSG00000036395 Glb1l2 - galactosidase, beta 1-like 2 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3525 chr9 41169975 41170175 + -1.00112 NA Intergenic Intergenic -12013 NM_176860 72828 Mm.133615 NM_176860 ENSMUSG00000032020 Ubash3b 2810457I06Rik|BB125008|STS-1|TULA-2|p70 ubiquitin associated and SH3 domain containing, B protein-coding 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3280 chr8 15072610 15072810 + -1.00112 NA intron (NM_008664, intron 6 of 36) intron (NM_008664, intron 6 of 36) 15057 NM_008664 17930 Mm.272115 NM_008664 ENSMUSG00000031461 Myom2 AW146149 myomesin 2 protein-coding 0.010000 0.467662 -62(ATTTGAATGAGCATAA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-37 chr1 187813415 187813615 + -1.00112 NA intron (NM_001357534, intron 2 of 7) intron (NM_001357534, intron 2 of 7) 161274 NM_001357535 26381 Mm.89989 NM_011935 ENSMUSG00000026610 Esrrg ERR3|Errg|NR3B3|mKIAA0832 estrogen-related receptor gamma protein-coding 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1586 chr17 17926568 17926768 + -1.00112 NA Intergenic RMER1A|Other|Other 38844 NM_008039 14289 Mm.378918 NM_008039 ENSMUSG00000052270 Fpr2 E330010I07Rik|Fpr-rs2 formyl peptide receptor 2 protein-coding 0.010000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-341 chr2 148595168 148595368 + -1.00112 NA Intergenic Intergenic -77347 NM_019761 56488 Mm.34663 NM_019761 ENSMUSG00000036992 Nxt1 1110001N02Rik NTF2-related export protein 1 protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1282 chr15 28628333 28628533 + -1.00112 NA Intergenic MLT2B3|LTR|ERVL 424667 NM_133365 110082 Mm.248464 NM_133365 ENSMUSG00000022262 Dnah5 AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603 dynein, axonemal, heavy chain 5 protein-coding 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3125 chr7 64167136 64167336 + -1.00112 NA intron (NM_001039104, intron 1 of 26) intron (NM_001039104, intron 1 of 26) 13401 NM_001039104 17364 Mm.38875 NM_018752 ENSMUSG00000030523 Trpm1 4732499L03Rik|AI606771|Ltrpc1|Mlsn1 transient receptor potential cation channel, subfamily M, member 1 protein-coding 0.010000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3507 chr9 29267299 29267499 + -1.00112 NA intron (NM_001357597, intron 2 of 8) intron (NM_001357597, intron 2 of 8) 145286 NM_001357601 235106 Mm.283138 NM_172290 ENSMUSG00000059974 Ntm 6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390 neurotrimin protein-coding 0.010000 0.398010 -57(CCAGTGCAATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-376 chr10 29529662 29529862 + -1.00112 NA intron (NM_028351, intron 1 of 4) intron (NM_028351, intron 1 of 4) 6105 NM_028351 72780 Mm.45191 NM_028351 ENSMUSG00000019880 Rspo3 2810459H04Rik|AW742308|Cristin1|Thsd2 R-spondin 3 protein-coding 0.000000 0.323383 75(TATTCATATTTATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2167 chr2 148595184 148595384 + -1.00112 NA Intergenic Intergenic -77331 NM_019761 56488 Mm.34663 NM_019761 ENSMUSG00000036992 Nxt1 1110001N02Rik NTF2-related export protein 1 protein-coding 0.005000 0.437811 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-408 chr4 79724328 79724528 + -1.00112 NA Intergenic MLT2B3|LTR|ERVL -1109785 NM_001282014 22178 Mm.30438 NM_031202 ENSMUSG00000005994 Tyrp1 Oca3|TRP-1|TRP1|Tyrp|b|brown|isa tyrosinase-related protein 1 protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3238 chr7 132165116 132165316 + -1.00112 NA Intergenic RMER17A-int|LTR|ERVK -10475 NM_018867 55987 Mm.471654 NM_018867 ENSMUSG00000030862 Cpxm2 4632435C11Rik|CPX-2|Cpx2 carboxypeptidase X 2 (M14 family) protein-coding 0.000000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1498 chr16 65309397 65309597 + -1.00112 NA Intergenic Intergenic -203713 NM_008310 15557 Mm.5040 NM_008310 ENSMUSG00000050783 Htr1f Htr1eb 5-hydroxytryptamine (serotonin) receptor 1F protein-coding 0.015000 0.318408 -53(TTTTTGTTATTTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-336 chr10 9536772 9536972 + -1.00112 NA Intergenic Intergenic 138336 NM_177271 320825 Mm.101115 NM_177271 ENSMUSG00000060487 Samd5 E130306M17Rik sterile alpha motif domain containing 5 protein-coding 0.030000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1284 chr15 29608809 29609009 + -1.00112 NA Intergenic Intergenic 104495 NR_039542 100628607 NR_039542 ENSMUSG00000092639 Mir3964 mmu-mir-3964|mu-mir-3964 microRNA 3964 ncRNA 0.005000 0.368159 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-556 chr9 29267308 29267508 + -1.00112 NA intron (NM_001357597, intron 2 of 8) intron (NM_001357597, intron 2 of 8) 145277 NM_001357601 235106 Mm.283138 NM_172290 ENSMUSG00000059974 Ntm 6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390 neurotrimin protein-coding 0.010000 0.412935 -66(CCAGTGCAATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2598 chr4 68536375 68536575 + -1.00112 NA Intergenic Intergenic -214514 NR_151548 102633975 NR_151548 Gm12911 - predicted gene 12911 ncRNA 0.010000 0.363184 -64(TTTCTGTCTTATAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2329 chr3 80777090 80777290 + -1.00282 NA intron (NR_152148, intron 2 of 17) ORR1F|LTR|ERVL-MaLR 25645 NR_152148 14800 Mm.220224 NM_013540 ENSMUSG00000033981 Gria2 GluA2|GluR-B|Glur-2|Glur2|gluR-K2 glutamate receptor, ionotropic, AMPA2 (alpha 2) protein-coding 0.015000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1011 chr13 94706644 94706844 + -1.00282 NA Intergenic Intergenic -82176 NM_009321 21371 Mm.379025 NM_009321 ENSMUSG00000042043 Tbca Tbca13 tubulin cofactor A protein-coding 0.020000 0.482587 -77(ATTAGCATCAGAAAGG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-217 chr15 94346986 94347186 + -1.00282 NA intron (NM_177431, intron 12 of 38) intron (NM_177431, intron 12 of 38) 57264 NM_177431 223838 Mm.214132 NM_177431 ENSMUSG00000022449 Adamts20 Adamst20|bt a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20 protein-coding 0.020000 0.427861 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-216 chr15 94346933 94347133 + -1.00282 NA intron (NM_177431, intron 12 of 38) intron (NM_177431, intron 12 of 38) 57317 NM_177431 223838 Mm.214132 NM_177431 ENSMUSG00000022449 Adamts20 Adamst20|bt a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20 protein-coding 0.015000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-211 chr1 120245865 120246065 + -1.00282 NA intron (NM_001085409, intron 2 of 5) intron (NM_001085409, intron 2 of 5) 19315 NM_133186 68428 Mm.181033 NM_133186 ENSMUSG00000026389 Steap3 1010001D01Rik|Tsap6|pHyde STEAP family member 3 protein-coding 0.010000 0.577114 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-52 chr10 34904824 34905024 + -1.00282 NA Intergenic Intergenic 421524 NM_010237 14302 Mm.332432 NM_010237 ENSMUSG00000019779 Frk BSK|BSK/IYK|C85044|GTK|RAK fyn-related kinase protein-coding 0.005000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-275 chr18 47027971 47028171 + -1.00336 NA intron (NM_178377, intron 5 of 6) intron (NM_178377, intron 5 of 6) 69195 NM_178377 69456 Mm.210734 NM_178377 ENSMUSG00000042705 Commd10 2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre COMM domain containing 10 protein-coding 0.010000 0.388060 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-57 chr10 46006541 46006741 + -1.00380 NA Intergenic Intergenic 198937 NR_040624 320363 Mm.123343 NR_040624 ENSMUSG00000110874 D030045P18Rik - RIKEN cDNA D030045P18 gene ncRNA 0.005000 0.313433 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-467 chr6 36238091 36238291 + -1.00380 NA Intergenic Intergenic -149893 NM_203491 243764 Mm.448632 NM_203491 ENSMUSG00000045613 Chrm2 AChR-M2|Chrm-2|M2 cholinergic receptor, muscarinic 2, cardiac protein-coding 0.010000 0.373134 58(CATGTATTTTTCATT,+,0.00) -55(CTATGCTTATTCTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3600 chr9 88023937 88024137 + -1.00380 NA Intergenic Intergenic -292777 NM_023814 76365 Mm.158789 NM_023814 ENSMUSG00000032419 Tbx18 2810012F10Rik|2810404D13Rik T-box18 protein-coding 0.010000 0.402985 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-43 chr10 14266127 14266327 + -1.00380 NA Intergenic Intergenic 278809 NM_001002268 215798 Mm.440142 NM_001002268 ENSMUSG00000039116 Adgrg6 1190004A11Rik|AI449247|AW045736|DREG|Gm222|Gpr126 adhesion G protein-coupled receptor G6 protein-coding 0.000000 0.328358 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-449 chr5 119374848 119375048 + -1.00380 NA Intergenic MLT1H|LTR|ERVL-MaLR -174930 NR_046033 665194 Mm.491047 NR_046033 ENSMUSG00000107334 Gm7538 EG665194 predicted gene 7538 ncRNA 0.005000 0.388060 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-436 chr5 71164059 71164259 + -1.00380 NA Intergenic Intergenic -68310 NM_008066 14395 Mm.5304 NM_008066 ENSMUSG00000000560 Gabra2 C630048P16Rik|Gabra-2 gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2 protein-coding 0.015000 0.442786 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-235 chr16 75877247 75877447 + -1.00380 NA intron (NM_023380, intron 4 of 7) intron (NM_023380, intron 4 of 7) 31919 NM_023380 67742 Mm.131406 NM_023380 ENSMUSG00000022876 Samsn1 4930571B16Rik|930571B16Rik|Hacs1|SLy2 SAM domain, SH3 domain and nuclear localization signals, 1 protein-coding 0.010000 0.492537 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-98 chr11 49224818 49225018 + -1.00380 NA Intergenic Intergenic -19273 NM_001110148 17308 Mm.196933 NM_010794 ENSMUSG00000020346 Mgat1 Mgat-1 mannoside acetylglucosaminyltransferase 1 protein-coding 0.005000 0.323383 -100(TGTTTTTCTTTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2600 chr4 68838594 68838794 + -1.00637 NA intron (NM_019967, intron 3 of 7) intron (NM_019967, intron 3 of 7) 115703 NM_019967 56710 Mm.248788 NM_019967 ENSMUSG00000028351 Brinp1 BRINP|Dbc1|Dbccr1|Fam5a bone morphogenic protein/retinoic acid inducible neural specific 1 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-850 chr12 95703844 95704044 + -1.00637 NA intron (NM_201518, intron 1 of 1) intron (NM_201518, intron 1 of 1) 11718 NM_201518 399558 Mm.341948 NM_201518 ENSMUSG00000047414 Flrt2 - fibronectin leucine rich transmembrane protein 2 protein-coding 0.005000 0.487562 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-96 chr11 44975188 44975388 + -1.00637 NA intron (NM_001362579, intron 12 of 16) intron (NM_001362579, intron 12 of 16) 141640 NR_045100 100504255 Mm.123608 NR_045100 ENSMUSG00000084773 Gm12159 - predicted gene 12159 ncRNA 0.005000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-215 chr1 123635839 123636039 + -1.00637 NA intron (NM_199021, intron 5 of 25) intron (NM_199021, intron 5 of 25) 409620 NM_199021 269109 Mm.417716 NM_199021 ENSMUSG00000036815 Dpp10 6430601K09Rik|DPP X|Dprp3 dipeptidylpeptidase 10 protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2838 chr5 91014546 91014746 + -1.00637 NA intron (NM_026788, intron 7 of 7) intron (NM_026788, intron 7 of 7) -12871 NM_053087 71920 Mm.197319 NM_053087 ENSMUSG00000035020 Epgn 2310069M11Rik|epigen epithelial mitogen protein-coding 0.015000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2733 chr5 15916286 15916486 + -1.00637 NA Intergenic Intergenic -18305 NM_001110845 12293 Mm.159842 NM_009784 ENSMUSG00000040118 Cacna2d1 Ca(v)alpha2delta1|Cacna2|Cchl2a calcium channel, voltage-dependent, alpha2/delta subunit 1 protein-coding 0.005000 0.338308 -84(TCATTGTTGTGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3109 chr7 49275704 49275904 + -1.00637 NA intron (NM_175272, intron 1 of 37) MIRb|SINE|MIR 29615 NM_175272 78286 Mm.333881 NM_175272 ENSMUSG00000052512 Nav2 5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015 neuron navigator 2 protein-coding 0.005000 0.472637 -90(AATGCTTAATACATC,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-490 chr7 49275698 49275898 + -1.00637 NA intron (NM_175272, intron 1 of 37) MIRb|SINE|MIR 29609 NM_175272 78286 Mm.333881 NM_175272 ENSMUSG00000052512 Nav2 5330421F07Rik|AU067780|BQ960892|HELAD1|POMFIL2|RAINB1|RAINB2|Unc53H2|mKIAA3015 neuron navigator 2 protein-coding 0.010000 0.472637 -84(AATGCTTAATACATC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3503 chr9 26805226 26805426 + -1.00666 NA intron (NM_153803, intron 1 of 19) intron (NM_153803, intron 1 of 19) 1142 NM_001310768 244757 Mm.293696 NM_153803 ENSMUSG00000036395 Glb1l2 - galactosidase, beta 1-like 2 protein-coding 0.010000 0.388060 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-164 chr14 34720573 34720773 + -1.00777 NA intron (NM_001004436, intron 4 of 18) intron (NM_001004436, intron 4 of 18) 46745 NM_001301330 218914 Mm.27957 NM_001004436 ENSMUSG00000041408 Wapl A530089A20Rik|BC037674|DIF-2|FOE|Wapal WAPL cohesin release factor protein-coding 0.000000 0.268657 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-267 chr18 30413364 30413564 + -1.00777 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 140599 NM_181414 225326 Mm.194127 NM_181414 ENSMUSG00000033628 Pik3c3 5330434F23Rik|Vps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 0.005000 0.402985 -8(TGTGCATTTGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1891 chr19 40922699 40922899 + -1.00777 NA Intergenic Intergenic 28094 NM_028319 72672 Mm.313523 NM_028319 ENSMUSG00000049164 Zfp518a 2810401C22Rik|6330417C12Rik|AI426493|Zfp518|Znf518|Znf518a|mKIAA0335 zinc finger protein 518A protein-coding 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-134 chr1 76343807 76344007 + -1.00777 NA Intergenic Intergenic -145226 NR_038013 620079 Mm.378379 NR_038012 ENSMUSG00000100553 Gm17751 - predicted gene, 17751 ncRNA 0.010000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-570 chr9 103372382 103372582 + -1.00777 NA Intergenic Intergenic -6702 NM_175833 321022 Mm.261025 NM_175565 ENSMUSG00000032803 Cdv3 2510010F10Rik|C230084J24Rik|C79446|TPP36 carnitine deficiency-associated gene expressed in ventricle 3 protein-coding 0.005000 0.537313 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-298 chr2 4393414 4393614 + -1.00777 NA intron (NM_172475, intron 1 of 22) L1_Mur3|LINE|L1 -7462 NM_001177843 209630 Mm.37932 NM_172475 ENSMUSG00000026657 Frmd4a 2700017I06Rik|5330420J21|AI594879|C230040M21Rik|Frmd4|Gm13190|mKIAA1294 FERM domain containing 4A protein-coding 0.015000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-744 chr12 24590442 24590642 + -1.00803 NA intron (NM_145890, intron 6 of 13) intron (NM_145890, intron 6 of 13) 9823 NM_145890 195733 Mm.263068 NM_145890 ENSMUSG00000020656 Grhl1 LBP-32|MGR|Tcfcp2l2 grainyhead like transcription factor 1 protein-coding 0.020000 0.477612 -100(TTTCTGTCATGGAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3302 chr8 27551513 27551713 + -1.00803 NA Intergenic Intergenic 103943 NM_026256 70952 Mm.158160 NM_026256 ENSMUSG00000063932 Poteg 4921537P18Rik|4930456F22Rik|Gsarp1|Gsarp2 POTE ankyrin domain family, member G protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-972 chr13 63879088 63879288 + -1.00803 NA intron (NM_001013608, intron 17 of 18) intron (NM_001013608, intron 17 of 18) 63948 NM_023507 76251 Mm.186610 NM_023507 ENSMUSG00000021470 Ercc6l2 0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278 excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2941 chr6 25255925 25256125 + -1.00885 NA Intergenic Intergenic -299900 NM_177013 319832 Mm.127446 NM_177013 ENSMUSG00000048022 Tmem229a 6332401O19Rik transmembrane protein 229A protein-coding 0.005000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-465 chr6 25255927 25256127 + -1.00885 NA Intergenic Intergenic -299902 NM_177013 319832 Mm.127446 NM_177013 ENSMUSG00000048022 Tmem229a 6332401O19Rik transmembrane protein 229A protein-coding 0.005000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-376 chr3 115242975 115243175 + -1.00885 NA Intergenic Lx8|LINE|L1 162110 NM_153157 229759 Mm.54183 NM_153157 ENSMUSG00000027965 Olfm3 B230206G02Rik olfactomedin 3 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1413 chr16 11247011 11247211 + -1.00885 NA intron (NM_146066, intron 1 of 14) intron (NM_146066, intron 1 of 14) 7214 NM_146066 14852 Mm.325827 NM_146066 ENSMUSG00000062203 Gspt1 AI314175|AI326449|AV307676|C79774|G1st|Gst-1 G1 to S phase transition 1 protein-coding 0.000000 0.303483 8(TATGAATATACAAA,-,0.00) -56(TCTTTCCCATTGAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2391 chr3 115243004 115243204 + -1.00885 NA Intergenic Lx8|LINE|L1 162139 NM_153157 229759 Mm.54183 NM_153157 ENSMUSG00000027965 Olfm3 B230206G02Rik olfactomedin 3 protein-coding 0.000000 0.393035 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-455 chr5 149514156 149514356 + -1.00997 NA intron (NR_045423, intron 1 of 4) intron (NR_045423, intron 1 of 4) -14423 NM_029440 381693 Mm.136919 NM_029440 ENSMUSG00000029658 Wdr95 4930434E21Rik WD40 repeat domain 95 protein-coding 0.030000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3156 chr7 80702587 80702787 + -1.01077 NA Intergenic Intergenic -13810 NM_173863 70461 Mm.392175 NM_173863 ENSMUSG00000030527 Crtc3 2610312F20Rik|6332415K15Rik|AI429792|BC011210|TORC3 CREB regulated transcription coactivator 3 protein-coding 0.020000 0.552239 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2494 chr3 152707400 152707600 + -1.01077 NA Intergenic Intergenic -6600 NM_178016 329777 Mm.331447 NM_025662 ENSMUSG00000039047 Pigk 3000001O05Rik|Gm38470|PIG-K phosphatidylinositol glycan anchor biosynthesis, class K protein-coding 0.005000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-77 chr1 52652608 52652808 + -1.01077 NA TTS (NM_001142647) TTS (NM_001142647) 22003 NR_024590 227094 Mm.83541 NM_172654 ENSMUSG00000043015 Nemp2 5330401P04Rik|9830163O08|Tmem194b nuclear envelope integral membrane protein 2 protein-coding 0.005000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2701 chr4 139716543 139716743 + -1.01077 NA Intergenic Intergenic 63105 NM_031873 83770 Mm.190612 NM_031873 ENSMUSG00000028738 Tas1r2 Gpr71|T1r2|TR2 taste receptor, type 1, member 2 protein-coding 0.025000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1354 chr15 76440316 76440516 + -1.01077 NA TTS (NM_001162489) TTS (NM_001162489) 7202 NR_105919 102465576 NR_105919 ENSMUSG00000099260 Mir6954 Gm27770|mmu-mir-6954 microRNA 6954 ncRNA 0.010000 0.492537 -21(TGTGCATATGTATG,-,0.00),-9(TGTGTATATGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2781 chr5 52351728 52351928 + -1.01077 NA Intergenic Intergenic -11976 NM_011435 20657 Mm.2407 NM_011435 ENSMUSG00000072941 Sod3 AI314465|EC-SOD superoxide dismutase 3, extracellular protein-coding 0.010000 0.417910 66(CTATTTTCATGCAGAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3375 chr8 76208782 76208982 + -1.01077 NA Intergenic Intergenic 691739 NR_028579 102640923 Mm.367571 NR_028579 ENSMUSG00000074235 Gm10649 - predicted gene 10649 ncRNA 0.005000 0.383085 64(GTTTGCATCACAATCA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2982 chr6 59244887 59245087 + -1.01077 NA Intergenic Lx9|LINE|L1 36117 NM_001081145 68140 Mm.25843 NM_001081145 ENSMUSG00000049232 Tigd2 3632410O17Rik tigger transposable element derived 2 protein-coding 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1596 chr17 34572003 34572203 + -1.01077 NA intron (NM_010929, intron 9 of 29) B2_Mm2|SINE|B2 7808 NM_010929 18132 Mm.173813 NM_010929 ENSMUSG00000015468 Notch4 Int-3|Int3|N4 notch 4 protein-coding 0.020000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3401 chr8 88873462 88873662 + -1.01077 NA Intergenic Intergenic -151173 NR_106190 102465899 NR_106190 ENSMUSG00000099078 Mir8110 Gm27571|mmu-mir-8110 microRNA 8110 ncRNA 0.015000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1464 chr16 47007212 47007412 + -1.01077 NA Intergenic Intergenic -510345 NM_021496 58998 Mm.40477 NM_021495 ENSMUSG00000022656 Nectin3 2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3 nectin cell adhesion molecule 3 protein-coding 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2434 chr3 126975692 126975892 + -1.01077 NA intron (NM_001327939, intron 26 of 45) intron (NM_001327939, intron 26 of 45) 22660 NM_178655 109676 Mm.220242 NM_178655 ENSMUSG00000032826 Ank2 100043364|AI835472|AW491075|Ank-2|Gm4392 ankyrin 2, brain protein-coding 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2624 chr4 83316865 83317065 + -1.01077 NA intron (NM_027238, intron 1 of 19) intron (NM_027238, intron 1 of 19) 7224 NM_027238 69863 Mm.5540 NM_025782 ENSMUSG00000038172 Ttc39b 1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585 tetratricopeptide repeat domain 39B protein-coding 0.010000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2530 chr4 22343037 22343237 + -1.01077 NA Intergenic Intergenic -14406 NR_104380 269514 Mm.40708 NM_172988 ENSMUSG00000040410 Fbxl4 AI836810|FBL4|FBL5 F-box and leucine-rich repeat protein 4 protein-coding 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-970 chr13 59041504 59041704 + -1.01077 NA intron (NM_001025074, intron 14 of 17) intron (NM_001025074, intron 14 of 17) 233907 NM_001025074 18212 Mm.130054 NM_008745 ENSMUSG00000055254 Ntrk2 GP145-TrkB/GP95-TrkB|Tkrb|trk-B|trkB neurotrophic tyrosine kinase, receptor, type 2 protein-coding 0.025000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1589 chr17 29401770 29401970 + -1.01077 NA Intergenic Intergenic 40956 NM_013710 26382 Mm.279187 NM_013710 ENSMUSG00000024013 Fgd2 Tcd-2|Tcd2|ZFYVE4|tcs-2|tcs2 FYVE, RhoGEF and PH domain containing 2 protein-coding 0.030000 0.592040 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-549 chr11 7995522 7995722 + -1.01077 NA Intergenic Intergenic 668913 NM_001083587 319939 Mm.337820 NM_001083587 ENSMUSG00000020422 Tns3 BC023928|F830010I22Rik|TEM6|Tens1 tensin 3 protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3469 chr8 127959813 127960013 + -1.01077 NA Intergenic Intergenic 318312 NR_105822 102465212 NR_105822 ENSMUSG00000099326 Mir21c Gm28013|mmu-mir-21c microRNA 21c ncRNA 0.000000 0.467662 -52(CCTGCATATTCAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3342 chr8 49934796 49934996 + -1.01077 NA Intergenic Intergenic -433216 NR_046067 100039954 Mm.400419 NR_046067 ENSMUSG00000110281 Gm2516 - predicted gene 2516 ncRNA 0.010000 0.343284 -60(TCTGCATAAGCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2084 chr2 108577056 108577256 + -1.01077 NA Intergenic Intergenic 701134 NM_029790 76894 Mm.330451 NM_029790 ENSMUSG00000057234 Mettl15 0610027B03Rik|AI303697|AW049952|Mett5d1 methyltransferase like 15 protein-coding 0.000000 0.278607 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-334 chr10 7278778 7278978 + -1.01077 NA Intergenic Intergenic -66641 NM_172546 215748 Mm.37984 NM_172546 ENSMUSG00000015202 Cnksr3 6820402C05|BC024086|Magi1 Cnksr family member 3 protein-coding 0.010000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1648 chr17 79296164 79296364 + -1.01077 NA Intergenic Intergenic 58827 NM_026514 260409 Mm.140601 NM_026514 ENSMUSG00000036533 Cdc42ep3 3200001F04Rik|AA986861|Borg2|Cep3|UB1 CDC42 effector protein (Rho GTPase binding) 3 protein-coding 0.005000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2014 chr2 55690537 55690737 + -1.01077 NA Intergenic Lx2|LINE|L1 254667 NM_008426 16519 Mm.5127 NM_008426 ENSMUSG00000026824 Kcnj3 GIRK-1|GIRK1|Kcnf3|Kir3.1 potassium inwardly-rectifying channel, subfamily J, member 3 protein-coding 0.010000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1936 chr2 8170742 8170942 + -1.01077 NA Intergenic RLTR26C_MM|LTR|ERVK -774644 NM_001110231 14007 Mm.398543 NM_010160 ENSMUSG00000002107 Celf2 B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3 CUGBP, Elav-like family member 2 protein-coding 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2261 chr3 52014288 52014488 + -1.01077 NA intron (NM_001004176, intron 1 of 4) RMER1B|Other|Other 90618 NM_001004176 433586 Mm.234972 NM_001004176 ENSMUSG00000061143 Maml3 AV234550|BC049812|Mam-2|mKIAA1816 mastermind like transcriptional coactivator 3 protein-coding 0.010000 0.442786 -55(ATTTGCAAGTGAAGGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3637 chr9 105376596 105376796 + -1.01077 NA intron (NM_172461, intron 2 of 15) intron (NM_172461, intron 2 of 15) 18591 NM_172461 208583 Mm.347509 NM_172461 ENSMUSG00000035032 Nek11 4932416N14Rik NIMA (never in mitosis gene a)-related expressed kinase 11 protein-coding 0.015000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-633 chr11 61985351 61985551 + -1.01077 NA intron (NM_001310526, intron 1 of 7) intron (NM_001310526, intron 1 of 7) 28688 NM_001281818 432572 Mm.438022 NM_001029936 ENSMUSG00000042331 Specc1 2810012G08Rik|B230396K10Rik|Cytsb sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 0.010000 0.412935 21(CATTAATATGCACA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2035 chr2 70787803 70788003 + -1.01077 NA intron (NR_156421, intron 1 of 6) RMER6C|LTR|ERVK 36901 NM_001362963 228012 Mm.136511 NM_172664 ENSMUSG00000041997 Tlk1 4930545J15Rik tousled-like kinase 1 protein-coding 0.000000 0.437811 48(CTCAGAAAGAGAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-150 chr1 83535198 83535398 + -1.01077 NA Intergenic Intergenic -127098 NM_001356547 77629 Mm.154303 NM_172430 ENSMUSG00000026163 Sphkap 4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678 SPHK1 interactor, AKAP domain containing protein-coding 0.000000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1442 chr16 29413473 29413673 + -1.01077 NA intron (NM_172613, intron 25 of 29) intron (NM_172613, intron 25 of 29) -34841 NM_175650 268878 Mm.9823 NM_175650 ENSMUSG00000048939 Atp13a5 C630015F21Rik ATPase type 13A5 protein-coding 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3712 chrX 73743601 73743801 + -1.01077 NA Intergenic Intergenic -13402 NM_019587 140571 Mm.275600 NM_019587 ENSMUSG00000031385 Plxnb3 AI451018|Plxn6 plexin B3 protein-coding 0.005000 0.318408 -82(ATATTCTCTTTTATAT,+,0.00),-38(TATTTATCATGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-597 chr11 38128932 38129132 + -1.01077 NA Intergenic Intergenic 391013 NR_040295 100502917 Mm.61144 NR_040295 Gm12130 - predicted gene 12130 ncRNA 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3610 chr9 92186160 92186360 + -1.01077 NA Intergenic MTD|LTR|ERVL-MaLR -6833 NM_001195693 100504689 NM_001195693 ENSMUSG00000095654 Plscr5 331000 phospholipid scramblase family, member 5 protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-886 chr13 6997906 6998106 + -1.01077 NA Intergenic Intergenic -349235 NM_019703 56421 Mm.273874 NM_019703 ENSMUSG00000021196 Pfkp 1200015H23Rik|9330125N24Rik|ATP-PFK|PFK-C|PFK-P phosphofructokinase, platelet protein-coding 0.005000 0.373134 -25(ATTAAAATAAAAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2001 chr2 49574260 49574460 + -1.01077 NA Intergenic Intergenic -44926 NM_008449 16574 Mm.256342 NM_008449 ENSMUSG00000026764 Kif5c KINN|Khc|NKHC|NKHC2 kinesin family member 5C protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3217 chr7 119692173 119692373 + -1.01077 NA intron (NM_178414, intron 1 of 13) intron (NM_178414, intron 1 of 13) 2247 NM_178414 233801 Mm.240412 NM_178414 ENSMUSG00000047026 Acsm4 O-MACS|OMACS acyl-CoA synthetase medium-chain family member 4 protein-coding 0.010000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3400 chr8 87132079 87132279 + -1.01077 NA Intergenic Intergenic 67671 NR_040697 100038706 Mm.334690 NR_040697 ENSMUSG00000099207 Gm10637 - predicted gene 10637 ncRNA 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-722 chr12 5326228 5326428 + -1.01077 NA intron (NM_001164493, intron 1 of 13) intron (NM_001164493, intron 1 of 13) 49354 NM_001164493 208439 Mm.388281 NM_001164493 ENSMUSG00000020627 Klhl29 A230106N14Rik|Gm68|Kbtbd9|mKIAA1921 kelch-like 29 protein-coding 0.015000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-715 chr11 118490897 118491097 + -1.01077 NA 3' UTR (NM_001285436, exon 14 of 14) 3' UTR (NM_001285436, exon 14 of 14) 14165 NR_153103 217364 Mm.473963 NM_172573 ENSMUSG00000033857 Engase C130099A03|D230014K01Rik endo-beta-N-acetylglucosaminidase protein-coding 0.065000 0.666667 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-735 chr12 14302567 14302767 + -1.01077 NA Intergenic MER119|DNA|hAT-Charlie 41133 NR_045003 791361 Mm.217963 NR_045003 ENSMUSG00000113336 Gm16497 - predicted gene 16497 ncRNA 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1396 chr15 99302077 99302277 + -1.01077 NA intron (NM_001370635, intron 1 of 25) intron (NM_001370635, intron 1 of 25) -1107 NM_001348256 54614 Mm.358668 NM_018786 ENSMUSG00000023007 Prpf40b 2610317D23Rik|Hypc pre-mRNA processing factor 40B protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-930 chr13 30281003 30281203 + -1.01077 NA Intergenic L1_Mur3|LINE|L1 -55253 NM_177322 11607 Mm.35062 NM_177322 ENSMUSG00000049115 Agtr1a 1810074K20Rik|AG2S|AI551199|AT1|AT1a|AT2R1|AT2R1A|Agt1ar|Agtr-1a|Agtr1|Angtr-1a angiotensin II receptor, type 1a protein-coding 0.005000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-546 chr11 6787677 6787877 + -1.01077 NA Intergenic Intergenic -67740 NR_046025 626419 Mm.390334 NR_046025 ENSMUSG00000086808 Gm11981 - predicted gene 11981 ncRNA 0.000000 0.388060 27(ATAAACATGACAAAAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-63 chr1 44064739 44064939 + -1.01077 NA Intergenic Intergenic 37602 NM_001356297 75623 Mm.348017 NM_029368 ENSMUSG00000026049 Tex30 1700029F09Rik|3110030D08Rik testis expressed 30 protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-691 chr11 98948161 98948361 + -1.01077 NA intron (NM_001177302, intron 2 of 9) L1MB8|LINE|L1 8550 NM_001177303 19401 Mm.439744 NM_009024 ENSMUSG00000037992 Rara Nr1b1|RAR|RARalpha1 retinoic acid receptor, alpha protein-coding 0.040000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1185 chr14 95602748 95602948 + -1.01077 NA Intergenic L1_Mur2|LINE|L1 -278406 NM_001358241 66732 Mm.75060 NM_025733 ENSMUSG00000034689 Spertl 4921530L21Rik spermatid associated like protein-coding 0.000000 0.303483 39(CTTTCAATAACAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-389 chr10 34326560 34326760 + -1.01077 NA intron (NM_001347463, intron 5 of 10) intron (NM_001347463, intron 5 of 10) 29239 NM_030203 72480 Mm.21485 NM_030203 ENSMUSG00000039485 Tspyl4 2610102M01Rik|B230210I21Rik|D10Bwg0791e TSPY-like 4 protein-coding 0.010000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-315 chr1 189184329 189184529 + -1.01077 NA Intergenic Intergenic 158924 NM_001357119 16526 Mm.33304 NM_010607 ENSMUSG00000037624 Kcnk2 A430027H14Rik|AI848635|TREK-1 potassium channel, subfamily K, member 2 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-657 chr11 70495722 70495922 + -1.01077 NA Intergenic MT2A|LTR|ERVL -9452 NM_029360 75604 Mm.24400 NM_029360 ENSMUSG00000018919 Tm4sf5 2010003F10Rik|AI323987 transmembrane 4 superfamily member 5 protein-coding 0.030000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2912 chr5 146734206 146734406 + -1.01077 NA TTS (NM_011669) TTS (NM_011669) 60650 NM_011669 22217 Mm.167971 NM_011669 ENSMUSG00000029640 Usp12 Ubh1 ubiquitin specific peptidase 12 protein-coding 0.005000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-135 chr1 78167085 78167285 + -1.01077 NA intron (NM_001159520, intron 4 of 8) intron (NM_001159520, intron 4 of 8) 29951 NM_008781 18505 Mm.1371 NM_008781 ENSMUSG00000004872 Pax3 Pax-3|Sp|Splchl2|splotch paired box 3 protein-coding 0.005000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1663 chr17 88340184 88340384 + -1.01077 NA Intergenic Intergenic -100420 NM_001355743 14236 Mm.112824 NM_180974 ENSMUSG00000034998 Foxn2 3230402J05Rik|6030465J18Rik|Fkh19|Foxn1|HTLF forkhead box N2 protein-coding 0.040000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-240 chr1 142826167 142826367 + -1.01077 NA Intergenic L1_Mus3|LINE|L1 -814430 NM_020025 26878 Mm.285580 NM_020025 ENSMUSG00000033849 B3galt2 - UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 protein-coding 0.000000 0.338308 25(ATTTGAATTGGAATTG,-,0.00),35(GAATTGTGATGGAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-561 chr11 17891361 17891561 + -1.01077 NA Intergenic ORR1B1|LTR|ERVL-MaLR 62414 NM_001362970 68145 Mm.178684 NM_026576 ENSMUSG00000016984 Etaa1 5730466H23Rik|AA672646 Ewing tumor-associated antigen 1 protein-coding 0.000000 0.402985 -32(CTTTGCATGGGCAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2196 chr2 170720127 170720327 + -1.01077 NA Intergenic Intergenic -11580 NM_001163686 76829 Mm.41633 NM_029761 ENSMUSG00000027560 Dok5 2700055C10Rik docking protein 5 protein-coding 0.025000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2860 chr5 105849742 105849942 + -1.01077 NA Intergenic Intergenic -26726 NR_030777 54367 Mm.248876 NM_018759 ENSMUSG00000029290 Zfp326 5730470H14Rik|ZAN75|Znf326 zinc finger protein 326 protein-coding 0.010000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-67 chr1 46863524 46863724 + -1.01077 NA intron (NM_001356417, intron 2 of 10) intron (NM_001356417, intron 2 of 10) -10006 NM_172653 227059 Mm.233889 NM_172653 ENSMUSG00000025986 Slc39a10 2900042E17Rik|5430433I10|Zip10|mKIAA1265 solute carrier family 39 (zinc transporter), member 10 protein-coding 0.005000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-545 chr8 119304784 119304984 + -1.01124 NA intron (NM_019707, intron 11 of 13) intron (NM_019707, intron 11 of 13) -39654 NM_024219 68196 Mm.358714 NM_024219 ENSMUSG00000031839 Hsbp1 0610007A03Rik|AA408769|Hsp25 heat shock factor binding protein 1 protein-coding 0.015000 0.487562 -51(CCATTGTCAGGCAGAT,+,0.00) merged_common chr1 127167813 127168013 + -1.01124 NA Intergenic Intergenic -37073 NM_145128 107895 Mm.214682 NM_145128 ENSMUSG00000036155 Mgat5 4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV mannoside acetylglucosaminyltransferase 5 protein-coding 0.005000 0.467662 -41(CTTTACACAACAAATA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-483 chr6 109948796 109948996 + -1.01124 NA Intergenic Intergenic -696616 NM_001346640 108073 Mm.240881 NM_177328 ENSMUSG00000056755 Grm7 6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7 glutamate receptor, metabotropic 7 protein-coding 0.005000 0.378109 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-403 chr4 68838458 68838658 + -1.01124 NA intron (NM_019967, intron 3 of 7) MamTip3|DNA|hAT-Tip100 115839 NM_019967 56710 Mm.248788 NM_019967 ENSMUSG00000028351 Brinp1 BRINP|Dbc1|Dbccr1|Fam5a bone morphogenic protein/retinoic acid inducible neural specific 1 protein-coding 0.000000 0.348259 -22(CTTTTGTTATTTAATT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-234 chr16 75244467 75244667 + -1.01124 NA Intergenic Intergenic -151797 NM_001358493 268902 Mm.171736 NM_175549 ENSMUSG00000052516 Robo2 2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568 roundabout guidance receptor 2 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2789 chr5 59922007 59922207 + -1.01124 NA Intergenic RMER12B|LTR|ERVK 63895 NR_040683 71057 Mm.50817 NR_040682 ENSMUSG00000106013 4933402J10Rik - RIKEN cDNA 4933402J10 gene ncRNA 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-994 chr13 83502919 83503119 + -1.01124 NA Intergenic Intergenic -1015 NM_001347564 17260 Mm.24001 NM_025282 ENSMUSG00000005583 Mef2c 5430401D19Rik|9930028G15Rik|AV011172|Mef2 myocyte enhancer factor 2C protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3107 chr7 43299283 43299483 + -1.01135 NA exon (NM_027264, exon 5 of 5) exon (NM_027264, exon 5 of 5) 13917 NM_001357811 69930 Mm.45367 NM_027264 ENSMUSG00000012640 Zfp715 2610041B18Rik|mszf15 zinc finger protein 715 protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-556 chr11 16559370 16559570 + -1.01135 NA Intergenic Intergenic -50986 NM_001109971 20335 Mm.325350 NM_011343 ENSMUSG00000078974 Sec61g - SEC61, gamma subunit protein-coding 0.025000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-85 chr1 54443756 54443956 + -1.01135 NA Intergenic Intergenic -4830 NM_001033194 98488 Mm.25856 NM_001033194 ENSMUSG00000041303 Gtf3c3 TF3C-gamma|TFIIIC102 general transcription factor IIIC, polypeptide 3 protein-coding 0.025000 0.462687 42(CTCTGCATGAAAAAGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1078 chr14 21229406 21229606 + -1.01135 NA intron (NM_134079, intron 4 of 10) intron (NM_134079, intron 4 of 10) 153354 NM_001243041 11534 Mm.188734 NM_134079 ENSMUSG00000039197 Adk 2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak adenosine kinase protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-707 chr11 110605266 110605466 + -1.01135 NA Intergenic Intergenic 126026 NM_001356346 26399 Mm.14487 NM_011943 ENSMUSG00000020623 Map2k6 MAPKK 6|MAPKK6|MEK6|MKK6|Prkmk6|SAPKK3 mitogen-activated protein kinase kinase 6 protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-869 chr12 107693780 107693980 + -1.01135 NA Intergenic Intergenic 41608 NR_045973 74968 Mm.359821 NR_045973 ENSMUSG00000085641 4930465M20Rik 4930431H15Rik RIKEN cDNA 4930465M20 gene ncRNA 0.020000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3745 chrX 138465035 138465235 + -1.01135 NA intron (NM_030688, intron 5 of 10) intron (NM_030688, intron 5 of 10) -255555 NM_026469 67944 Mm.443280 NM_026469 ENSMUSG00000071686 Tex13a 1700025D03Rik testis expressed 13A protein-coding 0.005000 0.378109 11(CTAGTCTCATGCAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-616 chr11 49860438 49860638 + -1.01135 NA intron (NM_207692, intron 2 of 11) intron (NM_207692, intron 2 of 11) 13787 NM_001163672 26420 Mm.68933 NM_016961 ENSMUSG00000020366 Mapk9 AI851083|JNK2|Prkm9|p54aSAPK mitogen-activated protein kinase 9 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2713 chr5 4903184 4903384 + -1.01135 NA intron (NM_011074, intron 12 of 14) intron (NM_011074, intron 12 of 14) -145068 NM_021457 14362 Mm.246003 NM_021457 ENSMUSG00000044674 Fzd1 AW227548|FZ-1|Fz1 frizzled class receptor 1 protein-coding 0.015000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1195 chr14 102064894 102065094 + -1.01135 NA Intergenic Intergenic 224371 NM_001347628 380928 Mm.218981 NM_201529 ENSMUSG00000033060 Lmo7 C78582|FBXO20|Gm914|mKIAA0858 LIM domain only 7 protein-coding 0.015000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2443 chr3 132022125 132022325 + -1.01135 NA Intergenic Intergenic -63067 NM_020265 56811 Mm.103593 NM_020265 ENSMUSG00000028031 Dkk2 - dickkopf WNT signaling pathway inhibitor 2 protein-coding 0.020000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3101 chr7 31063208 31063408 + -1.01135 NA exon (NM_144556, exon 5 of 9) exon (NM_144556, exon 5 of 9) 3373 NM_144556 243914 Mm.389870 NM_144556 ENSMUSG00000036560 Lgi4 Lgil3|clp leucine-rich repeat LGI family, member 4 protein-coding 0.025000 0.592040 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3664 chr9 122036765 122036965 + -1.01135 NA Intergenic Intergenic -40839 NM_001289558 215494 Mm.402151 NM_153540 ENSMUSG00000066235 Pomgnt2 Ago61|C85492|Gtdc2 protein O-linked mannose beta 1,4-N-acetylglucosaminyltransferase 2 protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1756 chr18 48428706 48428906 + -1.01135 NA Intergenic Lx8|LINE|L1 383471 NM_001025388 433182 Mm.70666 NM_001025388 ENSMUSG00000059040 Eno1b EG433182|Eno-1|Eno1|Gm5506|NNE enolase 1B, retrotransposed protein-coding 0.000000 0.363184 -49(CTATTGTGTTGCTAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-938 chr13 34762145 34762345 + -1.01135 NA Intergenic MLT1F|LTR|ERVL-MaLR 22603 NM_138746 108161 Mm.41991 NM_138746 ENSMUSG00000038246 Fam50b D0H6S2654E|X5L|XAP-5-like family with sequence similarity 50, member B protein-coding 0.005000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3093 chr7 4112850 4113050 + -1.01135 NA intron (NR_033568, intron 2 of 8) Lx2A1|LINE|L1 -6580 NM_001305822 57776 Mm.29729 NM_021324 ENSMUSG00000030428 Ttyh1 4930459B04Rik|6330408P11Rik|TTY1|mTTY1|tty tweety family member 1 protein-coding 0.010000 0.482587 -47(ATTTACATCTCAAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2166 chr2 148538121 148538321 + -1.01135 NA Intergenic Intergenic -94686 NM_010740 17064 Mm.681 NM_010740 ENSMUSG00000027435 Cd93 6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68 CD93 antigen protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1143 chr14 68972220 68972420 + -1.01135 NA Intergenic RLTR18|LTR|ERVK -56969 NM_009285 20855 Mm.20911 NM_009285 ENSMUSG00000014813 Stc1 Stc stanniocalcin 1 protein-coding 0.015000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-382 chr10 32602837 32603037 + -1.01135 NA intron (NM_001013411, intron 1 of 6) intron (NM_001013411, intron 1 of 6) 286978 NM_001025286 432450 Mm.49665 NM_001013411 ENSMUSG00000069670 Nkain2 6330571D19Rik|AW455467|Tcba1 Na+/K+ transporting ATPase interacting 2 protein-coding 0.015000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1327 chr15 54600836 54601036 + -1.01135 NA 3' UTR (NM_178920, exon 4 of 4) 3' UTR (NM_178920, exon 4 of 4) 29570 NM_178920 105853 Mm.410994 NM_178920 ENSMUSG00000024479 Mal2 AI461653 mal, T cell differentiation protein 2 protein-coding 0.005000 0.328358 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-260 chr17 79296094 79296294 + -1.01135 NA Intergenic Intergenic 58897 NM_026514 260409 Mm.140601 NM_026514 ENSMUSG00000036533 Cdc42ep3 3200001F04Rik|AA986861|Borg2|Cep3|UB1 CDC42 effector protein (Rho GTPase binding) 3 protein-coding 0.005000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-904 chr13 16340079 16340279 + -1.01135 NA Intergenic Intergenic -316756 NR_155430 100503142 Mm.359204 NR_155430 B230303A05Rik B230303A05|EG328191 U1 small nuclear ribonucleoprotein 1C pseudogene pseudo 0.010000 0.378109 22(TTTTATATGACAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2533 chr4 25388427 25388627 + -1.01135 NA Intergenic Intergenic -106706 NM_026194 67490 Mm.226295 NM_026194 ENSMUSG00000040359 Ufl1 1810074P20Rik|AI429228|Kiaa0776|Maxer|Rcad|mKIAA0776 UFM1 specific ligase 1 protein-coding 0.005000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2022 chr2 60613800 60614000 + -1.01135 NA intron (NM_001159564, intron 15 of 17) intron (NM_001159564, intron 15 of 17) 59793 NM_021359 16420 Mm.98193 NM_021359 ENSMUSG00000026971 Itgb6 2210409C20Rik|4831415H04Rik integrin beta 6 protein-coding 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2267 chr3 53415996 53416196 + -1.01135 NA Intergenic Intergenic 47162 NM_172501 212114 Mm.85744 NM_172501 ENSMUSG00000042997 Nhlrc3 4833441N19|8030451K01Rik|mKIAA4083 NHL repeat containing 3 protein-coding 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3520 chr9 35523624 35523824 + -1.01135 NA Intergenic Intergenic 34746 NM_013932 30959 Mm.291723 NM_013932 ENSMUSG00000032101 Ddx25 AW047046|GRTH DEAD (Asp-Glu-Ala-Asp) box polypeptide 25 protein-coding 0.020000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2255 chr3 47202757 47202957 + -1.01135 NA Intergenic Intergenic -302075 NR_105800 102465199 NR_105800 ENSMUSG00000098417 Mir6379 Gm27730|mmu-mir-6379 microRNA 6379 ncRNA 0.000000 0.283582 14(CATGTATTATTCATT,+,0.00),14(CATGTATTATTCATT,-,0.00) -73(AAATTATGATGCTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3376 chr8 76347570 76347770 + -1.01135 NA Intergenic Intergenic 552951 NR_028579 102640923 Mm.367571 NR_028579 ENSMUSG00000074235 Gm10649 - predicted gene 10649 ncRNA 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2752 chr5 29998441 29998641 + -1.01135 NA Intergenic ORR1C2|LTR|ERVL-MaLR -14573 NM_001314054 16193 Mm.1019 NM_031168 ENSMUSG00000025746 Il6 Il-6 interleukin 6 protein-coding 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-945 chr13 39440976 39441176 + -1.01135 NA Intergenic Intergenic -480197 NM_001170431 108652 Mm.255506 NM_134060 ENSMUSG00000021432 Slc35b3 4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2 solute carrier family 35, member B3 protein-coding 0.030000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2191 chr2 167951179 167951379 + -1.01135 NA intron (NM_011201, intron 1 of 8) intron (NM_011201, intron 1 of 8) 18952 NM_011201 19246 Mm.277916 NM_011201 ENSMUSG00000027540 Ptpn1 PTP-1B|PTP-HA2|PTP1B protein tyrosine phosphatase, non-receptor type 1 protein-coding 0.015000 0.527363 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-580 chrX 103288872 103289072 + -1.01135 NA Intergenic Intergenic -32358 NM_001358270 75106 Mm.1441 NM_029170 4930519F16Rik Ppnx RIKEN cDNA 4930519F16 gene protein-coding 0.020000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-986 chr13 78103330 78103530 + -1.01135 NA intron (NM_001163419, intron 9 of 9) intron (NM_001163419, intron 9 of 9) 78528 NM_029315 75507 Mm.443255 NM_029315 ENSMUSG00000093668 Pou5f2 1700013G10Rik|SPRM-1|Sprm1 POU domain class 5, transcription factor 2 protein-coding 0.000000 0.378109 30(ATTTAGAAAACAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-683 chr11 95093225 95093425 + -1.01135 NA Intergenic RMER1A|Other|Other -16514 NM_001306162 16400 Mm.57035 NM_013565 ENSMUSG00000001507 Itga3 AA407068|CD49C|GAPB3 integrin alpha 3 protein-coding 0.020000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2642 chr4 94433383 94433583 + -1.01135 NA Intergenic Intergenic 123313 NM_026368 67770 Mm.35170 NM_026368 ENSMUSG00000028578 Caap1 5830433M19Rik|AI536248|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 0.005000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-482 chr10 93648668 93648868 + -1.01135 NA intron (NM_021320, intron 2 of 9) intron (NM_021320, intron 2 of 9) 7719 NM_021320 57764 Mm.483868 NM_021320 ENSMUSG00000020019 Ntn4 - netrin 4 protein-coding 0.010000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2176 chr2 155914147 155914347 + -1.01135 NA intron (NM_001355441, intron 2 of 9) intron (NM_001355441, intron 2 of 9) 16063 NM_001355441 56046 Mm.158827 NM_018888 ENSMUSG00000005882 Uqcc1 2310079L17Rik|2410003P15Rik|3110038N19Rik|Bfzb|Bfzp|Cbp3|Uqcc ubiquinol-cytochrome c reductase complex assembly factor 1 protein-coding 0.015000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3069 chr6 125359920 125360120 + -1.01135 NA intron (NM_011609, intron 5 of 9) B3|SINE|B2 10297 NM_011609 21937 Mm.1258 NM_011609 ENSMUSG00000030341 Tnfrsf1a CD120a|FPF|TNF-R|TNF-R-I|TNF-R1|TNF-R55|TNF-alphaR1|TNFAR|TNFR60|TNFRI|TNFRp55|TNFalpha-R1|Tnfr-2|Tnfr1|p55|p55-R tumor necrosis factor receptor superfamily, member 1a protein-coding 0.010000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1580 chr17 12259893 12260093 + -1.01135 NA intron (NM_001357722, intron 6 of 25) intron (NM_001357722, intron 6 of 25) 58667 NM_011948 26407 Mm.28587 NM_011948 ENSMUSG00000014426 Map3k4 D17Rp17|D17Rp17e|MAPKKK4|MEKK 4|MTK1|Mek4b|Mekk4|RP17|Rp17a|Tas|mKIAA0213 mitogen-activated protein kinase kinase kinase 4 protein-coding 0.020000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3186 chr7 96852778 96852978 + -1.01135 NA intron (NM_001310762, intron 24 of 32) intron (NM_001310762, intron 24 of 32) -51329 NR_045874 791381 Mm.402112 NR_045874 ENSMUSG00000053049 Gm15413 - predicted gene 15413 ncRNA 0.000000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-928 chr13 29281563 29281763 + -1.01135 NA intron (NR_131896, intron 15 of 16) intron (NR_131896, intron 15 of 16) 265408 NR_045074 77920 Mm.197051 NR_045073 ENSMUSG00000086363 A330102I10Rik - RIKEN cDNA A330102I10 gene ncRNA 0.015000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2590 chr4 62732936 62733136 + -1.01135 NA Intergenic Intergenic 59062 NM_001310706 50780 Mm.286753 NM_019492 ENSMUSG00000059810 Rgs3 4930506N09Rik|C2PA-RGS3|C2pa|PDZ-RGS3|RGS3S regulator of G-protein signaling 3 protein-coding 0.005000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2004 chr2 51033477 51033677 + -1.01135 NA Intergenic Intergenic 115534 NM_028810 74194 Mm.46497 NM_028810 ENSMUSG00000017144 Rnd3 2610017M01Rik|AI661404|Arhe|Rhoe Rho family GTPase 3 protein-coding 0.015000 0.487562 -92(CTTTTATTATGGAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2214 chr3 10727257 10727457 + -1.01135 NA Intergenic Intergenic -287227 NM_001127191 74718 Mm.440548 NM_029068 ENSMUSG00000027534 Snx16 4930522N22Rik|AI117577|AI747675 sorting nexin 16 protein-coding 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3291 chr8 22303003 22303203 + -1.01135 NA intron (NM_199257, intron 4 of 27) intron (NM_199257, intron 4 of 27) 19662 NM_199257 234129 Mm.450553 NM_181851 ENSMUSG00000031481 Tpte Pten2 transmembrane phosphatase with tensin homology protein-coding 0.010000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-110 chr1 68431279 68431479 + -1.01135 NA intron (NM_010154, intron 3 of 26) intron (NM_010154, intron 3 of 26) 676680 NM_010154 13869 Mm.442420 NM_010154 ENSMUSG00000062209 Erbb4 Her4|c-erbB-4 erb-b2 receptor tyrosine kinase 4 protein-coding 0.000000 0.238806 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2444 chr3 132938649 132938849 + -1.01135 NA intron (NM_001287101, intron 2 of 13) intron (NM_001287101, intron 2 of 13) 11065 NM_001287103 114249 Mm.279310 NM_033525 ENSMUSG00000040998 Npnt 1110009H02Rik|AA682063|AI314031|Nctn|POEM nephronectin protein-coding 0.020000 0.412935 75(GCTTTTTTTTTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1652 chr17 80825443 80825643 + -1.01135 NA Intergenic Intergenic -71250 NR_131127 320784 Mm.474182 NR_131127 ENSMUSG00000112121 C230072F16Rik - RIKEN cDNA C230072F16 gene ncRNA 0.025000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3590 chr9 83756641 83756841 + -1.01135 NA Intergenic Intergenic 49564 NM_148941 83603 Mm.83949 NM_148941 ENSMUSG00000032262 Elovl4 - elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4 protein-coding 0.015000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2203 chr2 180835918 180836118 + -1.01135 NA Intergenic Intergenic -58022 NR_029538 723951 NR_029538 ENSMUSG00000065454 Mir124a-3 Mirn124a-3|mir-124-3|mir-124a-3 microRNA 124a-3 ncRNA 0.000000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2720 chr5 9345019 9345219 + -1.01135 NA intron (NR_153370, intron 1 of 19) intron (NR_153370, intron 1 of 19) -30585 NR_030537 100124492 NR_030537 ENSMUSG00000077896 Mir879 Mirn879|mir-879|mmu-mir-879 microRNA 879 ncRNA 0.015000 0.407960 -96(TGATTATTATGCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1246 chr15 9725297 9725497 + -1.01135 NA intron (NM_177123, intron 3 of 17) intron (NM_177123, intron 3 of 17) 23471 NM_001305042 320277 Mm.127822 NM_177123 ENSMUSG00000072663 Spef2 C230086A09Rik sperm flagellar 2 protein-coding 0.015000 0.268657 10(ATTAGAAAGACAATCG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2080 chr2 107256532 107256732 + -1.01135 NA Intergenic Intergenic -33957 NM_021275 16492 Mm.142718 NM_021275 ENSMUSG00000042604 Kcna4 Kv1.4 potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding 0.015000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1064 chr14 12899606 12899806 + -1.01135 NA Intergenic Intergenic -76627 NM_001359919 27062 Mm.260881 NM_012061 ENSMUSG00000054423 Cadps AU067781|CAPS|CAPS1|mKIAA1121 Ca2+-dependent secretion activator protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3627 chr9 101109924 101110124 + -1.01225 NA intron (NM_001161362, intron 13 of 13) intron (NM_001161362, intron 13 of 13) 35262 NM_001100451 77853 Mm.326206 NM_001100451 ENSMUSG00000066415 Msl2 E130103E02Rik|Msl2l1|Rnf184 MSL complex subunit 2 protein-coding 0.000000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1649 chr17 79536968 79537168 + -1.01225 NA Intergenic Intergenic -26582 NR_033462 100038718 Mm.414347 NR_033462 Gm10494 - predicted gene 10494 ncRNA 0.020000 0.467662 -79(TCATTGTGATTCAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1290 chr15 34206240 34206440 + -1.01225 NA Intergenic Intergenic -31686 NM_033521 114128 Mm.197518 NM_033521 ENSMUSG00000022257 Laptm4b C330023P13Rik|LAPTM4beta lysosomal-associated protein transmembrane 4B protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3701 chrX 53152528 53152728 + -1.01225 NA intron (NM_001357802, intron 1 of 2) intron (NM_001357802, intron 1 of 2) -38223 NM_019538 56096 Mm.274842 NM_019538 ENSMUSG00000061082 Plac1 DXWsu72e|Epcs26|Oosp2l placental specific protein 1 protein-coding 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2755 chr5 33237991 33238191 + -1.01225 NA Intergenic Intergenic -19853 NM_133903 100689 Mm.34694 NM_133903 ENSMUSG00000037379 Spon2 2310045I24Rik|AI504350|M-spondin|Mindin|Mspondin spondin 2, extracellular matrix protein protein-coding 0.030000 0.651741 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2753 chr5 30617969 30618169 + -1.01225 NA intron (NM_010608, intron 1 of 1) intron (NM_010608, intron 1 of 1) -29450 NR_040427 100502829 Mm.39944 NR_040427 ENSMUSG00000053214 Gm9899 - predicted gene 9899 ncRNA 0.025000 0.601990 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3751 chrX 141820507 141820707 + -1.01225 NA Intergenic Intergenic -95390 NM_010572 16370 Mm.261591 NM_010572 ENSMUSG00000054667 Irs4 IRS-4 insulin receptor substrate 4 protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-841 chr12 92185954 92186154 + -1.01225 NA Intergenic Intergenic -336897 NM_011344 20338 Mm.250605 NM_011344 ENSMUSG00000020964 Sel1l AW493766|Sel1h|mKIAA4137 sel-1 suppressor of lin-12-like (C. elegans) protein-coding 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2904 chr5 142696411 142696611 + -1.01225 NA Intergenic B4A|SINE|B4 -5590 NM_146257 243328 Mm.125942 NM_146257 ENSMUSG00000050822 Slc29a4 ENT4|mPMAT solute carrier family 29 (nucleoside transporters), member 4 protein-coding 0.025000 0.582090 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2609 chr4 72574712 72574912 + -1.01225 NA Intergenic Intergenic 277822 NM_001199270 353204 Mm.317892 NM_001199270 ENSMUSG00000059343 Aldoart1 4921524E03Rik|Aldo1-ps|Aldo1-ps2|Aldoa-ps2 aldolase 1 A, retrogene 1 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-473 chr10 86414101 86414301 + -1.01225 NA intron (NM_001164495, intron 3 of 6) intron (NM_001164495, intron 3 of 6) 84695 NM_013722 27204 Mm.394931 NM_013722 ENSMUSG00000059602 Syn3 - synapsin III protein-coding 0.010000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3529 chr9 44836548 44836748 + -1.01225 NA exon (NM_001357549, exon 11 of 36) exon (NM_001357549, exon 11 of 36) -33697 NM_138951 192653 Mm.325487 NM_138951 ENSMUSG00000039438 Ttc36 - tetratricopeptide repeat domain 36 protein-coding 0.015000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1258 chr15 15948273 15948473 + -1.01225 NA Intergenic RMER20B|LTR|ERVK -780542 NM_009869 12565 Mm.439758 NM_009869 ENSMUSG00000025370 Cdh9 - cadherin 9 protein-coding 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-127 chr1 72006161 72006361 + -1.01225 NA Intergenic Intergenic -1066 NR_040454 71134 Mm.370574 NR_040454 ENSMUSG00000101848 4933417E11Rik - RIKEN cDNA 4933417E11 gene ncRNA 0.020000 0.407960 23(CATAAATTATGTATC,+,0.00),23(CATAAATTATGTATC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1124 chr14 60585907 60586107 + -1.01225 NA Intergenic Lx7|LINE|L1 -48698 NM_001033272 219140 Mm.149776 NM_001033272 ENSMUSG00000021990 Spata13 C79050|ESTM11|X83327|mFLJ00298 spermatogenesis associated 13 protein-coding 0.000000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2907 chr5 144647904 144648104 + -1.01225 NA Intergenic Intergenic 102117 NM_016789 53324 Mm.10099 NM_016789 ENSMUSG00000059991 Nptx2 Narp|np2 neuronal pentraxin 2 protein-coding 0.015000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3346 chr8 54216353 54216553 + -1.01225 NA Intergenic MLT1G|LTR|ERVL-MaLR 138921 NM_009506 22341 Mm.1402 NM_009506 ENSMUSG00000031520 Vegfc AW228853|VEGF-C vascular endothelial growth factor C protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-33 chr1 25685804 25686004 + -1.01225 NA intron (NM_175642, intron 2 of 30) intron (NM_175642, intron 2 of 30) 143803 NM_175642 210933 Mm.336569 NM_175642 ENSMUSG00000033569 Adgrb3 A830096D10Rik|Bai3 adhesion G protein-coupled receptor B3 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1749 chr18 45274453 45274653 + -1.01225 NA intron (NM_001312905, intron 1 of 10) intron (NM_001312905, intron 1 of 10) 5694 NM_001312905 140492 Mm.411614 NM_080465 ENSMUSG00000054477 Kcnn2 KCa2.2|SK2|SKCA2|bc|fri potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 protein-coding 0.010000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1964 chr2 22639666 22639866 + -1.01225 NA intron (NM_008078, intron 7 of 15) intron (NM_008078, intron 7 of 15) -14517 NR_039548 100628608 NR_039548 ENSMUSG00000106199 Mir3967 mmu-mir-3967|mu-mir-3967 microRNA 3967 ncRNA 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1455 chr16 37575500 37575700 + -1.01225 NA Intergenic L1MA5|LINE|L1 -4553 NM_013547 15233 Mm.157442 NM_013547 ENSMUSG00000022821 Hgd Hgo|aku homogentisate 1, 2-dioxygenase protein-coding 0.015000 0.348259 40(CCATTATTATGTATAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-194 chr1 111211710 111211910 + -1.01225 NA Intergenic Intergenic -234217 NM_001356415 227485 Mm.322070 NM_001081386 ENSMUSG00000047216 Cdh19 - cadherin 19, type 2 protein-coding 0.015000 0.373134 8(CTTTTCTTTTTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2334 chr3 82418288 82418488 + -1.01225 NA Intergenic Intergenic 60201 NM_001356457 213582 Mm.271269 NM_001081230 ENSMUSG00000033900 Map9 5033421J10Rik|5330427D05Rik|ASAP|Mtap9 microtubule-associated protein 9 protein-coding 0.005000 0.303483 45(CTTTTGTTATTGTGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2786 chr5 57396551 57396751 + -1.01225 NA Intergenic Intergenic 321268 NR_015588 319216 Mm.332387 NR_015588 ENSMUSG00000097216 4932441J04Rik - RIKEN cDNA 4932441J04 gene ncRNA 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-920 chr13 24792451 24792651 + -1.01225 NA Intergenic Intergenic -9106 NM_024473 79555 Mm.266668 NM_024473 ENSMUSG00000019132 BC005537 8030460C05Rik|C78201 cDNA sequence BC005537 protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3523 chr9 40766253 40766453 + -1.01225 NA intron (NM_133733, intron 2 of 6) intron (NM_133733, intron 2 of 6) -34923 NM_031165 15481 Mm.290774 NM_031165 ENSMUSG00000015656 Hspa8 2410008N15Rik|Hsc70|Hsc71|Hsc73|Hsp73|Hspa10 heat shock protein 8 protein-coding 0.010000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-495 chr10 102027615 102027815 + -1.01225 NA intron (NM_001205098, intron 3 of 7) intron (NM_001205098, intron 3 of 7) -131143 NM_001162368 67569 Mm.25252 NM_026243 ENSMUSG00000019888 Mgat4c 9130411I17Rik|GntIVh MGAT4 family, member C protein-coding 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3286 chr8 20557566 20557766 + -1.01225 NA Intergenic Intergenic -57261 NM_001270553 100861668 Mm.491087 NM_001270553 ENSMUSG00000095294 Gm21119 - predicted gene, 21119 protein-coding 0.065000 0.567164 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-610 chr11 45235707 45235907 + -1.01225 NA Intergenic Intergenic -118879 NR_045100 100504255 Mm.123608 NR_045100 ENSMUSG00000084773 Gm12159 - predicted gene 12159 ncRNA 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-417 chr10 54015070 54015270 + -1.01225 NA intron (NM_008548, intron 4 of 12) MIRb|SINE|MIR 60567 NM_008548 17155 Mm.117294 NM_008548 ENSMUSG00000003746 Man1a Man1a1|PCR1 mannosidase 1, alpha protein-coding 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-647 chr11 65724282 65724482 + -1.01225 NA intron (NM_001316368, intron 3 of 10) intron (NM_001316368, intron 3 of 10) 10450 NR_030417 791070 NR_030417 ENSMUSG00000076460 Mir744 Mirn744|mir-744|mmu-mir-744 microRNA 744 ncRNA 0.010000 0.457711 -41(GAATTCTCAAGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1848 chr19 18313180 18313380 + -1.01225 NA Intergenic Intergenic 318533 NM_017375 20409 Mm.172222 NM_017375 ENSMUSG00000024725 Ostf1 C78236|SH3P2|Sh3d3 osteoclast stimulating factor 1 protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-929 chr13 30075054 30075254 + -1.01225 NA Intergenic Intergenic -61336 NM_153546 218121 Mm.89682 NM_153546 ENSMUSG00000038732 Mboat1 9130215M02Rik|BC023845|LPEAT1|Moact1|Oact1 membrane bound O-acyltransferase domain containing 1 protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3770 chrX 163849471 163849671 + -1.01225 NA Intergenic Intergenic -59446 NM_026887 108012 Mm.426783 NM_026887 ENSMUSG00000031367 Ap1s2 1500012A13Rik|AI853648|EST1 adaptor-related protein complex 1, sigma 2 subunit protein-coding 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1779 chr18 59274441 59274641 + -1.01240 NA intron (NM_001081328, intron 2 of 2) intron (NM_001081328, intron 2 of 2) 99201 NM_001081328 78923 Mm.84007 NM_001081328 ENSMUSG00000058152 Chsy3 4833446K15Rik|AI662215 chondroitin sulfate synthase 3 protein-coding 0.010000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-395 chr10 36899074 36899274 + -1.01242 NA Intergenic Intergenic -75370 NM_008229 15182 Mm.19806 NM_008229 ENSMUSG00000019777 Hdac2 D10Wsu179e|YAF1|Yy1bp|mRPD3 histone deacetylase 2 protein-coding 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1643 chr17 75087444 75087644 + -1.01340 NA intron (NM_019919, intron 3 of 33) intron (NM_019919, intron 3 of 33) 82015 NM_019919 268977 Mm.269747 NM_019919 ENSMUSG00000001870 Ltbp1 9430031G15Rik|9830146M04|Ltbp-1|Ltbp1L|TGF-beta1-BP-1|Tgfb|b2b1000Clo latent transforming growth factor beta binding protein 1 protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1088 chr14 25756516 25756716 + -1.01340 NA intron (NM_001101433, intron 2 of 3) intron (NM_001101433, intron 2 of 3) 12456 NM_001101433 71918 Mm.41904 NM_001101433 ENSMUSG00000055538 Zcchc24 2310047A01Rik zinc finger, CCHC domain containing 24 protein-coding 0.005000 0.572139 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1062 chr14 12124220 12124420 + -1.01340 NA intron (NM_008981, intron 8 of 29) intron (NM_008981, intron 8 of 29) -65623 NM_001347593 19270 Mm.431266 NM_008981 ENSMUSG00000021745 Ptprg 5430405N12Rik|AW046354|AW549872|RPTPgamma protein tyrosine phosphatase, receptor type, G protein-coding 0.010000 0.422886 -60(ATTTACATGTCAAAGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-750 chr12 27182676 27182876 + -1.01340 NA Intergenic Intergenic -22260 NR_045870 636791 Mm.423496 NM_001039248 ENSMUSG00000094002 Gm9866 EG636791 predicted gene 9866 ncRNA 0.005000 0.502488 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-416 chr4 108595825 108596025 + -1.01340 NA intron (NM_011015, intron 5 of 16) L1ME1|LINE|L1 16471 NM_011015 18392 Mm.294154 NM_011015 ENSMUSG00000028587 Orc1 AA545195|MmORC1|Orc1l origin recognition complex, subunit 1 protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3234 chr7 130188227 130188427 + -1.01340 NA intron (NM_001347638, intron 7 of 15) intron (NM_001347638, intron 7 of 15) 78481 NM_010207 14183 Mm.16340 NM_010207 ENSMUSG00000030849 Fgfr2 AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs fibroblast growth factor receptor 2 protein-coding 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2291 chr3 63563108 63563308 + -1.01340 NA Intergenic RLTR53B_Mm|LTR|ERVK -79302 NM_001369305 102637511 NM_001369305 ENSMUSG00000103476 Strit1 DWORF|Gm34302 small transmembrane regulator of ion transport 1 protein-coding 0.005000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1207 chr14 111919518 111919718 + -1.01340 NA Intergenic Intergenic 244503 NM_198865 75409 Mm.235097 NM_029273 ENSMUSG00000033214 Slitrk5 2610019D03Rik SLIT and NTRK-like family, member 5 protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-567 chr11 19936240 19936440 + -1.01340 NA intron (NM_033523, intron 1 of 5) intron (NM_033523, intron 1 of 5) 11898 NM_033523 114716 Mm.266627 NM_033523 ENSMUSG00000045671 Spred2 C79158 sprouty-related EVH1 domain containing 2 protein-coding 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1095 chr14 30699783 30699983 + -1.01340 NA Intergenic Intergenic -14966 NM_019460 54650 Mm.294662 NM_019460 ENSMUSG00000006527 Sfmbt1 4930442N21Rik|9330180L21Rik|AA536974|Sfmbt|Smr Scm-like with four mbt domains 1 protein-coding 0.020000 0.592040 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3199 chr7 109481037 109481237 + -1.01340 NA intron (NM_001170913, intron 6 of 19) intron (NM_001170913, intron 6 of 19) 12601 NM_001170913 330627 Mm.183528 NM_181853 ENSMUSG00000031026 Trim66 Kiaa0298-hp|Tif1d tripartite motif-containing 66 protein-coding 0.020000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2869 chr5 114657748 114657948 + -1.01340 NA intron (NM_022017, intron 1 of 15) intron (NM_022017, intron 1 of 15) 573 NM_022017 63873 Mm.266450 NM_022017 ENSMUSG00000014158 Trpv4 0610033B08Rik|OTRPC4|Trp12|VR-OAC|VRL-2|VROAC transient receptor potential cation channel, subfamily V, member 4 protein-coding 0.015000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2183 chr2 161864899 161865099 + -1.01340 NA intron (NM_001291151, intron 9 of 30) intron (NM_001291151, intron 9 of 30) -525814 NR_040617 77645 Mm.447752 NR_040617 ENSMUSG00000084919 Ptprtos C330008G21Rik protein tyrosine phosphatase, receptor type T, opposite strand ncRNA 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1662 chr17 88146963 88147163 + -1.01340 NA Intergenic Intergenic 21551 NM_001190356 225058 Mm.312053 NM_001190356 Gm4832 EG225058 predicted gene 4832 protein-coding 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3257 chr7 139107690 139107890 + -1.01340 NA intron (NM_021302, intron 10 of 11) L1M4|LINE|L1 21789 NM_011993 26757 Mm.250414 NM_011993 ENSMUSG00000025478 Dpysl4 AI173505|CRMP-3|Crmp3|DPY4|Drp-4|Ulip4 dihydropyrimidinase-like 4 protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2055 chr2 94754292 94754492 + -1.01340 NA Intergenic Intergenic -316206 NM_001305258 11800 Mm.181824 NM_007466 ENSMUSG00000027193 Api5 AAC-11|AI196452|API-5 apoptosis inhibitor 5 protein-coding 0.010000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2822 chr5 83235887 83236087 + -1.01340 NA Intergenic Intergenic 119208 NM_153801 243078 Mm.126783 NM_153801 ENSMUSG00000049537 Tecrl D330017N19Rik|Srd5a2l2 trans-2,3-enoyl-CoA reductase-like protein-coding 0.000000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1846 chr19 16545786 16545986 + -1.01340 NA intron (NM_008137, intron 2 of 6) Lx5b|LINE|L1 110219 NM_008137 14675 Mm.313181 NM_008137 ENSMUSG00000024697 Gna14 AU023208 guanine nucleotide binding protein, alpha 14 protein-coding 0.005000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3171 chr7 88808765 88808965 + -1.01340 NA Intergenic Intergenic 378592 NM_028238 72433 Mm.276669 NM_028238 ENSMUSG00000030559 Rab38 2310011F14Rik|AU043391|cht RAB38, member RAS oncogene family protein-coding 0.000000 0.303483 -74(CATACATATACATA,+,0.00),-74(CATACATATACATA,-,0.00),-50(AATGCATATATATG,-,0.00),-27(TATAAATATGCATT,+,0.00),-27(TATAAATATGCATT,-,0.00) 48(TCTTTGTGTTTCTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2244 chr3 34825687 34825887 + -1.01340 NA Intergenic Intergenic 53712 NR_110488 102638436 Mm.261793 NR_110488 ENSMUSG00000106519 Gm38509 Peril predicted gene, 38509 ncRNA 0.000000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1076 chr14 20663884 20664084 + -1.01340 NA intron (NM_175132, intron 3 of 3) intron (NM_175132, intron 3 of 3) 590 NM_001310432 68760 Mm.35789 NM_175132 ENSMUSG00000039376 Synpo2l 1110054M18Rik|Chap synaptopodin 2-like protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1122 chr14 60151941 60152141 + -1.01340 NA Intergenic Lx8b|LINE|L1 -65127 NM_015803 50769 Mm.319599 NM_015803 ENSMUSG00000021983 Atp8a2 AI415030|Atpc1b|agil|wl ATPase, aminophospholipid transporter-like, class I, type 8A, member 2 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3506 chr9 29015745 29015945 + -1.01340 NA intron (NM_001357597, intron 4 of 8) intron (NM_001357597, intron 4 of 8) 396840 NM_001357601 235106 Mm.283138 NM_172290 ENSMUSG00000059974 Ntm 6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390 neurotrimin protein-coding 0.010000 0.363184 -29(ATTAGCATAATACAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2608 chr4 72416310 72416510 + -1.01340 NA Intergenic L1M4c|LINE|L1 215166 NR_027923 68285 Mm.37541 NR_027923 C630043F03Rik AI851307 RIKEN cDNA C630043F03 gene ncRNA 0.000000 0.283582 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-752 chr12 29235539 29235739 + -1.01340 NA Intergenic Intergenic 93710 NR_154987 102633526 Mm.134217 NR_154987 Gm31333 - predicted gene, 31333 ncRNA 0.010000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3306 chr8 31606838 31607038 + -1.01340 NA Intergenic Intergenic 239189 NR_046272 74517 Mm.390001 NR_046272 ENSMUSG00000109915 7420700N18Rik - RIKEN cDNA 7420700N18 gene ncRNA 0.005000 0.313433 -65(CTCAGCATGACAATTT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-713 chr11 116439750 116439950 + -1.01340 NA TTS (NM_176902) TTS (NM_176902) 5637 NR_003376 664849 Mm.258466 NR_003376 Gm7367 EG664849 1110014K08Rik pseudogene pseudo 0.015000 0.577114 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-169 chr1 98973881 98974081 + -1.01340 NA Intergenic Lx4A|LINE|L1 552857 NM_001164233 70866 Mm.389164 NM_027584 ENSMUSG00000026336 Slco6d1 4921511I05Rik solute carrier organic anion transporter family, member 6d1 protein-coding 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3079 chr6 135886270 135886470 + -1.01340 NA intron (NM_001363750, intron 5 of 14) intron (NM_001363750, intron 5 of 14) 227457 NR_126088 75024 Mm.399147 NR_126088 ENSMUSG00000107396 4930425L21Rik 4930473P14Rik RIKEN cDNA 4930425L21 gene ncRNA 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1505 chr16 66799694 66799894 + -1.01356 NA intron (NM_001145977, intron 4 of 8) Lx9|LINE|L1 142676 NR_040512 75501 Mm.394300 NR_040512 ENSMUSG00000092599 1700010K23Rik - RIKEN cDNA 1700010K23 gene ncRNA 0.000000 0.263682 -26(AATGAATATGTATA,+,0.00),-26(AATGAATATGTATA,-,0.00),35(CATGAATATGAAAG,-,0.00) -9(ATATTTGCATGTAAAT,+,0.00),-7(ATTTGCATGTAAATTG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-192 chr15 16531724 16531924 + -1.01356 NA Intergenic Intergenic -197091 NM_009869 12565 Mm.439758 NM_009869 ENSMUSG00000025370 Cdh9 - cadherin 9 protein-coding 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1473 chr16 51070246 51070446 + -1.01356 NA Intergenic Intergenic 286937 NR_131006 78639 Mm.160109 NR_131005 ENSMUSG00000092276 1700116B05Rik - RIKEN cDNA 1700116B05 gene ncRNA 0.000000 0.323383 -62(ACTTTGTGTTGTTAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-101 chr11 69242127 69242327 + -1.01356 NA Intergenic Intergenic -5205 NM_008192 14919 Mm.291816 NM_008192 ENSMUSG00000020890 Gucy2e GC-E|GC1|ROS-GC1 guanylate cyclase 2e protein-coding 0.000000 0.432836 2(ATATAAAAGATAAATC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3034 chr6 100023715 100023915 + -1.01356 NA Intergenic L1_Mur3|LINE|L1 263543 NM_019743 56353 Mm.321633 NM_019743 ENSMUSG00000072872 Rybp 2410018J24Rik|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1619 chr17 59269756 59269956 + -1.01356 NA Intergenic Intergenic -256534 NM_001368393 67993 Mm.36507 NM_026497 ENSMUSG00000024228 Nudt12 0610016O18Rik nudix (nucleoside diphosphate linked moiety X)-type motif 12 protein-coding 0.000000 0.333333 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-225 chr16 51070241 51070441 + -1.01356 NA Intergenic Intergenic 286932 NR_131006 78639 Mm.160109 NR_131005 ENSMUSG00000092276 1700116B05Rik - RIKEN cDNA 1700116B05 gene ncRNA 0.000000 0.318408 -57(ACTTTGTGTTGTTAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-481 chr6 100023701 100023901 + -1.01356 NA Intergenic L1_Mur3|LINE|L1 263557 NM_019743 56353 Mm.321633 NM_019743 ENSMUSG00000072872 Rybp 2410018J24Rik|DEDAF|YEAF1 RING1 and YY1 binding protein protein-coding 0.005000 0.393035 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-386 chr3 143993831 143994031 + -1.01356 NA Intergenic Intergenic 208401 NM_001161770 16911 Mm.29187 NM_010723 ENSMUSG00000028266 Lmo4 A730077C12Rik|Crp3|Etohi4 LIM domain only 4 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1260 chr15 16531730 16531930 + -1.01356 NA Intergenic Intergenic -197085 NM_009869 12565 Mm.439758 NM_009869 ENSMUSG00000025370 Cdh9 - cadherin 9 protein-coding 0.015000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1494 chr16 63946267 63946467 + -1.01460 NA Intergenic L1M4b|LINE|L1 -82192 NM_001362452 13837 Mm.1977 NM_010140 ENSMUSG00000052504 Epha3 AW492086|Cek4|EK4|ETK1|End3|Hek|Hek4|Mek4|Tyro4 Eph receptor A3 protein-coding 0.010000 0.323383 44(TGTTTTTCATGGTAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-447 chr5 98553235 98553435 + -1.01460 NA intron (NM_001024614, intron 3 of 5) intron (NM_001024614, intron 3 of 5) -77671 NR_030484 735265 NR_030484 ENSMUSG00000105814 Mir703 Mirn703|mir-703|mmu-mir-703 microRNA 703 ncRNA 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1585 chr17 17408293 17408493 + -1.01460 NA intron (NM_025681, intron 1 of 5) intron (NM_025681, intron 1 of 5) 5707 NM_025681 66643 Mm.268018 NM_025681 ENSMUSG00000047786 Lix1 5730466L18Rik limb and CNS expressed 1 protein-coding 0.015000 0.442786 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-228 chr16 63946167 63946367 + -1.01460 NA Intergenic L1M4b|LINE|L1 -82092 NM_001362452 13837 Mm.1977 NM_010140 ENSMUSG00000052504 Epha3 AW492086|Cek4|EK4|ETK1|End3|Hek|Hek4|Mek4|Tyro4 Eph receptor A3 protein-coding 0.015000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2539 chr4 30579804 30580004 + -1.01470 NA Intergenic Intergenic -84692 NR_040655 75332 Mm.108636 NR_040655 4930556G01Rik - RIKEN cDNA 4930556G01 gene ncRNA 0.005000 0.298507 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2564 chr4 45034233 45034433 + -1.01470 NA TTS (NM_001285800) TTS (NM_001285800) 15724 NM_001285800 64424 Mm.282932 NM_022811 ENSMUSG00000028318 Polr1e 53kDa|AU042259|D030019D19Rik|Paf53|Praf1 polymerase (RNA) I polypeptide E protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-867 chr12 106330223 106330423 + -1.01470 NA Intergenic Lx7|LINE|L1 117343 NR_036593 76639 Mm.375609 NR_036593 ENSMUSG00000092066 1700121N20Rik - RIKEN cDNA 1700121N20 gene ncRNA 0.025000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1561 chr16 96461634 96461834 + -1.01470 NA Intergenic Intergenic -5872 NM_008791 18546 Mm.5023 NM_008791 ENSMUSG00000090223 Pcp4 P16Rimb19|Pcp-4|Pep19 Purkinje cell protein 4 protein-coding 0.005000 0.427861 19(ATCTCCATCATAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2058 chr2 95637617 95637817 + -1.01470 NA Intergenic Intergenic -680452 NM_001289742 241568 Mm.241682 NM_178725 ENSMUSG00000050587 Lrrc4c 6430556C10Rik|NGL-1 leucine rich repeat containing 4C protein-coding 0.000000 0.388060 -52(GAATTCTCATGTTTAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3359 chr8 62575749 62575949 + -1.01470 NA Intergenic Intergenic -375383 NM_001252621 72902 Mm.334552 NM_023689 ENSMUSG00000054162 Spock3 2900045C01Rik|AI428471|mKIAA4039 sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3 protein-coding 0.010000 0.412935 -60(AATGCATTTTACATC,-,0.00) -54(TTTTACATCACAGAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1566 chr17 3893845 3894045 + -1.01470 NA Intergenic Lx8b|LINE|L1 189050 NR_045764 75815 Mm.183387 NR_045764 ENSMUSG00000116975 4930470H14Rik - RIKEN cDNA 4930470H14 gene ncRNA 0.010000 0.353234 -47(CTTTTATAATGCAATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3285 chr8 18907026 18907226 + -1.01470 NA Intergenic Intergenic 43745 NM_001286469 319581 Mm.111354 NM_176951 ENSMUSG00000039814 Xkr5 5430438H03Rik|XRG5 X-linked Kx blood group related 5 protein-coding 0.000000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3455 chr8 121382446 121382646 + -1.01470 NA Intergenic Intergenic 159408 NM_001357259 76405 Mm.165697 NM_029597 ENSMUSG00000031809 1700018B08Rik 1700084O22Rik RIKEN cDNA 1700018B08 gene protein-coding 0.035000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-586 chr11 28890852 28891052 + -1.01470 NA intron (NM_146015, intron 4 of 10) MLT1F2|LTR|ERVL-MaLR 37747 NM_146015 216616 Mm.44176 NM_146015 ENSMUSG00000020467 Efemp1 - epidermal growth factor-containing fibulin-like extracellular matrix protein 1 protein-coding 0.020000 0.412935 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-170 chr14 65666209 65666409 + -1.01470 NA promoter-TSS (NM_028903) promoter-TSS (NM_028903) -94 NM_028903 71145 Mm.83840 NM_028903 ENSMUSG00000022032 Scara5 4932433F15Rik|4933425F03Rik|AV278087|Tesr scavenger receptor class A, member 5 protein-coding 0.005000 0.452736 48(TTTTTTTTTTTTAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-136 chr13 32490363 32490563 + -1.01470 NA Intergenic Intergenic -151919 NM_146041 218138 Mm.247143 NM_146041 ENSMUSG00000038372 Gmds BC031788|C87208 GDP-mannose 4, 6-dehydratase protein-coding 0.010000 0.393035 -95(TCTTTCTTATTGTTAT,+,0.00),54(ATTTCAACAACAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1267 chr15 20640711 20640911 + -1.01470 NA Intergenic RMER6C|LTR|ERVK 25939 NM_022816 64833 Mm.352763 NM_022816 ENSMUSG00000047565 Acot10 Acate3|MT-ACT48|p48 acyl-CoA thioesterase 10 protein-coding 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1431 chr16 24263937 24264137 + -1.01470 NA Intergenic Intergenic -129313 NM_178665 210126 Mm.209385 NM_178665 ENSMUSG00000033306 Lpp 9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16 LIM domain containing preferred translocation partner in lipoma protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1134 chr14 65666200 65666400 + -1.01470 NA promoter-TSS (NM_028903) promoter-TSS (NM_028903) -103 NM_028903 71145 Mm.83840 NM_028903 ENSMUSG00000022032 Scara5 4932433F15Rik|4933425F03Rik|AV278087|Tesr scavenger receptor class A, member 5 protein-coding 0.005000 0.452736 57(TTTTTTTTTTTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1038 chr13 112739301 112739501 + -1.01470 NA TTS (NM_178746) TTS (NM_178746) -61376 NM_008247 19012 Mm.291029 NM_008247 ENSMUSG00000021759 Plpp1 Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP phospholipid phosphatase 1 protein-coding 0.015000 0.368159 -27(ATTTGAAAGACTGAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2318 chr3 76708773 76708973 + -1.01470 NA 3' UTR (NM_001253719, exon 16 of 16) 3' UTR (NM_001253719, exon 16 of 16) 633290 NM_001253719 213262 Mm.379337 NM_178673 ENSMUSG00000034098 Fstl5 9130207J01Rik follistatin-like 5 protein-coding 0.000000 0.358209 5(ATTTGTATGGTAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2175 chr2 154520658 154520858 + -1.01470 NA intron (NM_001285446, intron 6 of 10) intron (NM_001285446, intron 6 of 10) -28146 NM_029305 75480 Mm.440434 NM_029305 ENSMUSG00000038523 1700003F12Rik - RIKEN cDNA 1700003F12 gene protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2024 chr2 61147542 61147742 + -1.01470 NA Intergenic Intergenic -172491 NR_045335 100038493 Mm.388076 NR_045335 ENSMUSG00000075325 Gm13582 - predicted gene 13582 ncRNA 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3625 chr9 99645623 99645823 + -1.01470 NA intron (NM_028258, intron 5 of 15) intron (NM_028258, intron 5 of 15) 16145 NM_001311142 72507 Mm.221455 NM_028258 ENSMUSG00000037784 Dzip1l 2610524A10Rik|AI663976 DAZ interacting protein 1-like protein-coding 0.020000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1530 chr16 82244996 82245196 + -1.01470 NA Intergenic L1_Mur3|LINE|L1 1044399 NM_010954 17968 Mm.433941 NM_010954 ENSMUSG00000022762 Ncam2 Ncam-2|Ocam|RNCAM neural cell adhesion molecule 2 protein-coding 0.010000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3393 chr8 83159774 83159974 + -1.01470 NA Intergenic RLTR11A2|LTR|ERVK -5478 NM_027758 71310 Mm.24031 NM_027758 ENSMUSG00000031709 Tbc1d9 4933431N12Rik|AI847101|AW490653|C76116 TBC1 domain family, member 9 protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3339 chr8 47354773 47354973 + -1.01470 NA Intergenic RMER21A|LTR|ERV1 -2525 NM_175162 71069 Mm.23973 NM_175162 ENSMUSG00000038143 Stox2 4933409N07Rik|AI449080|AI835114|mKIAA1392 storkhead box 2 protein-coding 0.030000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2147 chr2 140128483 140128683 + -1.01470 NA intron (NM_001081090, intron 11 of 13) intron (NM_001081090, intron 11 of 13) 41975 NM_001081090 66580 Mm.21228 NM_001081090 ENSMUSG00000045624 Esf1 2610101J03Rik|ABTAP|AW545818|C79684 ESF1 nucleolar pre-rRNA processing protein homolog protein-coding 0.000000 0.303483 -33(ATTTAAAAGAATATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2813 chr5 78933502 78933702 + -1.01470 NA Intergenic RLTR22_Mur|LTR|ERVK 1468114 NR_131050 69370 Mm.426881 NR_131050 ENSMUSG00000107232 1700017L05Rik - RIKEN cDNA 1700017L05 gene ncRNA 0.005000 0.348259 -53(AATGCAAATGTATA,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-383 chr3 139224830 139225030 + -1.01470 NA intron (NM_198659, intron 4 of 13) intron (NM_198659, intron 4 of 13) 19037 NM_198659 381476 Mm.188334 NM_198659 ENSMUSG00000047940 Stpg2 B930007M17Rik|Gm1017 sperm tail PG rich repeat containing 2 protein-coding 0.010000 0.348259 30(ATTAGCATAATAACAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-266 chr1 158765916 158766116 + -1.01470 NA intron (NM_001085376, intron 17 of 22) intron (NM_001085376, intron 17 of 22) 192159 NM_001085376 23850 Mm.458621 NM_001085376 ENSMUSG00000073530 Pappa2 PAPP-A2|PLAC3|Pappe pappalysin 2 protein-coding 0.010000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3222 chr7 123405575 123405775 + -1.01470 NA intron (NM_025304, intron 5 of 10) intron (NM_025304, intron 5 of 10) -2142 NM_001355050 30949 Mm.260527 NM_025304 ENSMUSG00000030763 Lcmt1 AL033290|LCMT-1|Lcmt leucine carboxyl methyltransferase 1 protein-coding 0.010000 0.333333 -80(CTTTAAAAAATAATAA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-516 chr8 24400328 24400528 + -1.01470 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 38518 NM_026931 69068 Mm.25775 NM_026931 ENSMUSG00000056313 Tcim 1110065B09Rik|1810011O10Rik|AW121743|AW321058 transcriptional and immune response regulator protein-coding 0.000000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-918 chr13 21282713 21282913 + -1.01470 NA Intergenic Lx3_Mus|LINE|L1 9873 NM_010343 14780 Mm.1332 NM_010343 ENSMUSG00000004344 Gpx5 AV379049|Arep glutathione peroxidase 5 protein-coding 0.000000 0.407960 31(ATTAAAAAAAGAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2259 chr3 51661023 51661223 + -1.01470 NA promoter-TSS (NM_001310482) promoter-TSS (NM_001310482) -56 NM_001310482 211666 Mm.24679 NM_174995 ENSMUSG00000074604 Mgst2 GST2|MGST-II microsomal glutathione S-transferase 2 protein-coding 0.000000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1082 chr14 22908863 22909063 + -1.01470 NA intron (NM_028275, intron 6 of 6) intron (NM_028275, intron 6 of 6) 185608 NR_033550 791307 Mm.364384 NR_033550 ENSMUSG00000068680 Gm10248 - predicted gene 10248 ncRNA 0.000000 0.422886 9(CATGTATATGCAGA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1876 chr19 32524330 32524530 + -1.01470 NA Intergenic Intergenic 38661 NM_010799 17330 Mm.255116 NM_010799 ENSMUSG00000024896 Minpp1 AA408516 multiple inositol polyphosphate histidine phosphatase 1 protein-coding 0.020000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1305 chr15 44462827 44463027 + -1.01579 NA intron (NM_138674, intron 2 of 77) intron (NM_138674, intron 2 of 77) 5474 NM_138674 192190 Mm.211494 NM_138674 ENSMUSG00000038725 Pkhd1l1 AB055648|PKHDL1 polycystic kidney and hepatic disease 1-like 1 protein-coding 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3379 chr8 77051946 77052146 + -1.01579 NA intron (NM_001083906, intron 2 of 8) intron (NM_001083906, intron 2 of 8) 149716 NM_001083906 110784 Mm.324393 NM_001083906 ENSMUSG00000031618 Nr3c2 MR|Mlr nuclear receptor subfamily 3, group C, member 2 protein-coding 0.010000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-528 chr8 77051934 77052134 + -1.01579 NA intron (NM_001083906, intron 2 of 8) intron (NM_001083906, intron 2 of 8) 149704 NM_001083906 110784 Mm.324393 NM_001083906 ENSMUSG00000031618 Nr3c2 MR|Mlr nuclear receptor subfamily 3, group C, member 2 protein-coding 0.015000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3104 chr7 37825918 37826118 + -1.01612 NA Intergenic Intergenic -56266 NM_172385 243937 Mm.322505 NM_172385 ENSMUSG00000043456 Zfp536 9630010P11Rik|Znf536|mKIAA0390 zinc finger protein 536 protein-coding 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1001 chr13 89425984 89426184 + -1.01612 NA Intergenic L2|LINE|L2 -114552 NM_013500 12950 Mm.266790 NM_013500 ENSMUSG00000021613 Hapln1 BB099155|CLP|Crtl1|Crtl1l|LP|LP-1 hyaluronan and proteoglycan link protein 1 protein-coding 0.020000 0.437811 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-334 chr2 138397034 138397234 + -1.01612 NA Intergenic Intergenic 118641 NM_145534 228662 Mm.153405 NM_145534 ENSMUSG00000062098 Btbd3 mKIAA0952 BTB (POZ) domain containing 3 protein-coding 0.010000 0.368159 -35(TGTGAATATGCAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2168 chr2 149768206 149768406 + -1.01612 NA Intergenic LTR16E1|LTR|ERVL -62477 NM_001363094 433485 Mm.330649 NM_001085521 ENSMUSG00000074736 Syndig1 AW123113|DSPC2|Gm14134|H2C20orf39|Tmem90b synapse differentiation inducing 1 protein-coding 0.005000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3436 chr8 110764747 110764947 + -1.01612 NA intron (NM_029646, intron 1 of 7) L1ME1|LINE|L1 39121 NM_001310591 244654 Mm.490385 NM_198625 ENSMUSG00000033763 Mtss2 ABBA|Mtss1l MTSS I-BAR domain containing 2 protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-346 chr10 16257151 16257351 + -1.01612 NA Intergenic Intergenic 465474 NR_131087 77538 Mm.128235 NR_131087 ENSMUSG00000112227 C330004P14Rik - RIKEN cDNA C330004P14 gene ncRNA 0.000000 0.258706 -27(TTATTTTCATGATAAT,+,0.00),-25(ATTTTCATGATAATTG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-727 chr12 8348901 8349101 + -1.01612 NA Intergenic Intergenic 35568 NM_021429 58240 Mm.309954 NM_021429 ENSMUSG00000020605 Hs1bp3 - HCLS1 binding protein 3 protein-coding 0.005000 0.582090 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-85 chr10 118668031 118668231 + -1.01612 NA Intergenic Intergenic 47595 NR_155867 102636202 Mm.407006 NR_155867 Gm33337 - predicted gene, 33337 ncRNA 0.005000 0.427861 -36(CTAGTGTGATGCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-969 chr13 58547677 58547877 + -1.01612 NA Intergenic Intergenic 63100 NM_022317 114304 Mm.18188 NM_022317 ENSMUSG00000021553 Slc28a3 Cnt3 solute carrier family 28 (sodium-coupled nucleoside transporter), member 3 protein-coding 0.030000 0.452736 -82(CTGTTGCCATGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3411 chr8 94134686 94134886 + -1.01612 NA Intergenic Intergenic -2418 NM_008631 17752 Mm.1536 NM_008631 ENSMUSG00000031757 Mt4 MT-IV metallothionein 4 protein-coding 0.010000 0.497512 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-450 chr5 137425546 137425746 + -1.01612 NA exon (NM_011741, exon 40 of 88) exon (NM_011741, exon 40 of 88) 51418 NM_011741 22635 Mm.7984 NM_011741 ENSMUSG00000079173 Zan Zan-test zonadhesin protein-coding 0.010000 0.597015 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3512 chr9 32717387 32717587 + -1.01612 NA intron (NM_001038642, intron 1 of 6) intron (NM_001038642, intron 1 of 6) 21445 NM_011808 23871 Mm.292415 NM_011808 ENSMUSG00000032035 Ets1 AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs E26 avian leukemia oncogene 1, 5' domain protein-coding 0.035000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1079 chr14 21307739 21307939 + -1.01612 NA intron (NM_134079, intron 6 of 10) MER119|DNA|hAT-Charlie -191931 NM_001205241 54169 Mm.248967 NM_017479 ENSMUSG00000021767 Kat6b AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf K(lysine) acetyltransferase 6B protein-coding 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1717 chr18 31340136 31340336 + -1.01612 NA Intergenic Intergenic -23108 NM_009065 19762 Mm.5163 NM_009065 ENSMUSG00000057455 Rit2 RIBA|Rin|Roc2 Ras-like without CAAX 2 protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-768 chr12 39378078 39378278 + -1.01612 NA Intergenic Intergenic 594467 NM_001163154 14009 Mm.4866 NM_007960 ENSMUSG00000004151 Etv1 ER81|Etsrp81 ets variant 1 protein-coding 0.005000 0.278607 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2093 chr2 110936472 110936672 + -1.01612 NA intron (NM_001355246, intron 1 of 3) intron (NM_001355246, intron 1 of 3) 13672 NM_001355245 228432 Mm.483325 NM_001081556 ENSMUSG00000074968 Ano3 AI838058|B230324K02Rik|Tmem16c anoctamin 3 protein-coding 0.000000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1233 chr14 123599314 123599514 + -1.01612 NA intron (NM_177393, intron 2 of 43) intron (NM_177393, intron 2 of 43) 27730 NM_177393 338370 Mm.255348 NM_177393 ENSMUSG00000000197 Nalcn A530023G15Rik|AI849508|Vgcnl1 sodium leak channel, non-selective protein-coding 0.010000 0.393035 17(ATTTGAATCAAAGTAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1418 chr16 14372893 14373093 + -1.01612 NA intron (NM_008576, intron 1 of 30) intron (NM_008576, intron 1 of 30) 11435 NM_008576 17250 Mm.196634 NM_008576 ENSMUSG00000023088 Abcc1 Abcc1a|Abcc1b|MRP|Mdrap|Mrp1 ATP-binding cassette, sub-family C (CFTR/MRP), member 1 protein-coding 0.010000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-180 chr1 105384694 105384894 + -1.01612 NA Intergenic Intergenic -28084 NM_178779 320311 Mm.389162 NM_178779 ENSMUSG00000047496 Rnf152 A930029B02Rik ring finger protein 152 protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3349 chr8 56298817 56299017 + -1.01612 NA intron (NM_008278, intron 3 of 6) Cheshire|DNA|hAT-Charlie 4365 NM_008278 15446 Mm.18832 NM_008278 ENSMUSG00000031613 Hpgd 15-PGDH|AV026552 hydroxyprostaglandin dehydrogenase 15 (NAD) protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2666 chr4 106577240 106577440 + -1.01612 NA intron (NM_053272, intron 5 of 8) intron (NM_053272, intron 5 of 8) 16302 NM_053272 74754 Mm.133370 NM_053272 ENSMUSG00000034926 Dhcr24 2310076D10Rik|5830417J06Rik|mKIAA0018 24-dehydrocholesterol reductase protein-coding 0.015000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1525 chr16 78274741 78274941 + -1.01612 NA Intergenic Intergenic -19387 NR_045698 100503619 Mm.387531 NR_045698 ENSMUSG00000109841 E330011O21Rik - RIKEN cDNA E330011O21 gene ncRNA 0.020000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-208 chr1 119342500 119342700 + -1.01612 NA Intergenic RLTR20B3A_MM|LTR|ERVK 79648 NM_008381 16324 Mm.3092 NM_008381 ENSMUSG00000037035 Inhbb - inhibin beta-B protein-coding 0.010000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-776 chr12 41864475 41864675 + -1.01657 NA intron (NM_053122, intron 6 of 6) intron (NM_053122, intron 6 of 6) -378518 NM_010733 16981 Mm.404786 NM_010733 ENSMUSG00000036295 Lrrn3 NLRR-3 leucine rich repeat protein 3, neuronal protein-coding 0.000000 0.427861 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-65 chr10 73364232 73364432 + -1.01674 NA Intergenic MTEb|LTR|ERVL-MaLR -277627 NR_040646 327768 Mm.417745 NR_040646 ENSMUSG00000111994 A330049N07Rik - RIKEN cDNA A330049N07 gene ncRNA 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-361 chr10 23749311 23749511 + -1.01763 NA Intergenic ORR1E|LTR|ERVL-MaLR 36040 NR_037680 100529074 Mm.371846 NR_037680 ENSMUSG00000070063 Snora33 ACA33|MBI-42 small nucleolar RNA, H/ACA box 33 snoRNA 0.005000 0.402985 -73(ATTAGTAAAAGAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2353 chr3 96486099 96486299 + -1.01763 NA Intergenic Intergenic -33893 NM_001256181 329716 Mm.275223 NM_183223 ENSMUSG00000046317 BC107364 D730018G16 cDNA sequence BC107364 protein-coding 0.025000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1720 chr18 31931304 31931504 + -1.01763 NA promoter-TSS (NM_144862) promoter-TSS (NM_144862) -76 NM_144862 225341 Mm.24551 NM_144862 ENSMUSG00000024395 Lims2 PINCH2 LIM and senescent cell antigen like domains 2 protein-coding 0.055000 0.626866 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-697 chr11 105315315 105315515 + -1.01763 NA intron (NM_008626, intron 1 of 29) intron (NM_008626, intron 1 of 29) 22769 NM_008626 17534 Mm.235616 NM_008626 ENSMUSG00000020695 Mrc2 Endo180|mKIAA0709|uPARAP mannose receptor, C type 2 protein-coding 0.025000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1030 chr13 106551681 106551881 + -1.01763 NA Intergenic Intergenic 385177 NM_029665 76582 Mm.132208 NM_029665 ENSMUSG00000042590 Ipo11 1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11 importin 11 protein-coding 0.015000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2442 chr3 129998043 129998243 + -1.01763 NA intron (NM_207209, intron 11 of 23) intron (NM_207209, intron 11 of 23) -27937 NM_025779 66815 Mm.31056 NM_025779 ENSMUSG00000027994 Mcub 9030408N13Rik|Ccdc109b mitochondrial calcium uniporter dominant negative beta subunit protein-coding 0.020000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3714 chrX 76869141 76869341 + -1.01763 NA Intergenic Lx9|LINE|L1 -266317 NM_001201395 74987 Mm.107996 NM_001201395 ENSMUSG00000079525 Cldn34d 4930468A15Rik claudin 34D protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3757 chrX 147106218 147106418 + -1.01763 NA promoter-TSS (NR_162774) promoter-TSS (NR_162774) -647 NR_162774 114483767 NR_162774 Mir1911 mmu-mir-1911 microRNA mir-1911 ncRNA 0.000000 0.402985 -37(CTTGAATAATGCAGT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-144 chr1 81362272 81362472 + -1.01763 NA Intergenic Intergenic 284965 NM_001356397 241134 Mm.313904 NM_172849 ENSMUSG00000054976 Nyap2 9430031J16Rik|Jr6|Kiaa1486 neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 protein-coding 0.005000 0.258706 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3576 chr9 78880895 78881095 + -1.01763 NA Intergenic Intergenic 265449 NM_153098 235505 Mm.32955 NM_153098 ENSMUSG00000046186 Cd109 9930012E15Rik|AI480638|GARP CD109 antigen protein-coding 0.005000 0.402985 -99(TGTGCATAATTTATT,+,0.00),-99(TGTGCATAATTTATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1639 chr17 71780539 71780739 + -1.01763 NA promoter-TSS (NM_001271483) promoter-TSS (NM_001271483) -660 NM_001271483 78785 Mm.196382 NM_030179 ENSMUSG00000024059 Clip4 1700024K14Rik|1700074B05Rik|4833417L20Rik|5830409B12Rik|Rsnl2 CAP-GLY domain containing linker protein family, member 4 protein-coding 0.000000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-209 chr1 119342762 119342962 + -1.01763 NA Intergenic B1_Mus2|SINE|Alu 79386 NM_008381 16324 Mm.3092 NM_008381 ENSMUSG00000037035 Inhbb - inhibin beta-B protein-coding 0.005000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-152 chr13 95508672 95508872 + -1.01763 NA Intergenic Intergenic 16468 NM_007974 14063 Mm.1614 NM_007974 ENSMUSG00000021678 F2rl1 Gpcr11|PAR-2|Par2 coagulation factor II (thrombin) receptor-like 1 protein-coding 0.015000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-402 chr4 66310968 66311168 + -1.01763 NA intron (NM_207109, intron 1 of 22) intron (NM_207109, intron 1 of 22) 93415 NM_019514 56079 Mm.445312 NM_019514 ENSMUSG00000028373 Astn2 1d8|Astnl|bM452J22.1 astrotactin 2 protein-coding 0.005000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3489 chr9 16882565 16882765 + -1.01763 NA Intergenic Intergenic -380611 NM_001080814 270120 Mm.195010 NM_001080814 ENSMUSG00000074505 Fat3 9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F FAT atypical cadherin 3 protein-coding 0.000000 0.333333 32(TATTCATATTTATG,-,0.00) 5(TGATAGTCATGTTGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2779 chr5 51045829 51046029 + -1.01763 NA Intergenic Intergenic 507992 NM_008904 19017 Mm.259072 NM_008904 ENSMUSG00000029167 Ppargc1a A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1 peroxisome proliferative activated receptor, gamma, coactivator 1 alpha protein-coding 0.000000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1350 chr15 72715749 72715949 + -1.01763 NA intron (NM_180662, intron 18 of 21) intron (NM_180662, intron 18 of 21) 94475 NR_002864 353342 Mm.440245 NR_002864 ENSMUSG00000106847 Peg13 - paternally expressed 13 ncRNA 0.010000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-248 chr1 147315590 147315790 + -1.01763 NA Intergenic Intergenic 818003 NM_001145807 215378 Mm.441817 NM_153539 ENSMUSG00000035131 Brinp3 B830045N13Rik|Fam5c bone morphogenetic protein/retinoic acid inducible neural specific 3 protein-coding 0.005000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1014 chr13 95508702 95508902 + -1.01763 NA Intergenic Intergenic 16438 NM_007974 14063 Mm.1614 NM_007974 ENSMUSG00000021678 F2rl1 Gpcr11|PAR-2|Par2 coagulation factor II (thrombin) receptor-like 1 protein-coding 0.015000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-90 chr1 57053950 57054150 + -1.01763 NA Intergenic L1MA5A|LINE|L1 -73802 NM_001358580 212712 Mm.145599 NM_139146 ENSMUSG00000038331 Satb2 BAP002|mKIAA1034 special AT-rich sequence binding protein 2 protein-coding 0.010000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2122 chr2 128497916 128498116 + -1.01763 NA Intergenic MTEb|LTR|ERVL-MaLR -68665 NR_028590 100043424 Mm.297222 NR_028589 Morrbid Gm14005|Mir4435-2hg myeloid RNA regulator of BCL2L11 induced cell death ncRNA 0.015000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1576 chr17 10442411 10442611 + -1.01763 NA intron (NM_027032, intron 4 of 4) intron (NM_027032, intron 4 of 4) -13705 NR_077239 319750 Mm.383485 NR_077237 ENSMUSG00000089633 A230009B12Rik - RIKEN cDNA A230009B12 gene ncRNA 0.015000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3293 chr8 23061181 23061381 + -1.01763 NA intron (NR_102385, intron 1 of 45) intron (NR_102385, intron 1 of 45) 3022 NR_102385 11733 Mm.334444 NM_031158 ENSMUSG00000031543 Ank1 Ank-1|nb|pale ankyrin 1, erythroid protein-coding 0.040000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1651 chr17 79832507 79832707 + -1.01763 NA Intergenic Intergenic 63516 NM_001286647 56298 Mm.175403 NM_019717 ENSMUSG00000059811 Atl2 2010110I21Rik|AA407293|AV334690|Aip-2|Arl6ip2 atlastin GTPase 2 protein-coding 0.005000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-370 chr3 96486106 96486306 + -1.01763 NA Intergenic Intergenic -33900 NM_001256181 329716 Mm.275223 NM_183223 ENSMUSG00000046317 BC107364 D730018G16 cDNA sequence BC107364 protein-coding 0.025000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-432 chr10 60697064 60697264 + -1.01763 NA promoter-TSS (NM_001252635) promoter-TSS (NM_001252635) -674 NR_045556 22295 Mm.440327 NM_023370 ENSMUSG00000012819 Cdh23 4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v cadherin 23 (otocadherin) protein-coding 0.015000 0.597015 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1973 chr2 31742076 31742276 + -1.01763 NA intron (NM_001283047, intron 2 of 11) intron (NM_001283047, intron 2 of 11) -17763 NM_009594 11350 Mm.1318 NM_009594 ENSMUSG00000026842 Abl1 AI325092|Abl|E430008G22Rik|c-Abl c-abl oncogene 1, non-receptor tyrosine kinase protein-coding 0.000000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-320 chr1 192557269 192557469 + -1.01796 NA intron (NM_144881, intron 10 of 11) intron (NM_144881, intron 10 of 11) 213850 NM_144881 226861 Mm.145857 NM_144881 ENSMUSG00000037375 Hhat 2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will hedgehog acyltransferase protein-coding 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2355 chr3 97992509 97992709 + -1.01796 NA Intergenic Intergenic -20929 NM_010928 18129 Mm.485843 NM_010928 ENSMUSG00000027878 Notch2 AI853703|N2 notch 2 protein-coding 0.010000 0.492537 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-371 chr3 97992521 97992721 + -1.01796 NA Intergenic Intergenic -20917 NM_010928 18129 Mm.485843 NM_010928 ENSMUSG00000027878 Notch2 AI853703|N2 notch 2 protein-coding 0.010000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2517 chr4 12774880 12775080 + -1.01796 NA Intergenic Intergenic -131857 NM_173746 208820 Mm.12057 NM_173746 ENSMUSG00000055963 Triqk C130086A10|Gm11818 triple QxxK/R motif containing protein-coding 0.010000 0.437811 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-38 chr1 192557263 192557463 + -1.01796 NA intron (NM_144881, intron 10 of 11) intron (NM_144881, intron 10 of 11) 213856 NM_144881 226861 Mm.145857 NM_144881 ENSMUSG00000037375 Hhat 2810432O22Rik|AI462858|AP-2CRE|Skn|Tg(TFAP2A-cre)1Will hedgehog acyltransferase protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-551 chr11 9645299 9645499 + -1.01796 NA intron (NM_178259, intron 59 of 61) intron (NM_178259, intron 59 of 61) 453457 NM_178259 268379 Mm.39270 NM_178259 ENSMUSG00000004668 Abca13 9830132L24|A930002G16Rik|AI956815 ATP-binding cassette, sub-family A (ABC1), member 13 protein-coding 0.005000 0.398010 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-349 chr3 13179408 13179608 + -1.01882 NA Intergenic Intergenic -292147 NM_001163328 76897 Mm.422625 NM_178631 ENSMUSG00000039717 Ralyl 0710005M24Rik RALY RNA binding protein-like protein-coding 0.000000 0.348259 -91(TTATTCTTATTAATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2217 chr3 13179419 13179619 + -1.01882 NA Intergenic Intergenic -292136 NM_001163328 76897 Mm.422625 NM_178631 ENSMUSG00000039717 Ralyl 0710005M24Rik RALY RNA binding protein-like protein-coding 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2538 chr4 30450357 30450557 + -1.01882 NA Intergenic Intergenic -214139 NR_040655 75332 Mm.108636 NR_040655 4930556G01Rik - RIKEN cDNA 4930556G01 gene ncRNA 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2603 chr4 70576731 70576931 + -1.01882 NA Intergenic MTC|LTR|ERVL-MaLR -41903 NM_172694 230316 Mm.251188 NM_172694 ENSMUSG00000039270 Megf9 4933405H16Rik|9630025C07|Egfl5|mKIAA0818 multiple EGF-like-domains 9 protein-coding 0.000000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1352 chr15 73718224 73718424 + -1.01918 NA Intergenic L1MA4|LINE|L1 -4821 NM_001166389 19245 Mm.390807 NM_008975 ENSMUSG00000059895 Ptp4a3 AV088979|Prl-3|pPtp4a3 protein tyrosine phosphatase 4a3 protein-coding 0.025000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1952 chr2 16653140 16653340 + -1.01918 NA intron (NM_026162, intron 6 of 13) intron (NM_026162, intron 6 of 13) 296936 NM_026162 67448 Mm.313938 NM_026162 ENSMUSG00000026748 Plxdc2 1200007L24Rik|5430431D22Rik|AI646728|AU022916|AV231634|Tem7r plexin domain containing 2 protein-coding 0.010000 0.298507 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3207 chr7 113310213 113310413 + -1.01918 NA intron (NM_001357070, intron 18 of 19) intron (NM_001357070, intron 18 of 19) 59026 NM_133700 68815 Mm.238034 NM_133700 ENSMUSG00000038187 Btbd10 1110056N09Rik|Gmrp1 BTB (POZ) domain containing 10 protein-coding 0.010000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2572 chr4 49659186 49659386 + -1.01918 NA Intergenic Intergenic 20661 NM_001356401 109331 Mm.24765 NM_182999 ENSMUSG00000028309 Rnf20 4833430L21Rik|AW540162|C79397|mKIAA4116 ring finger protein 20 protein-coding 0.000000 0.368159 28(TTTTTCTCTTTCAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3662 chr9 121435506 121435706 + -1.01918 NA intron (NM_001357970, intron 3 of 15) (TG)n|Simple_repeat|Simple_repeat 32160 NM_001357968 67095 Mm.491112 NM_175114 ENSMUSG00000032536 Trak1 2310001H13Rik|AI413908|AI467545|hyrt|mKIAA1042 trafficking protein, kinesin binding 1 protein-coding 0.005000 0.492537 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-249 chr17 21478335 21478535 + -1.01918 NA Intergenic Intergenic -10553 NM_013843 24132 Mm.42140 NM_013843 ENSMUSG00000057409 Zfp53 D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8 zinc finger protein 53 protein-coding 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3288 chr8 20904985 20905185 + -1.01918 NA Intergenic Intergenic -2629 NM_001177471 100504014 Mm.490239 NM_001177471 ENSMUSG00000082976 Gm15056 Defb52 predicted gene 15056 protein-coding 0.015000 0.393035 -32(ACTTTTTTTTTCAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2571 chr4 48886624 48886824 + -1.01918 NA Intergenic Intergenic -172738 NM_178756 272031 Mm.299460 NM_178756 ENSMUSG00000063446 Plppr1 E130309F12Rik|Lppr1|PRG-3|mKIAA4247 phospholipid phosphatase related 1 protein-coding 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1331 chr15 55736705 55736905 + -1.01918 NA intron (NM_016667, intron 3 of 6) Tigger6a|DNA|TcMar-Tigger 170144 NM_016667 20649 Mm.309425 NM_016667 ENSMUSG00000060429 Sntb1 - syntrophin, basic 1 protein-coding 0.005000 0.393035 -18(ATCTGCATAATAATCT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-978 chr13 73803698 73803898 + -1.01918 NA intron (NM_001360694, intron 17 of 24) intron (NM_001360694, intron 17 of 24) 40101 NM_011390 20499 Mm.275800 NM_011390 ENSMUSG00000017756 Slc12a7 AA408796|D13Ertd261e|Kcc4 solute carrier family 12, member 7 protein-coding 0.015000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2639 chr4 91906175 91906375 + -1.01918 NA Intergenic Intergenic 240946 NM_027034 69314 Mm.55891 NM_027034 ENSMUSG00000028533 Izumo3 1700011H22Rik IZUMO family member 3 protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3570 chr9 76096316 76096516 + -1.01918 NA intron (NM_173731, intron 7 of 8) intron (NM_173731, intron 7 of 8) 81439 NM_173731 208982 Mm.82306 NM_173731 ENSMUSG00000007908 Hmgcll1 BC037381 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 protein-coding 0.005000 0.313433 -69(CTATAGTAATTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3589 chr9 82747433 82747633 + -1.01918 NA Intergenic Intergenic -82273 NM_001168240 65099 Mm.41415 NM_022986 ENSMUSG00000032251 Irak1bp1 4921528N06Rik|AI851240|Aabp3|Aip70|Simpl interleukin-1 receptor-associated kinase 1 binding protein 1 protein-coding 0.020000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1348 chr15 70514928 70515128 + -1.01918 NA Intergenic Intergenic 590795 NR_045071 100503580 Mm.404646 NR_045071 ENSMUSG00000116483 Gm19782 - predicted gene, 19782 ncRNA 0.000000 0.432836 -32(ATTTCCATAAGCATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1239 chr15 6411344 6411544 + -1.01918 NA intron (NM_001037905, intron 1 of 13) intron (NM_001037905, intron 1 of 13) 24696 NM_023118 13132 Mm.240830 NM_023118 ENSMUSG00000022150 Dab2 5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96 disabled 2, mitogen-responsive phosphoprotein protein-coding 0.010000 0.378109 54(ACATAGTCATTCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1661 chr17 88115311 88115511 + -1.01918 NA Intergenic ORR1C2|LTR|ERVL-MaLR -10101 NM_001190356 225058 Mm.312053 NM_001190356 Gm4832 EG225058 predicted gene 4832 protein-coding 0.010000 0.517413 73(CCGTTTTCATTCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-397 chr4 48886619 48886819 + -1.01918 NA Intergenic Intergenic -172743 NM_178756 272031 Mm.299460 NM_178756 ENSMUSG00000063446 Plppr1 E130309F12Rik|Lppr1|PRG-3|mKIAA4247 phospholipid phosphatase related 1 protein-coding 0.000000 0.313433 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-581 chrX 133590329 133590529 + -1.01918 NA intron (NM_001105246, intron 4 of 4) intron (NM_001105246, intron 4 of 4) -97351 NR_153117 102632590 Mm.403836 NR_153117 ENSMUSG00000096978 Gm26851 - predicted gene, 26851 ncRNA 0.000000 0.378109 -33(ATTTGAAAGACAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2864 chr5 111133955 111134155 + -1.01918 NA intron (NM_001267622, intron 5 of 22) intron (NM_001267622, intron 5 of 22) 129911 NR_030482 735278 NR_030482 ENSMUSG00000076163 Mir701 Mirn701|mir-701|mmu-mir-701 microRNA 701 ncRNA 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3579 chr9 79896067 79896267 + -1.01918 NA intron (NM_001357353, intron 2 of 5) RLTR12B|LTR|ERVK -65185 NM_001357354 70598 Mm.23049 NM_001081243 ENSMUSG00000034898 Filip1 5730485H21Rik|AI843021 filamin A interacting protein 1 protein-coding 0.020000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-908 chr13 17689841 17690041 + -1.01918 NA intron (NM_138654, intron 1 of 13) intron (NM_138654, intron 1 of 13) 4824 NM_138654 192136 Mm.364180 NM_138654 ENSMUSG00000055137 Sugct 5033411D12Rik|D17907 succinyl-CoA glutarate-CoA transferase protein-coding 0.000000 0.393035 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-498 chr7 75447081 75447281 + -1.01918 NA Intergenic Intergenic -8353 NM_029332 75547 Mm.216107 NM_029332 ENSMUSG00000066406 Akap13 1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC A kinase (PRKA) anchor protein 13 protein-coding 0.005000 0.338308 70(CATTTCTCATGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3511 chr9 31814284 31814484 + -1.01918 NA Intergenic Lx7|LINE|L1 98901 NM_013800 12023 Mm.261044 NM_013800 ENSMUSG00000032033 Barx2 2310006E12Rik|Barx2b BarH-like homeobox 2 protein-coding 0.010000 0.368159 -21(CCATGGTTATTCAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2139 chr2 137280581 137280781 + -1.01918 NA Intergenic L1MEc|LINE|L1 -164161 NM_013822 16449 Mm.22398 NM_013822 ENSMUSG00000027276 Jag1 ABE2|Gsfabe2|Htu|Ozz|Ser-1 jagged 1 protein-coding 0.000000 0.278607 -8(TCTTTTTTTTTCAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3116 chr7 54447572 54447772 + -1.01918 NA Intergenic L1MD|LINE|L1 -387573 NM_178705 233271 Mm.387344 NM_178705 ENSMUSG00000063297 Luzp2 9330154K17Rik|D130073E01 leucine zipper protein 2 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-306 chr1 185149309 185149509 + -1.01918 NA Intergenic Intergenic -54759 NM_001163754 98732 Mm.275841 NM_172649 ENSMUSG00000039318 Rab3gap2 1110059F07Rik|2010002H18Rik|5830469C09|AI851069|AW743433|RAB3-GAP150|mKIAA0839 RAB3 GTPase activating protein subunit 2 protein-coding 0.000000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3118 chr7 56707947 56708147 + -1.02006 NA Intergenic MER67B|LTR|ERV1 468288 NM_021879 18431 Mm.137052 NM_021879 ENSMUSG00000030450 Oca2 D7H15S12|D7Icr28RN|D7Nic1|p|p oculocutaneous albinism II protein-coding 0.010000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3289 chr8 20905157 20905357 + -1.02076 NA Intergenic Intergenic -2801 NM_001177471 100504014 Mm.490239 NM_001177471 ENSMUSG00000082976 Gm15056 Defb52 predicted gene 15056 protein-coding 0.025000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-564 chr11 18981211 18981411 + -1.02076 NA intron (NM_001193271, intron 7 of 12) intron (NM_001193271, intron 7 of 12) 37658 NM_010789 17268 Mm.356578 NM_010789 ENSMUSG00000020160 Meis1 C530044H18Rik|Evi8 Meis homeobox 1 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1830 chr19 10323506 10323706 + -1.02076 NA Intergenic Intergenic -18729 NM_198114 269060 Mm.329718 NM_198114 ENSMUSG00000035735 Dagla Nsddr diacylglycerol lipase, alpha protein-coding 0.020000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2289 chr3 63317575 63317775 + -1.02076 NA intron (NM_008604, intron 3 of 22) intron (NM_008604, intron 3 of 22) 21580 NM_001289463 17380 Mm.296022 NM_008604 ENSMUSG00000027820 Mme 6030454K05Rik|C85356|CALLA|CD10|NEP|SFE membrane metallo endopeptidase protein-coding 0.005000 0.462687 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-262 chr18 4761582 4761782 + -1.02076 NA Intergenic Intergenic -50804 NR_045881 100038439 Mm.387569 NR_045881 ENSMUSG00000097043 Gm10556 - predicted gene 10556 ncRNA 0.025000 0.422886 -47(CTTAGCATTATAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-19 chr1 14374098 14374298 + -1.02076 NA Intergenic Intergenic -63999 NM_001310459 14048 Mm.250185 NM_010164 ENSMUSG00000025932 Eya1 bor EYA transcriptional coactivator and phosphatase 1 protein-coding 0.005000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-700 chr11 106228744 106228944 + -1.02076 NA intron (NM_001361643, intron 4 of 16) intron (NM_001361643, intron 4 of 16) -1822 NM_001361644 72047 Mm.41367 NM_028074 ENSMUSG00000020705 Ddx42 1810047H21Rik|AW319508|AW556242|B430002H05Rik|RHELP|RNAHP|SF3b125 DEAD (Asp-Glu-Ala-Asp) box polypeptide 42 protein-coding 0.005000 0.328358 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-539 chr8 109462502 109462702 + -1.02076 NA Intergenic Intergenic -31425 NM_019938 56523 Mm.42166 NM_019938 ENSMUSG00000031727 Pmfbp1 1700016D22Rik|F77|Stap polyamine modulated factor 1 binding protein 1 protein-coding 0.005000 0.467662 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-365 chr3 80661990 80662190 + -1.02076 NA Intergenic Intergenic 140745 NR_152148 14800 Mm.220224 NM_013540 ENSMUSG00000033981 Gria2 GluA2|GluR-B|Glur-2|Glur2|gluR-K2 glutamate receptor, ionotropic, AMPA2 (alpha 2) protein-coding 0.010000 0.388060 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-422 chr5 10782354 10782554 + -1.02076 NA Intergenic RMER6C|LTR|ERVK -82575 NR_003596 623849 Mm.335888 NR_003596 ENSMUSG00000091422 Gm6455 EG623849 predicted gene 6455 pseudo 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1536 chr16 84681040 84681240 + -1.02076 NA intron (NR_040537, intron 1 of 2) intron (NR_040537, intron 1 of 2) 1351 NR_040537 78023 Mm.243853 NR_040537 4930529L06Rik - RIKEN cDNA 4930529L06 gene ncRNA 0.010000 0.333333 -39(CTTTTGTAAAGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3434 chr8 109462452 109462652 + -1.02076 NA Intergenic Intergenic -31475 NM_019938 56523 Mm.42166 NM_019938 ENSMUSG00000031727 Pmfbp1 1700016D22Rik|F77|Stap polyamine modulated factor 1 binding protein 1 protein-coding 0.005000 0.447761 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-90 chr11 9194904 9195104 + -1.02076 NA intron (NM_178259, intron 1 of 61) intron (NM_178259, intron 1 of 61) 3062 NM_178259 268379 Mm.39270 NM_178259 ENSMUSG00000004668 Abca13 9830132L24|A930002G16Rik|AI956815 ATP-binding cassette, sub-family A (ABC1), member 13 protein-coding 0.015000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2723 chr5 10782351 10782551 + -1.02076 NA Intergenic RMER6C|LTR|ERVK -82578 NR_003596 623849 Mm.335888 NR_003596 ENSMUSG00000091422 Gm6455 EG623849 predicted gene 6455 pseudo 0.000000 0.363184 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-544 chr8 118403305 118403505 + -1.02076 NA intron (NM_019707, intron 1 of 13) intron (NM_019707, intron 1 of 13) 119794 NM_019707 12554 Mm.334841 NM_019707 ENSMUSG00000031841 Cdh13 4932416G01Rik|Cdht|Tcad cadherin 13 protein-coding 0.000000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2865 chr5 111134186 111134386 + -1.02076 NA intron (NM_001267622, intron 5 of 22) intron (NM_001267622, intron 5 of 22) 130142 NR_030482 735278 NR_030482 ENSMUSG00000076163 Mir701 Mirn701|mir-701|mmu-mir-701 microRNA 701 ncRNA 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3734 chrX 115349567 115349767 + -1.02076 NA Intergenic Intergenic -368282 NM_001370953 664969 NM_001370953 Gm7429 EG664969 predicted pseudogene 7429 protein-coding 0.005000 0.258706 -75(GCATTCTAATTGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-186 chr1 108088503 108088703 + -1.02076 NA Intergenic Intergenic 171344 NR_102307 319596 Mm.136054 NR_102306 ENSMUSG00000100457 D830032E09Rik - RIKEN cDNA D830032E09 gene ncRNA 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1180 chr14 93029724 93029924 + -1.02076 NA intron (NM_001081377, intron 4 of 4) MER5A1|DNA|hAT-Charlie 860845 NM_001271799 211712 Mm.37126 NM_001081377 ENSMUSG00000055421 Pcdh9 - protocadherin 9 protein-coding 0.005000 0.333333 -22(CCACTGCTTTTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3451 chr8 119304491 119304691 + -1.02209 NA intron (NM_019707, intron 11 of 13) intron (NM_019707, intron 11 of 13) -39947 NM_024219 68196 Mm.358714 NM_024219 ENSMUSG00000031839 Hsbp1 0610007A03Rik|AA408769|Hsp25 heat shock factor binding protein 1 protein-coding 0.015000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2356 chr3 98032386 98032586 + -1.02209 NA intron (NM_010928, intron 1 of 33) intron (NM_010928, intron 1 of 33) 18948 NM_010928 18129 Mm.485843 NM_010928 ENSMUSG00000027878 Notch2 AI853703|N2 notch 2 protein-coding 0.010000 0.442786 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-171 chr14 67120553 67120753 + -1.02209 NA Intergenic Intergenic -48182 NM_001205188 71978 Mm.273997 NM_028032 ENSMUSG00000022052 Ppp2r2a 2410004D02Rik|mKIAA1541 protein phosphatase 2, regulatory subunit B, alpha protein-coding 0.040000 0.577114 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1137 chr14 67120539 67120739 + -1.02209 NA Intergenic Intergenic -48168 NM_001205188 71978 Mm.273997 NM_028032 ENSMUSG00000022052 Ppp2r2a 2410004D02Rik|mKIAA1541 protein phosphatase 2, regulatory subunit B, alpha protein-coding 0.040000 0.582090 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-438 chr5 72464039 72464239 + -1.02209 NA intron (NM_016869, intron 2 of 21) intron (NM_016869, intron 2 of 21) 40069 NM_016869 53419 Mm.332425 NM_016869 ENSMUSG00000005220 Corin AV273130|Lrp4 corin, serine peptidase protein-coding 0.000000 0.338308 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-513 chr8 7841974 7842174 + -1.02209 NA Intergenic Intergenic 819168 NM_001368299 13642 Mm.209813 NM_010111 ENSMUSG00000001300 Efnb2 ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1 ephrin B2 protein-coding 0.000000 0.338308 -14(ATTTGAATGACAACAG,-,0.00),68(ATTTGCAAGTGAGAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3677 chrX 15057915 15058115 + -1.02237 NA Intergenic Intergenic 53474 NR_033171 67395 Mm.50369 NM_026128 ENSMUSG00000045217 Ppp1r2-ps9 4930403L05Rik protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9 pseudo 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-430 chr10 59642711 59642911 + -1.02237 NA Intergenic Intergenic -26119 NM_001033259 215999 Mm.296470 NM_001033259 ENSMUSG00000009647 Mcu 2010012O16Rik|AV064928|C10orf42|Ccdc109a|D130073L02Rik|Gm64 mitochondrial calcium uniporter protein-coding 0.010000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2187 chr2 164286923 164287123 + -1.02237 NA Intergenic Intergenic -2244 NM_001311114 64335 Mm.389393 NM_021363 ENSMUSG00000017003 Svs3a 9530026M05Rik|BB121242|Semg2|Svp-3|Svp3|Svs3 seminal vesicle secretory protein 3A protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3242 chr7 135172605 135172805 + -1.02237 NA 3' UTR (NM_001033420, exon 52 of 52) 3' UTR (NM_001033420, exon 52 of 52) 23297 NR_046050 74314 Mm.415339 NR_046050 ENSMUSG00000100717 1700120G07Rik - RIKEN cDNA 1700120G07 gene ncRNA 0.015000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2991 chr6 67412319 67412519 + -1.02237 NA Intergenic L1_Mus3|LINE|L1 -36231 NM_008354 16162 Mm.188337 NM_008354 ENSMUSG00000018341 Il12rb2 A930027I18Rik|IL-12RB2|Ifnm interleukin 12 receptor, beta 2 protein-coding 0.010000 0.398010 24(GTTTTGTCATGGAATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3290 chr8 22251201 22251401 + -1.02237 NA intron (NM_001293688, intron 3 of 3) intron (NM_001293688, intron 3 of 3) 23998 NM_001205253 56229 Mm.32067 NM_019576 ENSMUSG00000031480 Thsd1 4833423O18Rik|Tmtsp thrombospondin, type I, domain 1 protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-467 chr10 84318083 84318283 + -1.02237 NA Intergenic Intergenic 122485 NM_001004363 77976 Mm.25874 NM_001004363 ENSMUSG00000020032 Nuak1 AU014801|AW494241|B230104P22Rik|Omphk1 NUAK family, SNF1-like kinase, 1 protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1385 chr15 93162183 93162383 + -1.02237 NA Intergenic Intergenic 112896 NM_001033275 223827 Mm.22819 NM_001033275 ENSMUSG00000036197 Gxylt1 Glt8d3|Gm1228|Gm87 glucoside xylosyltransferase 1 protein-coding 0.040000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1061 chr14 11221066 11221266 + -1.02237 NA Intergenic Intergenic -59131 NM_010210 14198 Mm.397619 NM_010210 ENSMUSG00000060579 Fhit AW045638|Fra14A2 fragile histidine triad gene protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2828 chr5 86778223 86778423 + -1.02237 NA Intergenic Lx7|LINE|L1 -25943 NR_153372 231386 Mm.196325 NM_177680 ENSMUSG00000035851 Ythdc1 A730098D12Rik|C80342|mKIAA1966 YTH domain containing 1 protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1869 chr19 30283118 30283318 + -1.02237 NA Intergenic Intergenic 50290 NM_010776 17195 Mm.30045 NM_010776 ENSMUSG00000024863 Mbl2 L-MBP|MBL|MBL-C|MBP-C|RARF/P28A mannose-binding lectin (protein C) 2 protein-coding 0.015000 0.358209 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-554 chr9 25715967 25716167 + -1.02237 NA Intergenic Intergenic 234470 NM_026189 67484 Mm.112977 NM_026189 ENSMUSG00000036611 Eepd1 2310005P05Rik|AI481005 endonuclease/exonuclease/phosphatase family domain containing 1 protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-544 chr11 5855535 5855735 + -1.02237 NA Intergenic Intergenic -6231 NM_001291857 11568 Mm.3317 NM_009636 ENSMUSG00000020473 Aebp1 ACLP AE binding protein 1 protein-coding 0.000000 0.472637 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-530 chr8 78314954 78315154 + -1.02237 NA intron (NM_183096, intron 9 of 13) intron (NM_183096, intron 9 of 13) 101712 NM_183096 73301 Mm.61243 NM_183096 ENSMUSG00000037101 Ttc29 1700031F13Rik tetratricopeptide repeat domain 29 protein-coding 0.010000 0.427861 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-454 chr5 149513941 149514141 + -1.02240 NA intron (NR_045423, intron 1 of 4) intron (NR_045423, intron 1 of 4) -14638 NM_029440 381693 Mm.136919 NM_029440 ENSMUSG00000029658 Wdr95 4930434E21Rik WD40 repeat domain 95 protein-coding 0.015000 0.477612 5(GGTTTGTTTTGTAATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-732 chr12 11707356 11707556 + -1.02398 NA Intergenic Intergenic 175443 NR_003964 627110 Mm.194735 NR_003964 Tubb2a-ps2 C79445 tubulin, beta 2a, pseudogene 2 pseudo 0.000000 0.333333 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-310 chr2 27635605 27635805 + -1.02398 NA Intergenic Intergenic -41496 NM_011305 20181 Mm.24624 NM_011305 ENSMUSG00000015846 Rxra 9530071D11Rik|Nr2b1|RXRalpha1 retinoid X receptor alpha protein-coding 0.040000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1970 chr2 27635490 27635690 + -1.02398 NA Intergenic Intergenic -41611 NM_011305 20181 Mm.24624 NM_011305 ENSMUSG00000015846 Rxra 9530071D11Rik|Nr2b1|RXRalpha1 retinoid X receptor alpha protein-coding 0.040000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2435 chr3 127107407 127107607 + -1.02398 NA intron (NM_001327938, intron 1 of 47) intron (NM_001327938, intron 1 of 47) -53798 NR_105029 100862268 Mm.444603 NR_105029 ENSMUSG00000097456 LOC100862268 - uncharacterized LOC100862268 ncRNA 0.015000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-965 chr13 56026342 56026542 + -1.02398 NA Intergenic Intergenic 109108 NM_001159515 26914 Mm.283802 NM_012015 ENSMUSG00000015937 H2afy H2AF12M|mH2a1|macroH2A1 H2A histone family, member Y protein-coding 0.020000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1390 chr15 94346973 94347173 + -1.02407 NA intron (NM_177431, intron 12 of 38) intron (NM_177431, intron 12 of 38) 57277 NM_177431 223838 Mm.214132 NM_177431 ENSMUSG00000022449 Adamts20 Adamst20|bt a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 20 protein-coding 0.020000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-186 chr15 7037579 7037779 + -1.02407 NA Intergenic Intergenic -91893 NM_001358593 16880 Mm.149720 NM_013584 ENSMUSG00000054263 Lifr A230075M04Rik|AW061234|LIF LIF receptor alpha protein-coding 0.025000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1241 chr15 7037617 7037817 + -1.02407 NA Intergenic Intergenic -91855 NM_001358593 16880 Mm.149720 NM_013584 ENSMUSG00000054263 Lifr A230075M04Rik|AW061234|LIF LIF receptor alpha protein-coding 0.030000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3449 chr8 114216001 114216201 + -1.02407 NA intron (NM_173016, intron 1 of 8) intron (NM_173016, intron 1 of 8) 10461 NM_173016 270097 Mm.334825 NM_173016 ENSMUSG00000046844 Vat1l 9430073I07|AI427515|mKIAA1576 vesicle amine transport protein 1 like protein-coding 0.000000 0.427861 -48(TTTTTTTCTTTCTGAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-385 chr3 141252132 141252332 + -1.02407 NA Intergenic Intergenic -39877 NM_008811 18598 Mm.4223 NM_008811 ENSMUSG00000047674 Pdha2 Pdhal pyruvate dehydrogenase E1 alpha 2 protein-coding 0.005000 0.373134 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-405 chr4 70576655 70576855 + -1.02471 NA Intergenic RLTR14-int|LTR|ERV1 -41827 NM_172694 230316 Mm.251188 NM_172694 ENSMUSG00000039270 Megf9 4933405H16Rik|9630025C07|Egfl5|mKIAA0818 multiple EGF-like-domains 9 protein-coding 0.000000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3301 chr8 27367042 27367242 + -1.02471 NA Intergenic Intergenic -1569 NM_027454 108043 Mm.110444 NM_027454 ENSMUSG00000031492 Chrnb3 5730417K16Rik|Acrb3 cholinergic receptor, nicotinic, beta polypeptide 3 protein-coding 0.005000 0.313433 66(TATTTCATATGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-448 chr10 71906286 71906486 + -1.02559 NA Intergenic Intergenic 74319 NR_003644 108950 Mm.212793 NM_175390 1700049L16Rik - hematological and neurological expressed 1-like pseudogene pseudo 0.010000 0.368159 30(TTATTATGATTCAAAA,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-584 chrX 163308304 163308504 + -1.02559 NA intron (NR_038088, intron 1 of 5) intron (NR_038088, intron 1 of 5) 44160 NR_038088 100568459 NR_038088 ENSMUSG00000115783 Bc1 Gm24367 brain cytoplasmic RNA 1 ncRNA 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-905 chr13 16636516 16636716 + -1.02559 NA Intergenic Intergenic -613193 NR_155430 100503142 Mm.359204 NR_155430 B230303A05Rik B230303A05|EG328191 U1 small nuclear ribonucleoprotein 1C pseudogene pseudo 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1482 chr16 56853016 56853216 + -1.02559 NA intron (NM_019631, intron 1 of 5) intron (NM_019631, intron 1 of 5) 33047 NM_019631 56277 Mm.262328 NM_019631 ENSMUSG00000022754 Tmem45a C630002M10Rik|M32486|p19.5 transmembrane protein 45a protein-coding 0.010000 0.447761 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-169 chr14 65221887 65222087 + -1.02559 NA intron (NM_021458, intron 4 of 6) intron (NM_021458, intron 4 of 6) 40476 NM_021458 14365 Mm.214687 NM_021458 ENSMUSG00000007989 Fzd3 AU020229|D930050A07Rik|Fz3 frizzled class receptor 3 protein-coding 0.000000 0.318408 -87(CTTAGAATAAGAAAGG,-,0.00),-14(TTTGTCTTTTTCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-564 chr9 69274863 69275063 + -1.02559 NA intron (NM_013646, intron 2 of 10) intron (NM_013646, intron 2 of 10) -14878 NM_001289916 19883 Mm.378450 NM_013646 ENSMUSG00000032238 Rora 9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26 RAR-related orphan receptor alpha protein-coding 0.010000 0.412935 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-10 chr1 47561462 47561662 + -1.02559 NA Intergenic Intergenic -94437 NR_105768 102466969 NR_105768 ENSMUSG00000098876 Mir6350 Gm27958|mmu-mir-6350 microRNA 6350 ncRNA 0.000000 0.393035 30(CATTTATTATGGAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1210 chr14 113826945 113827145 + -1.02559 NA Intergenic ORR1E|LTR|ERVL-MaLR -1004920 NR_045661 75822 Mm.410813 NR_045661 ENSMUSG00000115320 4930524C18Rik - RIKEN cDNA 4930524C18 gene ncRNA 0.005000 0.373134 29(GTATTATTTTGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1570 chr17 7258895 7259095 + -1.02559 NA intron (NM_011299, intron 8 of 20) intron (NM_011299, intron 8 of 20) -65665 NR_046291 21461 Mm.264651 NM_011553 ENSMUSG00000071322 Tcp10a D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a t-complex protein 10a protein-coding 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3566 chr9 69274844 69275044 + -1.02559 NA intron (NM_013646, intron 2 of 10) intron (NM_013646, intron 2 of 10) -14897 NM_001289916 19883 Mm.378450 NM_013646 ENSMUSG00000032238 Rora 9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26 RAR-related orphan receptor alpha protein-coding 0.010000 0.437811 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-324 chr2 92067088 92067288 + -1.02559 NA Intergenic ORSL-2b|DNA|hAT-Tip100 -43018 NM_011957 26427 Mm.10353 NM_011957 ENSMUSG00000027230 Creb3l1 Oasis cAMP responsive element binding protein 3-like 1 protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2646 chr4 96004974 96005174 + -1.02559 NA intron (NM_030014, intron 12 of 21) L1M2|LINE|L1 -37419 NR_045776 319247 Mm.473527 NM_175680 ENSMUSG00000044125 9530080O11Rik - RIKEN cDNA 9530080O11 gene ncRNA 0.010000 0.343284 -3(TCATTCTTTTGTAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1107 chr14 46223153 46223353 + -1.02559 NA Intergenic Intergenic 139226 NR_002875 218963 Mm.282093 NR_002875 Gm1821 - ubiquitin pseudogene pseudo 0.015000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2297 chr3 65380041 65380241 + -1.02559 NA 3' UTR (NM_026155, exon 5 of 5) 3' UTR (NM_026155, exon 5 of 5) 12412 NM_026155 67437 Mm.232728 NM_026155 ENSMUSG00000027828 Ssr3 0610038P07Rik|AL022999|AU022074|AW553833|TRAPG signal sequence receptor, gamma protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1132 chr14 65221881 65222081 + -1.02559 NA intron (NM_021458, intron 4 of 6) intron (NM_021458, intron 4 of 6) 40482 NM_021458 14365 Mm.214687 NM_021458 ENSMUSG00000007989 Fzd3 AU020229|D930050A07Rik|Fz3 frizzled class receptor 3 protein-coding 0.005000 0.333333 -81(CTTAGAATAAGAAAGG,-,0.00),-8(TTTGTCTTTTTCAAAT,+,0.00) merged_common-2 chrX 141888229 141888429 + -1.02559 NA Intergenic Intergenic -163112 NM_010572 16370 Mm.261591 NM_010572 ENSMUSG00000054667 Irs4 IRS-4 insulin receptor substrate 4 protein-coding 0.005000 0.383085 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-167 chr14 63653172 63653372 + -1.02559 NA intron (NM_173393, intron 1 of 2) intron (NM_173393, intron 1 of 2) 46742 NM_173393 219149 Mm.32071 NM_173393 ENSMUSG00000035067 Xkr6 2700008G24Rik|BC024502|Xrg6 X-linked Kx blood group related 6 protein-coding 0.005000 0.502488 -40(ATTAACATAACAACAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1671 chr18 4808175 4808375 + -1.02559 NA Intergenic Intergenic -4211 NR_045881 100038439 Mm.387569 NR_045881 ENSMUSG00000097043 Gm10556 - predicted gene 10556 ncRNA 0.000000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1713 chr18 30413313 30413513 + -1.02599 NA Intergenic Intergenic 140548 NM_181414 225326 Mm.194127 NM_181414 ENSMUSG00000033628 Pik3c3 5330434F23Rik|Vps34 phosphatidylinositol 3-kinase catalytic subunit type 3 protein-coding 0.010000 0.412935 43(TGTGCATTTGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2470 chr3 143713294 143713494 + -1.02599 NA Intergenic Intergenic -1251 NR_040405 621809 Mm.360134 NR_040405 ENSMUSG00000105279 Gm6260 EG621809 predicted gene 6260 ncRNA 0.010000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1181 chr14 93541130 93541330 + -1.02657 NA intron (NM_001271798, intron 2 of 3) intron (NM_001271798, intron 2 of 3) 349439 NM_001271799 211712 Mm.37126 NM_001081377 ENSMUSG00000055421 Pcdh9 - protocadherin 9 protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3312 chr8 35370593 35370793 + -1.02719 NA Intergenic Intergenic -5066 NM_177741 244416 Mm.247126 NM_177741 ENSMUSG00000046794 Ppp1r3b 6430576E21|AW821953|GL|PTG protein phosphatase 1, regulatory subunit 3B protein-coding 0.020000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2102 chr2 117637499 117637699 + -1.02719 NA Intergenic L1ME1|LINE|L1 175203 NR_126427 100504728 Mm.413174 NR_126427 Gm13985 - predicted gene 13985 ncRNA 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3221 chr7 123155296 123155496 + -1.02719 NA intron (NM_144925, intron 4 of 23) L1MA7|LINE|L1 31511 NM_144925 233833 Mm.102305 NM_144925 ENSMUSG00000052707 Tnrc6a 2010321I05Rik|3110054G10Rik|AW557223|CAGH26|D130023A07Rik|GW182|Tnrc6 trinucleotide repeat containing 6a protein-coding 0.005000 0.373134 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-357 chr3 67515505 67515705 + -1.02719 NA promoter-TSS (NM_001164763) promoter-TSS (NM_001164763) -82 NM_001164763 109222 Mm.38002 NM_001164763 ENSMUSG00000049404 Rarres1 5430417P09Rik|AI662122 retinoic acid receptor responder (tazarotene induced) 1 protein-coding 0.075000 0.676617 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2433 chr3 126611158 126611358 + -1.02719 NA intron (NM_001025438, intron 2 of 18) intron (NM_001025438, intron 2 of 18) 14307 NM_023813 108058 Mm.255822 NM_023813 ENSMUSG00000053819 Camk2d 2810011D23Rik|8030469K03Rik|CaMK II|[d]-CaMKII calcium/calmodulin-dependent protein kinase II, delta protein-coding 0.015000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-292 chr19 30924222 30924422 + -1.02719 NA intron (NM_001013833, intron 4 of 17) intron (NM_001013833, intron 4 of 17) 6640 NR_033643 625995 Mm.454508 NR_033643 Gm6642 EG625995 ubiquitin-like 5 pseudogene pseudo 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3413 chr8 96027537 96027737 + -1.02719 NA Intergenic L1MB3|LINE|L1 -139236 NM_010325 14719 Mm.230169 NM_010325 ENSMUSG00000031672 Got2 AL022787|FABP-pm|Got-2|Kyat4|mAspAT glutamatic-oxaloacetic transaminase 2, mitochondrial protein-coding 0.000000 0.333333 32(ATATAAATAACTAAGG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-110 chr11 120437216 120437416 + -1.02719 NA intron (NM_199469, intron 1 of 15) CpG 384 NM_001195023 217365 Mm.309520 NM_199469 ENSMUSG00000039703 Nploc4 AK129375|Npl4|mKIAA1499 NPL4 homolog, ubiquitin recognition factor protein-coding 0.090000 0.701493 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-561 chr9 63797517 63797717 + -1.02719 NA Intergenic L1MA4|LINE|L1 -39623 NM_016769 17127 Mm.7320 NM_016769 ENSMUSG00000032402 Smad3 AU022421|Madh3 SMAD family member 3 protein-coding 0.010000 0.422886 -21(ATTTGAATGAATAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1629 chr17 67129426 67129626 + -1.02719 NA intron (NM_008984, intron 2 of 30) intron (NM_008984, intron 2 of 30) -103291 NR_049205 100885844 NR_049205 ENSMUSG00000093508 Mir5709 Gm22041|mir-5709|mmu-mir-5709 microRNA 5709 ncRNA 0.020000 0.402985 -62(ATTTCCATGACACAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-280 chr1 168699255 168699455 + -1.02786 NA Intergenic L1M2|LINE|L1 208712 NR_105766 102465178 NR_105766 ENSMUSG00000098407 Mir6348 Gm27412|mmu-mir-6348 microRNA 6348 ncRNA 0.000000 0.368159 -62(ACTTTCTATTGCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-389 chr3 155358480 155358680 + -1.02838 NA Intergenic Intergenic 265146 NM_028938 74435 Mm.195711 NM_028938 ENSMUSG00000028182 Lrriq3 4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44 leucine-rich repeats and IQ motif containing 3 protein-coding 0.010000 0.407960 -25(ATTTGCACTACAGAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2499 chr3 155358468 155358668 + -1.02838 NA Intergenic Intergenic 265134 NM_028938 74435 Mm.195711 NM_028938 ENSMUSG00000028182 Lrriq3 4930438B07Rik|4930511J15Rik|4933403H06Rik|BB020367|Lrrc44 leucine-rich repeats and IQ motif containing 3 protein-coding 0.010000 0.373134 -13(ATTTGCACTACAGAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-895 chr13 12311987 12312187 + -1.02879 NA intron (NM_033268, intron 1 of 20) intron (NM_033268, intron 1 of 20) 28645 NM_033268 11472 Mm.37638 NM_033268 ENSMUSG00000052374 Actn2 1110008F24Rik actinin alpha 2 protein-coding 0.010000 0.432836 -4(GCCCTGTCATGTTAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-426 chr5 19105013 19105213 + -1.02879 NA Intergenic Lx7|LINE|L1 121442 NR_102341 70832 Mm.398993 NR_102341 ENSMUSG00000097626 4921504A21Rik - RIKEN cDNA 4921504A21 gene ncRNA 0.010000 0.412935 -15(AATACATATGCAAA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-395 chr4 40488098 40488298 + -1.02879 NA intron (NR_040644, intron 5 of 6) MLT1A1|LTR|ERVL-MaLR 15068 NM_001166009 320500 Mm.156365 NM_177175 ENSMUSG00000046593 Tmem215 A930001M12Rik transmembrane protein 215 protein-coding 0.010000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1871 chr19 30924329 30924529 + -1.02879 NA intron (NM_001013833, intron 4 of 17) intron (NM_001013833, intron 4 of 17) 6533 NR_033643 625995 Mm.454508 NR_033643 Gm6642 EG625995 ubiquitin-like 5 pseudogene pseudo 0.005000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-316 chr2 57819830 57820030 + -1.02879 NA Intergenic Intergenic -178225 NM_172855 241391 Mm.484118 NM_172855 ENSMUSG00000026828 Galnt5 4832424J23 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-404 chr10 45468881 45469081 + -1.02879 NA intron (NM_001031772, intron 2 of 4) intron (NM_001031772, intron 2 of 4) 1220 NM_001031772 380669 Mm.440328 NM_001031772 ENSMUSG00000063804 Lin28b 2810403D23Rik|D030047M17Rik|Lin-28.2 lin-28 homolog B (C. elegans) protein-coding 0.015000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-745 chr12 24635511 24635711 + -1.02879 NA Intergenic Intergenic -15760 NM_178357 194655 Mm.9616 NM_178357 ENSMUSG00000020653 Klf11 9830142A17|D12Ertd427e|Tieg2|Tieg2b|Tieg3 Kruppel-like factor 11 protein-coding 0.005000 0.328358 10(CTGTAATCATTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2294 chr3 64887674 64887874 + -1.02879 NA Intergenic Intergenic -43031 NR_003962 319210 Mm.246646 NM_175670 ENSMUSG00000097538 Vmn2r-ps11 4930518C23Rik vomeronasal 2, receptor, pseudogene 11 pseudo 0.015000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2393 chr3 115724221 115724421 + -1.02879 NA Intergenic L1_Mur3|LINE|L1 -9266 NM_007901 13609 Mm.982 NM_007901 ENSMUSG00000045092 S1pr1 AI849002|Edg1|Lpb1|S1p|S1p1 sphingosine-1-phosphate receptor 1 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1874 chr19 32304311 32304511 + -1.03012 NA intron (NM_001362423, intron 2 of 9) intron (NM_001362423, intron 2 of 9) 44905 NM_001168525 208449 Mm.329810 NM_144792 ENSMUSG00000040451 Sgms1 9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23 sphingomyelin synthase 1 protein-coding 0.005000 0.378109 38(CTTAGCATGACAAGTT,-,0.00),81(TCATTATTATGCATAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-312 chr1 187813454 187813654 + -1.03037 NA intron (NM_001357534, intron 2 of 7) intron (NM_001357534, intron 2 of 7) 161313 NM_001357535 26381 Mm.89989 NM_011935 ENSMUSG00000026610 Esrrg ERR3|Errg|NR3B3|mKIAA0832 estrogen-related receptor gamma protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3404 chr8 89812111 89812311 + -1.03037 NA Intergenic Intergenic 536041 NM_172913 244579 Mm.302755 NM_172913 ENSMUSG00000043668 Tox3 500-9|BC052044|C230068E13|CAGF9|Tnrc9 TOX high mobility group box family member 3 protein-coding 0.010000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-132 chr1 74828822 74829022 + -1.03037 NA Intergenic L1M5|LINE|L1 -21973 NR_151618 102634844 Mm.288703 NR_151618 Gm16582 - predicted gene 16582 ncRNA 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3183 chr7 95141282 95141482 + -1.03037 NA Intergenic Intergenic -1029862 NM_001310762 23966 Mm.254610 NM_011858 ENSMUSG00000048078 Tenm4 Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302 teneurin transmembrane protein 4 protein-coding 0.000000 0.328358 14(ATTAACAAAAGAAGAA,-,0.00),71(CCTTGGACATGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2274 chr3 56956100 56956300 + -1.03037 NA Intergenic L1M5|LINE|L1 345788 NM_008536 17112 Mm.856 NM_008536 ENSMUSG00000027800 Tm4sf1 L6|M3s1 transmembrane 4 superfamily member 1 protein-coding 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1174 chr14 86700263 86700463 + -1.03037 NA intron (NM_019670, intron 27 of 27) intron (NM_019670, intron 27 of 27) 440861 NM_019670 56419 Mm.440585 NM_019670 ENSMUSG00000022021 Diaph3 4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2 diaphanous related formin 3 protein-coding 0.000000 0.323383 70(CTTTACATAAGAAAGG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-323 chr2 90403062 90403262 + -1.03145 NA Intergenic Intergenic 2522 NM_146263 258330 Mm.330392 NM_146263 ENSMUSG00000082980 Olfr1274-ps GA_x5J8B7W2BV0-3116-4045|MOR228-4|MOR228-5|Olfr1274 olfactory receptor 1274, pseudogene protein-coding 0.005000 0.343284 65(TATACAATATGCATG,+,0.00),65(TATACAATATGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-892 chr13 11432925 11433125 + -1.03193 NA Intergenic MER5B|DNA|hAT-Charlie -89027 NR_027813 664793 Mm.410565 NR_027813 ENSMUSG00000113593 Zp4-ps EG664793|Zp4|Zpb zona pellucida glycoprotein 4, pseudogene pseudo 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-406 chr10 46006430 46006630 + -1.03193 NA Intergenic Intergenic 198826 NR_040624 320363 Mm.123343 NR_040624 ENSMUSG00000110874 D030045P18Rik - RIKEN cDNA D030045P18 gene ncRNA 0.005000 0.388060 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-325 chr2 95442178 95442378 + -1.03193 NA Intergenic Intergenic -875891 NM_001289742 241568 Mm.241682 NM_178725 ENSMUSG00000050587 Lrrc4c 6430556C10Rik|NGL-1 leucine rich repeat containing 4C protein-coding 0.010000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3011 chr6 81446332 81446532 + -1.03193 NA Intergenic Intergenic 449231 NR_106091 102465711 NR_106091 ENSMUSG00000106154 Mir7232 mmu-mir-7232 microRNA 7232 ncRNA 0.000000 0.402985 -26(TCTTATTCATGCAATT,+,0.00),76(TCTTTTTCTTACAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-466 chr6 30236704 30236904 + -1.03193 NA intron (NM_001169576, intron 3 of 4) intron (NM_001169576, intron 3 of 4) 6999 NM_001169577 22214 Mm.332967 NM_009459 ENSMUSG00000039159 Ube2h 1500009C23Rik|AI181839|AI326965|AI462483|AW227540|E2-20K|Gid3|N28148|Ubc8 ubiquitin-conjugating enzyme E2H protein-coding 0.000000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-714 chr11 117302027 117302227 + -1.03193 NA intron (NM_001113486, intron 3 of 11) intron (NM_001113486, intron 3 of 11) -29588 NM_017380 53860 Mm.38450 NM_017380 ENSMUSG00000059248 Sept9 MSF1|Msf|PNUTL4|Sint1 septin 9 protein-coding 0.015000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-608 chr11 44975168 44975368 + -1.03193 NA intron (NM_001362579, intron 12 of 16) intron (NM_001362579, intron 12 of 16) 141660 NR_045100 100504255 Mm.123608 NR_045100 ENSMUSG00000084773 Gm12159 - predicted gene 12159 ncRNA 0.005000 0.552239 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-248 chr17 17408321 17408521 + -1.03318 NA intron (NM_025681, intron 1 of 5) intron (NM_025681, intron 1 of 5) 5735 NM_025681 66643 Mm.268018 NM_025681 ENSMUSG00000047786 Lix1 5730466L18Rik limb and CNS expressed 1 protein-coding 0.010000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2852 chr5 98553268 98553468 + -1.03318 NA intron (NM_001024614, intron 3 of 5) intron (NM_001024614, intron 3 of 5) -77704 NR_030484 735265 NR_030484 ENSMUSG00000105814 Mir703 Mirn703|mir-703|mmu-mir-703 microRNA 703 ncRNA 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3245 chr7 135561676 135561876 + -1.03347 NA intron (NM_001316678, intron 1 of 19) B3|SINE|B2 -4386 NR_035488 100316818 NR_035488 ENSMUSG00000088141 Mir1962 mir-1962|mmu-mir-1962 microRNA 1962 ncRNA 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-990 chr13 81312107 81312307 + -1.03347 NA intron (NM_054053, intron 83 of 89) intron (NM_054053, intron 83 of 89) 320937 NM_054053 110789 Mm.288694 NM_054053 ENSMUSG00000069170 Adgrv1 Frings|Gpr98|Mass1|Mgr1|VLGR1 adhesion G protein-coupled receptor V1 protein-coding 0.015000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2616 chr4 78235423 78235623 + -1.03347 NA Intergenic Intergenic -23781 NR_160919 19266 Mm.184021 NM_011211 ENSMUSG00000028399 Ptprd 1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta protein tyrosine phosphatase, receptor type, D protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2141 chr2 138406139 138406339 + -1.03347 NA Intergenic Intergenic 127746 NM_145534 228662 Mm.153405 NM_145534 ENSMUSG00000062098 Btbd3 mKIAA0952 BTB (POZ) domain containing 3 protein-coding 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1317 chr15 51762011 51762211 + -1.03347 NA Intergenic UCON22|Unknown|Unknown 103350 NM_080635 68135 Mm.289800 NM_080635 ENSMUSG00000022312 Eif3h 1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3 eukaryotic translation initiation factor 3, subunit H protein-coding 0.010000 0.412935 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-25 chr1 123635876 123636076 + -1.03347 NA intron (NM_199021, intron 5 of 25) intron (NM_199021, intron 5 of 25) 409583 NM_199021 269109 Mm.417716 NM_199021 ENSMUSG00000036815 Dpp10 6430601K09Rik|DPP X|Dprp3 dipeptidylpeptidase 10 protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-355 chr10 18431251 18431451 + -1.03486 NA intron (NM_173390, intron 1 of 6) intron (NM_173390, intron 1 of 6) 23676 NM_173390 215819 Mm.297971 NM_173390 ENSMUSG00000039835 Nhsl1 5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357 NHS-like 1 protein-coding 0.005000 0.477612 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-202 chr15 44869907 44870107 + -1.03486 NA Intergenic Lx2B2|LINE|L1 -11387 NR_033609 239410 Mm.352401 NR_033609 ENSMUSG00000060530 A930017M01Rik Gm305 Smg-5 homolog, nonsense mediated mRNA decay factor pseudogene pseudo 0.005000 0.457711 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-281 chr18 59274552 59274752 + -1.03486 NA intron (NM_001081328, intron 2 of 2) intron (NM_001081328, intron 2 of 2) 99312 NM_001081328 78923 Mm.84007 NM_001081328 ENSMUSG00000058152 Chsy3 4833446K15Rik|AI662215 chondroitin sulfate synthase 3 protein-coding 0.005000 0.328358 54(ATTTGAATGAGTTTGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2817 chr5 81815525 81815725 + -1.03486 NA intron (NM_001359830, intron 25 of 25) intron (NM_001359830, intron 25 of 25) 309088 NR_138557 67327 Mm.87058 NR_138557 1700031L13Rik - RIKEN cDNA 1700031L13 gene ncRNA 0.000000 0.363184 -62(TTTTACAAGACCATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2931 chr6 17612721 17612921 + -1.03499 NA Intergenic Intergenic -24189 NM_007604 12343 Mm.392504 NM_007604 ENSMUSG00000015733 Capza2 1110053K06Rik|AW208808|Cappa2 capping protein (actin filament) muscle Z-line, alpha 2 protein-coding 0.015000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2104 chr2 119172912 119173112 + -1.03499 NA TTS (NM_177157) TTS (NM_177157) -1497 NM_001039223 623781 Mm.389344 NM_001039223 ENSMUSG00000055926 Gm14137 - predicted gene 14137 protein-coding 0.015000 0.572139 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-147 chr13 83502964 83503164 + -1.03499 NA promoter-TSS (NM_001347571) promoter-TSS (NM_001347571) -970 NM_001347564 17260 Mm.24001 NM_025282 ENSMUSG00000005583 Mef2c 5430401D19Rik|9930028G15Rik|AV011172|Mef2 myocyte enhancer factor 2C protein-coding 0.000000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-461 chr6 17612717 17612917 + -1.03499 NA Intergenic Intergenic -24193 NM_007604 12343 Mm.392504 NM_007604 ENSMUSG00000015733 Capza2 1110053K06Rik|AW208808|Cappa2 capping protein (actin filament) muscle Z-line, alpha 2 protein-coding 0.015000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2936 chr6 21206838 21207038 + -1.03499 NA Intergenic Intergenic -8408 NM_019697 16508 Mm.425316 NM_019697 ENSMUSG00000060882 Kcnd2 AI839615|AW555701|Kv4.2|R75121 potassium voltage-gated channel, Shal-related family, member 2 protein-coding 0.000000 0.328358 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-42 chr10 14212398 14212598 + -1.03499 NA Intergenic Intergenic 246119 NM_010437 15273 Mm.42157 NM_010437 ENSMUSG00000015501 Hivep2 Gm20114|MIBP-1|MIBP1|Schnurri-2|Shn-2 human immunodeficiency virus type I enhancer binding protein 2 protein-coding 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-422 chr10 55859975 55860175 + -1.03499 NA Intergenic Intergenic -246842 NM_001163833 73390 Mm.181475 NM_133751 ENSMUSG00000047669 Msl3l2 1700060H10Rik MSL3 like 2 protein-coding 0.005000 0.333333 14(CTAAGCATGACTAAAA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-306 chr2 15258310 15258510 + -1.03499 NA Intergenic Intergenic 203090 NM_029466 75869 Mm.174068 NM_029466 ENSMUSG00000017418 Arl5b 4930587A11Rik|AW146430|Arl8 ADP-ribosylation factor-like 5B protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-321 chr1 194576799 194576999 + -1.03520 NA Intergenic Lx|LINE|L1 -42930 NM_008882 18845 Mm.2251 NM_008882 ENSMUSG00000026640 Plxna2 2810428A13Rik|AA589422|AW457381|OCT|PlexA2|Plxn2|mKIAA0463 plexin A2 protein-coding 0.015000 0.363184 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-300 chr2 6998983 6999183 + -1.03520 NA intron (NM_001110231, intron 3 of 15) intron (NM_001110231, intron 3 of 15) -70361 NR_027890 68144 Mm.483289 NM_026575 5031426D15Rik - RIKEN cDNA 5031426D15 gene ncRNA 0.000000 0.407960 22(CTGTGGTCATGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1934 chr2 6998903 6999103 + -1.03520 NA intron (NM_001110231, intron 3 of 15) intron (NM_001110231, intron 3 of 15) -70281 NR_027890 68144 Mm.483289 NM_026575 5031426D15Rik - RIKEN cDNA 5031426D15 gene ncRNA 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1590 chr17 30223726 30223926 + -1.03649 NA intron (NM_172618, intron 10 of 11) ORR1C2|LTR|ERVL-MaLR 172354 NR_030688 623169 Mm.440508 NR_030688 Gm6402 EG623169 ribosomal protein S17 pseudogene pseudo 0.015000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-653 chr11 69242063 69242263 + -1.03649 NA Intergenic ORR1A4|LTR|ERVL-MaLR -5141 NM_008192 14919 Mm.291816 NM_008192 ENSMUSG00000020890 Gucy2e GC-E|GC1|ROS-GC1 guanylate cyclase 2e protein-coding 0.005000 0.477612 66(ATATAAAAGATAAATC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2298 chr3 65768181 65768381 + -1.03649 NA intron (NM_001166659, intron 6 of 12) intron (NM_001166659, intron 6 of 12) 102053 NM_001037923 624866 Mm.296317 NM_001037923 ENSMUSG00000074579 Lekr1 EG546798|EG624866|Gm6534 leucine, glutamate and lysine rich 1 protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-609 chr11 44975401 44975601 + -1.03649 NA intron (NM_001362579, intron 12 of 16) intron (NM_001362579, intron 12 of 16) 141427 NR_045100 100504255 Mm.123608 NR_045100 ENSMUSG00000084773 Gm12159 - predicted gene 12159 ncRNA 0.010000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-86 chr1 55747739 55747939 + -1.03649 NA intron (NM_001114663, intron 5 of 5) intron (NM_001114663, intron 5 of 5) -183402 NR_045837 329159 Mm.98697 NR_045837 ENSMUSG00000099950 9130227L01Rik - RIKEN cDNA 9130227L01 gene ncRNA 0.000000 0.427861 9(CATTAATTTTGCATA,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-434 chr5 59922084 59922284 + -1.03649 NA Intergenic Lx|LINE|L1 63818 NR_040683 71057 Mm.50817 NR_040682 ENSMUSG00000106013 4933402J10Rik - RIKEN cDNA 4933402J10 gene ncRNA 0.015000 0.412935 62(ATATCAAAGAAAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1046 chr13 115950119 115950319 + -1.03649 NA Intergenic RMER1C|Other|Other 359469 NM_021459 16392 Mm.42242 NM_021459 ENSMUSG00000042258 Isl1 - ISL1 transcription factor, LIM/homeodomain protein-coding 0.035000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-251 chr17 30223725 30223925 + -1.03649 NA intron (NM_172618, intron 10 of 11) ORR1C2|LTR|ERVL-MaLR 172355 NR_030688 623169 Mm.440508 NR_030688 Gm6402 EG623169 ribosomal protein S17 pseudogene pseudo 0.020000 0.457711 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-199 chr15 36491864 36492064 + -1.03649 NA intron (NM_001358006, intron 2 of 4) intron (NM_001358006, intron 2 of 4) 4770 NM_001358006 68839 Mm.396537 NM_175134 ENSMUSG00000048307 Ankrd46 1110054N06Rik|AI314978|AI987733 ankyrin repeat domain 46 protein-coding 0.020000 0.383085 -90(ATTTTGTCATTCACAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1751 chr18 47027983 47028183 + -1.03651 NA intron (NM_178377, intron 5 of 6) intron (NM_178377, intron 5 of 6) 69207 NM_178377 69456 Mm.210734 NM_178377 ENSMUSG00000042705 Commd10 2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre COMM domain containing 10 protein-coding 0.010000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1459 chr16 43221572 43221772 + -1.03797 NA intron (NM_001285805, intron 2 of 10) intron (NM_001285805, intron 2 of 10) -25612 NM_181058 56490 Mm.136238 NM_019778 ENSMUSG00000022708 Zbtb20 1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288 zinc finger and BTB domain containing 20 protein-coding 0.005000 0.338308 13(ATATGAATAAGAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-654 chr11 69242223 69242423 + -1.03797 NA Intergenic L1M5|LINE|L1 -5301 NM_008192 14919 Mm.291816 NM_008192 ENSMUSG00000020890 Gucy2e GC-E|GC1|ROS-GC1 guanylate cyclase 2e protein-coding 0.000000 0.398010 -94(ATATAAAAGATAAATC,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-392 chr4 11759906 11760106 + -1.03797 NA intron (NM_019753, intron 1 of 17) intron (NM_019753, intron 1 of 17) 1849 NM_019753 12557 Mm.33402 NM_019753 ENSMUSG00000028217 Cdh17 HPT-1|HPT-1/LI cadherin 17 protein-coding 0.005000 0.427861 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-144 chr13 63878978 63879178 + -1.03811 NA intron (NM_001013608, intron 17 of 18) intron (NM_001013608, intron 17 of 18) 63838 NM_023507 76251 Mm.186610 NM_023507 ENSMUSG00000021470 Ercc6l2 0610007P08Rik|1700019D06Rik|9330134C04Rik|Rad26l|Sr278 excision repair cross-complementing rodent repair deficiency, complementation group 6 like 2 protein-coding 0.000000 0.283582 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-665 chr11 81841160 81841360 + -1.03942 NA intron (NM_001034013, intron 1 of 9) MIRb|SINE|MIR -19417 NR_038010 71388 Mm.158687 NR_038010 ENSMUSG00000020703 5530401A14Rik - RIKEN cDNA 5530401A14 gene ncRNA 0.005000 0.407960 -4(CCTTGGTTCTGTAAAT,+,0.00),60(TTTTTTTCATTCATAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2153 chr2 143635103 143635303 + -1.03942 NA intron (NM_008792, intron 2 of 11) intron (NM_008792, intron 2 of 11) -87366 NR_040354 378776 Mm.381216 NR_040354 ENSMUSG00000086171 Pcsk2os1 C630020P19Rik proprotein convertase subtilisin/kexin type 2, opposite strand 1 ncRNA 0.010000 0.452736 84(ATCTACATAAATAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-229 chr1 132317341 132317541 + -1.03942 NA intron (NM_001195025, intron 1 of 7) intron (NM_001195025, intron 1 of 7) 1316 NM_001195025 74137 Mm.100666 NM_028778 ENSMUSG00000009772 Nuak2 1200013B22Rik|Omphk2|Snark|mKIAA0537 NUAK family, SNF1-like kinase, 2 protein-coding 0.000000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3673 chrX 9653185 9653385 + -1.04086 NA TTS (NM_025975) TTS (NM_025975) 9698 NM_025975 67117 Mm.29150 NM_025975 ENSMUSG00000031176 Dynlt3 2310075M16Rik|AU042796|Tcte1l dynein light chain Tctex-type 3 protein-coding 0.000000 0.383085 0(ATATGTATGACAATGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3477 chr9 6677764 6677964 + -1.04086 NA Intergenic Intergenic -411317 NM_027942 71829 Mm.141452 NM_027942 ENSMUSG00000047619 Ddi1 1700011N24Rik DNA-damage inducible 1 protein-coding 0.000000 0.383085 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-240 chr16 85423085 85423285 + -1.04227 NA Intergenic Intergenic 127188 NM_144853 224405 Mm.213203 NM_144853 ENSMUSG00000041134 Cyyr1 - cysteine and tyrosine-rich protein 1 protein-coding 0.000000 0.383085 -47(TAATTCCCATGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-364 chr10 24165202 24165402 + -1.04227 NA intron (NM_001358563, intron 2 of 9) intron (NM_001358563, intron 2 of 9) 15985 NM_016797 53331 Mm.248042 NM_016797 ENSMUSG00000019998 Stx7 AI315064|AI317144|AW107239|Syn7 syntaxin 7 protein-coding 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3444 chr8 113254095 113254295 + -1.04227 NA Intergenic Intergenic 186933 NR_033584 791378 Mm.350576 NR_033584 ENSMUSG00000110541 Gm10280 - predicted gene 10280 ncRNA 0.020000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-541 chr8 113254127 113254327 + -1.04227 NA Intergenic Intergenic 186965 NR_033584 791378 Mm.350576 NR_033584 ENSMUSG00000110541 Gm10280 - predicted gene 10280 ncRNA 0.020000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1877 chr19 33148503 33148703 + -1.04365 NA intron (NR_160911, intron 6 of 6) intron (NR_160911, intron 6 of 6) -8509 NR_039552 100628575 NR_039552 ENSMUSG00000106278 Mir3970 mmu-mir-3970|mu-mir-3970 microRNA 3970 ncRNA 0.010000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-571 chr9 112071377 112071577 + -1.04365 NA intron (NM_001362029, intron 18 of 19) intron (NM_001362029, intron 18 of 19) 47234 NR_029823 723815 NR_029823 ENSMUSG00000065441 Mir128-2 Mirn128-2|Mirn128b|mir-128-2|mir-128b microRNA 128-2 ncRNA 0.005000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-557 chr9 46978867 46979067 + -1.04418 NA Intergenic Intergenic -19774 NM_001243258 215467 Mm.246572 NM_001243258 ENSMUSG00000094893 Gm4791 D930036J05 predicted gene 4791 protein-coding 0.025000 0.407960 -31(CTTTCAAAAAGAAAGA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-137 chr13 34087615 34087815 + -1.04418 NA intron (NR_046184, intron 4 of 4) intron (NR_046184, intron 4 of 4) -9707 NM_009450 22151 Mm.422827 NM_009450 ENSMUSG00000058672 Tubb2a M(beta)2|Tubb2 tubulin, beta 2A class IIA protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-391 chr10 34904745 34904945 + -1.04502 NA Intergenic Intergenic 421445 NM_010237 14302 Mm.332432 NM_010237 ENSMUSG00000019779 Frk BSK|BSK/IYK|C85044|GTK|RAK fyn-related kinase protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1101 chr14 34720455 34720655 + -1.04502 NA intron (NM_001004436, intron 4 of 18) intron (NM_001004436, intron 4 of 18) 46627 NM_001301330 218914 Mm.27957 NM_001004436 ENSMUSG00000041408 Wapl A530089A20Rik|BC037674|DIF-2|FOE|Wapal WAPL cohesin release factor protein-coding 0.000000 0.323383 -99(ATTACCATCATAAACA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-53 chr10 36898828 36899028 + -1.04561 NA Intergenic L2b|LINE|L2 -75616 NM_008229 15182 Mm.19806 NM_008229 ENSMUSG00000019777 Hdac2 D10Wsu179e|YAF1|Yy1bp|mRPD3 histone deacetylase 2 protein-coding 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1778 chr18 59261529 59261729 + -1.04768 NA intron (NM_001081328, intron 2 of 2) intron (NM_001081328, intron 2 of 2) 86289 NM_001081328 78923 Mm.84007 NM_001081328 ENSMUSG00000058152 Chsy3 4833446K15Rik|AI662215 chondroitin sulfate synthase 3 protein-coding 0.000000 0.388060 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-307 chr2 19571385 19571585 + -1.04768 NA Intergenic L1MA4|LINE|L1 -17575 NM_027600 70909 Mm.158488 NM_027600 ENSMUSG00000026734 4921504E06Rik 4921522E24Rik RIKEN cDNA 4921504E06 gene protein-coding 0.000000 0.393035 18(ATTTGCAGCACAATCA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3246 chr7 136150236 136150436 + -1.04768 NA Intergenic Intergenic -117988 NR_102277 77383 Mm.227745 NR_102277 ENSMUSG00000110027 C030029H02Rik - RIKEN cDNA C030029H02 gene ncRNA 0.015000 0.547264 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-280 chr18 59261564 59261764 + -1.04768 NA intron (NM_001081328, intron 2 of 2) intron (NM_001081328, intron 2 of 2) 86324 NM_001081328 78923 Mm.84007 NM_001081328 ENSMUSG00000058152 Chsy3 4833446K15Rik|AI662215 chondroitin sulfate synthase 3 protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-698 chr11 105507950 105508150 + -1.04899 NA Intergenic Intergenic -51315 NM_172568 632687 Mm.121570 NM_172568 ENSMUSG00000078627 March10 4933417C16Rik|AV039223|Rnf190 membrane-associated ring finger (C3HC4) 10 protein-coding 0.000000 0.462687 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-293 chr19 32304299 32304499 + -1.05010 NA intron (NM_001362423, intron 2 of 9) intron (NM_001362423, intron 2 of 9) 44917 NM_001168525 208449 Mm.329810 NM_144792 ENSMUSG00000040451 Sgms1 9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23 sphingomyelin synthase 1 protein-coding 0.005000 0.343284 50(CTTAGCATGACAAGTT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1627 chr17 66716475 66716675 + -1.05010 NA intron (NR_151453, intron 1 of 1) intron (NR_151453, intron 1 of 1) 2119 NR_151453 102639882 Mm.443262 NR_151453 1700016K05Rik - RIKEN cDNA 1700016K05 gene ncRNA 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3162 chr7 84022643 84022843 + -1.05027 NA intron (NM_030728, intron 1 of 28) intron (NM_030728, intron 1 of 28) 63762 NM_030728 80982 Mm.160389 NM_030728 ENSMUSG00000052353 Cemip 12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199 cell migration inducing protein, hyaluronan binding protein-coding 0.010000 0.497512 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-495 chr7 64100641 64100841 + -1.05027 NA Intergenic Intergenic -53094 NM_001039104 17364 Mm.38875 NM_018752 ENSMUSG00000030523 Trpm1 4732499L03Rik|AI606771|Ltrpc1|Mlsn1 transient receptor potential cation channel, subfamily M, member 1 protein-coding 0.015000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-501 chr7 84582877 84583077 + -1.05613 NA Intergenic L1MA6|LINE|L1 22965 NM_010176 14085 Mm.3798 NM_010176 ENSMUSG00000030630 Fah swst fumarylacetoacetate hydrolase protein-coding 0.000000 0.378109 52(TATAAATATTCATT,+,0.00),52(TATAAATATTCATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1141 chr14 67997366 67997566 + -1.05637 NA Intergenic Lx|LINE|L1 -63894 NM_177780 68813 Mm.258155 NM_177780 ENSMUSG00000044447 Dock5 1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc dedicator of cytokinesis 5 protein-coding 0.015000 0.417910 -2(TCTTTTTCTTTTTTAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2497 chr3 154139398 154139598 + -1.05793 NA intron (NM_001081263, intron 1 of 21) intron (NM_001081263, intron 1 of 21) 166062 NM_001081263 242259 Mm.239962 NM_001081263 ENSMUSG00000028360 Slc44a5 AA117069|Gm422 solute carrier family 44, member 5 protein-coding 0.015000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2053 chr2 92067034 92067234 + -1.05793 NA Intergenic ORSL-2b|DNA|hAT-Tip100 -42964 NM_011957 26427 Mm.10353 NM_011957 ENSMUSG00000027230 Creb3l1 Oasis cAMP responsive element binding protein 3-like 1 protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2172 chr2 151595055 151595255 + -1.05793 NA intron (NM_198214, intron 5 of 5) intron (NM_198214, intron 5 of 5) 22532 NM_145535 228765 Mm.32068 NM_145535 ENSMUSG00000027456 Sdcbp2 - syndecan binding protein (syntenin) 2 protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2888 chr5 127336297 127336497 + -1.05793 NA intron (NM_175432, intron 1 of 8) intron (NM_175432, intron 1 of 8) -54774 NR_038128 67351 Mm.320172 NR_038127 ENSMUSG00000087104 Tmem132cos 1700085B03Rik transmembrane protein 132C, opposite strand ncRNA 0.015000 0.497512 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-141 chr13 47719187 47719387 + -1.05793 NA Intergenic Intergenic 51737 NR_153835 74939 Mm.342710 NR_153835 ENSMUSG00000114509 4930471G24Rik - RIKEN cDNA 4930471G24 gene ncRNA 0.015000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1430 chr16 24093184 24093384 + -1.05795 NA Intergenic Intergenic -10594 NR_155457 108168278 Mm.417246 NR_155457 Gm46545 - predicted gene, 46545 ncRNA 0.005000 0.402985 -10(CTTAACATCAGAAAAC,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-156 chr13 112743325 112743525 + -1.05795 NA Intergenic Intergenic -57352 NM_008247 19012 Mm.291029 NM_008247 ENSMUSG00000021759 Plpp1 Hic53|Hpic53|LPP-1|LPP1|PAP-2a|PAP2-alpha|PAP2a|Ppap2a|mPAP phospholipid phosphatase 1 protein-coding 0.010000 0.378109 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-433 chr5 57919092 57919292 + -1.05795 NA intron (NM_001122758, intron 2 of 2) intron (NM_001122758, intron 2 of 2) 201111 NM_018764 54216 Mm.332387 NM_018764 ENSMUSG00000029108 Pcdh7 - protocadherin 7 protein-coding 0.005000 0.373134 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-338 chr2 143991094 143991294 + -1.05795 NA intron (NM_024281, intron 1 of 23) intron (NM_024281, intron 1 of 23) 20069 NM_024281 81910 Mm.13705 NM_024281 ENSMUSG00000027422 Rrbp1 1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180 ribosome binding protein 1 protein-coding 0.005000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1691 chr18 16455428 16455628 + -1.05795 NA Intergenic MTEa|LTR|ERVL-MaLR 353718 NM_007664 12558 Mm.257437 NM_007664 ENSMUSG00000024304 Cdh2 CDHN|N-CAD|Ncad cadherin 2 protein-coding 0.005000 0.447761 -100(ATTTCCAGGACAATTA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2788 chr5 57919117 57919317 + -1.05795 NA intron (NM_001122758, intron 2 of 2) intron (NM_001122758, intron 2 of 2) 201136 NM_018764 54216 Mm.332387 NM_018764 ENSMUSG00000029108 Pcdh7 - protocadherin 7 protein-coding 0.005000 0.368159 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-116 chr12 41760583 41760783 + -1.05795 NA intron (NM_053122, intron 6 of 6) intron (NM_053122, intron 6 of 6) -274626 NM_010733 16981 Mm.404786 NM_010733 ENSMUSG00000036295 Lrrn3 NLRR-3 leucine rich repeat protein 3, neuronal protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-828 chr12 80374736 80374936 + -1.05795 NA intron (NM_001364324, intron 6 of 8) intron (NM_001364324, intron 6 of 8) 16841 NR_037207 100526530 NR_037207 ENSMUSG00000105972 Mir1843a Mir1843|mir-1843a|mmu-mir-1843|mmu-mir-1843a microRNA 1843a ncRNA 0.005000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3317 chr8 37498686 37498886 + -1.05795 NA Intergenic RLTR13G|LTR|ERVK -474548 NR_126063 414128 Mm.450976 NR_126063 ENSMUSG00000110242 G630064G18Rik - RIKEN cDNA G630064G18 gene ncRNA 0.010000 0.412935 4(ATTTGCATTATAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3067 chr6 122513297 122513497 + -1.05795 NA promoter-TSS (NM_001347434) promoter-TSS (NM_001347434) -187 NM_001347434 50530 Mm.41931 NM_015776 ENSMUSG00000030116 Mfap5 MAGP-2|MFAP-5 microfibrillar associated protein 5 protein-coding 0.015000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2170 chr2 151564995 151565195 + -1.05795 NA Intergenic Intergenic -7528 NM_145535 228765 Mm.32068 NM_145535 ENSMUSG00000027456 Sdcbp2 - syndecan binding protein (syntenin) 2 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-569 chr11 20244498 20244698 + -1.05795 NA intron (NM_172260, intron 1 of 6) MLTR18C_MM|LTR|ERVK 4826 NM_172260 216543 Mm.260314 NM_172260 ENSMUSG00000044066 Cep68 6030463E10Rik|AI481761|BC027174|Kiaa0582 centrosomal protein 68 protein-coding 0.015000 0.507463 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-18 chr1 80303083 80303283 + -1.05795 NA intron (NM_016716, intron 3 of 15) intron (NM_016716, intron 3 of 15) 37507 NM_016716 26554 Mm.12665 NM_016716 ENSMUSG00000004364 Cul3 KIAA0617 cullin 3 protein-coding 0.020000 0.358209 -82(CCATTGTATTGTAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1667 chr17 91119031 91119231 + -1.05795 NA Intergenic Lx2A1|LINE|L1 -26329 NM_020252 18189 Mm.478418 NM_020252 ENSMUSG00000024109 Nrxn1 1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578 neurexin I protein-coding 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2154 chr2 143991053 143991253 + -1.05795 NA intron (NM_024281, intron 1 of 23) intron (NM_024281, intron 1 of 23) 20110 NM_024281 81910 Mm.13705 NM_024281 ENSMUSG00000027422 Rrbp1 1700087N07Rik|5730465C04Rik|ES/130|mKIAA1398|mRRp0|mRRp1.8|mRRp10|mRRp15a|mRRp15b|mRRp16.8|mRRp2|mRRp41|mRRp47|mRRp5.4|p180 ribosome binding protein 1 protein-coding 0.000000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2858 chr5 101901247 101901447 + -1.05795 NA intron (NM_172882, intron 32 of 66) intron (NM_172882, intron 32 of 66) 136217 NM_173370 74596 Mm.46764 NM_173370 ENSMUSG00000029330 Cds1 4833409J18Rik|AI314024|AW125888 CDP-diacylglycerol synthase 1 protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3452 chr8 119310290 119310490 + -1.05795 NA intron (NM_019707, intron 11 of 13) intron (NM_019707, intron 11 of 13) -34148 NM_024219 68196 Mm.358714 NM_024219 ENSMUSG00000031839 Hsbp1 0610007A03Rik|AA408769|Hsp25 heat shock factor binding protein 1 protein-coding 0.015000 0.492537 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-457 chr6 7092530 7092730 + -1.05795 NA Intergenic Intergenic 136612 NM_001077713 71238 Mm.389086 NM_001077713 ENSMUSG00000042505 Sdhaf3 0610005M07Rik|4933430A16Rik|Acn9 succinate dehydrogenase complex assembly factor 3 protein-coding 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1392 chr15 96006950 96007150 + -1.05795 NA Intergenic L1M3|LINE|L1 72503 NR_126492 402773 Mm.210567 NM_001033483 ENSMUSG00000078925 D030018L15Rik - nuclear receptor coactivator 2 pseudogene pseudo 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-227 chr1 131469493 131469693 + -1.05805 NA intron (NM_001081011, intron 2 of 22) intron (NM_001081011, intron 2 of 22) 57768 NM_001081011 14270 Mm.276259 NM_019520 ENSMUSG00000026425 Srgap2 9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3 SLIT-ROBO Rho GTPase activating protein 2 protein-coding 0.000000 0.378109 -44(CATTTTTTATGTAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1490 chr16 60661557 60661757 + -1.05805 NA Intergenic RMER30|DNA|hAT-Charlie -56126 NM_007938 13840 Mm.455790 NM_007938 ENSMUSG00000055540 Epha6 Ehk2|Hek12|m-ehk2 Eph receptor A6 protein-coding 0.005000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2016 chr2 57819914 57820114 + -1.05805 NA Intergenic Intergenic -178141 NM_172855 241391 Mm.484118 NM_172855 ENSMUSG00000026828 Galnt5 4832424J23 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 0.010000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2399 chr3 117411780 117411980 + -1.05805 NA Intergenic MLTR14|LTR|ERV1 -51004 NM_177664 229791 Mm.140138 NM_177664 ENSMUSG00000044667 Plppr4 A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455 phospholipid phosphatase related 4 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-548 chr11 7976098 7976298 + -1.05805 NA Intergenic L1ME3|LINE|L1 688337 NM_001083587 319939 Mm.337820 NM_001083587 ENSMUSG00000020422 Tns3 BC023928|F830010I22Rik|TEM6|Tens1 tensin 3 protein-coding 0.020000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1483 chr16 56853184 56853384 + -1.05805 NA intron (NM_019631, intron 1 of 5) intron (NM_019631, intron 1 of 5) 32879 NM_019631 56277 Mm.262328 NM_019631 ENSMUSG00000022754 Tmem45a C630002M10Rik|M32486|p19.5 transmembrane protein 45a protein-coding 0.010000 0.472637 42(CTCTGCATGAGAAGAA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-227 chr16 60661547 60661747 + -1.05805 NA Intergenic RMER30|DNA|hAT-Charlie -56116 NM_007938 13840 Mm.455790 NM_007938 ENSMUSG00000055540 Epha6 Ehk2|Hek12|m-ehk2 Eph receptor A6 protein-coding 0.005000 0.328358 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-87 chr11 3748255 3748455 + -1.05805 NA intron (NM_152818, intron 2 of 13) RMER4A|LTR|ERVK -26128 NM_001302631 74309 Mm.61022 NM_152818 ENSMUSG00000020435 Osbp2 1700095P05Rik|C630001G20Rik|Gm244|ORP-4|OSBPL1 oxysterol binding protein 2 protein-coding 0.010000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-534 chr8 96027517 96027717 + -1.05805 NA Intergenic L1MB3|LINE|L1 -139216 NM_010325 14719 Mm.230169 NM_010325 ENSMUSG00000031672 Got2 AL022787|FABP-pm|Got-2|Kyat4|mAspAT glutamatic-oxaloacetic transaminase 2, mitochondrial protein-coding 0.000000 0.333333 52(ATATAAATAACTAAGG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-299 chr2 6991079 6991279 + -1.05805 NA intron (NM_001110231, intron 3 of 15) intron (NM_001110231, intron 3 of 15) -62457 NR_027890 68144 Mm.483289 NM_026575 5031426D15Rik - RIKEN cDNA 5031426D15 gene ncRNA 0.010000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-341 chr10 10187758 10187958 + -1.05805 NA Intergenic Intergenic 284541 NM_001127353 215772 Mm.246573 NM_172547 ENSMUSG00000050994 Adgb 9130014G24Rik androglobin protein-coding 0.010000 0.353234 -44(GTTTACAAGACAATAT,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-89 chr11 7976127 7976327 + -1.05805 NA Intergenic L1ME3|LINE|L1 688308 NM_001083587 319939 Mm.337820 NM_001083587 ENSMUSG00000020422 Tns3 BC023928|F830010I22Rik|TEM6|Tens1 tensin 3 protein-coding 0.020000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2573 chr4 50322435 50322635 + -1.05815 NA Intergenic ORR1A3|LTR|ERVL-MaLR -476766 NM_001033351 242443 Mm.440095 NM_001033351 ENSMUSG00000039579 Grin3a 6430537F04|A830097C19Rik|NMDAR-L|NR3A|mKIAA1973 glutamate receptor ionotropic, NMDA3A protein-coding 0.000000 0.447761 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-212 chr15 62287355 62287555 + -1.05815 NA Intergenic Intergenic -68004 NR_003523 67552 Mm.484027 NM_026230 H2afy3 4933432H23Rik H2A histone family, member Y3 pseudo 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-481 chr10 92992030 92992230 + -1.05815 NA intron (NM_001347060, intron 26 of 67) L1MEj|LINE|L1 89492 NM_001347060 380654 Mm.34980 NM_001347060 ENSMUSG00000020014 Cfap54 4930485B16Rik|Gm872 cilia and flagella associated protein 54 protein-coding 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-842 chr12 92295833 92296033 + -1.05815 NA Intergenic Intergenic -446776 NM_011344 20338 Mm.250605 NM_011344 ENSMUSG00000020964 Sel1l AW493766|Sel1h|mKIAA4137 sel-1 suppressor of lin-12-like (C. elegans) protein-coding 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2206 chr3 4546089 4546289 + -1.05815 NA Intergenic Intergenic -252519 NR_045272 100503859 Mm.75172 NR_045272 ENSMUSG00000098659 1110015O18Rik - RIKEN cDNA 1110015O18 gene ncRNA 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-339 chr10 9865678 9865878 + -1.05815 NA intron (NM_001081344, intron 3 of 25) intron (NM_001081344, intron 3 of 25) 35262 NM_001081344 78808 Mm.331751 NM_030191 ENSMUSG00000019790 Stxbp5 0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006 syntaxin binding protein 5 (tomosyn) protein-coding 0.010000 0.442786 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-261 chr17 91118980 91119180 + -1.05815 NA Intergenic Intergenic -26278 NM_020252 18189 Mm.478418 NM_020252 ENSMUSG00000024109 Nrxn1 1700062G21Rik|9330127H16Rik|A230068P09Rik|mKIAA0578 neurexin I protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3521 chr9 35576548 35576748 + -1.05815 NA Intergenic Lx4A|LINE|L1 -6579 NM_029762 76832 Mm.482285 NM_029762 ENSMUSG00000050555 Hyls1 3010015K02Rik HYLS1, centriolar and ciliogenesis associated protein-coding 0.000000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3621 chr9 97727935 97728135 + -1.05815 NA intron (NM_022319, intron 2 of 17) intron (NM_022319, intron 2 of 17) -275385 NR_110443 66737 Mm.445908 NR_110443 ENSMUSG00000090255 4921534H16Rik - RIKEN cDNA 4921534H16 gene ncRNA 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1728 chr18 34297199 34297399 + -1.05815 NA intron (NM_001360980, intron 9 of 16) intron (NM_001360980, intron 9 of 16) -33846 NM_025527 66384 Mm.29452 NM_025527 ENSMUSG00000014504 Srp19 2310020D23Rik signal recognition particle 19 protein-coding 0.005000 0.432836 19(CCTGTGTAATGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1323 chr15 53598081 53598281 + -1.05815 NA intron (NM_177225, intron 4 of 4) intron (NM_177225, intron 4 of 4) 16098 NR_039538 100628567 NR_039538 ENSMUSG00000104794 Mir28c mmu-mir-28c microRNA 28c ncRNA 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1047 chr13 116404594 116404794 + -1.05815 NA Intergenic Intergenic -95006 NM_021459 16392 Mm.42242 NM_021459 ENSMUSG00000042258 Isl1 - ISL1 transcription factor, LIM/homeodomain protein-coding 0.000000 0.363184 -11(TGTTTATTATTCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-502 chr7 88307438 88307638 + -1.05815 NA intron (NM_009982, intron 5 of 6) intron (NM_009982, intron 5 of 6) 29453 NM_001311790 13032 Mm.89295 NM_009982 ENSMUSG00000030560 Ctsc AI047818|CatC|DPP1|DPPI cathepsin C protein-coding 0.000000 0.313433 -52(TATGCTTATTTATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-278 chr1 167678902 167679102 + -1.05815 NA Intergenic Lx|LINE|L1 -10556 NM_033652 110648 Mm.330081 NM_033652 ENSMUSG00000026686 Lmx1a Lmx1.1|dr|dreher|sst LIM homeobox transcription factor 1 alpha protein-coding 0.000000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1967 chr2 24987710 24987910 + -1.05815 NA intron (NM_146251, intron 8 of 34) intron (NM_146251, intron 8 of 34) 11777 NM_146251 241274 Mm.389243 NM_146251 ENSMUSG00000036833 Pnpla7 BC027342|E430013P11Rik|Nre patatin-like phospholipase domain containing 7 protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3146 chr7 75683626 75683826 + -1.05815 NA intron (NM_029332, intron 12 of 36) intron (NM_029332, intron 12 of 36) -164612 NM_182782 207952 Mm.206223 NM_029652 ENSMUSG00000055652 Klhl25 2810402K13Rik|BC027373|Enc-1 kelch-like 25 protein-coding 0.005000 0.447761 8(CCTTTGTCTTTCAAAG,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-41 chr10 9865698 9865898 + -1.05815 NA intron (NM_001081344, intron 3 of 25) intron (NM_001081344, intron 3 of 25) 35242 NM_001081344 78808 Mm.331751 NM_030191 ENSMUSG00000019790 Stxbp5 0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006 syntaxin binding protein 5 (tomosyn) protein-coding 0.015000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-741 chr12 16309999 16310199 + -1.05815 NA Intergenic Intergenic 279671 NM_172950 14245 Mm.153625 NM_015763 ENSMUSG00000020593 Lpin1 Lipin1|fld lipin 1 protein-coding 0.010000 0.402985 -41(TATGCATATTTAAG,-,0.00) -48(CATTTGTTATGCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3277 chr8 11848638 11848838 + -1.05815 NA intron (NM_029326, intron 3 of 6) intron (NM_029326, intron 3 of 6) 8217 NM_029326 75528 Mm.440342 NM_029326 ENSMUSG00000031512 Tex29 1700018L24Rik testis expressed 29 protein-coding 0.010000 0.378109 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-289 chr19 18949153 18949353 + -1.05815 NA intron (NM_001043354, intron 9 of 9) intron (NM_001043354, intron 9 of 9) 51864 NM_001289921 225998 Mm.234641 NM_146095 ENSMUSG00000036192 Rorb Nr1f2|RZR-beta|RZRB|Rorbeta|hstp RAR-related orphan receptor beta protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1201 chr14 108624611 108624811 + -1.05815 NA Intergenic Intergenic 289528 NM_199065 76965 Mm.257268 NM_199065 ENSMUSG00000075478 Slitrk1 3200001I04Rik SLIT and NTRK-like family, member 1 protein-coding 0.005000 0.343284 -54(ATTTTCACAACAAAAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-140 chr1 80447721 80447921 + -1.05815 NA intron (NR_040460, intron 1 of 2) intron (NR_040460, intron 1 of 2) 1889 NR_040460 72208 Mm.396181 NR_040460 ENSMUSG00000101483 1700016L21Rik CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan RIKEN cDNA 1700016L21 gene ncRNA 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3569 chr9 76096078 76096278 + -1.05815 NA intron (NM_173731, intron 7 of 8) L1M5|LINE|L1 81201 NM_173731 208982 Mm.82306 NM_173731 ENSMUSG00000007908 Hmgcll1 BC037381 3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1 protein-coding 0.000000 0.273632 -57(ATACTATCATGAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1850 chr19 18949074 18949274 + -1.05815 NA intron (NM_001043354, intron 9 of 9) intron (NM_001043354, intron 9 of 9) 51943 NM_001289921 225998 Mm.234641 NM_146095 ENSMUSG00000036192 Rorb Nr1f2|RZR-beta|RZRB|Rorbeta|hstp RAR-related orphan receptor beta protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2719 chr5 9029902 9030102 + -1.05829 NA Intergenic Intergenic -32856 NM_023733 74114 Mm.28197 NM_023733 ENSMUSG00000003623 Crot 1200003H03Rik carnitine O-octanoyltransferase protein-coding 0.000000 0.368159 28(ACTGCATAATTTATA,+,0.00),28(ACTGCATAATTTATA,-,0.00) 52(GCATGATCATGCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-421 chr5 9029928 9030128 + -1.05829 NA Intergenic Intergenic -32882 NM_023733 74114 Mm.28197 NM_023733 ENSMUSG00000003623 Crot 1200003H03Rik carnitine O-octanoyltransferase protein-coding 0.000000 0.348259 2(ACTGCATAATTTATA,+,0.00),2(ACTGCATAATTTATA,-,0.00) 26(GCATGATCATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2736 chr5 18311157 18311357 + -1.05829 NA intron (NM_010305, intron 1 of 7) intron (NM_010305, intron 1 of 7) 49156 NM_010305 14677 Mm.254629 NM_010305 ENSMUSG00000057614 Gnai1 AU046200|Gialpha1|Gnai-1 guanine nucleotide binding protein (G protein), alpha inhibiting 1 protein-coding 0.010000 0.402985 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-270 chr18 35640210 35640410 + -1.05829 NA Intergenic RLTR13G|LTR|ERVK 9057 NM_027222 69816 Mm.27252 NM_027222 ENSMUSG00000024353 Mzb1 2010001M09Rik|AV064572|PACAP|pERp1 marginal zone B and B1 cell-specific protein 1 protein-coding 0.000000 0.388060 51(ATTAGCATTATAAAGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1960 chr2 20483192 20483392 + -1.05829 NA intron (NM_001081006, intron 2 of 21) intron (NM_001081006, intron 2 of 21) -26755 NM_029895 208618 Mm.237935 NM_029895 ENSMUSG00000036617 Etl4 6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt enhancer trap locus 4 protein-coding 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1731 chr18 35640205 35640405 + -1.05829 NA Intergenic RLTR13G|LTR|ERVK 9062 NM_027222 69816 Mm.27252 NM_027222 ENSMUSG00000024353 Mzb1 2010001M09Rik|AV064572|PACAP|pERp1 marginal zone B and B1 cell-specific protein 1 protein-coding 0.000000 0.378109 56(ATTAGCATTATAAAGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2278 chr3 59542727 59542927 + -1.05829 NA Intergenic L1_Mur3|LINE|L1 -186959 NM_001101531 433597 Mm.297801 NM_001101531 ENSMUSG00000090527 Gm5538 - predicted gene 5538 protein-coding 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3003 chr6 77767813 77768013 + -1.05829 NA intron (NM_145732, intron 3 of 18) intron (NM_145732, intron 3 of 18) 211754 NM_001355193 12386 Mm.34637 NM_009819 ENSMUSG00000063063 Ctnna2 AI481747|Catna|Catna2|cdf|chp catenin (cadherin associated protein), alpha 2 protein-coding 0.005000 0.417910 4(AAATGAATGACAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3635 chr9 103061780 103061980 + -1.05856 NA intron (NM_033314, intron 3 of 13) intron (NM_033314, intron 3 of 13) -50194 NM_173781 270192 Mm.490252 NM_173781 ENSMUSG00000032549 Rab6b 9630015C03|AI844641|C330006L04Rik|D9Bwg0185e RAB6B, member RAS oncogene family protein-coding 0.015000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-42 chr1 32184829 32185029 + -1.05856 NA intron (NM_133235, intron 1 of 8) intron (NM_133235, intron 1 of 8) 12207 NM_133235 170771 Mm.336594 NM_133235 ENSMUSG00000026058 Khdrbs2 6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1 KH domain containing, RNA binding, signal transduction associated 2 protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3071 chr6 127223644 127223844 + -1.05856 NA Intergenic Lx8|LINE|L1 -72696 NM_009829 12444 Mm.333406 NM_009829 ENSMUSG00000000184 Ccnd2 2600016F06Rik|AI256817|BF642806|C86853|Vin-1|Vin1|cD2 cyclin D2 protein-coding 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2384 chr3 110755788 110755988 + -1.05856 NA Intergenic Intergenic -504889 NM_178891 99890 Mm.36115 NM_178891 ENSMUSG00000049300 Prmt6 AW124876|BB233495|Hrmt1l6 protein arginine N-methyltransferase 6 protein-coding 0.005000 0.353234 49(CATGCATATGCATA,+,0.00),49(CATGCATATGCATA,-,0.00) 54(ATATGCATAACAGACC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2875 chr5 118066975 118067175 + -1.05856 NA 3' UTR (NM_172721, exon 11 of 11) 3' UTR (NM_172721, exon 11 of 11) 39332 NR_151582 57816 Mm.273285 NM_021344 ENSMUSG00000029359 Tesc 1010001A17Rik|2410011K10Rik|TE-1 tescalcin protein-coding 0.015000 0.626866 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2820 chr5 82115810 82116010 + -1.05856 NA Intergenic Lx10|LINE|L1 8803 NR_138557 67327 Mm.87058 NR_138557 1700031L13Rik - RIKEN cDNA 1700031L13 gene ncRNA 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-27 chr1 22979492 22979692 + -1.05856 NA Intergenic Intergenic 81205 NR_151543 665725 Mm.416993 NR_151543 Gm7759 EG665725 predicted gene 7759 ncRNA 0.000000 0.358209 -59(AATGAATCTGCATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1840 chr19 14240780 14240980 + -1.05856 NA Intergenic Intergenic 195070 NR_152176 667433 Mm.128913 NR_152176 Gm8630 EG667433 predicted gene 8630 ncRNA 0.010000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3008 chr6 80144859 80145059 + -1.05856 NA intron (NM_001134743, intron 2 of 2) ERVB3_1-LTR_MM|LTR|ERVK 125316 NM_001347261 243499 Mm.483425 NM_178731 ENSMUSG00000052581 Lrrtm4 7530419J18Rik|A230052N11 leucine rich repeat transmembrane neuronal 4 protein-coding 0.005000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-542 chr11 4308677 4308877 + -1.05856 NA Intergenic Intergenic 41981 NM_001039537 16878 Mm.4964 NM_008501 ENSMUSG00000034394 Lif - leukemia inhibitory factor protein-coding 0.040000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-158 chr1 90276121 90276321 + -1.05856 NA Intergenic Intergenic 72241 NM_007722 12778 Mm.6522 NM_007722 ENSMUSG00000044337 Ackr3 AW541270|CXC-R7|CXCR-7|Cmkor1|Cxcr7|RDC-1|Rdc1 atypical chemokine receptor 3 protein-coding 0.020000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1873 chr19 32181982 32182182 + -1.05856 NA intron (NM_001362423, intron 5 of 9) intron (NM_001362423, intron 5 of 9) 28931 NM_001168526 208449 Mm.329810 NM_144792 ENSMUSG00000040451 Sgms1 9530058O11Rik|AI841905|C80702|Mob|Sms1|Sor1|Tmem23 sphingomyelin synthase 1 protein-coding 0.015000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3081 chr6 137170306 137170506 + -1.05856 NA promoter-TSS (NM_001164214) promoter-TSS (NM_001164214) 90 NM_181988 232441 Mm.46233 NM_181988 ENSMUSG00000030222 Rerg - RAS-like, estrogen-regulated, growth-inhibitor protein-coding 0.020000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3237 chr7 131898222 131898422 + -1.05856 NA Intergenic Intergenic -68138 NM_173410 233919 Mm.208740 NM_173410 ENSMUSG00000040125 Gpr26 9630036A11Rik|A730021D22 G protein-coupled receptor 26 protein-coding 0.000000 0.412935 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-317 chr2 63702507 63702707 + -1.05856 NA Intergenic Intergenic -127319 NR_152174 667257 Mm.417007 NR_152174 Gm8541 EG667257 predicted gene 8541 ncRNA 0.040000 0.661692 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-462 chr10 83042905 83043105 + -1.05856 NA intron (NM_021439, intron 1 of 2) intron (NM_021439, intron 1 of 2) 57508 NM_021439 58250 Mm.360747 NM_021439 ENSMUSG00000034612 Chst11 1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s carbohydrate sulfotransferase 11 protein-coding 0.015000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2739 chr5 19104950 19105150 + -1.05862 NA Intergenic Lx7|LINE|L1 121505 NR_102341 70832 Mm.398993 NR_102341 ENSMUSG00000097626 4921504A21Rik - RIKEN cDNA 4921504A21 gene ncRNA 0.010000 0.398010 48(AATACATATGCAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1391 chr15 94704420 94704620 + -1.05862 NA intron (NM_178789, intron 2 of 7) intron (NM_178789, intron 2 of 7) 75335 NM_178789 320709 Mm.74873 NM_178789 ENSMUSG00000063296 Tmem117 B930062P21Rik transmembrane protein 117 protein-coding 0.015000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1089 chr14 26605411 26605611 + -1.05862 NA intron (NM_145969, intron 7 of 17) intron (NM_145969, intron 7 of 17) 25961 NM_145969 211922 Mm.260512 NM_145969 ENSMUSG00000040818 Dennd6a Fam116a DENN/MADD domain containing 6A protein-coding 0.015000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3261 chr7 143287090 143287290 + -1.05862 NA non-coding (NR_001461, exon 1 of 1) non-coding (NR_001461, exon 1 of 1) 9357 NR_001461 63830 Mm.356096 NR_001461 ENSMUSG00000101609 Kcnq1ot1 Kvlqt1-as|Lit1|Tssc8 KCNQ1 overlapping transcript 1 ncRNA 0.020000 0.417910 -31(TTTTTTTTTTTTAAAG,+,0.00),-6(CTTTGCATTAAAATGG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-163 chr14 26605440 26605640 + -1.05862 NA intron (NM_145969, intron 7 of 17) intron (NM_145969, intron 7 of 17) 25990 NM_145969 211922 Mm.260512 NM_145969 ENSMUSG00000040818 Dennd6a Fam116a DENN/MADD domain containing 6A protein-coding 0.015000 0.462687 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-198 chr15 28628409 28628609 + -1.05862 NA Intergenic MLT2B3|LTR|ERVL 424743 NM_133365 110082 Mm.248464 NM_133365 ENSMUSG00000022262 Dnah5 AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603 dynein, axonemal, heavy chain 5 protein-coding 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-286 chr1 170699797 170699997 + -1.05904 NA Intergenic MER5B|DNA|hAT-Charlie 55365 NM_177068 320078 Mm.287131 NM_177068 ENSMUSG00000038463 Olfml2b 1110018N05Rik|4832415H08Rik|AI467542 olfactomedin-like 2B protein-coding 0.020000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3351 chr8 57803455 57803655 + -1.05904 NA intron (NM_175032, intron 10 of 11) intron (NM_175032, intron 10 of 11) -150500 NM_144731 108150 Mm.62886 NM_144731 ENSMUSG00000031608 Galnt7 AI225872 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 0.010000 0.398010 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-381 chr3 124564847 124565047 + -1.05904 NA TTS (NM_001368235) TTS (NM_001368235) 16144 NR_160692 384775 Mm.489851 NM_001368235 ENSMUSG00000039174 1700003H04Rik 4930538K10Rik|4933400D22Rik RIKEN cDNA 1700003H04 gene protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2424 chr3 124564876 124565076 + -1.05904 NA TTS (NM_001368235) TTS (NM_001368235) 16115 NR_160692 384775 Mm.489851 NM_001368235 ENSMUSG00000039174 1700003H04Rik 4930538K10Rik|4933400D22Rik RIKEN cDNA 1700003H04 gene protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-21 chr1 19218669 19218869 + -1.05904 NA intron (NM_001025305, intron 2 of 6) intron (NM_001025305, intron 2 of 6) 6715 NM_001025305 21419 Mm.137021 NM_009334 ENSMUSG00000025927 Tfap2b AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b transcription factor AP-2 beta protein-coding 0.005000 0.343284 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-551 chr9 14801973 14802173 + -1.05904 NA intron (NM_001310728, intron 7 of 18) intron (NM_001310728, intron 7 of 18) 17419 NM_018736 17535 Mm.149071 NM_018736 ENSMUSG00000031928 Mre11a Mre11|Mre11b MRE11A homolog A, double strand break repair nuclease protein-coding 0.005000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-4 chr1 6498917 6499117 + -1.05904 NA intron (NM_001244693, intron 2 of 22) L1MA9|LINE|L1 11786 NM_001244693 240690 Mm.234612 NM_173868 ENSMUSG00000033740 St18 AV348974|Myt3|NZF-3|Nzf3|mKIAA0535 suppression of tumorigenicity 18 protein-coding 0.005000 0.383085 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-479 chr6 81446268 81446468 + -1.05904 NA Intergenic ORR1C2|LTR|ERVL-MaLR 449295 NR_106091 102465711 NR_106091 ENSMUSG00000106154 Mir7232 mmu-mir-7232 microRNA 7232 ncRNA 0.000000 0.452736 38(TCTTATTCATGCAATT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-523 chr8 56068623 56068823 + -1.05904 NA intron (NM_001368774, intron 5 of 8) intron (NM_001368774, intron 5 of 8) 128305 NM_001368774 110304 Mm.307061 NM_080438 ENSMUSG00000038257 Glra3 - glycine receptor, alpha 3 subunit protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2529 chr4 22151317 22151517 + -1.05923 NA Intergenic Intergenic -206126 NR_104380 269514 Mm.40708 NM_172988 ENSMUSG00000040410 Fbxl4 AI836810|FBL4|FBL5 F-box and leucine-rich repeat protein 4 protein-coding 0.020000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3578 chr9 79895932 79896132 + -1.05923 NA intron (NM_001357353, intron 2 of 5) RLTR12B|LTR|ERVK -65050 NM_001357354 70598 Mm.23049 NM_001081243 ENSMUSG00000034898 Filip1 5730485H21Rik|AI843021 filamin A interacting protein 1 protein-coding 0.005000 0.353234 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-583 chrX 159874665 159874865 + -1.05923 NA intron (NR_110969, intron 6 of 16) ORR1B1|LTR|ERVL-MaLR 34297 NM_001135728 58194 Mm.286495 NM_021389 ENSMUSG00000040990 Sh3kbp1 1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta SH3-domain kinase binding protein 1 protein-coding 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2662 chr4 102886971 102887171 + -1.05923 NA intron (NM_001285862, intron 6 of 19) MIR|SINE|MIR -99308 NM_001163767 67344 Mm.111346 NM_026100 ENSMUSG00000028523 Tctex1d1 1700055O19Rik Tctex1 domain containing 1 protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1098 chr14 32364269 32364469 + -1.05923 NA Intergenic Intergenic 24004 NM_001034037 67085 Mm.109099 NM_001034037 ENSMUSG00000072473 1700024G13Rik C10orf53 RIKEN cDNA 1700024G13 gene protein-coding 0.015000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3065 chr6 121144995 121145195 + -1.05923 NA Intergenic Intergenic -14073 NM_001270475 194401 Mm.122399 NM_153396 ENSMUSG00000051586 Mical3 C130040D16Rik|Mical-3|mKIAA1364 microtubule associated monooxygenase, calponin and LIM domain containing 3 protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-534 chr10 124288559 124288759 + -1.05923 NA Intergenic MLT1C|LTR|ERVL-MaLR -180415 NR_028310 75030 Mm.159403 NR_028310 ENSMUSG00000112364 4930503E24Rik - eukaryotic translation initiation factor 3, subunit I pseudogene pseudo 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2952 chr6 36306528 36306728 + -1.05923 NA Intergenic RLTR17|LTR|ERVK -81456 NM_203491 243764 Mm.448632 NM_203491 ENSMUSG00000045613 Chrm2 AChR-M2|Chrm-2|M2 cholinergic receptor, muscarinic 2, cardiac protein-coding 0.000000 0.442786 -2(ATTAGCATCAAAATAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2430 chr3 125321808 125322008 + -1.05923 NA Intergenic L1MA8|LINE|L1 -82183 NM_022565 64580 Mm.444289 NM_022565 ENSMUSG00000027971 Ndst4 4930439H17Rik N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4 protein-coding 0.000000 0.278607 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1345 chr15 67102585 67102785 + -1.05923 NA TTS (NM_009177) TTS (NM_009177) 74197 NM_009177 20442 Mm.248334 NM_009177 ENSMUSG00000013846 St3gal1 5330418N22Rik|AI467004|ST3GalI|Siat4|Siat4a|St3gal-1 ST3 beta-galactoside alpha-2,3-sialyltransferase 1 protein-coding 0.010000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1858 chr19 23817276 23817476 + -1.05923 NA intron (NM_177034, intron 1 of 12) B4|SINE|B4 58500 NM_177034 319924 Mm.22879 NM_177034 ENSMUSG00000024897 Apba1 6430513E09Rik|Lin-10|Mint|Mint1|Urop11|X11|X11alpha amyloid beta (A4) precursor protein binding, family A, member 1 protein-coding 0.020000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2841 chr5 91263056 91263256 + -1.05923 NA intron (NR_040428, intron 5 of 5) intron (NR_040428, intron 5 of 5) 19920 NR_040428 100503265 Mm.125059 NR_040428 ENSMUSG00000107198 Gm19619 - predicted gene, 19619 ncRNA 0.000000 0.383085 76(GAACTGTTATGAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2160 chr2 145338739 145338939 + -1.05923 NA intron (NM_053195, intron 2 of 16) MER5A|DNA|hAT-Charlie 96228 NM_053195 94249 Mm.217171 NM_053195 ENSMUSG00000063873 Slc24a3 NCKX3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 protein-coding 0.000000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2313 chr3 73629584 73629784 + -1.05923 NA Intergenic L1_Mus2|LINE|L1 78731 NM_009738 12038 Mm.250719 NM_009738 ENSMUSG00000027792 Bche C730038G20Rik butyrylcholinesterase protein-coding 0.015000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-102 chr11 74965626 74965826 + -1.05953 NA intron (NM_001002764, intron 8 of 18) intron (NM_001002764, intron 8 of 18) -39778 NM_001362743 27364 Mm.131443 NM_013761 ENSMUSG00000001323 Srr M100034|Rgsc34|Srs serine racemase protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3639 chr9 107278863 107279063 + -1.05953 NA intron (NM_178907, intron 2 of 10) intron (NM_178907, intron 2 of 10) 10433 NM_001316691 102626 Mm.222612 NM_178907 ENSMUSG00000032577 Mapkapk3 3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3 mitogen-activated protein kinase-activated protein kinase 3 protein-coding 0.005000 0.567164 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-658 chr11 74965708 74965908 + -1.05953 NA intron (NM_001002764, intron 8 of 18) intron (NM_001002764, intron 8 of 18) -39860 NM_001362743 27364 Mm.131443 NM_013761 ENSMUSG00000001323 Srr M100034|Rgsc34|Srs serine racemase protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2832 chr5 88851445 88851645 + -1.05953 NA Intergenic Intergenic -35715 NM_018760 54403 Mm.41044 NM_018760 ENSMUSG00000060961 Slc4a4 AI835705|NBC|NBC1 solute carrier family 4 (anion exchanger), member 4 protein-coding 0.005000 0.333333 -15(TCATTGCTATGCTATT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-297 chr19 50583128 50583328 + -1.05953 NA intron (NM_001360457, intron 1 of 26) intron (NM_001360457, intron 1 of 26) 95418 NM_001290356 58178 Mm.313672 NM_021377 ENSMUSG00000043531 Sorcs1 Sorcs|mSorCS sortilin-related VPS10 domain containing receptor 1 protein-coding 0.000000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-424 chr5 15916335 15916535 + -1.05953 NA Intergenic Intergenic -18256 NM_001110845 12293 Mm.159842 NM_009784 ENSMUSG00000040118 Cacna2d1 Ca(v)alpha2delta1|Cacna2|Cchl2a calcium channel, voltage-dependent, alpha2/delta subunit 1 protein-coding 0.005000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1628 chr17 66716937 66717137 + -1.05969 NA intron (NR_151453, intron 1 of 1) MER3|DNA|hAT-Charlie 2581 NR_151453 102639882 Mm.443262 NR_151453 1700016K05Rik - RIKEN cDNA 1700016K05 gene ncRNA 0.000000 0.333333 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-204 chr15 51761944 51762144 + -1.06008 NA Intergenic UCON22|Unknown|Unknown 103417 NM_080635 68135 Mm.289800 NM_080635 ENSMUSG00000022312 Eif3h 1110008A16Rik|40kD|9430017H16Rik|EIF3-P40|EIF3-gamma|Eif3s3 eukaryotic translation initiation factor 3, subunit H protein-coding 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1993 chr2 45751625 45751825 + -1.06008 NA Intergenic L2a|LINE|L2 55120 NR_040497 69405 Mm.396184 NR_040497 ENSMUSG00000086202 1700019E08Rik - RIKEN cDNA 1700019E08 gene ncRNA 0.000000 0.442786 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-47 chr10 24211075 24211275 + -1.06008 NA Intergenic Intergenic -12342 NM_021509 59012 Mm.285934 NM_021509 ENSMUSG00000020000 Moxd1 3230402N08Rik|MNCb-5203 monooxygenase, DBH-like 1 protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3350 chr8 57405397 57405597 + -1.06008 NA Intergenic Intergenic -50426 NM_009136 20284 Mm.12886 NM_009136 ENSMUSG00000031610 Scrg1 AW124307 scrapie responsive gene 1 protein-coding 0.010000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-62 chr10 55860074 55860274 + -1.06008 NA Intergenic Intergenic -246743 NM_001163833 73390 Mm.181475 NM_133751 ENSMUSG00000047669 Msl3l2 1700060H10Rik MSL3 like 2 protein-coding 0.010000 0.338308 -85(CTAAGCATGACTAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-23 chr1 19849870 19850070 + -1.06008 NA Intergenic Intergenic -506484 NR_045734 75028 Mm.417820 NR_045734 ENSMUSG00000089914 4930486I03Rik - RIKEN cDNA 4930486I03 gene ncRNA 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1979 chr2 36213187 36213387 + -1.06008 NA Intergenic Intergenic -17139 NM_008969 19224 Mm.275434 NM_008969 ENSMUSG00000047250 Ptgs1 COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1 prostaglandin-endoperoxide synthase 1 protein-coding 0.015000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3169 chr7 87865327 87865527 + -1.06021 NA intron (NM_001081414, intron 4 of 9) intron (NM_001081414, intron 4 of 9) 281259 NM_001081414 108071 Mm.235018 NM_001033224 ENSMUSG00000049583 Grm5 6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b glutamate receptor, metabotropic 5 protein-coding 0.005000 0.412935 34(GCAGTGTTGTGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3437 chr8 110913211 110913411 + -1.06021 NA Intergenic L1MB3|LINE|L1 -6554 NM_009179 20444 Mm.200388 NM_009179 ENSMUSG00000031749 St3gal2 AI429591|AW822065|ST3GalII|Siat5 ST3 beta-galactoside alpha-2,3-sialyltransferase 2 protein-coding 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2448 chr3 133960784 133960984 + -1.06021 NA Intergenic Intergenic -275611 NM_001004367 319478 Mm.224814 NM_001004367 ENSMUSG00000044365 Cxxc4 9330210J02Rik|C030003J12Rik|Idax CXXC finger 4 protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3703 chrX 57185627 57185827 + -1.06021 NA Intergenic Intergenic -14910 NR_038463 100502842 Mm.164733 NR_038463 ENSMUSG00000085808 Gm14718 - predicted gene 14718 ncRNA 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3615 chr9 94701451 94701651 + -1.06021 NA intron (NM_177909, intron 2 of 15) intron (NM_177909, intron 2 of 15) 31659 NM_177909 331004 Mm.326125 NM_177909 ENSMUSG00000031129 Slc9a9 5730527A11Rik|9930105B05|AI854429|Nhe9 solute carrier family 9 (sodium/hydrogen exchanger), member 9 protein-coding 0.015000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1051 chr13 116962644 116962844 + -1.06021 NA intron (NM_001081009, intron 3 of 26) intron (NM_001081009, intron 3 of 26) 62787 NM_001081009 52552 Mm.274466 NM_027272 ENSMUSG00000021725 Parp8 2810430O08Rik|ARTD16|D13Ertd275e poly (ADP-ribose) polymerase family, member 8 protein-coding 0.030000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1253 chr15 13496463 13496663 + -1.06021 NA Intergenic Intergenic -322888 NM_007666 12563 Mm.57048 NM_007666 ENSMUSG00000039385 Cdh6 cad6 cadherin 6 protein-coding 0.000000 0.353234 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-565 chr9 71694118 71694318 + -1.06021 NA intron (NM_026599, intron 8 of 18) ID_B1|SINE|B4 77384 NM_001304362 68178 Mm.99961 NM_026599 ENSMUSG00000032232 Cgnl1 4933421H10Rik|9930020M10Rik|AI503810|Jacop cingulin-like 1 protein-coding 0.015000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2116 chr2 127165710 127165910 + -1.06021 NA Intergenic Intergenic -22353 NM_001163527 73338 Mm.57559 NM_001163527 ENSMUSG00000074825 Itpripl1 1700041B20Rik inositol 1,4,5-triphosphate receptor interacting protein-like 1 protein-coding 0.015000 0.368159 -42(TTTTAAATGACAAAAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-265 chr1 158699332 158699532 + -1.06021 NA Intergenic Intergenic 193807 NR_030441 735253 NR_030441 ENSMUSG00000070103 Mir488 Mirn488|mir-488|mmu-mir-488 microRNA 488 ncRNA 0.005000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2140 chr2 138397129 138397329 + -1.06021 NA Intergenic ORR1B1|LTR|ERVL-MaLR 118736 NM_145534 228662 Mm.153405 NM_145534 ENSMUSG00000062098 Btbd3 mKIAA0952 BTB (POZ) domain containing 3 protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2101 chr2 116138766 116138966 + -1.06021 NA Intergenic Intergenic -62770 NR_033447 69974 Mm.440293 NR_033447 2810405F15Rik - RIKEN cDNA 2810405F15 gene ncRNA 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3088 chr6 145596015 145596215 + -1.06021 NA Intergenic ORR1F|LTR|ERVL-MaLR -19848 NM_009449 22147 Mm.270295 NM_009449 ENSMUSG00000067338 Tuba3b M[a]7|Tuba7 tubulin, alpha 3B protein-coding 0.020000 0.502488 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-287 chr19 4113302 4113502 + -1.06021 NA TTS (NM_001276284) TTS (NM_001276284) 8173 NM_001276284 11632 Mm.10433 NM_016666 ENSMUSG00000024847 Aip AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2 aryl-hydrocarbon receptor-interacting protein protein-coding 0.020000 0.601990 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-199 chr1 112389850 112390050 + -1.06021 NA intron (NR_157044, intron 4 of 4) intron (NR_157044, intron 4 of 4) 26968 NR_157044 102635484 NR_157044 Gm32810 Gm18406 predicted gene, 32810 ncRNA 0.000000 0.437811 -41(CCAGTGTCTTGTAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3398 chr8 86982726 86982926 + -1.06021 NA Intergenic Lx8|LINE|L1 -97568 NM_030563 80750 Mm.25117 NM_030563 ENSMUSG00000031652 N4bp1 AI481586|C81621 NEDD4 binding protein 1 protein-coding 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2386 chr3 114195233 114195433 + -1.06021 NA intron (NM_007729, intron 57 of 66) intron (NM_007729, intron 57 of 66) 164793 NM_007729 12814 Mm.209715 NM_007729 ENSMUSG00000027966 Col11a1 C530001D20Rik|cho collagen, type XI, alpha 1 protein-coding 0.000000 0.368159 69(TTTTACATAACTATGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2882 chr5 123700782 123700982 + -1.06021 NA exon (NM_027494, exon 14 of 14) exon (NM_027494, exon 14 of 14) -16521 NM_001359221 56430 Mm.241109 NM_019765 ENSMUSG00000049550 Clip1 1110007I12Rik|4631429H07Rik|AV017631|C81039|CLIP-170|CLIP170|CYLN1|Clip50|Rsn|mKIAA4046|restin CAP-GLY domain containing linker protein 1 protein-coding 0.035000 0.626866 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1363 chr15 82379774 82379974 + -1.06021 NA intron (NM_019823, intron 1 of 9) intron (NM_019823, intron 1 of 9) 386 NM_001163472 56448 Mm.474216 NM_019823 ENSMUSG00000061740 Cyp2d22 2D22 cytochrome P450, family 2, subfamily d, polypeptide 22 protein-coding 0.025000 0.601990 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2774 chr5 48959983 48960183 + -1.06021 NA intron (NM_001199244, intron 1 of 7) intron (NM_001199244, intron 1 of 7) -70526 NM_030265 80334 Mm.160172 NM_030265 ENSMUSG00000029088 Kcnip4 AV032399|Calp|Calp250|KChIP4|KChIP4a Kv channel interacting protein 4 protein-coding 0.005000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2697 chr4 134630982 134631182 + -1.06021 NA intron (NM_207237, intron 2 of 11) RMER15|LTR|ERVL -63231 NR_105829 102465216 NR_105829 ENSMUSG00000099289 Mir6403 Gm27992|mmu-mir-6403 microRNA 6403 ncRNA 0.000000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2647 chr4 96814943 96815143 + -1.06021 NA Intergenic Intergenic -29883 NM_001081284 620779 Mm.439625 NM_001081284 ENSMUSG00000078639 Gm12695 - predicted gene 12695 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-74 chr1 51277424 51277624 + -1.06021 NA intron (NR_045151, intron 2 of 4) intron (NR_045151, intron 2 of 4) -11602 NM_138741 20324 Mm.398690 NM_138741 ENSMUSG00000045954 Cavin2 Sdpr caveolae associated 2 protein-coding 0.010000 0.303483 -16(TAATTATTATGCAAAA,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-574 chr9 120350207 120350407 + -1.06067 NA intron (NM_144557, intron 2 of 16) intron (NM_144557, intron 2 of 16) 46234 NM_144557 245049 Mm.100936 NM_144557 ENSMUSG00000041794 Myrip A230081N12Rik|Slac2-c|Slac2c myosin VIIA and Rab interacting protein protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-964 chr13 54783288 54783488 + -1.06067 NA promoter-TSS (NM_001039683) promoter-TSS (NM_001039683) -610 NM_001286178 218268 Mm.425821 NM_001033269 ENSMUSG00000074895 Eif4e1b Eif4eloo|Gm273 eukaryotic translation initiation factor 4E family member 1B protein-coding 0.000000 0.432836 -1(CACTTTTAATGCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-264 chr18 22389242 22389442 + -1.06067 NA intron (NM_001167777, intron 2 of 12) intron (NM_001167777, intron 2 of 12) 44253 NM_001167777 211961 Mm.392310 NM_001167777 ENSMUSG00000045215 Asxl3 C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945 additional sex combs like 3, transcriptional regulator protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-899 chr13 15828510 15828710 + -1.06067 NA intron (NR_155430, intron 3 of 3) intron (NR_155430, intron 3 of 3) 21367 NR_046131 328190 Mm.446957 NR_046131 ENSMUSG00000113338 A530046M15Rik A530046M15 RIKEN cDNA A530046M15 gene ncRNA 0.005000 0.338308 2(ATCTGAAAAAAAATGT,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-140 chr13 43478710 43478910 + -1.06067 NA intron (NM_019930, intron 1 of 13) intron (NM_019930, intron 1 of 13) 2163 NM_019930 56705 Mm.148781 NM_019930 ENSMUSG00000038546 Ranbp9 IBAP-1|Ibap1|RanBPM RAN binding protein 9 protein-coding 0.020000 0.437811 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-143 chr13 54783266 54783466 + -1.06067 NA promoter-TSS (NM_001039683) promoter-TSS (NM_001039683) -632 NM_001286178 218268 Mm.425821 NM_001033269 ENSMUSG00000074895 Eif4e1b Eif4eloo|Gm273 eukaryotic translation initiation factor 4E family member 1B protein-coding 0.000000 0.417910 21(CACTTTTAATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-579 chr11 25531262 25531462 + -1.06131 NA Intergenic Intergenic 205255 NR_045853 71234 Mm.158627 NR_045853 ENSMUSG00000033015 4933427E13Rik - RIKEN cDNA 4933427E13 gene ncRNA 0.015000 0.407960 -76(CATGCAAATTTATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1294 chr15 36491788 36491988 + -1.06131 NA intron (NM_001358006, intron 2 of 4) intron (NM_001358006, intron 2 of 4) 4846 NM_001358006 68839 Mm.396537 NM_175134 ENSMUSG00000048307 Ankrd46 1110054N06Rik|AI314978|AI987733 ankyrin repeat domain 46 protein-coding 0.015000 0.383085 -14(ATTTTGTCATTCACAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3049 chr6 109948881 109949081 + -1.06131 NA Intergenic Intergenic -696531 NM_001346640 108073 Mm.240881 NM_177328 ENSMUSG00000056755 Grm7 6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7 glutamate receptor, metabotropic 7 protein-coding 0.005000 0.318408 22(CCATTGTTATTAAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-173 chr14 68822360 68822560 + -1.06131 NA Intergenic L2c|LINE|L2 -166618 NM_183366 13522 Mm.117450 NM_010082 ENSMUSG00000014725 Adam28 C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII a disintegrin and metallopeptidase domain 28 protein-coding 0.005000 0.388060 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-92 chr11 25531225 25531425 + -1.06131 NA Intergenic Intergenic 205218 NR_045853 71234 Mm.158627 NR_045853 ENSMUSG00000033015 4933427E13Rik - RIKEN cDNA 4933427E13 gene ncRNA 0.020000 0.398010 -39(CATGCAAATTTATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2996 chr6 73944329 73944529 + -1.06131 NA Intergenic L1_Mur3|LINE|L1 -335756 NR_157242 102634075 Mm.78553 NR_157242 ENSMUSG00000107441 Gm31747 - predicted gene, 31747 ncRNA 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2473 chr3 143993990 143994190 + -1.06131 NA Intergenic MTC|LTR|ERVL-MaLR 208242 NM_001161770 16911 Mm.29187 NM_010723 ENSMUSG00000028266 Lmo4 A730077C12Rik|Crp3|Etohi4 LIM domain only 4 protein-coding 0.010000 0.383085 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-464 chr6 22932528 22932728 + -1.06131 NA intron (NM_001081306, intron 2 of 29) intron (NM_001081306, intron 2 of 29) 57126 NM_001361349 19283 Mm.41639 NM_011219 ENSMUSG00000068748 Ptprz1 AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta protein tyrosine phosphatase, receptor type Z, polypeptide 1 protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-47 chr1 33148673 33148873 + -1.06131 NA Intergenic Intergenic 521021 NM_008922 19076 Mm.27705 NM_008922 ENSMUSG00000026134 Prim2 AI323589 DNA primase, p58 subunit protein-coding 0.005000 0.328358 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-328 chr2 110936601 110936801 + -1.06159 NA intron (NM_001355246, intron 1 of 3) intron (NM_001355246, intron 1 of 3) 13543 NM_001355245 228432 Mm.483325 NM_001081556 ENSMUSG00000074968 Ano3 AI838058|B230324K02Rik|Tmem16c anoctamin 3 protein-coding 0.000000 0.268657 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1612 chr17 51584468 51584668 + -1.06159 NA intron (NR_037264, intron 3 of 4) intron (NR_037264, intron 3 of 4) -136299 NR_046166 328837 Mm.236143 NR_046166 ENSMUSG00000117204 C330011F03Rik C330011F03 RIKEN cDNA C330011F03 gene ncRNA 0.005000 0.422886 66(CATAAATAAGGCATG,+,0.00),66(CATAAATAAGGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2182 chr2 161825055 161825255 + -1.06159 NA intron (NM_001291151, intron 9 of 30) intron (NM_001291151, intron 9 of 30) -565658 NR_040617 77645 Mm.447752 NR_040617 ENSMUSG00000084919 Ptprtos C330008G21Rik protein tyrosine phosphatase, receptor type T, opposite strand ncRNA 0.000000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2051 chr2 91187631 91187831 + -1.06159 NA intron (NM_001177730, intron 7 of 9) intron (NM_001177730, intron 7 of 9) -4684 NM_001177719 228355 Mm.36410 NM_145527 ENSMUSG00000040687 Madd 9630059K23Rik|IG20 MAP-kinase activating death domain protein-coding 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-690 chr11 97950132 97950332 + -1.06159 NA intron (NM_028199, intron 7 of 13) intron (NM_028199, intron 7 of 13) 36214 NM_001163608 72324 Mm.39617 NM_028199 ENSMUSG00000017417 Plxdc1 2410003I07Rik|AI848450|Tem7 plexin domain containing 1 protein-coding 0.030000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-664 chr11 80873166 80873366 + -1.06159 NA Intergenic Intergenic 14877 NM_029367 75622 Mm.26988 NM_029367 ENSMUSG00000053184 Spaca3 1700025M08Rik|ALLP17|Lyc3|SLLP1|mSLLP1 sperm acrosome associated 3 protein-coding 0.010000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2265 chr3 52601628 52601828 + -1.06159 NA Intergenic Intergenic 84764 NR_153344 102631981 Mm.394225 NR_153344 Gm30173 - predicted gene, 30173 ncRNA 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2581 chr4 53447620 53447820 + -1.06159 NA intron (NM_133891, intron 1 of 15) intron (NM_133891, intron 1 of 15) 7307 NM_001159633 100434 Mm.482207 NM_133891 ENSMUSG00000028412 Slc44a1 2210409B22Rik|4833416H08Rik|AW547365|CHTL1|CTL1|Cdw92 solute carrier family 44, member 1 protein-coding 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2696 chr4 131415605 131415805 + -1.06159 NA Intergenic Intergenic -405231 NR_130167 77835 Mm.348412 NR_130167 ENSMUSG00000086262 A930031H19Rik A930004I12Rik RIKEN cDNA A930031H19 gene ncRNA 0.010000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-267 chr1 158815583 158815783 + -1.06159 NA intron (NM_001085376, intron 12 of 22) ORR1C2|LTR|ERVL-MaLR 142492 NM_001085376 23850 Mm.458621 NM_001085376 ENSMUSG00000073530 Pappa2 PAPP-A2|PLAC3|Pappe pappalysin 2 protein-coding 0.000000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-971 chr13 60619783 60619983 + -1.06159 NA intron (NM_134062, intron 2 of 26) intron (NM_134062, intron 2 of 26) 17672 NM_134062 69635 Mm.24103 NM_029653 ENSMUSG00000021559 Dapk1 D13Ucla1|DAP-Kinase death associated protein kinase 1 protein-coding 0.025000 0.567164 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2693 chr4 128678778 128678978 + -1.06159 NA intron (NM_001195130, intron 1 of 14) intron (NM_001195130, intron 1 of 14) -9860 NM_018774 54383 Mm.473738 NM_018774 ENSMUSG00000028796 Phc2 A3galt2|AA415044|D130050K19Rik|D4Ertd810e|Edr2|Mph2|p36 polyhomeotic 2 protein-coding 0.030000 0.582090 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-640 chr11 63745633 63745833 + -1.06159 NA Intergenic ORR1C2|LTR|ERVL-MaLR 176551 NM_018805 54710 Mm.274426 NM_018805 ENSMUSG00000070407 Hs3st3b1 3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 protein-coding 0.010000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3460 chr8 122706310 122706510 + -1.06159 NA Intergenic Intergenic -7301 NM_009824 12398 Mm.194339 NM_009824 ENSMUSG00000006362 Cbfa2t3 A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2 CBFA2/RUNX1 translocation partner 3 protein-coding 0.020000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2594 chr4 66418335 66418535 + -1.06159 NA Intergenic L2a|LINE|L2 -13952 NM_207109 56079 Mm.445312 NM_019514 ENSMUSG00000028373 Astn2 1d8|Astnl|bM452J22.1 astrotactin 2 protein-coding 0.005000 0.358209 -59(ATTTCCAAGAGCATAC,-,0.00),84(TATTTGTTAAGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2870 chr5 115614930 115615130 + -1.06159 NA intron (NM_172719, intron 50 of 57) intron (NM_172719, intron 50 of 57) 16786 NR_027810 66123 Mm.133063 NM_021417 ENSMUSG00000107121 1110006O24Rik - RIKEN cDNA 1110006O24 gene ncRNA 0.030000 0.646766 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1966 chr2 24901947 24902147 + -1.06159 NA intron (NM_001012518, intron 1 of 26) Lx8|LINE|L1 17562 NM_172545 77683 Mm.24176 NM_172545 ENSMUSG00000036893 Ehmt1 9230102N17Rik|D330003E03|Eu-HMTase1|GLP|GLP1|KMT1D|mKIAA1876 euchromatic histone methyltransferase 1 protein-coding 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-477 chr10 90609278 90609478 + -1.06159 NA intron (NM_001359242, intron 1 of 10) intron (NM_001359242, intron 1 of 10) 32687 NM_181398 77531 Mm.440605 NM_181398 ENSMUSG00000058589 Anks1b AIDA-1|AIDA-1b|C030032C09Rik|E530015N03Rik|EB-1|Gm10937|Gm1555 ankyrin repeat and sterile alpha motif domain containing 1B protein-coding 0.000000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2419 chr3 123728031 123728231 + -1.06159 NA Intergenic Intergenic -37279 NR_121616 83398 Mm.443908 NM_031186 ENSMUSG00000027977 Ndst3 4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 protein-coding 0.010000 0.363184 -50(ATTTACATAAAAGATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2498 chr3 154880932 154881132 + -1.06159 NA intron (NM_177066, intron 17 of 24) intron (NM_177066, intron 17 of 24) 169899 NM_175176 209601 Mm.331454 NM_175176 ENSMUSG00000078161 Erich3 1700013E18Rik|4922501L14Rik|5031409G23Rik|AI596448|Gm133 glutamate rich 3 protein-coding 0.010000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2046 chr2 81323961 81324161 + -1.06159 NA Intergenic Intergenic 684797 NM_001190179 69482 Mm.29200 NM_027091 ENSMUSG00000026999 Nup35 2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44 nucleoporin 35 protein-coding 0.010000 0.407960 -10(ATTACAACGACAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2516 chr4 11759965 11760165 + -1.06198 NA intron (NM_019753, intron 1 of 17) intron (NM_019753, intron 1 of 17) 1908 NM_019753 12557 Mm.33402 NM_019753 ENSMUSG00000028217 Cdh17 HPT-1|HPT-1/LI cadherin 17 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1539 chr16 85422959 85423159 + -1.06198 NA Intergenic ORR1E|LTR|ERVL-MaLR 127314 NM_144853 224405 Mm.213203 NM_144853 ENSMUSG00000041134 Cyyr1 - cysteine and tyrosine-rich protein 1 protein-coding 0.005000 0.422886 79(TAATTCCCATGGAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-200 chr15 44462816 44463016 + -1.06198 NA intron (NM_138674, intron 2 of 77) intron (NM_138674, intron 2 of 77) 5463 NM_138674 192190 Mm.211494 NM_138674 ENSMUSG00000038725 Pkhd1l1 AB055648|PKHDL1 polycystic kidney and hepatic disease 1-like 1 protein-coding 0.000000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-88 chr11 6679243 6679443 + -1.06268 NA Intergenic Intergenic -19107 NR_028586 100041311 Mm.388018 NR_028586 ENSMUSG00000086373 Gm11978 - predicted gene 11978 pseudo 0.005000 0.402985 8(CCTTTCTTATGAATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3236 chr7 131236207 131236407 + -1.06268 NA intron (NM_001370825, intron 16 of 68) intron (NM_001370825, intron 16 of 68) 61905 NM_001370825 71395 Mm.118845 NM_175166 ENSMUSG00000006204 5430419D17Rik - RIKEN cDNA 5430419D17 gene protein-coding 0.000000 0.343284 2(CTTTTTTTTTTTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-545 chr11 6679263 6679463 + -1.06268 NA Intergenic Intergenic -19127 NR_028586 100041311 Mm.388018 NR_028586 ENSMUSG00000086373 Gm11978 - predicted gene 11978 pseudo 0.005000 0.373134 -12(CCTTTCTTATGAATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3764 chrX 155218413 155218613 + -1.06268 NA Intergenic Intergenic -2064 NM_001291865 20229 Mm.2734 NM_009121 ENSMUSG00000025283 Sat1 AA617398|SSAT|Sat spermidine/spermine N1-acetyl transferase 1 protein-coding 0.005000 0.393035 -6(TGTTTTTTTTGCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3062 chr6 118444185 118444385 + -1.06340 NA intron (NM_001361900, intron 2 of 4) L1MA5A|LINE|L1 11221 NM_001361900 72720 Mm.212572 NM_028335 ENSMUSG00000030145 Zfp248 2810037F07Rik|E130106N01Rik zinc finger protein 248 protein-coding 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2296 chr3 65262567 65262767 + -1.06340 NA intron (NM_001289450, intron 2 of 14) intron (NM_001289450, intron 2 of 14) 40018 NR_126080 102637797 Mm.446731 NR_126080 ENSMUSG00000104093 A330015K06Rik - RIKEN cDNA A330015K06 gene ncRNA 0.010000 0.482587 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-271 chr18 36450084 36450284 + -1.06340 NA intron (NM_026027, intron 2 of 3) intron (NM_026027, intron 2 of 3) 4311 NM_026027 67199 Mm.30184 NM_026027 ENSMUSG00000024346 Pfdn1 2700086I23Rik|AA408327|AU044714 prefoldin 1 protein-coding 0.010000 0.457711 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-533 chr8 83159745 83159945 + -1.06346 NA Intergenic RLTR11A2|LTR|ERVK -5507 NM_027758 71310 Mm.24031 NM_027758 ENSMUSG00000031709 Tbc1d9 4933431N12Rik|AI847101|AW490653|C76116 TBC1 domain family, member 9 protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2988 chr6 66432591 66432791 + -1.06346 NA Intergenic MLTR25A|LTR|ERVK -102530 NM_019499 56150 Mm.489653 NM_019499 ENSMUSG00000029910 Mad2l1 AA673185|MAD2 MAD2 mitotic arrest deficient-like 1 protein-coding 0.000000 0.388060 22(GCTTTCTTTTTCTAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-233 chr1 136780602 136780802 + -1.06346 NA Intergenic Intergenic 84491 NR_037986 100503474 Mm.428276 NR_037986 Platr22 Gm16880 pluripotency associated transcript 22 ncRNA 0.020000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2947 chr6 28561293 28561493 + -1.06346 NA intron (NM_019776, intron 10 of 23) ORR1A3|LTR|ERVL-MaLR 81045 NM_019776 56463 Mm.439987 NM_019776 ENSMUSG00000001424 Snd1 AL033314|Tudor-SN staphylococcal nuclease and tudor domain containing 1 protein-coding 0.000000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2268 chr3 54845225 54845425 + -1.06346 NA Intergenic Charlie7|DNA|hAT-Charlie -37534 NM_133231 170767 Mm.185735 NM_133231 ENSMUSG00000036615 Rfxap 5730495K23Rik regulatory factor X-associated protein protein-coding 0.000000 0.303483 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2439 chr3 128890193 128890393 + -1.06346 NA Intergenic Intergenic -309585 NM_001286942 18741 Mm.246804 NM_011098 ENSMUSG00000028023 Pitx2 9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg paired-like homeodomain transcription factor 2 protein-coding 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3279 chr8 12779604 12779804 + -1.06346 NA intron (NR_121603, intron 1 of 29) intron (NR_121603, intron 1 of 29) 22688 NM_001293668 50770 Mm.257837 NM_015804 ENSMUSG00000031441 Atp11a 4930558F19Rik|AU040868|Atpc1h|Ih ATPase, class VI, type 11A protein-coding 0.010000 0.452736 -49(ATTTACAATGGAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1148 chr14 72631412 72631612 + -1.06346 NA intron (NM_207636, intron 3 of 25) B4A|SINE|B4 78491 NM_207636 319448 Mm.205421 NM_207636 ENSMUSG00000033487 Fndc3a 1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys fibronectin type III domain containing 3A protein-coding 0.015000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3459 chr8 122706066 122706266 + -1.06346 NA Intergenic Intergenic -7057 NM_009824 12398 Mm.194339 NM_009824 ENSMUSG00000006362 Cbfa2t3 A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2 CBFA2/RUNX1 translocation partner 3 protein-coding 0.020000 0.552239 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2758 chr5 34729082 34729282 + -1.06346 NA intron (NM_019497, intron 9 of 15) intron (NM_019497, intron 9 of 15) 3790 NR_130328 100316674 NR_130328 ENSMUSG00000080556 Mir467g Mirn467g|mmu-mir-467g microRNA 467g ncRNA 0.000000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2645 chr4 95846101 95846301 + -1.06346 NA intron (NM_001113412, intron 13 of 15) intron (NM_001113412, intron 13 of 15) 120834 NR_045777 319247 Mm.473527 NM_175680 ENSMUSG00000044125 9530080O11Rik - RIKEN cDNA 9530080O11 gene ncRNA 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-587 chr11 29220370 29220570 + -1.06346 NA non-coding (NR_156485, exon 17 of 17) non-coding (NR_156485, exon 17 of 17) 26802 NM_025740 216618 Mm.128663 NM_025740 ENSMUSG00000020462 Cfap36 2300003H10|4931428D14Rik|Ccdc104 cilia and flagella associated protein 36 protein-coding 0.000000 0.318408 -60(CTTTTGTTATGTTAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1422 chr16 15926390 15926590 + -1.06346 NA intron (NM_001355731, intron 10 of 18) intron (NM_001355731, intron 10 of 18) 39204 NM_007679 12609 Mm.347407 NM_007679 ENSMUSG00000071637 Cebpd c/EBPdelta CCAAT/enhancer binding protein (C/EBP), delta protein-coding 0.000000 0.422886 -5(CTTCCATATGCATG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3068 chr6 122570981 122571181 + -1.06346 NA Intergenic Intergenic 17272 NM_009645 11628 Mm.391503 NM_009645 ENSMUSG00000040627 Aicda Aid|Arp2 activation-induced cytidine deaminase protein-coding 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2230 chr3 24629335 24629535 + -1.06346 NA intron (NM_001326288, intron 1 of 13) intron (NM_001326288, intron 1 of 13) 154571 NM_001326288 635702 Mm.448351 NM_001326288 ENSMUSG00000102758 Naaladl2 2810043G22Rik|EG635702|Gm1021 N-acetylated alpha-linked acidic dipeptidase-like 2 protein-coding 0.010000 0.258706 59(ATTTACATAATACTGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1298 chr15 40995147 40995347 + -1.06346 NA intron (NM_001356998, intron 4 of 6) intron (NM_001356998, intron 4 of 6) -178454 NR_151516 100418302 NR_151516 4930555K19Rik - leucine rich repeat and sterile alpha motif containing 1 pseudogene pseudo 0.010000 0.378109 20(ATTTTCTTTTGCAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1119 chr14 58478352 58478552 + -1.06346 NA Intergenic Intergenic 405766 NM_013518 14180 Mm.8846 NM_013518 ENSMUSG00000021974 Fgf9 Eks fibroblast growth factor 9 protein-coding 0.010000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3147 chr7 75702929 75703129 + -1.06346 NA intron (NM_029332, intron 16 of 36) MIRb|SINE|MIR -145309 NM_182782 207952 Mm.206223 NM_029652 ENSMUSG00000055652 Klhl25 2810402K13Rik|BC027373|Enc-1 kelch-like 25 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1523 chr16 76134594 76134794 + -1.06346 NA intron (NR_040575, intron 1 of 2) intron (NR_040575, intron 1 of 2) 12081 NR_040575 78215 Mm.243885 NR_040575 ENSMUSG00000116695 4930578N18Rik - RIKEN cDNA 4930578N18 gene ncRNA 0.005000 0.333333 -12(ATTAGAACCAGAATGC,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-406 chr4 72416123 72416323 + -1.06346 NA Intergenic Intergenic 214979 NR_027923 68285 Mm.37541 NR_027923 C630043F03Rik AI851307 RIKEN cDNA C630043F03 gene ncRNA 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3564 chr9 68861867 68862067 + -1.06346 NA intron (NM_013646, intron 1 of 10) MIR|SINE|MIR 96621 NR_033299 320440 Mm.483129 NM_177159 9530091C08Rik - RIKEN cDNA 9530091C08 gene ncRNA 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3265 chr8 5617515 5617715 + -1.06346 NA Intergenic Intergenic -512328 NM_011388 20494 Mm.3500 NM_011388 ENSMUSG00000023073 Slc10a2 9130221J18Rik|AI605518|ASBT|IBAT|ISBT solute carrier family 10, member 2 protein-coding 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3036 chr6 102641238 102641438 + -1.06346 NA Intergenic Intergenic -153046 NR_105792 102466636 NR_105792 ENSMUSG00000098533 Mir6373 Gm27870|mmu-mir-6373 microRNA 6373 ncRNA 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3653 chr9 116469019 116469219 + -1.06346 NA Intergenic Intergenic 279939 NR_152204 100043817 Mm.404276 NR_152204 Gm4668 - predicted gene 4668 ncRNA 0.010000 0.492537 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-352 chr3 34825038 34825238 + -1.06346 NA Intergenic Intergenic 53063 NR_110488 102638436 Mm.261793 NR_110488 ENSMUSG00000106519 Gm38509 Peril predicted gene, 38509 ncRNA 0.035000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-829 chr12 81100373 81100573 + -1.06346 NA intron (NM_001146217, intron 1 of 12) intron (NM_001146217, intron 1 of 12) -65678 NR_037227 100526532 NR_037227 ENSMUSG00000092673 Mir3067 mir-3067|mmu-mir-3067 microRNA 3067 ncRNA 0.010000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-5 chr1 6801595 6801795 + -1.06346 NA intron (NR_045189, intron 6 of 22) intron (NR_045189, intron 6 of 22) 71644 NR_045188 240690 Mm.234612 NM_173868 ENSMUSG00000033740 St18 AV348974|Myt3|NZF-3|Nzf3|mKIAA0535 suppression of tumorigenicity 18 protein-coding 0.000000 0.343284 82(AATTCATATTCAAG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-321 chr2 79124360 79124560 + -1.06346 NA Intergenic Intergenic -130966 NM_010576 16401 Mm.31903 NM_010576 ENSMUSG00000027009 Itga4 CD49D|Itga4B integrin alpha 4 protein-coding 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1507 chr16 66852541 66852741 + -1.06414 NA intron (NM_001145977, intron 2 of 8) RLTR16|LTR|ERVK 195523 NR_040512 75501 Mm.394300 NR_040512 ENSMUSG00000092599 1700010K23Rik - RIKEN cDNA 1700010K23 gene ncRNA 0.005000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-760 chr12 33286294 33286494 + -1.06414 NA Intergenic MER74A|LTR|ERVL -16121 NM_001033436 380753 Mm.41540 NM_028139 ENSMUSG00000020564 Atxn7l1 2810423G08Rik|Atxn7l4 ataxin 7-like 1 protein-coding 0.025000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-988 chr13 81260439 81260639 + -1.06490 NA intron (NM_054053, intron 85 of 89) intron (NM_054053, intron 85 of 89) 296465 NR_015587 319983 Mm.343027 NR_015587 ENSMUSG00000097098 9330111N05Rik - RIKEN cDNA 9330111N05 gene ncRNA 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1021 chr13 101109665 101109865 + -1.06490 NA Intergenic Intergenic -122362 NR_046158 328324 Mm.402274 NR_046158 ENSMUSG00000114590 5930438M14Rik 5930438M14 RIKEN cDNA 5930438M14 gene ncRNA 0.010000 0.348259 50(TTAAGCATCACAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-769 chr12 39699421 39699621 + -1.06490 NA Intergenic Intergenic 337855 NM_007487 11861 Mm.12723 NM_007487 ENSMUSG00000047446 Arl4a AI467555|Arl4 ADP-ribosylation factor-like 4A protein-coding 0.005000 0.412935 -72(GCATTATAATGCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1242 chr15 7906417 7906617 + -1.06596 NA intron (NM_001081402, intron 13 of 17) intron (NM_001081402, intron 13 of 17) 90967 NM_001301357 14573 Mm.4679 NM_010275 ENSMUSG00000022144 Gdnf AI385739|ATF glial cell line derived neurotrophic factor protein-coding 0.010000 0.358209 -77(AATACATAATTCAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-674 chr11 88524664 88524864 + -1.06596 NA intron (NM_054043, intron 6 of 13) intron (NM_054043, intron 6 of 13) -94487 NR_131025 68397 Mm.426889 NR_131025 0610039H22Rik - RIKEN cDNA 0610039H22 gene ncRNA 0.000000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3188 chr7 98934433 98934633 + -1.06596 NA intron (NM_178635, intron 13 of 14) intron (NM_178635, intron 13 of 14) 95688 NM_009519 22411 Mm.22182 NM_009519 ENSMUSG00000015957 Wnt11 - wingless-type MMTV integration site family, member 11 protein-coding 0.015000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3224 chr7 123714269 123714469 + -1.06596 NA Intergenic ORR1B1|LTR|ERVL-MaLR -213743 NM_001081329 210162 Mm.135397 NM_175435 ENSMUSG00000030757 Zkscan2 9430065N20Rik|AW493225|Zfp694 zinc finger with KRAB and SCAN domains 2 protein-coding 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3287 chr8 20557878 20558078 + -1.06596 NA Intergenic Intergenic -56949 NM_001270553 100861668 Mm.491087 NM_001270553 ENSMUSG00000095294 Gm21119 - predicted gene, 21119 protein-coding 0.065000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3086 chr6 143385826 143386026 + -1.06596 NA Intergenic Intergenic 140038 NR_027803 52285 Mm.354898 NM_001033129 D6Ertd474e 1700001I24Rik|AU023129 DNA segment, Chr 6, ERATO Doi 474, expressed ncRNA 0.020000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-246 chr1 145752759 145752959 + -1.06596 NA Intergenic Intergenic -742770 NM_001357571 215378 Mm.441817 NM_153539 ENSMUSG00000035131 Brinp3 B830045N13Rik|Fam5c bone morphogenetic protein/retinoic acid inducible neural specific 3 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-941 chr13 37751339 37751539 + -1.06596 NA Intergenic Intergenic -74599 NM_026830 68750 Mm.491109 NM_026830 ENSMUSG00000039087 Rreb1 1110037N09Rik|AA414966|B930013M22Rik ras responsive element binding protein 1 protein-coding 0.025000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2105 chr2 120007888 120008088 + -1.06596 NA intron (NM_001355293, intron 2 of 30) intron (NM_001355293, intron 2 of 30) -9529 NR_106125 102466842 NR_106125 ENSMUSG00000098632 Mir7665 Gm27478|mmu-mir-7665 microRNA 7665 ncRNA 0.005000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2177 chr2 156929521 156929721 + -1.06596 NA intron (NM_013865, intron 15 of 15) intron (NM_013865, intron 15 of 15) -42400 NM_029983 77799 Mm.29264 NM_029983 ENSMUSG00000027636 Sla2 A930009E21Rik|AI430952|SLAP-2|SLAP2 Src-like-adaptor 2 protein-coding 0.010000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3687 chrX 38334758 38334958 + -1.06596 NA 3' UTR (NM_133690, exon 8 of 8) 3' UTR (NM_133690, exon 8 of 8) 18736 NM_001290389 67821 Mm.60134 NM_133690 ENSMUSG00000016327 Atp1b4 1110020B02Rik ATPase, (Na+)/K+ transporting, beta 4 polypeptide protein-coding 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2501 chr3 158774208 158774408 + -1.06596 NA Intergenic Intergenic -212547 NM_001370781 242274 Mm.132162 NM_001081358 ENSMUSG00000028176 Lrrc7 AK122498|densin|mKIAA1365 leucine rich repeat containing 7 protein-coding 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1311 chr15 49163412 49163612 + -1.06596 NA Intergenic ORR1D2|LTR|ERVL-MaLR -371523 NM_001081391 239420 Mm.309363 NM_001081391 ENSMUSG00000022311 Csmd3 4930500N14Rik|mKIAA1894 CUB and Sushi multiple domains 3 protein-coding 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1625 chr17 62614747 62614947 + -1.06596 NA intron (NM_207654, intron 2 of 4) intron (NM_207654, intron 2 of 4) 266470 NM_207654 13640 Mm.7978 NM_010109 ENSMUSG00000048915 Efna5 AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS ephrin A5 protein-coding 0.015000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1152 chr14 74029257 74029457 + -1.06596 NA Intergenic L1M5|LINE|L1 -326170 NR_046059 74425 Mm.399498 NR_046059 ENSMUSG00000115845 4933402J15Rik - RIKEN cDNA 4933402J15 gene ncRNA 0.005000 0.258706 -82(ATTTCTATGACAGTGA,-,0.00),-44(ATTTTAATGACATTGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1053 chr13 119177800 119178000 + -1.06596 NA Intergenic UCON31|Unknown|Unknown 231111 NM_008710 18115 Mm.132584 NM_008710 ENSMUSG00000116207 Nnt 4930423F13Rik|AI323702|BB168308 nicotinamide nucleotide transhydrogenase protein-coding 0.010000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3746 chrX 139543762 139543962 + -1.06596 NA intron (NM_001358686, intron 11 of 12) intron (NM_001358686, intron 11 of 12) -19478 NM_001254761 66889 Mm.27764 NM_023270 ENSMUSG00000031438 Rnf128 1300002C13Rik|AI987883|GRAIL|Greul1 ring finger protein 128 protein-coding 0.025000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2837 chr5 90402811 90403011 + -1.06596 NA Intergenic Intergenic 35914 NR_045618 791294 Mm.30508 NR_045618 ENSMUSG00000054945 Gm9958 - predicted gene 9958 ncRNA 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3078 chr6 135692581 135692781 + -1.06596 NA Intergenic L1MB2|LINE|L1 33768 NR_126088 75024 Mm.399147 NR_126088 ENSMUSG00000107396 4930425L21Rik 4930473P14Rik RIKEN cDNA 4930425L21 gene ncRNA 0.035000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1542 chr16 85542637 85542837 + -1.06596 NA intron (NM_144853, intron 2 of 3) intron (NM_144853, intron 2 of 3) 7636 NM_144853 224405 Mm.213203 NM_144853 ENSMUSG00000041134 Cyyr1 - cysteine and tyrosine-rich protein 1 protein-coding 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1499 chr16 65471410 65471610 + -1.06596 NA Intergenic Intergenic -49002 NM_008849 18736 Mm.355440 NM_008849 ENSMUSG00000004842 Pou1f1 GHF-1|Hmp1|Pit-1|Pit1|Pit1-rs1|dw|dwarf POU domain, class 1, transcription factor 1 protein-coding 0.000000 0.378109 73(GATGCATATTCACT,+,0.00),73(GATGCATATTCACT,-,0.00) 34(ATCAACATGATAAACT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-656 chr11 70415574 70415774 + -1.06596 NA Intergenic RLTR17B_Mm|LTR|ERVK -5643 NM_029231 75273 Mm.340601 NM_029231 ENSMUSG00000018921 Pelp1 4930563C04Rik|MNAR proline, glutamic acid and leucine rich protein 1 protein-coding 0.010000 0.388060 11(TGTACATATGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2118 chr2 127634133 127634333 + -1.06596 NA 3' UTR (NM_010762, exon 4 of 4) 3' UTR (NM_010762, exon 4 of 4) 22462 NM_010762 17153 Mm.39040 NM_010762 ENSMUSG00000027375 Mal Mpv17|Vip17 myelin and lymphocyte protein, T cell differentiation protein protein-coding 0.015000 0.492537 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-241 chr16 85542706 85542906 + -1.06596 NA intron (NM_144853, intron 2 of 3) intron (NM_144853, intron 2 of 3) 7567 NM_144853 224405 Mm.213203 NM_144853 ENSMUSG00000041134 Cyyr1 - cysteine and tyrosine-rich protein 1 protein-coding 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3324 chr8 41038217 41038417 + -1.06596 NA intron (NM_001005863, intron 5 of 13) intron (NM_001005863, intron 5 of 13) 3614 NM_001005865 102103 Mm.149438 NM_001005863 ENSMUSG00000045636 Mtus1 AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288 mitochondrial tumor suppressor 1 protein-coding 0.010000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-326 chr10 5158889 5159089 + -1.06596 NA intron (NM_001079686, intron 9 of 54) intron (NM_001079686, intron 9 of 54) 35718 NM_001079686 64009 Mm.331626 NM_022027 ENSMUSG00000096054 Syne1 8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1 spectrin repeat containing, nuclear envelope 1 protein-coding 0.010000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2113 chr2 125063172 125063372 + -1.06596 NA Intergenic Intergenic -4855 NM_175034 317750 Mm.330538 NM_175034 ENSMUSG00000035183 Slc24a5 F630045L20Rik|JSX|NCKX5|NCX5|Oca6 solute carrier family 24, member 5 protein-coding 0.010000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-50 chr1 33971601 33971801 + -1.06596 NA intron (NM_001276764, intron 3 of 102) intron (NM_001276764, intron 3 of 102) -39894 NM_134448 13518 Mm.336625 NM_010081 ENSMUSG00000026131 Dst 2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339 dystonin protein-coding 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1406 chr16 5000527 5000727 + -1.06596 NA Intergenic RLTR22_Mur|LTR|ERVK -2775 NM_029374 71089 Mm.87382 NM_027669 ENSMUSG00000022542 Sept12 1700028G04Rik|4933413B09Rik|Septin12 septin 12 protein-coding 0.000000 0.358209 2(TATACATATTCATT,+,0.00),2(TATACATATTCATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2552 chr4 35417965 35418165 + -1.06596 NA Intergenic Intergenic -192229 NM_028466 73205 Mm.331544 NM_028466 ENSMUSG00000028300 C9orf72 3110043O21Rik|AI840585 C9orf72, member of C9orf72-SMCR8 complex protein-coding 0.000000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-880 chr13 4586113 4586313 + -1.06596 NA intron (NM_029901, intron 8 of 8) intron (NM_029901, intron 8 of 8) 12138 NM_029901 77337 Mm.27085 NM_029901 ENSMUSG00000021207 Akr1c21 9430025F20Rik|AI315367 aldo-keto reductase family 1, member C21 protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-466 chr10 83952227 83952427 + -1.06596 NA Intergenic Intergenic 148370 NR_152790 102637349 Mm.402869 NR_152790 ENSMUSG00000111049 Gm34184 - predicted gene, 34184 ncRNA 0.010000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3513 chr9 32806246 32806446 + -1.06596 NA Intergenic Intergenic 110304 NM_011808 23871 Mm.292415 NM_011808 ENSMUSG00000032035 Ets1 AI196000|AI448617|D230050P06|Ets-1|Tpl1|vs E26 avian leukemia oncogene 1, 5' domain protein-coding 0.010000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-585 chrX 163849577 163849777 + -1.06596 NA Intergenic Intergenic -59340 NM_026887 108012 Mm.426783 NM_026887 ENSMUSG00000031367 Ap1s2 1500012A13Rik|AI853648|EST1 adaptor-related protein complex 1, sigma 2 subunit protein-coding 0.005000 0.308458 6(ACATTTATTTGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-263 chr1 157339320 157339520 + -1.06596 NA intron (NM_177644, intron 1 of 17) intron (NM_177644, intron 1 of 17) -72932 NR_027984 69953 Mm.286863 NM_027274 ENSMUSG00000049881 2810025M15Rik AI429618 RIKEN cDNA 2810025M15 gene ncRNA 0.000000 0.338308 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-32 chr1 171540291 171540491 + -1.06596 NA Intergenic Intergenic -5097 NM_010584 16429 Mm.247426 NM_010584 ENSMUSG00000038209 Itln1 IntL|Itln|Itln2|Itln3|Itln5|Itlna|Lfr intelectin 1 (galactofuranose binding) protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3218 chr7 121678119 121678319 + -1.06596 NA intron (NM_001033173, intron 3 of 15) intron (NM_001033173, intron 3 of 15) 29223 NM_001033173 76179 Mm.122538 NM_001033173 ENSMUSG00000063317 Usp31 6330567E21Rik|mKIAA1203 ubiquitin specific peptidase 31 protein-coding 0.000000 0.368159 10(ATTAACATAACATAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1489 chr16 59420992 59421192 + -1.06596 NA intron (NM_001081190, intron 2 of 8) intron (NM_001081190, intron 2 of 8) 13710 NM_001081190 328699 Mm.451970 NM_001081190 ENSMUSG00000074991 Gabrr3 - gamma-aminobutyric acid (GABA) receptor, rho 3 protein-coding 0.025000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-218 chr1 125061228 125061428 + -1.06596 NA Intergenic Intergenic 374399 NM_001205386 74117 Mm.183102 NM_023735 ENSMUSG00000026341 Actr3 1200003A09Rik|Arp3 ARP3 actin-related protein 3 protein-coding 0.000000 0.288557 0(AATGCATTTTAATG,-,0.00) -29(TTATTGTTTTACAAAT,+,0.00),3(GCATTTTAATGTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-181 chr1 105584476 105584676 + -1.06596 NA intron (NM_013784, intron 21 of 30) intron (NM_013784, intron 21 of 30) 79100 NM_013784 27392 Mm.268911 NM_013784 ENSMUSG00000056536 Pign Gm20308|PIG-N phosphatidylinositol glycan anchor biosynthesis, class N protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3438 chr8 111015618 111015818 + -1.06596 NA TTS (NR_039583) TTS (NR_039583) 812 NR_039583 100628592 NR_039583 ENSMUSG00000093087 Mir3473d mmu-mir-3473d microRNA 3473d ncRNA 0.005000 0.427861 -7(GTCTGAATGAAAATAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-9 chr1 9797765 9797965 + -1.06596 NA promoter-TSS (NM_133220) promoter-TSS (NM_133220) -265 NM_177547 170755 Mm.336410 NM_133220 ENSMUSG00000025915 Sgk3 2510015P22Rik|A330005P07Rik|Cisk|fy|fz serum/glucocorticoid regulated kinase 3 protein-coding 0.080000 0.631841 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-511 chr7 135216118 135216318 + -1.06725 NA Intergenic Intergenic -20216 NR_046050 74314 Mm.415339 NR_046050 ENSMUSG00000100717 1700120G07Rik - RIKEN cDNA 1700120G07 gene ncRNA 0.005000 0.363184 -98(ATAAGCATACCAAAGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3243 chr7 135216034 135216234 + -1.06725 NA Intergenic Intergenic -20132 NR_046050 74314 Mm.415339 NR_046050 ENSMUSG00000100717 1700120G07Rik - RIKEN cDNA 1700120G07 gene ncRNA 0.005000 0.398010 -14(ATAAGCATACCAAAGC,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-500 chr7 84022613 84022813 + -1.06804 NA intron (NM_030728, intron 1 of 28) intron (NM_030728, intron 1 of 28) 63792 NM_030728 80982 Mm.160389 NM_030728 ENSMUSG00000052353 Cemip 12H19.01.T7|6330404C01Rik|9930013L23Rik|AY007814|Kiaa1199 cell migration inducing protein, hyaluronan binding protein-coding 0.010000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2577 chr4 52167054 52167254 + -1.06804 NA Intergenic MTC|LTR|ERVL-MaLR -116044 NR_040668 329844 Mm.128934 NR_040668 ENSMUSG00000085515 C630028M04Rik - RIKEN cDNA C630028M04 gene ncRNA 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2938 chr6 22015185 22015385 + -1.06884 NA intron (NM_001081351, intron 1 of 21) RMER1A|Other|Other 29375 NM_001081351 214642 Mm.221404 NM_001081351 ENSMUSG00000062980 Cped1 6720481P07|A430107O13Rik|AI552584 cadherin-like and PC-esterase domain containing 1 protein-coding 0.005000 0.467662 -20(ATCTCCATGACACAAG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-463 chr6 22015186 22015386 + -1.06884 NA intron (NM_001081351, intron 1 of 21) RMER1A|Other|Other 29376 NM_001081351 214642 Mm.221404 NM_001081351 ENSMUSG00000062980 Cped1 6720481P07|A430107O13Rik|AI552584 cadherin-like and PC-esterase domain containing 1 protein-coding 0.005000 0.472637 -21(ATCTCCATGACACAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3163 chr7 84582848 84583048 + -1.06926 NA Intergenic L1MA6|LINE|L1 22994 NM_010176 14085 Mm.3798 NM_010176 ENSMUSG00000030630 Fah swst fumarylacetoacetate hydrolase protein-coding 0.000000 0.383085 81(TATAAATATTCATT,+,0.00),81(TATAAATATTCATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3487 chr9 14625087 14625287 + -1.06927 NA Intergenic LTR104_Mam|LTR|Gypsy -10187 NM_001081395 75723 Mm.159552 NM_001081395 ENSMUSG00000013076 Amotl1 2310010G08Rik|2310067L22Rik|4932416D09Rik|JEAP|mFLJ00155 angiomotin-like 1 protein-coding 0.010000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2189 chr2 166218855 166219055 + -1.06927 NA Intergenic Intergenic -54953 NR_033467 670775 Mm.384326 NR_033467 ENSMUSG00000084840 Gm11468 - predicted gene 11468 ncRNA 0.035000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2649 chr4 97405974 97406174 + -1.06927 NA Intergenic Intergenic -175869 NM_001122952 18027 Mm.31274 NM_010905 ENSMUSG00000028565 Nfia 1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A nuclear factor I/A protein-coding 0.000000 0.363184 75(CTATTCTCATGTATTT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-149 chr1 82494699 82494899 + -1.06927 NA intron (NM_007735, intron 26 of 47) intron (NM_007735, intron 26 of 47) 92050 NM_007735 12829 Mm.40253 NM_007735 ENSMUSG00000067158 Col4a4 E130010M05Rik|[a]4(IV) collagen, type IV, alpha 4 protein-coding 0.020000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1900 chr19 45317551 45317751 + -1.06927 NA Intergenic Intergenic -46083 NM_001037758 12234 Mm.119717 NM_009771 ENSMUSG00000025217 Btrc Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP beta-transducin repeat containing protein protein-coding 0.035000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1371 chr15 86015971 86016171 + -1.06927 NA intron (NM_009886, intron 1 of 34) intron (NM_009886, intron 1 of 34) 17706 NM_009886 12614 Mm.22680 NM_009886 ENSMUSG00000016028 Celsr1 Adgrc1|Crsh|Scy|crash cadherin, EGF LAG seven-pass G-type receptor 1 protein-coding 0.030000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-883 chr13 6213264 6213464 + -1.06927 NA Intergenic Intergenic -334793 NM_001360106 69617 Mm.41933 NM_145131 ENSMUSG00000021193 Pitrm1 2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104 pitrilysin metallepetidase 1 protein-coding 0.000000 0.368159 57(ATAAACATGACAGTAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2614 chr4 76601382 76601582 + -1.06927 NA intron (NR_160919, intron 9 of 39) ORR1B1|LTR|ERVL-MaLR -257239 NM_001352628 19266 Mm.184021 NM_011211 ENSMUSG00000028399 Ptprd 1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta protein tyrosine phosphatase, receptor type, D protein-coding 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2663 chr4 103706677 103706877 + -1.06927 NA intron (NM_001369049, intron 1 of 19) intron (NM_001369049, intron 1 of 19) 87277 NM_001369046 13131 Mm.289682 NM_010014 ENSMUSG00000028519 Dab1 AI956902|C630028C02Rik|scm|scr|scrambler|yot disabled 1 protein-coding 0.005000 0.462687 -7(ATTTGCAAGAGAGGGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1283 chr15 28629484 28629684 + -1.06927 NA Intergenic Lx8|LINE|L1 425818 NM_133365 110082 Mm.248464 NM_133365 ENSMUSG00000022262 Dnah5 AU022615|Dnahc5|Mdnah5|b2b1134Clo|b2b1154Clo|b2b1537Clo|b2b1565Clo|b2b3491Clo|b2b601Clo|mKIAA1603 dynein, axonemal, heavy chain 5 protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-821 chr12 70778771 70778971 + -1.06927 NA Intergenic Intergenic -46643 NM_028127 319710 Mm.2962 NM_028127 ENSMUSG00000048285 Frmd6 2610019M19Rik|4930488L10Rik|AW212977|Willin FERM domain containing 6 protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1613 chr17 54014347 54014547 + -1.06927 NA Intergenic Intergenic -23816 NM_018751 20888 Mm.10108 NM_018751 ENSMUSG00000023943 Sult1c1 (PST)G|P-SULT|ST1C1|Stp2|Sult1a2|mOLFST sulfotransferase family, cytosolic, 1C, member 1 protein-coding 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2553 chr4 36350901 36351101 + -1.06927 NA intron (NM_001165999, intron 3 of 7) intron (NM_001165999, intron 3 of 7) 294452 NR_030545 100124458 NR_030545 ENSMUSG00000077851 Mir876 Mirn876|mir-876|mmu-mir-876 microRNA 876 ncRNA 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-333 chr10 7118868 7119068 + -1.06927 NA TTS (NM_172546) TTS (NM_172546) 93269 NM_172546 215748 Mm.37984 NM_172546 ENSMUSG00000015202 Cnksr3 6820402C05|BC024086|Magi1 Cnksr family member 3 protein-coding 0.020000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1971 chr2 27770186 27770386 + -1.06927 NA Intergenic Intergenic 59703 NM_001290482 20181 Mm.24624 NM_011305 ENSMUSG00000015846 Rxra 9530071D11Rik|Nr2b1|RXRalpha1 retinoid X receptor alpha protein-coding 0.020000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-589 chr11 31665073 31665273 + -1.06927 NA TTS (NM_001024919) TTS (NM_001024919) 6689 NM_001024919 69556 Mm.34183 NM_001024919 ENSMUSG00000044502 Bod1 2310022M17Rik|BOD2.1|Fam44b biorientation of chromosomes in cell division 1 protein-coding 0.015000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-746 chr12 24798293 24798493 + -1.06927 NA Intergenic Intergenic -33206 NM_001083341 67216 Mm.167671 NM_026037 ENSMUSG00000020646 Mboat2 2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2 membrane bound O-acyltransferase domain containing 2 protein-coding 0.000000 0.388060 -46(ACTCTTTCATGCTAAT,+,0.00),4(TCATTTTTATTCAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2589 chr4 62274926 62275126 + -1.06927 NA Intergenic ID_B1|SINE|B4 -11403 NM_025286 20530 Mm.292539 NM_025286 ENSMUSG00000066152 Slc31a2 AI604396|CTR2 solute carrier family 31, member 2 protein-coding 0.005000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-387 chr10 33220878 33221078 + -1.06927 NA intron (NM_029726, intron 9 of 37) L1_Mus2|LINE|L1 35379 NR_040657 442820 Mm.490725 NR_040657 ENSMUSG00000112707 D830005E20Rik - RIKEN cDNA D830005E20 gene ncRNA 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-230 chr1 133347066 133347266 + -1.06927 NA Intergenic Intergenic -3400 NM_031193 19702 Mm.220955 NM_031193 Ren2 Ren|Ren-2|Ren-B|Rn-2|Rnr renin 2 tandem duplication of Ren1 protein-coding 0.010000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1184 chr14 95576570 95576770 + -1.06927 NA Intergenic B3|SINE|B2 -304584 NM_001358241 66732 Mm.75060 NM_025733 ENSMUSG00000034689 Spertl 4921530L21Rik spermatid associated like protein-coding 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-272 chr1 160806338 160806538 + -1.06927 NA Intergenic Intergenic -13500 NM_013862 29809 Mm.25833 NM_013862 ENSMUSG00000026721 Rabgap1l 5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471 RAB GTPase activating protein 1-like protein-coding 0.005000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2179 chr2 159819659 159819859 + -1.06927 NA Intergenic Intergenic -127582 NR_040498 71081 Mm.383491 NR_040498 ENSMUSG00000085198 4933416E03Rik - RIKEN cDNA 4933416E03 gene ncRNA 0.005000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1951 chr2 15552651 15552851 + -1.06927 NA intron (NM_001310455, intron 2 of 38) intron (NM_001310455, intron 2 of 38) 26272 NM_001310455 102635496 NM_001310455 ENSMUSG00000075520 Malrd1 Diet1|Gm13318|Gm13364 MAM and LDL receptor class A domain containing 1 protein-coding 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-870 chr12 109856470 109856670 + -1.06927 NA Intergenic RMER1A|Other|Other 108692 NR_037233 100499517 NR_037233 ENSMUSG00000093351 Mir3072 mir-3072|mmu-mir-3072 microRNA 3072 ncRNA 0.005000 0.507463 -11(ATCTCCATGACACAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1274 chr15 24649598 24649798 + -1.06927 NA Intergenic RMER6C|LTR|ERVK 764066 NM_027395 70350 Mm.29586 NM_027395 ENSMUSG00000045763 Basp1 2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22 brain abundant, membrane attached signal protein 1 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3756 chrX 145171927 145172127 + -1.06927 NA Intergenic L1M2|LINE|L1 132683 NR_037309 100499526 NR_037309 ENSMUSG00000092917 Mir3472 mmu-mir-3472 microRNA 3472 ncRNA 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-543 chr11 5528051 5528251 + -1.06927 NA TTS (NM_134033) TTS (NM_134033) 7510 NM_013842 22433 Mm.469937 NM_013842 ENSMUSG00000020484 Xbp1 D11Ertd39e|TREB-5|TREB5|XBP-1 X-box binding protein 1 protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2390 chr3 114580215 114580415 + -1.06927 NA Intergenic Intergenic -323763 NM_153458 229759 Mm.54183 NM_153157 ENSMUSG00000027965 Olfm3 B230206G02Rik olfactomedin 3 protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1631 chr17 68373100 68373300 + -1.06927 NA intron (NM_177278, intron 3 of 20) RLTR22_Mur|LTR|ERVK 99403 NM_177278 320858 Mm.137356 NM_177278 ENSMUSG00000041565 L3mbtl4 A730037L19Rik|D930040M24Rik L3MBTL4 histone methyl-lysine binding protein protein-coding 0.005000 0.363184 -6(CTTACATATGCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1013 chr13 95335717 95335917 + -1.06927 NA intron (NM_001302539, intron 1 of 1) intron (NM_001302539, intron 1 of 1) 5206 NR_034043 100217450 Mm.442313 NR_034043 ENSMUSG00000088108 Snora47 MBI-115 small nucleolar RNA, H/ACA box 47 snoRNA 0.020000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-530 chr10 121822657 121822857 + -1.06927 NA intron (NM_001081037, intron 15 of 21) intron (NM_001081037, intron 15 of 21) 82827 NM_001359720 270802 Mm.209172 NM_173022 ENSMUSG00000053684 BC048403 E030027L10 cDNA sequence BC048403 protein-coding 0.005000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3358 chr8 61265441 61265641 + -1.06927 NA intron (NM_021506, intron 2 of 11) intron (NM_021506, intron 2 of 11) 23331 NR_045475 69279 Mm.417857 NR_045475 ENSMUSG00000099419 1700001D01Rik - RIKEN cDNA 1700001D01 gene ncRNA 0.010000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2009 chr2 52943446 52943646 + -1.06927 NA intron (NM_172409, intron 1 of 26) intron (NM_172409, intron 1 of 26) 85678 NM_172409 71409 Mm.394427 NM_172409 ENSMUSG00000036053 Fmnl2 5430425K04Rik|Man formin-like 2 protein-coding 0.005000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-185 chr1 107971054 107971254 + -1.06927 NA Intergenic Intergenic 53895 NR_102307 319596 Mm.136054 NR_102306 ENSMUSG00000100457 D830032E09Rik - RIKEN cDNA D830032E09 gene ncRNA 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1419 chr16 14658641 14658841 + -1.06927 NA Intergenic Lx3_Mus|LINE|L1 -47111 NM_011415 20583 Mm.4272 NM_011415 ENSMUSG00000022676 Snai2 Slug|Slugh|Snail2 snail family zinc finger 2 protein-coding 0.010000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3131 chr7 68560389 68560589 + -1.06927 NA Intergenic Intergenic -57967 NR_003648 384639 Mm.261760 NM_001013781 Gm5334 EG384639 tetraspanin 7 pseudogene pseudo 0.025000 0.472637 -18(ATATGAAACAAAATAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1554 chr16 91767530 91767730 + -1.06927 NA intron (NM_001110275, intron 1 of 28) intron (NM_001110275, intron 1 of 28) 38259 NM_001110276 16443 Mm.40546 NM_010587 ENSMUSG00000022957 Itsn1 AA517634|AA545208|AI316805|AI839402|AI848451|Ehsh1|Ese1|Itsn|Sh3p17 intersectin 1 (SH3 domain protein 1A) protein-coding 0.020000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-806 chr12 60175560 60175760 + -1.06927 NA Intergenic Intergenic -956177 NM_001033156 70611 Mm.311026 NM_001033156 ENSMUSG00000035329 Fbxo33 5730501N20Rik|AI642135 F-box protein 33 protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-347 chr10 17060303 17060503 + -1.06965 NA intron (NR_038020, intron 1 of 8) Lx4B|LINE|L1 35379 NR_038020 100504235 Mm.84044 NR_038020 ENSMUSG00000101969 Gm20125 - predicted gene, 20125 ncRNA 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-774 chr12 41445418 41445618 + -1.07045 NA intron (NM_053122, intron 4 of 6) intron (NM_053122, intron 4 of 6) 40539 NM_001271709 16981 Mm.404786 NM_010733 ENSMUSG00000036295 Lrrn3 NLRR-3 leucine rich repeat protein 3, neuronal protein-coding 0.000000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1885 chr19 37111942 37112142 + -1.07362 NA intron (NM_198300, intron 4 of 10) L1M2|LINE|L1 -61801 NR_045329 319931 Mm.446730 NR_045329 ENSMUSG00000097591 A330032B11Rik - RIKEN cDNA A330032B11 gene ncRNA 0.010000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-925 chr13 28410435 28410635 + -1.07362 NA Intergenic Intergenic 268051 NM_023746 28078 Mm.155058 NM_023746 ENSMUSG00000017064 Prl5a1 1600013P04Rik|D13Wsu14e|Ghd24|PLP-L|Prlpl prolactin family 5, subfamily a, member 1 protein-coding 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2219 chr3 15231582 15231782 + -1.07362 NA Intergenic Intergenic 100620 NM_001076679 751864 Mm.431296 NM_001076679 ENSMUSG00000078783 Gm9733 - predicted gene 9733 protein-coding 0.005000 0.343284 75(ACATTGTGATTATAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3298 chr8 24734816 24735016 + -1.07362 NA intron (NM_001272057, intron 18 of 18) intron (NM_001272057, intron 18 of 18) -9064 NM_001324489 11497 Mm.5168 NM_009619 ENSMUSG00000031553 Adam3 Cyrn1|Taz83|tMDC a disintegrin and metallopeptidase domain 3 (cyritestin) protein-coding 0.005000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2135 chr2 136118980 136119180 + -1.07362 NA intron (NM_001360384, intron 4 of 10) L1MC3|LINE|L1 61332 NM_029530 76161 Mm.41638 NM_029530 ENSMUSG00000027270 Lamp5 3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5 lysosomal-associated membrane protein family, member 5 protein-coding 0.010000 0.462687 16(TTTGCATAAAGCATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3492 chr9 20721833 20722033 + -1.07362 NA intron (NM_001357639, intron 1 of 5) intron (NM_001357639, intron 1 of 5) 5070 NM_001357635 244723 Mm.293552 NM_173777 ENSMUSG00000032172 Olfm2 A030009A06Rik olfactomedin 2 protein-coding 0.010000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1987 chr2 43177830 43178030 + -1.07362 NA Intergenic Lx6|LINE|L1 -377395 NM_001289593 70789 Mm.105278 NM_027552 ENSMUSG00000026866 Kynu 4432411A05Rik kynureninase protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-408 chr10 46483168 46483368 + -1.07362 NA Intergenic Intergenic 238520 NR_028274 100302593 NR_028274 ENSMUSG00000095118 Snord14d Gm23710 small nucleolar RNA, C/D box 14D snoRNA 0.005000 0.402985 -22(ATTAGCATGATAAAAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3282 chr8 15984252 15984452 + -1.07362 NA intron (NM_053171, intron 49 of 69) MTEa|LTR|ERVL-MaLR 184486 NR_037214 100526464 NR_037214 ENSMUSG00000093142 Mir3106 mir-3106|mmu-mir-3106 microRNA 3106 ncRNA 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2475 chr3 144966623 144966823 + -1.07362 NA intron (NM_207208, intron 5 of 13) Lx10|LINE|L1 8322 NM_207208 99663 Mm.442050 NM_207208 ENSMUSG00000068547 Clca4a 9130020L07Rik|AI504701|Clca4|Clca6 chloride channel accessory 4A protein-coding 0.005000 0.427861 30(ATGTGTATCACAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3681 chrX 19320196 19320396 + -1.07362 NA Intergenic Intergenic 161023 NM_207524 278255 Mm.303203 NM_207524 ENSMUSG00000068149 Tex13c3 Gm720 TEX13 family member C3 protein-coding 0.000000 0.398010 -24(CTTTGCATAGGAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3743 chrX 136414633 136414833 + -1.07362 NA Intergenic Intergenic 54308 NM_177748 245615 Mm.246624 NM_177748 ENSMUSG00000057439 Kir3dl2 Kirl2 killer cell immunoglobulin-like receptor, three domains, long cytoplasmic tail, 2 protein-coding 0.010000 0.412935 -77(ATGAGCATGACAACAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3004 chr6 78050826 78051026 + -1.07362 NA Intergenic Intergenic -71259 NM_145732 12386 Mm.34637 NM_009819 ENSMUSG00000063063 Ctnna2 AI481747|Catna|Catna2|cdf|chp catenin (cadherin associated protein), alpha 2 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1665 chr17 90743734 90743934 + -1.07362 NA intron (NM_001346957, intron 3 of 18) intron (NM_001346957, intron 3 of 18) 49642 NR_136930 102634634 NR_136930 Gm20491 - enolase 1, alpha non-neuron pseudogene pseudo 0.015000 0.412935 -30(GTGTGCATGAAAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3030 chr6 96660193 96660393 + -1.07362 NA Intergenic Intergenic 400118 NM_177233 320701 Mm.131700 NM_177233 ENSMUSG00000046500 Tafa4 C130034I18Rik|Fam19a4|Fam19a4 Tafa-4|Tafa-4 TAFA chemokine like family member 4 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1234 chr14 124269722 124269922 + -1.07362 NA intron (NM_207667, intron 1 of 4) intron (NM_207667, intron 1 of 4) -77276 NM_010201 14169 Mm.206362 NM_010201 ENSMUSG00000025551 Fgf14 FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B) fibroblast growth factor 14 protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2833 chr5 89370154 89370354 + -1.07362 NA Intergenic Tigger5|DNA|TcMar-Tigger 87644 NM_008096 14473 Mm.196595 NM_008096 ENSMUSG00000035540 Gc DBP|VDB vitamin D binding protein protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2041 chr2 73850720 73850920 + -1.07362 NA intron (NM_001025093, intron 7 of 14) intron (NM_001025093, intron 7 of 14) 41819 NM_001284373 11909 Mm.209903 NM_009715 ENSMUSG00000027104 Atf2 Atf-2|CRE-BP|Creb2|D130078H02Rik|D18875|Tg(Gzma-Klra1)7Wum|mXBP activating transcription factor 2 protein-coding 0.005000 0.263682 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3150 chr7 77255985 77256185 + -1.07362 NA Intergenic Intergenic 1026198 NM_001199224 244071 Mm.322829 NM_172902 ENSMUSG00000025754 Agbl1 Ccp4|D430020F16|EG244071|Nna1-l1 ATP/GTP binding protein-like 1 protein-coding 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2673 chr4 114354165 114354365 + -1.07362 NA Intergenic Intergenic -52459 NM_001085549 666048 Mm.331779 NM_001085549 ENSMUSG00000070867 Trabd2b Gm12824|Hkat TraB domain containing 2B protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1081 chr14 22052426 22052626 + -1.07362 NA intron (NM_028275, intron 2 of 6) intron (NM_028275, intron 2 of 6) 32814 NM_028275 76633 Mm.489898 NM_028275 ENSMUSG00000063458 Lrmda 1700112E06Rik|2700009F18Rik leucine rich melanocyte differentiation associated protein-coding 0.015000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1703 chr18 23297373 23297573 + -1.07362 NA Intergenic Intergenic -12547 NM_001285813 13527 Mm.94371 NM_010087 ENSMUSG00000024302 Dtna 2210407P21Rik|DTN-A|Dtn|Gm19389|a-DB-1|adbn dystrobrevin alpha protein-coding 0.000000 0.323383 -69(TCATAGCTATGCAAAT,+,0.00),53(ATAAACATGAGAAATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-236 chr1 138023039 138023239 + -1.07362 NA Intergenic Intergenic 56500 NR_029820 723890 NR_029820 ENSMUSG00000065458 Mir181b-1 Mirn181b-1|mir-181b-1 microRNA 181b-1 ncRNA 0.015000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3419 chr8 101037540 101037740 + -1.07362 NA Intergenic Intergenic 1620966 NR_132435 234624 Mm.124595 NM_175479 ENSMUSG00000052479 A330008L17Rik - RIKEN cDNA A330008L17 gene ncRNA 0.000000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-512 chr10 108705935 108706135 + -1.07362 NA intron (NM_001252342, intron 3 of 10) Lx7|LINE|L1 -5875 NM_203660 368203 Mm.452758 NM_203660 ENSMUSG00000112039 Gm5136 C6.1AL|EG368203 predicted gene 5136 protein-coding 0.005000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-368 chr10 24432778 24432978 + -1.07362 NA intron (NR_163910, intron 3 of 4) intron (NR_163910, intron 3 of 4) -162564 NM_010217 14219 Mm.390287 NM_010217 ENSMUSG00000019997 Ccn2 Ctgf|Fisp12|Hcs24|fisp-12 cellular communication network factor 2 protein-coding 0.005000 0.393035 17(TTCTTATGATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3685 chrX 22782060 22782260 + -1.07362 NA Intergenic L1M3|LINE|L1 320564 NR_033731 76705 Mm.399727 NM_029707 Ppp1r2-ps7 1700023I07Rik protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 7 pseudo 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1767 chr18 52641960 52642160 + -1.07362 NA Intergenic Intergenic -4160 NM_030097 78414 Mm.273327 NM_030097 ENSMUSG00000024532 1700034E13Rik - RIKEN cDNA 1700034E13 gene protein-coding 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1765 chr18 52109918 52110118 + -1.07362 NA Intergenic Intergenic 13528 NR_029788 723830 NR_029788 ENSMUSG00000065494 Mir28a Mir28|Mirn28|mmu-mir-28|mmu-mir-28a microRNA 28a ncRNA 0.010000 0.373134 -37(ATCTAAAAGAAAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3012 chr6 82024461 82024661 + -1.07362 NA Intergenic Intergenic -17067 NM_145570 232146 Mm.489683 NM_145570 ENSMUSG00000035104 Eva1a BC014699|Fam176a|Tmem166 eva-1 homolog A (C. elegans) protein-coding 0.005000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-255 chr1 149720548 149720748 + -1.07362 NA Intergenic Intergenic 201791 NM_001305632 18783 Mm.4186 NM_008869 ENSMUSG00000056220 Pla2g4a Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 0.005000 0.402985 58(TATGCATTGTGCATT,+,0.00),58(TATGCATTGTGCATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-32 chr1 24220534 24220734 + -1.07362 NA intron (NM_001290691, intron 14 of 31) intron (NM_001290691, intron 14 of 31) 25431 NM_001290691 12839 Mm.154662 NM_007740 ENSMUSG00000026147 Col9a1 Col9a-1 collagen, type IX, alpha 1 protein-coding 0.005000 0.378109 34(ATATGCATCAGAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1225 chr14 120372234 120372434 + -1.07362 NA intron (NM_001360380, intron 2 of 7) intron (NM_001360380, intron 2 of 7) 65882 NM_001360376 105559 Mm.238266 NM_175341 ENSMUSG00000022139 Mbnl2 1110002M11Rik|AI047808|AI837313|AI849185|AL118326|MBLL|R75232|mKIAA4072 muscleblind like splicing factor 2 protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2922 chr6 9842547 9842747 + -1.07362 NA Intergenic Intergenic 892628 NM_008751 18231 Mm.46954 NM_008751 ENSMUSG00000046178 Nxph1 C130005L03Rik neurexophilin 1 protein-coding 0.010000 0.378109 -51(GCTTTATTATGCTCAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2976 chr6 51316919 51317119 + -1.07362 NA Intergenic L1M4|LINE|L1 -47109 NR_029719 387166 NR_029719 ENSMUSG00000065505 Mir148a Mirn148|Mirn148a|mir-148a microRNA 148a ncRNA 0.005000 0.318408 66(CCTTTATCTGGCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-659 chr11 75782110 75782310 + -1.07362 NA intron (NM_007873, intron 2 of 8) intron (NM_007873, intron 2 of 8) -13599 NR_136933 102641247 Mm.411386 NR_136932 Gm12339 - predicted gene 12339 ncRNA 0.010000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1179 chr14 92990956 92991156 + -1.07362 NA Intergenic Intergenic 899613 NM_001271799 211712 Mm.37126 NM_001081377 ENSMUSG00000055421 Pcdh9 - protocadherin 9 protein-coding 0.000000 0.298507 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3026 chr6 94524503 94524703 + -1.07362 NA intron (NM_026255, intron 3 of 9) intron (NM_026255, intron 3 of 9) 24289 NM_026255 67582 Mm.280725 NM_026255 ENSMUSG00000045100 Slc25a26 4930433D19Rik|4933433F13Rik|AW557176|D6Bwg0781e|Slc25a6 solute carrier family 25 (mitochondrial carrier, phosphate carrier), member 26 protein-coding 0.005000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2669 chr4 111748608 111748808 + -1.07362 NA intron (NM_026470, intron 3 of 12) intron (NM_026470, intron 3 of 12) 28698 NM_026470 67946 Mm.275526 NM_026470 ENSMUSG00000034401 Spata6 1700062C23Rik|AI790763|Hash|KRP|Mash spermatogenesis associated 6 protein-coding 0.000000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1878 chr19 34172143 34172343 + -1.07362 NA Intergenic Intergenic -6202 NM_024204 52024 Mm.183030 NM_024204 ENSMUSG00000024774 Ankrd22 5430429D21Rik|D19Ertd675e ankyrin repeat domain 22 protein-coding 0.000000 0.398010 -6(CCTTTCAAATGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-43 chr1 32277542 32277742 + -1.07362 NA intron (NM_133235, intron 2 of 8) intron (NM_133235, intron 2 of 8) 104920 NM_133235 170771 Mm.336594 NM_133235 ENSMUSG00000026058 Khdrbs2 6330586C16Rik|Slim1|Slm-1|Slm1|TG-RP135|Tg(LRRK2*R1441G)135Cjli|mSLM-1 KH domain containing, RNA binding, signal transduction associated 2 protein-coding 0.000000 0.363184 51(ATTTATAAAACAATAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1091 chr14 29003767 29003967 + -1.07362 NA intron (NM_009785, intron 27 of 37) intron (NM_009785, intron 27 of 37) -14341 NM_176920 319476 Mm.95780 NM_176920 ENSMUSG00000045776 Lrtm1 A930016D02Rik leucine-rich repeats and transmembrane domains 1 protein-coding 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1190 chr14 98538762 98538962 + -1.07362 NA Intergenic Intergenic -369097 NM_001038610 13134 Mm.320593 NM_007826 ENSMUSG00000055639 Dach1 Dac|Dach dachshund family transcription factor 1 protein-coding 0.005000 0.388060 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-285 chr18 75735757 75735957 + -1.07447 NA Intergenic B4|SINE|B4 -38161 NM_201354 269037 Mm.36745 NM_201354 ENSMUSG00000052928 Ctif Gm672 CBP80/20-dependent translation initiation factor protein-coding 0.015000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3531 chr9 46978949 46979149 + -1.07527 NA Intergenic Intergenic -19692 NM_001243258 215467 Mm.246572 NM_001243258 ENSMUSG00000094893 Gm4791 D930036J05 predicted gene 4791 protein-coding 0.035000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1193 chr14 99040757 99040957 + -1.07607 NA intron (NM_175245, intron 1 of 2) Lx9|LINE|L1 5279 NM_175245 76789 Mm.38912 NM_175245 ENSMUSG00000033186 Mzt1 2410129H14Rik|AI120158|Mozart1 mitotic spindle organizing protein 1 protein-coding 0.015000 0.353234 -43(TGTACATATGCATG,-,0.00) -95(GCATACTTATGTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2961 chr6 39434097 39434297 + -1.07764 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 13819 NR_152168 621427 Mm.389742 NR_152168 ENSMUSG00000068601 Gm10244 Anmkrn1 predicted gene 10244 ncRNA 0.000000 0.467662 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-468 chr6 39434091 39434291 + -1.07764 NA Intergenic (CA)n|Simple_repeat|Simple_repeat 13813 NR_152168 621427 Mm.389742 NR_152168 ENSMUSG00000068601 Gm10244 Anmkrn1 predicted gene 10244 ncRNA 0.000000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2948 chr6 29513410 29513610 + -1.07938 NA Intergenic Intergenic -5558 NM_001029985 333088 Mm.332961 NM_001029985 ENSMUSG00000059022 Kcp AW060220|CRIM-2|Crim2|Gm793|KCP-1 kielin/chordin-like protein protein-coding 0.040000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1784 chr18 62003354 62003554 + -1.07938 NA intron (NM_172628, intron 12 of 16) intron (NM_172628, intron 12 of 16) 50379 NM_172628 225608 Mm.262320 NM_172628 ENSMUSG00000045629 Sh3tc2 D430044G18Rik SH3 domain and tetratricopeptide repeats 2 protein-coding 0.025000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-206 chr1 118916611 118916811 + -1.07938 NA intron (NM_001081125, intron 2 of 13) intron (NM_001081125, intron 2 of 13) -37509 NR_105764 102465176 NR_105764 ENSMUSG00000098273 Mir6346 Gm27829|mmu-mir-6346 microRNA 6346 ncRNA 0.020000 0.572139 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3136 chr7 71867096 71867296 + -1.07938 NA Intergenic Intergenic -42499 NR_130995 78156 Mm.243818 NR_130995 ENSMUSG00000108669 4930441H08Rik - RIKEN cDNA 4930441H08 gene ncRNA 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1565 chr17 3533484 3533684 + -1.07938 NA TTS (NM_001101560) TTS (NM_001101560) 1030 NM_001101560 621628 Mm.469914 NM_001101560 ENSMUSG00000091530 Cldn20 EG621628 claudin 20 protein-coding 0.005000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1200 chr14 108012998 108013198 + -1.07938 NA Intergenic Intergenic 901141 NM_199065 76965 Mm.257268 NM_199065 ENSMUSG00000075478 Slitrk1 3200001I04Rik SLIT and NTRK-like family, member 1 protein-coding 0.005000 0.268657 -3(TATACATTAGTCATA,-,0.00) -26(CCTGCATATACATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-718 chr11 121156826 121157026 + -1.07938 NA Intergenic CpG -3345 NM_145440 217369 Mm.20122 NM_145440 ENSMUSG00000039321 Uts2r Gpr14|UR-2-R|UTR|UTR2 urotensin 2 receptor protein-coding 0.095000 0.671642 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-221 chr1 127437171 127437371 + -1.07938 NA intron (NM_145128, intron 12 of 17) intron (NM_145128, intron 12 of 17) 232285 NM_145128 107895 Mm.214682 NM_145128 ENSMUSG00000036155 Mgat5 4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV mannoside acetylglucosaminyltransferase 5 protein-coding 0.025000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3233 chr7 129830326 129830526 + -1.07938 NA Intergenic B4A|SINE|B4 -131739 NR_046077 100043150 Mm.334264 NR_046077 ENSMUSG00000108504 Gm4265 - predicted gene 4265 ncRNA 0.005000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1675 chr18 6784022 6784222 + -1.07938 NA intron (NM_181070, intron 4 of 6) MTC|LTR|ERVL-MaLR 18955 NM_001278447 19330 Mm.132802 NM_181070 ENSMUSG00000073639 Rab18 AA959686 RAB18, member RAS oncogene family protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1372 chr15 88766457 88766657 + -1.07938 NA intron (NM_181412, intron 2 of 2) B1_Mm|SINE|Alu 14846 NM_181412 223773 Mm.396622 NM_181412 ENSMUSG00000034333 Zbed4 1700009F06Rik zinc finger, BED type containing 4 protein-coding 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2861 chr5 106274468 106274668 + -1.07938 NA Intergenic MLT1B|LTR|ERVL-MaLR -46772 NR_136913 102635633 Mm.383511 NR_136913 ENSMUSG00000105508 Gm32921 - predicted gene, 32921 ncRNA 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1362 chr15 81710096 81710296 + -1.07938 NA intron (NM_001146174, intron 11 of 15) intron (NM_001146174, intron 11 of 15) -12909 NM_001164320 214685 Mm.393287 NM_001164320 ENSMUSG00000063765 Chadl AY100452|D930017K21Rik chondroadherin-like protein-coding 0.015000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2235 chr3 29035009 29035209 + -1.07938 NA Intergenic Intergenic -46678 NR_151636 75740 Mm.330948 NM_029412 ENSMUSG00000063600 Egfem1 6130401L20Rik|Efcab11 EGF-like and EMI domain containing 1 protein-coding 0.005000 0.407960 -64(ATTTAAATAACAGAGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1658 chr17 83924107 83924307 + -1.07938 NA Intergenic MTE2a|LTR|ERVL-MaLR -69789 NR_155490 320021 Mm.379475 NR_155490 C430042M11Rik - RIKEN cDNA C430042M11 gene ncRNA 0.005000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-513 chr10 108987049 108987249 + -1.07938 NA intron (NM_001252342, intron 1 of 10) intron (NM_001252342, intron 1 of 10) 21962 NM_001358502 20979 Mm.289702 NM_009306 ENSMUSG00000035864 Syt1 AW124717|G630098F17Rik|SytI synaptotagmin I protein-coding 0.005000 0.417910 69(GCTGAATAAAGCATG,+,0.00) -28(GATGCATATTCAGT,+,0.00),-28(GATGCATATTCAGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2040 chr2 73469723 73469923 + -1.07938 NA intron (NM_153138, intron 1 of 7) intron (NM_153138, intron 1 of 7) 15930 NM_001289723 215280 Mm.223504 NM_153138 ENSMUSG00000075284 Wipf1 AI115543|D2Ertd120e|WIP|Waspip WAS/WASL interacting protein family, member 1 protein-coding 0.020000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1005 chr13 91233829 91234029 + -1.07938 NA Intergenic MYSERV6-int|LTR|ERVK -9942 NM_025770 66795 Mm.235385 NM_025770 ENSMUSG00000021619 Atg10 5330424L23Rik|5430428K15Rik|AI852123|APG10|Agp10|Apg10l|Apg10p|Atg10l autophagy related 10 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2050 chr2 86295529 86295729 + -1.07938 NA Intergenic Lx10|LINE|L1 -2189 NM_147010 259012 Mm.377788 NM_147010 ENSMUSG00000047149 Olfr1052 MOR172-1 olfactory receptor 1052 protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-909 chr13 17969924 17970124 + -1.07938 NA Intergenic L1_Rod|LINE|L1 23327 NM_025904 67008 Mm.252918 NM_025904 ENSMUSG00000075054 Yae1d1 1600012F09Rik Yae1 domain containing 1 protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3607 chr9 91695281 91695481 + -1.07938 NA Intergenic B3A|SINE|B2 326409 NM_009576 22774 Mm.8062 NM_009576 ENSMUSG00000036972 Zic4 - zinc finger protein of the cerebellum 4 protein-coding 0.015000 0.412935 -41(TTTCTCTTATGTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3054 chr6 112410329 112410529 + -1.07938 NA Intergenic (TTTG)n|Simple_repeat|Simple_repeat -22406 NM_175525 243612 Mm.122653 NM_175525 ENSMUSG00000034387 Ssu2 D630042P16Rik|Fls485|Ssuh2 ssu-2 homolog (C. elegans) protein-coding 0.000000 0.402985 40(GTATTTTTATGCAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1588 chr17 28575564 28575764 + -1.07938 NA promoter-TSS (NM_026571) promoter-TSS (NM_026571) -55 NM_026571 328789 Mm.284760 NM_026571 ENSMUSG00000062252 Lhfpl5 9330179O15Rik|Tmhs|hscy lipoma HMGIC fusion partner-like 5 protein-coding 0.110000 0.746269 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2389 chr3 114361607 114361807 + -1.07938 NA Intergenic RLTR24B_MM|LTR|ERV1 331167 NM_007729 12814 Mm.209715 NM_007729 ENSMUSG00000027966 Col11a1 C530001D20Rik|cho collagen, type XI, alpha 1 protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-503 chr10 104403783 104403983 + -1.07938 NA Intergenic Lx6|LINE|L1 116614 NR_105838 102465222 NR_105838 ENSMUSG00000099264 Mir6411 Gm27767|mmu-mir-6411 microRNA 6411 ncRNA 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1147 chr14 72506529 72506729 + -1.07938 NA Intergenic Intergenic 203374 NM_207636 319448 Mm.205421 NM_207636 ENSMUSG00000033487 Fndc3a 1700094E19Rik|D14Ertd453e|F730017H24Rik|Fndc3|sys fibronectin type III domain containing 3A protein-coding 0.030000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-24 chr1 19947279 19947479 + -1.07938 NA Intergenic Intergenic -409075 NR_045734 75028 Mm.417820 NR_045734 ENSMUSG00000089914 4930486I03Rik - RIKEN cDNA 4930486I03 gene ncRNA 0.000000 0.353234 -52(CATACATATGCACA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-6 chr1 7381023 7381223 + -1.07938 NA Intergenic Intergenic 292203 NM_183028 319263 Mm.21539 NM_183028 ENSMUSG00000051285 Pcmtd1 8430411F12Rik|A030012M09Rik protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1 protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-643 chr11 64419420 64419620 + -1.07938 NA Intergenic AT_rich|Low_complexity|Low_complexity -15812 NM_178870 15478 Mm.340214 NM_178870 ENSMUSG00000047759 Hs3st3a1 3Ost3a|Hs3st3a heparan sulfate (glucosamine) 3-O-sulfotransferase 3A1 protein-coding 0.000000 0.268657 -44(ATATGAACAACAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1825 chr19 4315266 4315466 + -1.07938 NA TTS (NM_001001984) TTS (NM_001001984) -9144 NM_130863 110355 Mm.254144 NM_130863 ENSMUSG00000024858 Grk2 Adrbk-1|Adrbk1|Bark-1|beta ARK|betaARK1 G protein-coupled receptor kinase 2 protein-coding 0.015000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1715 chr18 31187724 31187924 + -1.07938 NA intron (NM_009065, intron 3 of 4) intron (NM_009065, intron 3 of 4) 129304 NM_009065 19762 Mm.5163 NM_009065 ENSMUSG00000057455 Rit2 RIBA|Rin|Roc2 Ras-like without CAAX 2 protein-coding 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3389 chr8 81575740 81575940 + -1.07938 NA intron (NM_001297593, intron 2 of 23) URR1B|DNA|hAT-Charlie 233278 NM_001297596 234515 Mm.324468 NM_001024617 ENSMUSG00000037940 Inpp4b E130107I17Rik inositol polyphosphate-4-phosphatase, type II protein-coding 0.010000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3629 chr9 102492393 102492593 + -1.07938 NA Intergenic Intergenic -13645 NM_024291 16716 Mm.101692 NM_024291 ENSMUSG00000035606 Ky CD1|D9Mgc44e|ky kyphoscoliosis peptidase protein-coding 0.030000 0.572139 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2280 chr3 60346564 60346764 + -1.07938 NA Intergenic RMER15|LTR|ERVL -126166 NM_001253713 56758 Mm.255723 NM_020007 ENSMUSG00000027763 Mbnl1 Mbnl|mKIAA0428 muscleblind like splicing factor 1 protein-coding 0.000000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2706 chr4 149511371 149511571 + -1.07938 NA Intergenic Intergenic -6770 NM_023465 67087 Mm.299735 NM_023465 ENSMUSG00000028988 Ctnnbip1 1110008O09Rik|2310001I19Rik|AW457332|Catnbip1|Icat catenin beta interacting protein 1 protein-coding 0.015000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1277 chr15 26041214 26041414 + -1.07938 NA Intergenic Intergenic 21124 NR_155439 105245898 Mm.414064 NR_155439 ENSMUSG00000115335 Gm41279 - predicted gene, 41279 ncRNA 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2199 chr2 171633795 171633995 + -1.07938 NA Intergenic Intergenic 328904 NR_040509 75655 Mm.396203 NR_040509 ENSMUSG00000086823 1700028P15Rik - RIKEN cDNA 1700028P15 gene ncRNA 0.025000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-599 chr11 38543993 38544193 + -1.07938 NA Intergenic Intergenic -24048 NR_040295 100502917 Mm.61144 NR_040295 Gm12130 - predicted gene 12130 ncRNA 0.035000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-130 chr1 72735841 72736041 + -1.07938 NA Intergenic Intergenic 24681 NM_009084 19981 Mm.21529 NM_009084 ENSMUSG00000046330 Rpl37a - ribosomal protein L37a protein-coding 0.025000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1672 chr18 6077964 6078164 + -1.07938 NA intron (NM_001039692, intron 3 of 18) intron (NM_001039692, intron 3 of 18) 58034 NM_001039692 75415 Mm.239675 NM_029277 ENSMUSG00000041225 Arhgap12 2810011M08Rik Rho GTPase activating protein 12 protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2866 chr5 111855282 111855482 + -1.07938 NA Intergenic Intergenic -93654 NR_045834 269683 Mm.136946 NM_207252 ENSMUSG00000085271 E130006D01Rik Gm16018|Gm681 RIKEN cDNA E130006D01 gene ncRNA 0.005000 0.328358 -44(TATGAATATTGTATA,+,0.00) -4(ATTGCATATGTATG,+,0.00),-4(ATTGCATATGTATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1564 chr16 97578764 97578964 + -1.07938 NA intron (NM_015775, intron 5 of 13) intron (NM_015775, intron 5 of 13) 32331 NM_015775 50528 Mm.276145 NM_015775 ENSMUSG00000000385 Tmprss2 D16Ertd61e transmembrane protease, serine 2 protein-coding 0.005000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3115 chr7 52633081 52633281 + -1.07938 NA Intergenic Intergenic -617465 NM_001195601 100503036 Mm.279725 NM_001195601 ENSMUSG00000094445 1700015G11Rik Ccdc179 RIKEN cDNA 1700015G11 gene protein-coding 0.000000 0.338308 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-337 chr2 143634989 143635189 + -1.08558 NA intron (NM_008792, intron 2 of 11) intron (NM_008792, intron 2 of 11) -87252 NR_040354 378776 Mm.381216 NR_040354 ENSMUSG00000086171 Pcsk2os1 C630020P19Rik proprotein convertase subtilisin/kexin type 2, opposite strand 1 ncRNA 0.005000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-460 chr6 11653441 11653641 + -1.08561 NA Intergenic Intergenic 253909 NM_010886 17992 Mm.415865 NM_010886 ENSMUSG00000029632 Ndufa4 MLRQ Ndufa4, mitochondrial complex associated protein-coding 0.000000 0.402985 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-510 chr7 131236244 131236444 + -1.08561 NA intron (NM_001370825, intron 16 of 68) intron (NM_001370825, intron 16 of 68) 61942 NM_001370825 71395 Mm.118845 NM_175166 ENSMUSG00000006204 5430419D17Rik - RIKEN cDNA 5430419D17 gene protein-coding 0.000000 0.363184 -35(CTTTTTTTTTTTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-646 chr11 64916752 64916952 + -1.08561 NA Intergenic Intergenic -62183 NM_023479 68626 Mm.157711 NM_023479 ENSMUSG00000020549 Elac2 1110017O07Rik|D11Wsu80e|Hpc2 elaC ribonuclease Z 2 protein-coding 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2848 chr5 96662383 96662583 + -1.08561 NA intron (NM_175473, intron 29 of 73) intron (NM_175473, intron 29 of 73) -130902 NM_013470 11745 Mm.7214 NM_013470 ENSMUSG00000029484 Anxa3 Anx3 annexin A3 protein-coding 0.000000 0.358209 -68(AATGAATGATGCATA,+,0.00),-68(AATGAATGATGCATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3268 chr8 7841758 7841958 + -1.08561 NA Intergenic Intergenic 819384 NM_001368299 13642 Mm.209813 NM_010111 ENSMUSG00000001300 Efnb2 ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1 ephrin B2 protein-coding 0.010000 0.333333 32(CTTTTTTCTTACATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2924 chr6 11653378 11653578 + -1.08561 NA Intergenic Intergenic 253972 NM_010886 17992 Mm.415865 NM_010886 ENSMUSG00000029632 Ndufa4 MLRQ Ndufa4, mitochondrial complex associated protein-coding 0.000000 0.412935 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-470 chr6 42444593 42444793 + -1.08570 NA Intergenic (TC)n|Simple_repeat|Simple_repeat 10158 NM_207028 387353 Mm.377914 NM_207028 ENSMUSG00000048284 Tas2r126 T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35 taste receptor, type 2, member 126 protein-coding 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2968 chr6 42444547 42444747 + -1.08570 NA Intergenic Intergenic 10112 NM_207028 387353 Mm.377914 NM_207028 ENSMUSG00000048284 Tas2r126 T2R12|T2R26|Tas2r26|Tas2r41|mGR26|mt2r35 taste receptor, type 2, member 126 protein-coding 0.000000 0.442786 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-44 chr10 18111388 18111588 + -1.08572 NA intron (NM_009048, intron 10 of 19) intron (NM_009048, intron 10 of 19) 55548 NM_001111065 19707 Mm.4479 NM_009048 ENSMUSG00000019854 Reps1 BB161292 RalBP1 associated Eps domain containing protein protein-coding 0.000000 0.393035 20(ATTTGAATAAGTAGAA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-311 chr2 39754018 39754218 + -1.08572 NA Intergenic RLTR17|LTR|ERVK -527769 NM_024209 67857 Mm.389242 NM_024209 ENSMUSG00000026753 Ppp6c 2310003C10Rik|Pp6C protein phosphatase 6, catalytic subunit protein-coding 0.000000 0.417910 -38(TATTTTTTATGTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2472 chr3 143993749 143993949 + -1.08572 NA Intergenic Intergenic 208483 NM_001161770 16911 Mm.29187 NM_010723 ENSMUSG00000028266 Lmo4 A730077C12Rik|Crp3|Etohi4 LIM domain only 4 protein-coding 0.000000 0.373134 -94(AATGCATTTTCAAA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-476 chr6 73944283 73944483 + -1.08572 NA Intergenic L1_Mur3|LINE|L1 -335710 NR_157242 102634075 Mm.78553 NR_157242 ENSMUSG00000107441 Gm31747 - predicted gene, 31747 ncRNA 0.000000 0.338308 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-86 chr10 120673736 120673936 + -1.08572 NA Intergenic Intergenic -91896 NR_038000 70874 Mm.427286 NR_038000 ENSMUSG00000044544 4921513I03Rik - RIKEN cDNA 4921513I03 gene ncRNA 0.010000 0.378109 83(TTTTTGTCTTTTAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-900 chr13 15828747 15828947 + -1.08592 NA intron (NR_155430, intron 3 of 3) intron (NR_155430, intron 3 of 3) 21604 NR_046131 328190 Mm.446957 NR_046131 ENSMUSG00000113338 A530046M15Rik A530046M15 RIKEN cDNA A530046M15 gene ncRNA 0.010000 0.343284 -80(GAATTGTTATGAAAAG,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-535 chr8 101412256 101412456 + -1.08598 NA Intergenic MER67C|LTR|ERV1 1372755 NM_009866 12552 Mm.1571 NM_009866 ENSMUSG00000031673 Cdh11 Cad11|OSF-4 cadherin 11 protein-coding 0.000000 0.323383 15(CTTTTGAGATTCAAAT,+,0.00),38(TTTCTCTCATTCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3421 chr8 101412272 101412472 + -1.08598 NA Intergenic MER67C|LTR|ERV1 1372739 NM_009866 12552 Mm.1571 NM_009866 ENSMUSG00000031673 Cdh11 Cad11|OSF-4 cadherin 11 protein-coding 0.000000 0.308458 -1(CTTTTGAGATTCAAAT,+,0.00),22(TTTCTCTCATTCATAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-428 chr5 43102882 43103082 + -1.08622 NA Intergenic Intergenic -130271 NM_001177379 231207 Mm.7233 NM_175937 ENSMUSG00000039782 Cpeb2 A630055H10Rik|Cpe-bp2 cytoplasmic polyadenylation element binding protein 2 protein-coding 0.020000 0.368159 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-28 chr1 140375157 140375357 + -1.08622 NA intron (NM_001081027, intron 6 of 27) intron (NM_001081027, intron 6 of 27) 129539 NM_001081027 240776 Mm.483845 NM_001081027 ENSMUSG00000052726 Kcnt2 E330038N15Rik|Slick potassium channel, subfamily T, member 2 protein-coding 0.000000 0.288557 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2 chr1 19849892 19850092 + -1.08622 NA Intergenic Intergenic -506462 NR_045734 75028 Mm.417820 NR_045734 ENSMUSG00000089914 4930486I03Rik - RIKEN cDNA 4930486I03 gene ncRNA 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-366 chr10 24211054 24211254 + -1.08622 NA Intergenic Intergenic -12363 NM_021509 59012 Mm.285934 NM_021509 ENSMUSG00000020000 Moxd1 3230402N08Rik|MNCb-5203 monooxygenase, DBH-like 1 protein-coding 0.015000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3226 chr7 125420125 125420325 + -1.08622 NA Intergenic Intergenic -24395 NM_029842 77035 Mm.307239 NM_029842 ENSMUSG00000030752 Kdm8 3110005O21Rik|Jmjd5 lysine (K)-specific demethylase 8 protein-coding 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3660 chr9 120350245 120350445 + -1.08622 NA intron (NM_144557, intron 2 of 16) intron (NM_144557, intron 2 of 16) 46272 NM_144557 245049 Mm.100936 NM_144557 ENSMUSG00000041794 Myrip A230081N12Rik|Slac2-c|Slac2c myosin VIIA and Rab interacting protein protein-coding 0.010000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-836 chr12 85486816 85487016 + -1.08622 NA Intergenic CpG 13026 NM_010234 14281 Mm.246513 NM_010234 ENSMUSG00000021250 Fos D12Rfj1|c-fos|cFos FBJ osteosarcoma oncogene protein-coding 0.070000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3582 chr9 80809424 80809624 + -1.08628 NA Intergenic Intergenic -344086 NM_022016 63859 Mm.422780 NM_022016 ENSMUSG00000032343 Impg1 A930015H12Rik|IMP150|SPACR interphotoreceptor matrix proteoglycan 1 protein-coding 0.010000 0.368159 64(ATCTCAATCACAAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1954 chr2 19571420 19571620 + -1.08628 NA Intergenic L1MA4|LINE|L1 -17610 NM_027600 70909 Mm.158488 NM_027600 ENSMUSG00000026734 4921504E06Rik 4921522E24Rik RIKEN cDNA 4921504E06 gene protein-coding 0.000000 0.373134 -17(ATTTGCAGCACAATCA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-279 chr18 58517931 58518131 + -1.08628 NA Intergenic Intergenic -38209 NM_001081072 225579 Mm.258517 NM_001081072 ENSMUSG00000024600 Slc27a6 4732438L20Rik|FACVL2|FATP6|VLCS-H1 solute carrier family 27 (fatty acid transporter), member 6 protein-coding 0.005000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-566 chr9 80809410 80809610 + -1.08628 NA Intergenic Intergenic -344072 NM_022016 63859 Mm.422780 NM_022016 ENSMUSG00000032343 Impg1 A930015H12Rik|IMP150|SPACR interphotoreceptor matrix proteoglycan 1 protein-coding 0.005000 0.353234 78(ATCTCAATCACAAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2348 chr3 93568737 93568937 + -1.08628 NA Intergenic Intergenic 13720 NM_009112 20194 Mm.1 NM_009112 ENSMUSG00000041959 S100a10 42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11 S100 calcium binding protein A10 (calpactin) protein-coding 0.000000 0.462687 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-398 chr4 52167139 52167339 + -1.08655 NA Intergenic MTC|LTR|ERVL-MaLR -116129 NR_040668 329844 Mm.128934 NR_040668 ENSMUSG00000085515 C630028M04Rik - RIKEN cDNA C630028M04 gene ncRNA 0.015000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3638 chr9 107278676 107278876 + -1.08663 NA intron (NM_178907, intron 2 of 10) intron (NM_178907, intron 2 of 10) 10620 NM_001316691 102626 Mm.222612 NM_178907 ENSMUSG00000032577 Mapkapk3 3PK|AI874665|MAPKAP-K3|MAPKAP3|MK-3|MK3|MapkKapk3 mitogen-activated protein kinase-activated protein kinase 3 protein-coding 0.010000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-295 chr1 177623460 177623660 + -1.08663 NA Intergenic Intergenic 19383 NR_037994 75589 Mm.86666 NR_037994 ENSMUSG00000101746 2310043L19Rik - RIKEN cDNA 2310043L19 gene ncRNA 0.010000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-231 chr1 135892113 135892313 + -1.08663 NA intron (NM_019645, intron 2 of 13) intron (NM_019645, intron 2 of 13) 26994 NM_001313701 18772 Mm.4494 NM_019645 ENSMUSG00000026413 Pkp1 - plakophilin 1 protein-coding 0.015000 0.577114 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-244 chr17 9895359 9895559 + -1.08663 NA Intergenic Intergenic -119593 NR_045433 71092 Mm.243827 NR_045433 ENSMUSG00000117264 4930452A19Rik 4933424P20Rik RIKEN cDNA 4930452A19 gene ncRNA 0.025000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-425 chr10 56920892 56921092 + -1.08663 NA Intergenic Plat_L3|LINE|CR1 489011 NR_152769 102640560 Mm.417249 NR_152768 Gm36595 - predicted gene, 36595 ncRNA 0.015000 0.437811 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-46 chr10 21342631 21342831 + -1.08663 NA promoter-TSS (NR_045352) promoter-TSS (NR_045352) -676 NR_045352 73990 Mm.399240 NR_045352 ENSMUSG00000112654 4930455C13Rik - RIKEN cDNA 4930455C13 gene ncRNA 0.030000 0.492537 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-35 chr1 177623515 177623715 + -1.08663 NA Intergenic Intergenic 19328 NR_037994 75589 Mm.86666 NR_037994 ENSMUSG00000101746 2310043L19Rik - RIKEN cDNA 2310043L19 gene ncRNA 0.010000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1029 chr13 106405288 106405488 + -1.08663 NA Intergenic Intergenic 531570 NM_029665 76582 Mm.132208 NM_029665 ENSMUSG00000042590 Ipo11 1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11 importin 11 protein-coding 0.015000 0.412935 18(TCTTTGTCTTGAAACT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-130 chr13 11432787 11432987 + -1.08663 NA Intergenic Intergenic -89165 NR_027813 664793 Mm.410565 NR_027813 ENSMUSG00000113593 Zp4-ps EG664793|Zp4|Zpb zona pellucida glycoprotein 4, pseudogene pseudo 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1890 chr19 38954234 38954434 + -1.08703 NA intron (NM_008234, intron 13 of 21) intron (NM_008234, intron 13 of 21) 23344 NM_008234 15201 Mm.57223 NM_008234 ENSMUSG00000025001 Hells AI323785|E130115I21Rik|LSH|Lysh|PASG|YFK8 helicase, lymphoid specific protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1920 chr19 54963744 54963944 + -1.08703 NA Intergenic LTR16A|LTR|ERVL 135633 NM_008149 14732 Mm.210196 NM_008149 ENSMUSG00000024978 Gpam GPAT|GPAT-1|GPAT1|P90 glycerol-3-phosphate acyltransferase, mitochondrial protein-coding 0.010000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1448 chr16 36505380 36505580 + -1.08703 NA intron (NM_013803, intron 4 of 6) intron (NM_013803, intron 4 of 6) -50088 NM_025288 20863 Mm.136573 NM_025288 ENSMUSG00000054905 Stfa3 Stf3 stefin A3 protein-coding 0.010000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1407 chr16 5542891 5543091 + -1.08703 NA Intergenic Intergenic -287035 NM_027446 70511 Mm.45780 NM_027446 ENSMUSG00000022544 Eef2kmt 5730409G15Rik|Fam86|Fam86a|eEF2-KMT eukaryotic elongation factor 2 lysine methyltransferase protein-coding 0.010000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-911 chr13 18653025 18653225 + -1.08703 NA Intergenic RMER6C|LTR|ERVK -64167 NM_172120 218035 Mm.27389 NM_172120 ENSMUSG00000041236 Vps41 AI317346|Vam2|mVam2 VPS41 HOPS complex subunit protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-399 chr10 39385812 39386012 + -1.08703 NA intron (NM_001122893, intron 1 of 13) intron (NM_001122893, intron 1 of 13) 16113 NM_001122892 14360 Mm.4848 NM_008054 ENSMUSG00000019843 Fyn AI448320|AW552119 Fyn proto-oncogene protein-coding 0.025000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1357 chr15 78340160 78340360 + -1.08703 NA intron (NM_001358854, intron 5 of 14) intron (NM_001358854, intron 5 of 14) -8339 NR_106137 102465776 NR_106137 ENSMUSG00000098996 Mir7676-1 Gm27600|mmu-mir-7676-1 microRNA 7676-1 ncRNA 0.005000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-507 chr10 104936667 104936867 + -1.08703 NA Intergenic ORR1D1|LTR|ERVL-MaLR 637712 NM_177368 278279 Mm.25225 NM_177368 ENSMUSG00000036019 Tmtc2 8430438D04Rik|D330034A10Rik transmembrane and tetratricopeptide repeat containing 2 protein-coding 0.000000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2929 chr6 14779922 14780122 + -1.08703 NA Intergenic Lx8|LINE|L1 -24748 NM_080464 140491 Mm.209429 NM_080464 ENSMUSG00000042717 Ppp1r3a GM|RG1|RGL protein phosphatase 1, regulatory subunit 3A protein-coding 0.000000 0.358209 26(CTTTTCTCTTTCAGAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1551 chr16 89952626 89952826 + -1.08703 NA intron (NM_001145886, intron 2 of 27) intron (NM_001145886, intron 2 of 27) 8101 NM_009384 21844 Mm.310902 NM_009384 ENSMUSG00000002489 Tiam1 AI847750|D16Ium10|D16Ium10e T cell lymphoma invasion and metastasis 1 protein-coding 0.010000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2935 chr6 18569858 18570058 + -1.08703 NA Intergenic Intergenic -55089 NM_080285 30785 Mm.224189 NM_080285 ENSMUSG00000000416 Cttnbp2 3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758 cortactin binding protein 2 protein-coding 0.010000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3416 chr8 98401896 98402096 + -1.08703 NA Intergenic Intergenic -609891 NR_110579 100873092 Mm.414599 NR_110579 ENSMUSG00000089819 Gm15679 - predicted gene 15679 ncRNA 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1550 chr16 89902738 89902938 + -1.08703 NA intron (NM_001145886, intron 3 of 27) B3|SINE|B2 57989 NM_009384 21844 Mm.310902 NM_009384 ENSMUSG00000002489 Tiam1 AI847750|D16Ium10|D16Ium10e T cell lymphoma invasion and metastasis 1 protein-coding 0.020000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-573 chr11 21307261 21307461 + -1.08703 NA intron (NM_139061, intron 15 of 22) MIR|SINE|MIR 37314 NR_035454 100316753 NR_035454 ENSMUSG00000089555 Mir1933 mir-1933|mmu-mir-1933 microRNA 1933 ncRNA 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3450 chr8 114314340 114314540 + -1.08703 NA intron (NM_173016, intron 7 of 8) intron (NM_173016, intron 7 of 8) 37038 NR_045831 71122 Mm.437539 NR_045831 4933408N05Rik - RIKEN cDNA 4933408N05 gene ncRNA 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2123 chr2 129330785 129330985 + -1.08703 NA Intergenic Intergenic -20913 NM_010554 16175 Mm.15534 NM_010554 ENSMUSG00000027399 Il1a Il-1a interleukin 1 alpha protein-coding 0.025000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3385 chr8 79382949 79383149 + -1.08703 NA intron (NM_008539, intron 1 of 6) L2c|LINE|L2 16379 NM_008539 17125 Mm.223717 NM_008539 ENSMUSG00000031681 Smad1 AI528653|Mad1|Madh1|Madr1|Mlp1|MusMLP|dwf-A|mMad1 SMAD family member 1 protein-coding 0.015000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1688 chr18 15524166 15524366 + -1.08703 NA intron (NM_001364992, intron 3 of 5) Lx|LINE|L1 -113284 NM_001308646 11829 Mm.250786 NM_009700 ENSMUSG00000024411 Aqp4 WCH4 aquaporin 4 protein-coding 0.010000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1552 chr16 90229312 90229512 + -1.08703 NA exon (NM_178923, exon 20 of 20) exon (NM_178923, exon 20 of 20) 8650 NM_011434 20655 Mm.276325 NM_011434 ENSMUSG00000022982 Sod1 B430204E11Rik|Cu/Zn-SOD|CuZnSOD|Ipo-1|Ipo1|SODC|Sod-1 superoxide dismutase 1, soluble protein-coding 0.030000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1681 chr18 12823838 12824038 + -1.08703 NA intron (NM_001252491, intron 1 of 12) intron (NM_001252491, intron 1 of 12) -4031 NR_045524 64291 Mm.259470 NM_020573 ENSMUSG00000044252 Osbpl1a G430090F17Rik|Gm753|ORP-1|Osbpl1b oxysterol binding protein-like 1A protein-coding 0.015000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1560 chr16 95790813 95791013 + -1.08703 NA Intergenic ORR1E|LTR|ERVL-MaLR 88506 NM_011809 23872 Mm.290207 NM_011809 ENSMUSG00000022895 Ets2 AU022856|Ets-2 E26 avian leukemia oncogene 2, 3' domain protein-coding 0.010000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3260 chr7 142568748 142568948 + -1.08703 NA Intergenic Intergenic 8299 NR_030416 735280 NR_030416 ENSMUSG00000076275 Mir675 Mirn675|mir-675|mmu-mir-675 microRNA 675 ncRNA 0.010000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-87 chr1 56548359 56548559 + -1.08703 NA Intergenic Intergenic 88992 NM_027661 71066 Mm.152656 NM_027661 ENSMUSG00000045336 Hsfy2 4933413G11Rik|Hspy2l heat shock transcription factor, Y-linked 2 protein-coding 0.000000 0.373134 -42(GCTTTCTGATGTAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2930 chr6 16978497 16978697 + -1.08703 NA Intergenic Intergenic -80156 NM_031198 21426 Mm.36217 NM_031198 ENSMUSG00000029553 Tfec BB107417|Tcfec|bHLHe34 transcription factor EC protein-coding 0.010000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1520 chr16 74915239 74915439 + -1.08703 NA intron (NM_001358491, intron 1 of 27) intron (NM_001358491, intron 1 of 27) 177431 NM_001358492 268902 Mm.171736 NM_175549 ENSMUSG00000052516 Robo2 2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568 roundabout guidance receptor 2 protein-coding 0.000000 0.253731 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-64 chr1 44090553 44090753 + -1.08703 NA intron (NM_001356296, intron 4 of 6) intron (NM_001356296, intron 4 of 6) 11788 NM_001356297 75623 Mm.348017 NM_029368 ENSMUSG00000026049 Tex30 1700029F09Rik|3110030D08Rik testis expressed 30 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3676 chrX 13534726 13534926 + -1.08703 NA intron (NM_009806, intron 22 of 24) intron (NM_009806, intron 22 of 24) 73736 NM_173415 236690 Mm.90233 NM_173415 ENSMUSG00000051228 Nyx CLNP|CSNB1|CSNB4|nob nyctalopin protein-coding 0.005000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2664 chr4 104385355 104385555 + -1.08703 NA intron (NM_177259, intron 1 of 14) intron (NM_177259, intron 1 of 14) 17917 NR_104385 13131 Mm.289682 NM_010014 ENSMUSG00000028519 Dab1 AI956902|C630028C02Rik|scm|scr|scrambler|yot disabled 1 protein-coding 0.015000 0.407960 39(CTAGTCTCATGTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3056 chr6 113412498 113412698 + -1.08703 NA intron (NM_133923, intron 11 of 12) intron (NM_133923, intron 11 of 12) 6742 NM_001033204 101122 Mm.31204 NM_001033204 ENSMUSG00000051169 Rpusd3 AI527266 RNA pseudouridylate synthase domain containing 3 protein-coding 0.015000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2950 chr6 32413021 32413221 + -1.08703 NA intron (NM_175750, intron 3 of 31) intron (NM_175750, intron 3 of 31) -98020 NR_040277 319849 Mm.440860 NR_040277 ENSMUSG00000086763 Plxna4os1 B230378P21Rik plexin A4, opposite strand 1 ncRNA 0.005000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2185 chr2 162390543 162390743 + -1.08703 NA promoter-TSS (NR_040617) promoter-TSS (NR_040617) -170 NR_040617 77645 Mm.447752 NR_040617 ENSMUSG00000084919 Ptprtos C330008G21Rik protein tyrosine phosphatase, receptor type T, opposite strand ncRNA 0.000000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-411 chr4 83882002 83882202 + -1.08717 NA Intergenic ORR1F|LTR|ERVL-MaLR 162777 NR_130998 78238 Mm.243903 NR_130998 ENSMUSG00000085217 6030471H07Rik - RIKEN cDNA 6030471H07 gene ncRNA 0.010000 0.427861 -57(ATTAGCAACAAAAGGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1048 chr13 116405113 116405313 + -1.08717 NA Intergenic Lx2B|LINE|L1 -95525 NM_021459 16392 Mm.42242 NM_021459 ENSMUSG00000042258 Isl1 - ISL1 transcription factor, LIM/homeodomain protein-coding 0.010000 0.442786 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-273 chr18 40436211 40436411 + -1.08717 NA intron (NM_026135, intron 2 of 2) intron (NM_026135, intron 2 of 2) 179312 NM_026135 383348 Mm.76366 NM_026135 ENSMUSG00000051401 Kctd16 4930434H12Rik|Gm1267 potassium channel tetramerisation domain containing 16 protein-coding 0.005000 0.383085 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-505 chr7 95141337 95141537 + -1.08717 NA Intergenic MER34|LTR|ERV1 -1029807 NM_001310762 23966 Mm.254610 NM_011858 ENSMUSG00000048078 Tenm4 Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302 teneurin transmembrane protein 4 protein-coding 0.005000 0.338308 -41(ATTAACAAAAGAAGAA,-,0.00),16(CCTTGGACATGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2057 chr2 95442234 95442434 + -1.08717 NA Intergenic Intergenic -875835 NM_001289742 241568 Mm.241682 NM_178725 ENSMUSG00000050587 Lrrc4c 6430556C10Rik|NGL-1 leucine rich repeat containing 4C protein-coding 0.015000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-183 chr14 110510845 110511045 + -1.08755 NA Intergenic MLT1D|LTR|ERVL-MaLR 244204 NM_175499 239250 Mm.49728 NM_175499 ENSMUSG00000045871 Slitrk6 4832410J21Rik|Sltk6 SLIT and NTRK-like family, member 6 protein-coding 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-843 chr12 92916482 92916682 + -1.08787 NA Intergenic RMER15|LTR|ERVL 528241 NR_126436 75295 Mm.243878 NR_126436 ENSMUSG00000113164 4930559C10Rik - RIKEN cDNA 4930559C10 gene ncRNA 0.000000 0.378109 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-509 chr7 120578920 120579120 + -1.08787 NA Intergenic Intergenic -18605 NR_024324 78552 Mm.289190 NR_024324 ENSMUSG00000044141 E130201H02Rik - Y box protein 1 pseudogene pseudo 0.015000 0.393035 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-320 chr2 75200538 75200738 + -1.08787 NA Intergenic Intergenic 243541 NR_040635 77269 Mm.389278 NR_040635 9430019J16Rik - RIKEN cDNA 9430019J16 gene ncRNA 0.005000 0.333333 -5(TATTCATATTCATT,+,0.00),-5(TATTCATATTCATT,-,0.00),14(TATGCATATGCAAC,+,0.00),14(TATGCATATGCAAC,-,0.00) -2(TCATATTCATTCAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-46 chr1 33148534 33148734 + -1.08787 NA Intergenic Intergenic 521160 NM_008922 19076 Mm.27705 NM_008922 ENSMUSG00000026134 Prim2 AI323589 DNA primase, p58 subunit protein-coding 0.010000 0.383085 -64(GTTTTCTTTTGTTGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-780 chr12 43827554 43827754 + -1.08787 NA Intergenic Intergenic 382414 NM_013760 27362 Mm.27432 NM_013760 ENSMUSG00000014905 Dnajb9 AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 0.010000 0.467662 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-333 chr2 131283757 131283957 + -1.08787 NA TTS (NM_001355679) TTS (NM_001355679) -4195 NR_029755 723825 NR_029755 ENSMUSG00000065563 Mir103-2 Mirn103-2|mir-103-2 microRNA 103-2 ncRNA 0.005000 0.422886 11(TTTTTCCCATACAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3361 chr8 65375085 65375285 + -1.08787 NA Intergenic Intergenic -242855 NM_001166372 72925 Mm.380457 NM_175188 ENSMUSG00000036469 March1 2900024D24Rik|BB085186 membrane-associated ring finger (C3HC4) 1 protein-coding 0.000000 0.363184 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-117 chr12 43827109 43827309 + -1.08787 NA Intergenic MLT1C|LTR|ERVL-MaLR 382859 NM_013760 27362 Mm.27432 NM_013760 ENSMUSG00000014905 Dnajb9 AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2127 chr2 131283831 131284031 + -1.08787 NA TTS (NM_001355679) TTS (NM_001355679) -4121 NR_029755 723825 NR_029755 ENSMUSG00000065563 Mir103-2 Mirn103-2|mir-103-2 microRNA 103-2 ncRNA 0.000000 0.393035 -63(TTTTTCCCATACAAAT,+,0.00),83(CTATTGTCATTGAGAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-113 chr12 37653940 37654140 + -1.08833 NA Intergenic MTEb|LTR|ERVL-MaLR -226134 NM_001361688 217480 Mm.126525 NM_178681 ENSMUSG00000036095 Dgkb 6430574F24|90kda|C630029D13Rik|DAGK2|DGK|DGK-beta|mKIAA0718 diacylglycerol kinase, beta protein-coding 0.010000 0.432836 75(CATGTATATTTATC,+,0.00) 13(CCTTTCTTCTTTAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-471 chr6 45125278 45125478 + -1.08874 NA intron (NM_001004357, intron 1 of 23) intron (NM_001004357, intron 1 of 23) 65317 NM_001004357 66797 Mm.440084 NM_025771 ENSMUSG00000039419 Cntnap2 5430425M22Rik|Caspr2|mKIAA0868 contactin associated protein-like 2 protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2970 chr6 45125223 45125423 + -1.08874 NA intron (NM_001004357, intron 1 of 23) intron (NM_001004357, intron 1 of 23) 65262 NM_001004357 66797 Mm.440084 NM_025771 ENSMUSG00000039419 Cntnap2 5430425M22Rik|Caspr2|mKIAA0868 contactin associated protein-like 2 protein-coding 0.000000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2378 chr3 109329183 109329383 + -1.08874 NA Intergenic L1MA7|LINE|L1 -11400 NM_020505 57257 Mm.282257 NM_020505 ENSMUSG00000033721 Vav3 A530094I06Rik|AA986410|Idd18.1 vav 3 oncogene protein-coding 0.000000 0.323383 -37(TATCCATTATGCATG,+,0.00),-37(TATCCATTATGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1950 chr2 14279225 14279425 + -1.08874 NA intron (NM_008625, intron 10 of 29) RMER15|LTR|ERVL 18322 NR_030609 100124488 NR_030609 ENSMUSG00000077897 Mir511 Mirn511|mir-511|mmu-mir-511 microRNA 511 ncRNA 0.005000 0.393035 -24(AATGTTTATTCATG,-,0.00) -86(CTATTATAATGTAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-435 chr10 62299993 62300193 + -1.08874 NA intron (NM_010438, intron 6 of 21) intron (NM_010438, intron 6 of 21) 40328 NM_001146100 15275 Mm.196605 NM_010438 ENSMUSG00000037012 Hk1 BB404130|Hk-1|Hk1-s|dea|mHk1-s hexokinase 1 protein-coding 0.040000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-337 chr10 9537063 9537263 + -1.08874 NA Intergenic Intergenic 138045 NM_177271 320825 Mm.101115 NM_177271 ENSMUSG00000060487 Samd5 E130306M17Rik sterile alpha motif domain containing 5 protein-coding 0.000000 0.298507 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1183 chr14 93733761 93733961 + -1.08874 NA intron (NM_001081377, intron 2 of 4) intron (NM_001081377, intron 2 of 4) 156808 NM_001271799 211712 Mm.37126 NM_001081377 ENSMUSG00000055421 Pcdh9 - protocadherin 9 protein-coding 0.005000 0.412935 85(CTTGAAAAATGCATG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-634 chr11 62148002 62148202 + -1.08874 NA intron (NM_001029936, intron 7 of 12) intron (NM_001029936, intron 7 of 12) 71078 NM_001029936 432572 Mm.438022 NM_001029936 ENSMUSG00000042331 Specc1 2810012G08Rik|B230396K10Rik|Cytsb sperm antigen with calponin homology and coiled-coil domains 1 protein-coding 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3467 chr8 127548588 127548788 + -1.08964 NA intron (NM_001363431, intron 22 of 24) intron (NM_001363431, intron 22 of 24) 249076 NM_001013580 93742 Mm.299254 NM_033620 ENSMUSG00000025812 Pard3 AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip par-3 family cell polarity regulator protein-coding 0.030000 0.512438 -36(TTATGAATGAAAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2909 chr5 146417074 146417274 + -1.08981 NA intron (NM_145155, intron 1 of 9) intron (NM_145155, intron 1 of 9) 32168 NM_145155 245880 Mm.472750 NM_145155 ENSMUSG00000029636 Wasf3 Scar3|Wave3 WAS protein family, member 3 protein-coding 0.010000 0.427861 35(ATTATCATAAGAAACA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-27 chr1 131469530 131469730 + -1.08981 NA intron (NM_001081011, intron 2 of 22) (CAAAA)n|Simple_repeat|Simple_repeat 57731 NM_001081011 14270 Mm.276259 NM_019520 ENSMUSG00000026425 Srgap2 9930124L22Rik|AI448945|FBP2|Fnbp2|srGAP3 SLIT-ROBO Rho GTPase activating protein 2 protein-coding 0.000000 0.388060 -81(CATTTTTTATGTAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-868 chr12 106475943 106476143 + -1.08981 NA Intergenic Intergenic -28377 NR_036593 76639 Mm.375609 NR_036593 ENSMUSG00000092066 1700121N20Rik - RIKEN cDNA 1700121N20 gene ncRNA 0.015000 0.462687 -25(GCTTTCTTATTGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1843 chr19 16007591 16007791 + -1.08981 NA intron (NR_045355, intron 2 of 2) intron (NR_045355, intron 2 of 2) 22616 NR_045355 100502653 Mm.149980 NR_045355 ENSMUSG00000097557 C130060C02Rik - RIKEN cDNA C130060C02 gene ncRNA 0.005000 0.363184 -83(CATTTTTCCTTCAAAT,+,0.00),-14(CCTTTTTTTTGGATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2197 chr2 170764662 170764862 + -1.08981 NA intron (NM_029761, intron 1 of 7) intron (NM_029761, intron 1 of 7) 32955 NM_029761 76829 Mm.41633 NM_029761 ENSMUSG00000027560 Dok5 2700055C10Rik docking protein 5 protein-coding 0.000000 0.427861 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-374 chr3 101162839 101163039 + -1.08981 NA Intergenic Intergenic -52773 NM_011197 19221 Mm.24807 NM_011197 ENSMUSG00000027864 Ptgfrn 4833445A08Rik|AU042434|CD9P-1|EWI-F|FPRP|Trim45 prostaglandin F2 receptor negative regulator protein-coding 0.030000 0.427861 41(CATGCATATGCATG,+,0.00),41(CATGCATATGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2198 chr2 170764790 170764990 + -1.08981 NA intron (NM_029761, intron 1 of 7) intron (NM_029761, intron 1 of 7) 33083 NM_029761 76829 Mm.41633 NM_029761 ENSMUSG00000027560 Dok5 2700055C10Rik docking protein 5 protein-coding 0.015000 0.507463 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-93 chr11 27212587 27212787 + -1.08981 NA Intergenic MTB_Mm|LTR|ERVL-MaLR 427579 NR_002890 654472 Mm.347777 NR_002890 Gm12070 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 0.000000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2400 chr3 117411887 117412087 + -1.08981 NA Intergenic Intergenic -51111 NM_177664 229791 Mm.140138 NM_177664 ENSMUSG00000044667 Plppr4 A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455 phospholipid phosphatase related 4 protein-coding 0.010000 0.343284 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-361 chr3 77482818 77483018 + -1.08981 NA Intergenic Intergenic 1407335 NM_001253719 213262 Mm.379337 NM_178673 ENSMUSG00000034098 Fstl5 9130207J01Rik follistatin-like 5 protein-coding 0.000000 0.283582 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-345 chr2 170764708 170764908 + -1.08981 NA intron (NM_029761, intron 1 of 7) intron (NM_029761, intron 1 of 7) 33001 NM_029761 76829 Mm.41633 NM_029761 ENSMUSG00000027560 Dok5 2700055C10Rik docking protein 5 protein-coding 0.010000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-405 chr10 45776162 45776362 + -1.08981 NA Intergenic L1M4|LINE|L1 -31442 NR_040624 320363 Mm.123343 NR_040624 ENSMUSG00000110874 D030045P18Rik - RIKEN cDNA D030045P18 gene ncRNA 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1935 chr2 7089095 7089295 + -1.08981 NA intron (NM_001110231, intron 3 of 15) intron (NM_001110231, intron 3 of 15) -7893 NM_001160292 14007 Mm.398543 NM_010160 ENSMUSG00000002107 Celf2 B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3 CUGBP, Elav-like family member 2 protein-coding 0.005000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3557 chr9 63797466 63797666 + -1.08981 NA Intergenic L1MA4|LINE|L1 -39572 NM_016769 17127 Mm.7320 NM_016769 ENSMUSG00000032402 Smad3 AU022421|Madh3 SMAD family member 3 protein-coding 0.010000 0.378109 -56(CATTTGTCTTTCTAAA,+,0.00),30(ATTTGAATGAATAAAA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-82 chr10 111746012 111746212 + -1.09010 NA Intergenic Intergenic 128264 NR_046029 629206 Mm.391444 NR_046029 ENSMUSG00000112533 Gm20758 - predicted gene, 20758 ncRNA 0.015000 0.527363 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-69 chr10 80649279 80649479 + -1.09112 NA intron (NM_145361, intron 1 of 8) intron (NM_145361, intron 1 of 8) 7692 NM_145361 208198 Mm.60720 NM_145361 ENSMUSG00000003344 Btbd2 2610037C03Rik|4930512K17Rik BTB (POZ) domain containing 2 protein-coding 0.015000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2881 chr5 122693876 122694076 + -1.09112 NA Intergenic L1MB5|LINE|L1 11379 NR_106195 102465902 NR_106195 ENSMUSG00000099324 Mir8115 Gm28012|mmu-mir-8115 microRNA 8115 ncRNA 0.015000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1208 chr14 112239738 112239938 + -1.09112 NA Intergenic L1M4|LINE|L1 564723 NM_198865 75409 Mm.235097 NM_029273 ENSMUSG00000033214 Slitrk5 2610019D03Rik SLIT and NTRK-like family, member 5 protein-coding 0.000000 0.313433 -34(CATTCATATTTCATG,+,0.00),-34(CATTCATATTTCATG,-,0.00) -77(TCATATTCATTGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-82 chr1 54023742 54023942 + -1.09112 NA intron (NM_001001883, intron 2 of 28) intron (NM_001001883, intron 2 of 28) 171192 NM_172655 329152 Mm.132150 NM_172655 ENSMUSG00000042807 Hecw2 A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-254 chr1 149170994 149171194 + -1.09112 NA Intergenic Intergenic 751345 NM_001305632 18783 Mm.4186 NM_008869 ENSMUSG00000056220 Pla2g4a Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 0.020000 0.412935 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-568 chr9 97848187 97848387 + -1.09112 NA intron (NM_022319, intron 1 of 17) intron (NM_022319, intron 1 of 17) -155133 NR_110443 66737 Mm.445908 NR_110443 ENSMUSG00000090255 4921534H16Rik - RIKEN cDNA 4921534H16 gene ncRNA 0.020000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1500 chr16 65675438 65675638 + -1.09112 NA Intergenic Intergenic -112776 NM_026879 68942 Mm.432944 NM_026879 ENSMUSG00000004843 Chmp2b 1190006E07Rik charged multivesicular body protein 2B protein-coding 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2661 chr4 102852335 102852535 + -1.09112 NA intron (NM_001285852, intron 1 of 25) intron (NM_001285852, intron 1 of 25) 92300 NM_001285860 73094 Mm.54201 NM_144906 ENSMUSG00000028524 Sgip1 3110007P09Rik|SGIP1alpha|gag SH3-domain GRB2-like (endophilin) interacting protein 1 protein-coding 0.010000 0.472637 37(TATTCATATGCATA,+,0.00),37(TATTCATATGCATA,-,0.00),43(TATGCATATGCATA,+,0.00),43(TATGCATATGCATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3595 chr9 86346547 86346747 + -1.09112 NA intron (NM_027394, intron 9 of 9) intron (NM_027394, intron 9 of 9) 118269 NM_027394 70348 Mm.53469 NM_027394 ENSMUSG00000032415 Ube2cbp 2610018I03Rik|Ube3d ubiquitin-conjugating enzyme E2C binding protein protein-coding 0.005000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-940 chr13 35384546 35384746 + -1.09112 NA Intergenic Intergenic -172598 NR_126478 75543 Mm.489052 NR_126478 ENSMUSG00000113770 1700019C18Rik - RIKEN cDNA 1700019C18 gene ncRNA 0.015000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1684 chr18 13066297 13066497 + -1.09112 NA Intergenic Intergenic 59407 NM_153087 225192 Mm.207073 NM_153087 ENSMUSG00000037346 Hrh4 AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R histamine receptor H4 protein-coding 0.000000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-539 chr10 127927927 127928127 + -1.09112 NA Intergenic Intergenic 29492 NM_027301 70061 Mm.158320 NM_027301 ENSMUSG00000040127 Sdr9c7 1810054F20Rik|Rdh20|Rdhs|SDR-O|Sdro 4short chain dehydrogenase/reductase family 9C, member 7 protein-coding 0.005000 0.373134 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-368 chr3 84418072 84418272 + -1.09112 NA Intergenic RMER17C2|LTR|ERVK -38251 NR_040752 75309 Mm.159497 NR_040752 ENSMUSG00000104004 4930565D16Rik - RIKEN cDNA 4930565D16 gene ncRNA 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1517 chr16 73325793 73325993 + -1.09112 NA Intergenic Intergenic 662744 NM_019413 19876 Mm.310772 NM_019413 ENSMUSG00000022883 Robo1 AW494633|AW742721|DUTT1|Gm310 roundabout guidance receptor 1 protein-coding 0.000000 0.323383 -2(TTTACATATGCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3095 chr7 6882622 6882822 + -1.09112 NA intron (NM_001360502, intron 2 of 7) intron (NM_001360502, intron 2 of 7) 79135 NR_037213 100499513 NR_037213 ENSMUSG00000092815 Mir3099 mir-3099|mmu-mir-3099 microRNA 3099 ncRNA 0.020000 0.462687 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-232 chr16 73325837 73326037 + -1.09112 NA Intergenic Intergenic 662788 NM_019413 19876 Mm.310772 NM_019413 ENSMUSG00000022883 Robo1 AW494633|AW742721|DUTT1|Gm310 roundabout guidance receptor 1 protein-coding 0.010000 0.333333 -46(TTTACATATGCATA,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-342 chr2 151595067 151595267 + -1.09112 NA intron (NM_198214, intron 5 of 5) intron (NM_198214, intron 5 of 5) 22544 NM_145535 228765 Mm.32068 NM_145535 ENSMUSG00000027456 Sdcbp2 - syndecan binding protein (syntenin) 2 protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1495 chr16 64085762 64085962 + -1.09112 NA Intergenic Intergenic -221687 NM_001362452 13837 Mm.1977 NM_010140 ENSMUSG00000052504 Epha3 AW492086|Cek4|EK4|ETK1|End3|Hek|Hek4|Mek4|Tyro4 Eph receptor A3 protein-coding 0.005000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2660 chr4 102852166 102852366 + -1.09112 NA intron (NM_001285852, intron 1 of 25) intron (NM_001285852, intron 1 of 25) 92131 NM_001285860 73094 Mm.54201 NM_144906 ENSMUSG00000028524 Sgip1 3110007P09Rik|SGIP1alpha|gag SH3-domain GRB2-like (endophilin) interacting protein 1 protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2824 chr5 86431540 86431740 + -1.09112 NA intron (NM_001033233, intron 4 of 8) intron (NM_001033233, intron 4 of 8) 37350 NM_001033233 194597 Mm.249106 NM_001033233 ENSMUSG00000072845 Tmprss11a Gm7 transmembrane protease, serine 11a protein-coding 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2825 chr5 86431696 86431896 + -1.09112 NA intron (NM_001033233, intron 4 of 8) intron (NM_001033233, intron 4 of 8) 37194 NM_001033233 194597 Mm.249106 NM_001033233 ENSMUSG00000072845 Tmprss11a Gm7 transmembrane protease, serine 11a protein-coding 0.020000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1511 chr16 70229323 70229523 + -1.09270 NA Intergenic Intergenic -84526 NM_028803 74185 Mm.396102 NM_028803 ENSMUSG00000022707 Gbe1 2310045H19Rik|2810426P10Rik|D16Ertd536e glucan (1,4-alpha-), branching enzyme 1 protein-coding 0.025000 0.477612 37(ATGTCCATCACAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2246 chr3 39410395 39410595 + -1.09270 NA Intergenic Intergenic 523555 NM_183221 329628 Mm.316210 NM_183221 ENSMUSG00000046743 Fat4 6030410K14Rik|9430004M15 FAT atypical cadherin 4 protein-coding 0.000000 0.388060 -13(GATGCTTATGAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2919 chr6 7092588 7092788 + -1.09270 NA Intergenic Intergenic 136670 NM_001077713 71238 Mm.389086 NM_001077713 ENSMUSG00000042505 Sdhaf3 0610005M07Rik|4933430A16Rik|Acn9 succinate dehydrogenase complex assembly factor 3 protein-coding 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-765 chr12 35925204 35925404 + -1.09270 NA promoter-TSS (NM_207531) promoter-TSS (NM_207531) -317 NM_207531 403205 Mm.190508 NM_207531 ENSMUSG00000036231 Agr3 BCMP11|E030025L21Rik|Gm888 anterior gradient 3 protein-coding 0.010000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-412 chr4 96004886 96005086 + -1.09270 NA intron (NM_030014, intron 12 of 21) L1M2|LINE|L1 -37331 NR_045776 319247 Mm.473527 NM_175680 ENSMUSG00000044125 9530080O11Rik - RIKEN cDNA 9530080O11 gene ncRNA 0.005000 0.368159 85(TCATTCTTTTGTAAAA,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-185 chr14 112239612 112239812 + -1.09270 NA Intergenic Intergenic 564597 NM_198865 75409 Mm.235097 NM_029273 ENSMUSG00000033214 Slitrk5 2610019D03Rik SLIT and NTRK-like family, member 5 protein-coding 0.000000 0.328358 49(TCATATTCATTGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2281 chr3 60389161 60389361 + -1.09270 NA Intergenic Intergenic -83569 NM_001253713 56758 Mm.255723 NM_020007 ENSMUSG00000027763 Mbnl1 Mbnl|mKIAA0428 muscleblind like splicing factor 1 protein-coding 0.010000 0.353234 56(ATTTGTATGAAAAGGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1575 chr17 9896344 9896544 + -1.09270 NA Intergenic Intergenic -120578 NR_045433 71092 Mm.243827 NR_045433 ENSMUSG00000117264 4930452A19Rik 4933424P20Rik RIKEN cDNA 4930452A19 gene ncRNA 0.010000 0.462687 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-245 chr17 9896294 9896494 + -1.09270 NA Intergenic Intergenic -120528 NR_045433 71092 Mm.243827 NR_045433 ENSMUSG00000117264 4930452A19Rik 4933424P20Rik RIKEN cDNA 4930452A19 gene ncRNA 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-877 chr12 119204706 119204906 + -1.09270 NA intron (NM_177290, intron 2 of 13) intron (NM_177290, intron 2 of 13) 33470 NM_177290 320910 Mm.217000 NM_177290 ENSMUSG00000025321 Itgb8 4832412O06Rik integrin beta 8 protein-coding 0.015000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3611 chr9 92440590 92440790 + -1.09462 NA Intergenic MER2|DNA|TcMar-Tigger -16688 NM_178711 235527 Mm.55289 NM_178711 ENSMUSG00000032377 Plscr4 AV245873 phospholipid scramblase 4 protein-coding 0.005000 0.248756 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2285 chr3 61012946 61013146 + -1.09462 NA Intergenic Intergenic 10261 NM_008772 18441 Mm.281452 NM_008772 ENSMUSG00000027765 P2ry1 P2Y1 purinergic receptor P2Y, G-protein coupled 1 protein-coding 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-184 chr1 107897983 107898183 + -1.09462 NA Intergenic Intergenic -19176 NR_102306 319596 Mm.136054 NR_102306 ENSMUSG00000100457 D830032E09Rik - RIKEN cDNA D830032E09 gene ncRNA 0.005000 0.348259 77(ATTTTCATCAGAATTG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1632 chr17 68818746 68818946 + -1.09462 NA Intergenic Intergenic -18290 NM_001206661 622645 Mm.86422 NM_001206661 ENSMUSG00000095407 Tmem200c EG622645|Gm6338 transmembrane protein 200C protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-475 chr10 88069096 88069296 + -1.09462 NA Intergenic L1MC5|LINE|L1 -21876 NM_029971 110312 Mm.391436 NM_029971 ENSMUSG00000035383 Pmch A230109K23Rik pro-melanin-concentrating hormone protein-coding 0.015000 0.368159 -68(CTTGCATAAATCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2252 chr3 45493777 45493977 + -1.09462 NA Intergenic Intergenic -54568 NR_040594 72274 Mm.396202 NR_040594 ENSMUSG00000100799 1700027H10Rik - RIKEN cDNA 1700027H10 gene ncRNA 0.005000 0.268657 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3132 chr7 68858514 68858714 + -1.09462 NA Intergenic Intergenic -109376 NM_025549 66412 Mm.251199 NM_025549 ENSMUSG00000042659 Arrdc4 2410003C09Rik|AV216361 arrestin domain containing 4 protein-coding 0.005000 0.437811 -67(CATTAATATTCATG,+,0.00),-67(CATTAATATTCATG,-,0.00),-46(CATTAATATGTATG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-563 chr11 18981038 18981238 + -1.09462 NA intron (NM_001193271, intron 7 of 12) intron (NM_001193271, intron 7 of 12) 37831 NM_010789 17268 Mm.356578 NM_010789 ENSMUSG00000020160 Meis1 C530044H18Rik|Evi8 Meis homeobox 1 protein-coding 0.000000 0.318408 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-576 chrX 15058000 15058200 + -1.09462 NA Intergenic Lx8|LINE|L1 53389 NR_033171 67395 Mm.50369 NM_026128 ENSMUSG00000045217 Ppp1r2-ps9 4930403L05Rik protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 9 pseudo 0.000000 0.442786 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-72 chr10 88069127 88069327 + -1.09462 NA Intergenic B3|SINE|B2 -21845 NM_029971 110312 Mm.391436 NM_029971 ENSMUSG00000035383 Pmch A230109K23Rik pro-melanin-concentrating hormone protein-coding 0.015000 0.422886 -99(CTTGCATAAATCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1901 chr19 45431076 45431276 + -1.09462 NA intron (NM_001360127, intron 2 of 13) intron (NM_001360127, intron 2 of 13) 67442 NM_001286466 12234 Mm.119717 NM_009771 ENSMUSG00000025217 Btrc Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP beta-transducin repeat containing protein protein-coding 0.010000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-615 chr11 48645412 48645612 + -1.09462 NA Intergenic L1MB4|LINE|L1 -154848 NM_008143 14694 Mm.5305 NM_008143 ENSMUSG00000020372 Rack1 AL033335|GB-like|Gnb2-rs1|Gnb2l1|p205 receptor for activated C kinase 1 protein-coding 0.010000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1810 chr18 80427772 80427972 + -1.09462 NA intron (NM_026295, intron 11 of 12) intron (NM_026295, intron 11 of 12) 41820 NM_026295 67655 Mm.312893 NM_026295 ENSMUSG00000033323 Ctdp1 4930563P03Rik|AW553592 CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) phosphatase, subunit 1 protein-coding 0.005000 0.472637 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-70 chr10 84318129 84318329 + -1.09462 NA Intergenic Intergenic 122439 NM_001004363 77976 Mm.25874 NM_001004363 ENSMUSG00000020032 Nuak1 AU014801|AW494241|B230104P22Rik|Omphk1 NUAK family, SNF1-like kinase, 1 protein-coding 0.000000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-23 chr1 107897980 107898180 + -1.09462 NA Intergenic Intergenic -19179 NR_102306 319596 Mm.136054 NR_102306 ENSMUSG00000100457 D830032E09Rik - RIKEN cDNA D830032E09 gene ncRNA 0.005000 0.353234 80(ATTTTCATCAGAATTG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3708 chrX 64240959 64241159 + -1.09692 NA Intergenic L2|LINE|L2 35847 NM_001365112 245446 Mm.101707 NM_178740 ENSMUSG00000046699 Slitrk4 6430513G13|D930039I09Rik SLIT and NTRK-like family, member 4 protein-coding 0.000000 0.283582 14(ATTTCAAAGGCAAAAT,-,0.00),50(TGATTTTTATGTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2547 chr4 34152109 34152309 + -1.09692 NA Intergenic Intergenic -102142 NM_026293 67652 Mm.55848 NM_026293 ENSMUSG00000028264 Spaca1 1700124L11Rik|4930540L03Rik sperm acrosome associated 1 protein-coding 0.015000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2086 chr2 108622897 108623097 + -1.09692 NA Intergenic Intergenic 655293 NM_029790 76894 Mm.330451 NM_029790 ENSMUSG00000057234 Mettl15 0610027B03Rik|AI303697|AW049952|Mett5d1 methyltransferase like 15 protein-coding 0.005000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3220 chr7 122951908 122952108 + -1.09692 NA Intergenic MER2|DNA|TcMar-Tigger 18451 NR_045614 73951 Mm.389936 NR_045614 4930413G21Rik - RIKEN cDNA 4930413G21 gene ncRNA 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3106 chr7 41465707 41465907 + -1.09692 NA Intergenic Intergenic -17166 NM_177764 269902 Mm.483785 NM_177764 ENSMUSG00000066537 Vmn2r57 D430014M15|EG269902 vomeronasal 2, receptor 57 protein-coding 0.000000 0.263682 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3044 chr6 104763177 104763377 + -1.09692 NA intron (NM_017383, intron 7 of 22) intron (NM_017383, intron 7 of 22) 270233 NM_017383 53870 Mm.321671 NM_017383 ENSMUSG00000030092 Cntn6 NB-3 contactin 6 protein-coding 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2087 chr2 108623049 108623249 + -1.09692 NA Intergenic Intergenic 655141 NM_029790 76894 Mm.330451 NM_029790 ENSMUSG00000057234 Mettl15 0610027B03Rik|AI303697|AW049952|Mett5d1 methyltransferase like 15 protein-coding 0.000000 0.353234 -23(GTATGCAAAATAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2819 chr5 82115659 82115859 + -1.09692 NA Intergenic Lx10|LINE|L1 8954 NR_138557 67327 Mm.87058 NR_138557 1700031L13Rik - RIKEN cDNA 1700031L13 gene ncRNA 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3170 chr7 88307481 88307681 + -1.09692 NA intron (NM_009982, intron 5 of 6) intron (NM_009982, intron 5 of 6) 29496 NM_001311790 13032 Mm.89295 NM_009982 ENSMUSG00000030560 Ctsc AI047818|CatC|DPP1|DPPI cathepsin C protein-coding 0.000000 0.358209 -95(TATGCTTATTTATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2629 chr4 85513355 85513555 + -1.09692 NA Intergenic Intergenic 307999 NM_019535 20404 Mm.143603 NM_019535 ENSMUSG00000028488 Sh3gl2 9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a SH3-domain GRB2-like 2 protein-coding 0.015000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1707 chr18 26516437 26516637 + -1.09692 NA Intergenic Intergenic -762380 NM_001362308 108013 Mm.266435 NM_133195 ENSMUSG00000024268 Celf4 A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik CUGBP, Elav-like family member 4 protein-coding 0.010000 0.437811 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-51 chr10 32087103 32087303 + -1.09692 NA intron (NM_001013411, intron 3 of 6) intron (NM_001013411, intron 3 of 6) -477478 NM_001146349 268291 Mm.295212 NM_001146349 ENSMUSG00000063760 Rnf217 AU016819|Ibrdc1 ring finger protein 217 protein-coding 0.000000 0.383085 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-482 chr6 104763156 104763356 + -1.09692 NA intron (NM_017383, intron 7 of 22) intron (NM_017383, intron 7 of 22) 270212 NM_017383 53870 Mm.321671 NM_017383 ENSMUSG00000030092 Cntn6 NB-3 contactin 6 protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-651 chr11 68769974 68770174 + -1.09692 NA intron (NM_175260, intron 13 of 40) intron (NM_175260, intron 13 of 40) 78159 NM_175260 77579 Mm.218233 NM_175260 ENSMUSG00000020900 Myh10 5730504C04Rik|9330167F11Rik|Fltn|Myhn-2|Myhn2|NMHC II-B|NMHC-B|NMHCII-B|NMMHC II-b|NMMHC-B|NMMHC-IIB|SMemb|mKIAA3005 myosin, heavy polypeptide 10, non-muscle protein-coding 0.010000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1526 chr16 78275007 78275207 + -1.09692 NA Intergenic Zaphod|DNA|hAT-Tip100 -19653 NR_045698 100503619 Mm.387531 NR_045698 ENSMUSG00000109841 E330011O21Rik - RIKEN cDNA E330011O21 gene ncRNA 0.010000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-277 chr1 167583432 167583632 + -1.09692 NA Intergenic MTD|LTR|ERVL-MaLR -14830 NM_009107 20183 Mm.3475 NM_009107 ENSMUSG00000015843 Rxrg Nr2b3 retinoid X receptor gamma protein-coding 0.010000 0.422886 52(ATTTTAATAAGAATGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3278 chr8 12109587 12109787 + -1.09692 NA Intergenic Intergenic 269166 NM_029326 75528 Mm.440342 NM_029326 ENSMUSG00000031512 Tex29 1700018L24Rik testis expressed 29 protein-coding 0.030000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-649 chr11 67820099 67820299 + -1.09692 NA Intergenic Intergenic 21928 NM_001013013 68460 Mm.22167 NM_001013013 ENSMUSG00000033044 Dhrs7c 1110001P11Rik|AI120487|SRP-35 dehydrogenase/reductase (SDR family) member 7C protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2382 chr3 109961116 109961316 + -1.09969 NA intron (NM_030699, intron 2 of 7) intron (NM_030699, intron 2 of 7) 182256 NM_133488 80883 Mm.39262 NM_030699 ENSMUSG00000059857 Ntng1 A930010C08Rik|AI853992|Lmnt1 netrin G1 protein-coding 0.005000 0.373134 -84(CCCTTGTCATGCAATG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2689 chr4 126815764 126815964 + -1.09969 NA intron (NM_001035526, intron 4 of 23) intron (NM_001035526, intron 4 of 23) 62094 NM_001355196 100317 Mm.206206 NM_133886 ENSMUSG00000028830 AU040320 A730047D20Rik|AAVR|Kiaa0319l expressed sequence AU040320 protein-coding 0.010000 0.462687 32(AACTGCAAAAGAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-890 chr13 9543073 9543273 + -1.09969 NA intron (NM_001081426, intron 5 of 36) intron (NM_001081426, intron 5 of 36) 220637 NM_001347476 66505 Mm.397307 NM_144516 ENSMUSG00000021156 Zmynd11 2210402G22Rik|BS69 zinc finger, MYND domain containing 11 protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2159 chr2 145338456 145338656 + -1.09969 NA intron (NM_053195, intron 2 of 16) MLT2B3|LTR|ERVL 95945 NM_053195 94249 Mm.217171 NM_053195 ENSMUSG00000063873 Slc24a3 NCKX3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-161 chr1 94377629 94377829 + -1.09969 NA Intergenic MIRb|SINE|MIR -325176 NM_008798 18566 Mm.5024 NM_008798 ENSMUSG00000026285 Pdcd1 Ly101|PD-1|Pdc1 programmed cell death 1 protein-coding 0.000000 0.288557 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-823 chr12 71217843 71218043 + -1.09969 NA intron (NM_001163378, intron 28 of 29) RMER1A|Other|Other 81095 NM_001163378 76967 Mm.87290 NM_029818 ENSMUSG00000034601 2700049A03Rik Ta3|Talpid3|mKIAA0586 RIKEN cDNA 2700049A03 gene protein-coding 0.015000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-179 chr1 105374194 105374394 + -1.09969 NA Intergenic ORR1A4|LTR|ERVL-MaLR -17584 NM_178779 320311 Mm.389162 NM_178779 ENSMUSG00000047496 Rnf152 A930029B02Rik ring finger protein 152 protein-coding 0.000000 0.542289 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-418 chr4 126815777 126815977 + -1.09969 NA intron (NM_001035526, intron 4 of 23) intron (NM_001035526, intron 4 of 23) 62107 NM_001355196 100317 Mm.206206 NM_133886 ENSMUSG00000028830 AU040320 A730047D20Rik|AAVR|Kiaa0319l expressed sequence AU040320 protein-coding 0.010000 0.462687 19(AACTGCAAAAGAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1300 chr15 42074042 42074242 + -1.09969 NA Intergenic Intergenic -204422 NM_175456 223513 Mm.148913 NM_175456 ENSMUSG00000042895 Abra C130068O12Rik|STARS actin-binding Rho activating protein protein-coding 0.005000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1509 chr16 67844570 67844770 + -1.09969 NA Intergenic Intergenic -223762 NM_178721 239857 Mm.394300 NM_178721 ENSMUSG00000064115 Cadm2 2900078E11Rik|9330131D06|A830029E02Rik|Igdf4d|Igsf4d|NECL3|SynCAM 2|SynCAM2 cell adhesion molecule 2 protein-coding 0.025000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2721 chr5 9447822 9448022 + -1.09969 NA intron (NM_001359884, intron 18 of 20) intron (NM_001359884, intron 18 of 20) 72218 NR_030537 100124492 NR_030537 ENSMUSG00000077896 Mir879 Mirn879|mir-879|mmu-mir-879 microRNA 879 ncRNA 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3738 chrX 133590378 133590578 + -1.09969 NA intron (NM_001105246, intron 4 of 4) intron (NM_001105246, intron 4 of 4) -97302 NR_153117 102632590 Mm.403836 NR_153117 ENSMUSG00000096978 Gm26851 - predicted gene, 26851 ncRNA 0.000000 0.407960 -82(ATTTGAAAGACAATAA,-,0.00),76(CCTCTTCCTTGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1824 chr19 4113213 4113413 + -1.10302 NA TTS (NM_001276284) TTS (NM_001276284) 8262 NM_001276284 11632 Mm.10433 NM_016666 ENSMUSG00000024847 Aip AA408703|AW476050|Ara9|D19Bwg1412e|Fkbp16|Xap2 aryl-hydrocarbon receptor-interacting protein protein-coding 0.015000 0.567164 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2482 chr3 147503415 147503615 + -1.10302 NA Intergenic Intergenic 651148 NM_001357217 70892 Mm.187793 NM_027594 ENSMUSG00000036745 Ttll7 1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7 tubulin tyrosine ligase-like family, member 7 protein-coding 0.015000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2734 chr5 17439751 17439951 + -1.10302 NA Intergenic Intergenic -36271 NM_027609 70935 Mm.332225 NM_027609 ENSMUSG00000058643 Speer4f1 4922502J04Rik|SPEER-4F|Speer4f spermatogenesis associated glutamate (E)-rich protein 4F1 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2593 chr4 66311028 66311228 + -1.10302 NA intron (NM_207109, intron 1 of 22) intron (NM_207109, intron 1 of 22) 93355 NM_019514 56079 Mm.445312 NM_019514 ENSMUSG00000028373 Astn2 1d8|Astnl|bM452J22.1 astrotactin 2 protein-coding 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3630 chr9 102511564 102511764 + -1.10302 NA intron (NM_024291, intron 2 of 10) intron (NM_024291, intron 2 of 10) 5526 NM_024291 16716 Mm.101692 NM_024291 ENSMUSG00000035606 Ky CD1|D9Mgc44e|ky kyphoscoliosis peptidase protein-coding 0.020000 0.572139 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1735 chr18 37189101 37189301 + -1.10302 NA TTS (NM_007767) TTS (NM_007767) 45523 NM_001003672 353237 Mm.308500 NM_001003672 ENSMUSG00000102697 Pcdhac2 CNRc2 protocadherin alpha subfamily C, 2 protein-coding 0.020000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1708 chr18 26690975 26691175 + -1.10302 NA Intergenic (CATA)n|Simple_repeat|Simple_repeat -936918 NM_001362308 108013 Mm.266435 NM_133195 ENSMUSG00000024268 Celf4 A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik CUGBP, Elav-like family member 4 protein-coding 0.000000 0.343284 1(CATACATATGCAGA,+,0.00),1(CATACATATGCAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-637 chr11 63441926 63442126 + -1.10302 NA Intergenic Intergenic 309223 NM_001302260 18858 Mm.1237 NM_008885 ENSMUSG00000018217 Pmp22 22kDa|Gas-3|HNPP|TRE002|Tr|trembler peripheral myelin protein 22 protein-coding 0.010000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2546 chr4 33338133 33338333 + -1.10302 NA intron (NM_001305273, intron 7 of 15) intron (NM_001305273, intron 7 of 15) 27922 NM_001305273 24018 Mm.240024 NM_011884 ENSMUSG00000028274 Rngtt AU020997|HCE|MCE1 RNA guanylyltransferase and 5'-phosphatase protein-coding 0.005000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3214 chr7 117332839 117333039 + -1.10302 NA Intergenic L1ME3G|LINE|L1 -48040 NM_175645 233781 Mm.461427 NM_175645 ENSMUSG00000030657 Xylt1 8030490L12 xylosyltransferase 1 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-319 chr1 192352043 192352243 + -1.10302 NA intron (NM_001038607, intron 7 of 10) ORR1A3|LTR|ERVL-MaLR 161366 NM_001038607 16510 Mm.4489 NM_010600 ENSMUSG00000058248 Kcnh1 EAG1|Kv10.1|M-eag potassium voltage-gated channel, subfamily H (eag-related), member 1 protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1783 chr18 61910180 61910380 + -1.10302 NA intron (NM_198649, intron 1 of 22) intron (NM_198649, intron 1 of 22) 1544 NM_198649 319713 Mm.329478 NM_198649 ENSMUSG00000032735 Ablim3 AW990719|D930036B08Rik actin binding LIM protein family, member 3 protein-coding 0.030000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2350 chr3 95054567 95054767 + -1.10302 NA Intergenic MLTR18D_MM|LTR|ERVK -12053 NM_001282017 19185 Mm.2261 NM_008951 ENSMUSG00000005625 Psmd4 Af1|Mcb1|angiocidin proteasome (prosome, macropain) 26S subunit, non-ATPase, 4 protein-coding 0.015000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-28 chr1 22979697 22979897 + -1.10302 NA Intergenic Intergenic 81410 NR_151543 665725 Mm.416993 NR_151543 Gm7759 EG665725 predicted gene 7759 ncRNA 0.000000 0.393035 -7(AATAAATATTCATA,+,0.00),-7(AATAAATATTCATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-357 chr10 20268842 20269042 + -1.10302 NA intron (NM_001358787, intron 10 of 17) intron (NM_001358787, intron 10 of 17) 28746 NR_105840 102466647 NR_105840 ENSMUSG00000098887 Mir6413 Gm27432|mmu-mir-6413 microRNA 6413 ncRNA 0.020000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1797 chr18 72285518 72285718 + -1.10302 NA intron (NM_007831, intron 1 of 28) intron (NM_007831, intron 1 of 28) 65451 NM_007831 13176 Mm.167882 NM_007831 ENSMUSG00000060534 Dcc C030036D22Rik|Igdcc1 deleted in colorectal carcinoma protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1870 chr19 30919594 30919794 + -1.10302 NA intron (NM_001013833, intron 4 of 17) intron (NM_001013833, intron 4 of 17) 11268 NR_033643 625995 Mm.454508 NR_033643 Gm6642 EG625995 ubiquitin-like 5 pseudogene pseudo 0.005000 0.432836 -28(TTTTTGTGAGGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1057 chr14 9191401 9191601 + -1.10302 NA Intergenic Intergenic 525111 NR_045968 74859 Mm.84041 NR_045968 ENSMUSG00000097898 4930455B14Rik 1700027C12Rik RIKEN cDNA 4930455B14 gene ncRNA 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-311 chr1 187329378 187329578 + -1.10302 NA intron (NM_001357645, intron 8 of 9) intron (NM_001357645, intron 8 of 9) 113735 NM_001357645 67769 Mm.138321 NM_026367 ENSMUSG00000039210 Gpatch2 5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2 G patch domain containing 2 protein-coding 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3189 chr7 100350558 100350758 + -1.10302 NA intron (NM_028292, intron 3 of 13) intron (NM_028292, intron 3 of 13) 21238 NM_028292 72590 Mm.177502 NM_028292 ENSMUSG00000030718 Ppme1 1110069N17Rik|2700017M01Rik|PME-1|Pme1 protein phosphatase methylesterase 1 protein-coding 0.005000 0.363184 58(ATCTAAATAAAAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3089 chr6 147140831 147141031 + -1.10520 NA Intergenic Intergenic -39310 NR_033640 100039641 Mm.170402 NR_033640 ENSMUSG00000085600 E330012B07Rik Gm15768 RIKEN cDNA E330012B07 gene ncRNA 0.010000 0.402985 44(TTATGAAAGACAAAAC,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-283 chr18 61609776 61609976 + -1.10523 NA Intergenic Intergenic -29777 NR_045420 545261 Mm.426593 NR_045420 ENSMUSG00000098098 Bvht Braveheart|Gm20748 braveheart long non-coding RNA ncRNA 0.020000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1782 chr18 61609772 61609972 + -1.10523 NA Intergenic Intergenic -29781 NR_045420 545261 Mm.426593 NR_045420 ENSMUSG00000098098 Bvht Braveheart|Gm20748 braveheart long non-coding RNA ncRNA 0.020000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2089 chr2 109810526 109810726 + -1.10523 NA Intergenic Intergenic -80252 NM_011699 22343 Mm.235300 NM_011699 ENSMUSG00000027162 Lin7c 9130007B12Rik|AI303698|AU019331|AW125731|D2Ertd520e|LIN-7-C|LIN-7C|MALS-3|Veli3 lin-7 homolog C (C. elegans) protein-coding 0.005000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-36 chr1 27529597 27529797 + -1.10543 NA Intergenic Intergenic -354349 NR_151583 433281 Mm.329306 NR_151583 ENSMUSG00000101514 Gm5524 AI875557|EG433281 predicted gene 5524 ncRNA 0.010000 0.343284 28(TTTCTGTTATGTAAAG,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-55 chr10 44755327 44755527 + -1.10561 NA Intergenic Intergenic -296679 NM_007548 12142 Mm.4800 NM_007548 ENSMUSG00000038151 Prdm1 Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo PR domain containing 1, with ZNF domain protein-coding 0.010000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-257 chr17 70547176 70547376 + -1.10584 NA intron (NM_001347414, intron 1 of 10) L1MA5|LINE|L1 -14471 NM_001128181 224997 Mm.311840 NM_027712 ENSMUSG00000003279 Dlgap1 4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162 DLG associated protein 1 protein-coding 0.005000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-107 chr11 105508038 105508238 + -1.10584 NA Intergenic Intergenic -51403 NM_172568 632687 Mm.121570 NM_172568 ENSMUSG00000078627 March10 4933417C16Rik|AV039223|Rnf190 membrane-associated ring finger (C3HC4) 10 protein-coding 0.005000 0.402985 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-369 chr3 93568746 93568946 + -1.10584 NA Intergenic Intergenic 13729 NM_009112 20194 Mm.1 NM_009112 ENSMUSG00000041959 S100a10 42C|AA409961|AL024248|CAL12|CLP11|Cal1l|p10|p11 S100 calcium binding protein A10 (calpactin) protein-coding 0.000000 0.462687 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-132 chr13 19163569 19163769 + -1.10584 NA Intergenic Lx9|LINE|L1 215318 NM_175007 218038 Mm.101650 NM_175007 ENSMUSG00000021314 Amph - amphiphysin protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-912 chr13 19163533 19163733 + -1.10584 NA Intergenic Lx9|LINE|L1 215282 NM_175007 218038 Mm.101650 NM_175007 ENSMUSG00000021314 Amph - amphiphysin protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1637 chr17 70547199 70547399 + -1.10584 NA intron (NM_001347414, intron 1 of 10) L1MA5|LINE|L1 -14448 NM_001128181 224997 Mm.311840 NM_027712 ENSMUSG00000003279 Dlgap1 4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162 DLG associated protein 1 protein-coding 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1776 chr18 58517891 58518091 + -1.10614 NA Intergenic Intergenic -38249 NM_001081072 225579 Mm.258517 NM_001081072 ENSMUSG00000024600 Slc27a6 4732438L20Rik|FACVL2|FATP6|VLCS-H1 solute carrier family 27 (fatty acid transporter), member 6 protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1540 chr16 85423179 85423379 + -1.10614 NA Intergenic Intergenic 127094 NM_144853 224405 Mm.213203 NM_144853 ENSMUSG00000041134 Cyyr1 - cysteine and tyrosine-rich protein 1 protein-coding 0.010000 0.412935 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-162 chr14 24468968 24469168 + -1.10614 NA intron (NM_001081247, intron 15 of 30) intron (NM_001081247, intron 15 of 30) 17990 NM_001081247 218832 Mm.343610 NM_183157 ENSMUSG00000025280 Polr3a 9330175N20Rik|BC053071|RPC1|RPC155 polymerase (RNA) III (DNA directed) polypeptide A protein-coding 0.010000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-230 chr16 66852191 66852391 + -1.10651 NA intron (NM_001145977, intron 2 of 8) intron (NM_001145977, intron 2 of 8) 195173 NR_040512 75501 Mm.394300 NR_040512 ENSMUSG00000092599 1700010K23Rik - RIKEN cDNA 1700010K23 gene ncRNA 0.000000 0.343284 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-153 chr13 101109622 101109822 + -1.10695 NA Intergenic Intergenic -122405 NR_046158 328324 Mm.402274 NR_046158 ENSMUSG00000114590 5930438M14Rik 5930438M14 RIKEN cDNA 5930438M14 gene ncRNA 0.005000 0.338308 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-294 chr19 33148537 33148737 + -1.10695 NA intron (NR_160911, intron 6 of 6) intron (NR_160911, intron 6 of 6) -8475 NR_039552 100628575 NR_039552 ENSMUSG00000106278 Mir3970 mmu-mir-3970|mu-mir-3970 microRNA 3970 ncRNA 0.010000 0.457711 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-7 chr1 31227960 31228160 + -1.10695 NA Intergenic Intergenic 5221 NM_029062 74708 Mm.246796 NM_029062 ENSMUSG00000026063 Pih1d3 4930521A18Rik PIH1 domain containing 3 protein-coding 0.020000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3392 chr8 82329356 82329556 + -1.10703 NA Intergenic Intergenic 73130 NM_001254747 16168 Mm.4392 NM_008357 ENSMUSG00000031712 Il15 AI503618|IL-15 interleukin 15 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2125 chr2 129587890 129588090 + -1.10703 NA Intergenic Intergenic -4849 NM_001355158 19261 Mm.1682 NM_007547 ENSMUSG00000037902 Sirpa AI835480|Bit|CD172a|P84|Ptpns1|SHP-1|SHPS-1|SIRP signal-regulatory protein alpha protein-coding 0.010000 0.547264 -92(CTTTTGTTATTCATAG,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-103 chr11 80873086 80873286 + -1.10703 NA Intergenic Intergenic 14797 NM_029367 75622 Mm.26988 NM_029367 ENSMUSG00000053184 Spaca3 1700025M08Rik|ALLP17|Lyc3|SLLP1|mSLLP1 sperm acrosome associated 3 protein-coding 0.015000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-8 chr1 9682503 9682703 + -1.10703 NA intron (NM_008651, intron 7 of 15) intron (NM_008651, intron 7 of 15) 17606 NM_001290397 17864 Mm.479 NM_008651 ENSMUSG00000025912 Mybl1 A-myb|G1-419-6|repro9 myeloblastosis oncogene-like 1 protein-coding 0.000000 0.263682 32(CTTTTATTTTTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2962 chr6 39567672 39567872 + -1.10703 NA Intergenic Intergenic -6104 NM_178873 57869 Mm.247957 NM_178873 ENSMUSG00000046947 Adck2 AA408112|BB006057 aarF domain containing kinase 2 protein-coding 0.020000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2812 chr5 78933301 78933501 + -1.10703 NA Intergenic RLTR22_Mur|LTR|ERVK 1467913 NR_131050 69370 Mm.426881 NR_131050 ENSMUSG00000107232 1700017L05Rik - RIKEN cDNA 1700017L05 gene ncRNA 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3456 chr8 121451448 121451648 + -1.10703 NA Intergenic Intergenic 90406 NM_001357259 76405 Mm.165697 NM_029597 ENSMUSG00000031809 1700018B08Rik 1700084O22Rik RIKEN cDNA 1700018B08 gene protein-coding 0.025000 0.597015 3(CTATTTTGATTCATAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-401 chr4 54705618 54705818 + -1.10703 NA Intergenic L1ME3Cz|LINE|L1 -242227 NM_172867 242466 Mm.102904 NM_172867 ENSMUSG00000060206 Zfp462 6030417H05|9430078C22Rik|Gt4-2|Zfpip|Znf462 zinc finger protein 462 protein-coding 0.000000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-31 chr1 170393059 170393259 + -1.10703 NA intron (NR_154593, intron 2 of 9) intron (NR_154593, intron 2 of 9) 84340 NM_001039593 76925 Mm.33631 NM_001039593 ENSMUSG00000042800 Spata46 1700015E13Rik spermatogenesis associated 46 protein-coding 0.025000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-554 chr11 13191939 13192139 + -1.10703 NA Intergenic L1_Mus3|LINE|L1 -727079 NM_172496 12808 Mm.22847 NM_172496 ENSMUSG00000020173 Cobl - cordon-bleu WH2 repeat protein-coding 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1216 chr14 117203990 117204190 + -1.10703 NA intron (NM_001079844, intron 2 of 9) intron (NM_001079844, intron 2 of 9) 278793 NM_011821 23888 Mm.440025 NM_011821 ENSMUSG00000058571 Gpc6 - glypican 6 protein-coding 0.000000 0.338308 45(TCCTTTTCATGTTAAG,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-295 chr19 37673517 37673717 + -1.10703 NA intron (NM_175353, intron 20 of 21) intron (NM_175353, intron 20 of 21) -12063 NM_001105201 546726 Mm.457750 NM_001105201 ENSMUSG00000062432 Cyp26c1 EG546726 cytochrome P450, family 26, subfamily c, polypeptide 1 protein-coding 0.035000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3063 chr6 118791922 118792122 + -1.10703 NA intron (NM_001256000, intron 3 of 46) intron (NM_001256000, intron 3 of 46) -34048 NM_001290335 12288 Mm.41628 NM_009781 ENSMUSG00000051331 Cacna1c Cav1.2|Cchl1a1|D930026N18Rik|MBC|MELC-CC calcium channel, voltage-dependent, L type, alpha 1C subunit protein-coding 0.020000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-881 chr13 5916192 5916392 + -1.10703 NA Intergenic Intergenic 54803 NM_011803 23849 Mm.275036 NM_011803 ENSMUSG00000000078 Klf6 AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9 Kruppel-like factor 6 protein-coding 0.015000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1315 chr15 50267537 50267737 + -1.10703 NA Intergenic Intergenic 621412 NM_001310481 83925 Mm.30466 NM_032000 ENSMUSG00000038679 Trps1 AI115454|AI447310|D15Ertd586e transcriptional repressor GATA binding 1 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3425 chr8 103830480 103830680 + -1.10703 NA Intergenic L1ME2z|LINE|L1 226781 NR_045730 71058 Mm.67707 NR_045730 ENSMUSG00000110336 4933400L20Rik - RIKEN cDNA 4933400L20 gene ncRNA 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-310 chr1 187233820 187234020 + -1.10703 NA intron (NM_001357646, intron 5 of 7) intron (NM_001357646, intron 5 of 7) 18177 NM_001357645 67769 Mm.138321 NM_026367 ENSMUSG00000039210 Gpatch2 5830433G22Rik|5830436K05Rik|AI427714|AI447508|AW107440|AW491060|Gpatc2 G patch domain containing 2 protein-coding 0.000000 0.313433 72(ATCTTCTAATGCTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-858 chr12 100764173 100764373 + -1.10703 NA Intergenic Intergenic -14784 NM_145448 217830 Mm.218590 NM_145448 ENSMUSG00000021185 Dglucy 9030617O03Rik D-glutamate cyclase protein-coding 0.015000 0.412935 8(TTATTGTTATGTAACT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1887 chr19 37673526 37673726 + -1.10703 NA intron (NM_175353, intron 20 of 21) intron (NM_175353, intron 20 of 21) -12054 NM_001105201 546726 Mm.457750 NM_001105201 ENSMUSG00000062432 Cyp26c1 EG546726 cytochrome P450, family 26, subfamily c, polypeptide 1 protein-coding 0.035000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1597 chr17 34915516 34915716 + -1.10703 NA intron (NM_023557, intron 1 of 20) intron (NM_023557, intron 1 of 20) 1150 NM_023557 70129 Mm.183126 NM_023557 ENSMUSG00000007034 Slc44a4 2210409B01Rik|NG22|mTPPT1 solute carrier family 44, member 4 protein-coding 0.015000 0.621891 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2746 chr5 25331886 25332086 + -1.10703 NA intron (NM_001081383, intron 27 of 58) L1MA4A|LINE|L1 85613 NM_001359890 231050 Mm.246718 NM_144908 ENSMUSG00000038072 Galnt11 A430075I06Rik|AI648252|E430002F06Rik polypeptide N-acetylgalactosaminyltransferase 11 protein-coding 0.005000 0.338308 -89(GTTTAAATGAAAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-520 chr10 113839176 113839376 + -1.10703 NA Intergenic Lx5b|LINE|L1 -910250 NM_001033474 382423 Mm.431239 NM_001033474 ENSMUSG00000074748 Atxn7l3b 4921506J03Rik|6230409E21Rik|AI315132 ataxin 7-like 3B protein-coding 0.005000 0.452736 79(TATACATAATTTATT,+,0.00),79(TATACATAATTTATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2072 chr2 103625034 103625234 + -1.10749 NA intron (NM_178890, intron 1 of 16) intron (NM_178890, intron 1 of 16) 58824 NM_178890 99382 Mm.35850 NM_178890 ENSMUSG00000032724 Abtb2 AW539457|BPOZ-2 ankyrin repeat and BTB (POZ) domain containing 2 protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1938 chr2 8770055 8770255 + -1.10749 NA Intergenic Intergenic -419360 NR_038180 73438 Mm.23558 NR_038180 ENSMUSG00000085580 1700061F12Rik - RIKEN cDNA 1700061F12 gene ncRNA 0.000000 0.253731 -91(TATTTCCTATTTAAAT,+,0.00),42(TCTTGGTTATTAAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-552 chr9 20150073 20150273 + -1.10749 NA Intergenic RLTR13D3|LTR|ERVK 21053 NM_146557 258550 Mm.334988 NM_146557 ENSMUSG00000058491 Olfr869 MOR145-6 olfactory receptor 869 protein-coding 0.000000 0.378109 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-15 chr1 72418591 72418791 + -1.10812 NA Intergenic Intergenic 111270 NM_009533 22596 Mm.246952 NM_009533 ENSMUSG00000026187 Xrcc5 AI314015|CTC85|CTCBF|Ku80|Ku86 X-ray repair complementing defective repair in Chinese hamster cells 5 protein-coding 0.005000 0.363184 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-100 chr11 64916767 64916967 + -1.10887 NA Intergenic Intergenic -62168 NM_023479 68626 Mm.157711 NM_023479 ENSMUSG00000020549 Elac2 1110017O07Rik|D11Wsu80e|Hpc2 elaC ribonuclease Z 2 protein-coding 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1734 chr18 36450020 36450220 + -1.10887 NA intron (NM_026027, intron 2 of 3) intron (NM_026027, intron 2 of 3) 4375 NM_026027 67199 Mm.30184 NM_026027 ENSMUSG00000024346 Pfdn1 2700086I23Rik|AA408327|AU044714 prefoldin 1 protein-coding 0.010000 0.437811 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-80 chr10 107905575 107905775 + -1.10887 NA intron (NM_001370989, intron 3 of 57) intron (NM_001370989, intron 3 of 57) 6704 NM_001370989 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1822 chr18 88875532 88875732 + -1.10973 NA intron (NM_018821, intron 2 of 2) intron (NM_018821, intron 2 of 2) 18575 NM_018821 54607 Mm.91920 NM_018821 ENSMUSG00000056153 Socs6 1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4 suppressor of cytokine signaling 6 protein-coding 0.015000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-344 chr2 168401711 168401911 + -1.10973 NA Intergenic MTC|LTR|ERVL-MaLR -132480 NM_001081134 241794 Mm.425102 NM_001081134 ENSMUSG00000074575 Kcng1 AW536275 potassium voltage-gated channel, subfamily G, member 1 protein-coding 0.015000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3466 chr8 126453083 126453283 + -1.10973 NA intron (NM_001159907, intron 11 of 29) intron (NM_001159907, intron 11 of 29) 21882 NM_001159907 212728 Mm.482479 NM_001159907 ENSMUSG00000090290 Tarbp1 Gm17296|Gm179 TAR RNA binding protein 1 protein-coding 0.005000 0.447761 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-547 chr8 126453021 126453221 + -1.10973 NA intron (NM_001159907, intron 11 of 29) intron (NM_001159907, intron 11 of 29) 21944 NM_001159907 212728 Mm.482479 NM_001159907 ENSMUSG00000090290 Tarbp1 Gm17296|Gm179 TAR RNA binding protein 1 protein-coding 0.010000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1983 chr2 39754041 39754241 + -1.10973 NA Intergenic RLTR17|LTR|ERVK -527792 NM_024209 67857 Mm.389242 NM_024209 ENSMUSG00000026753 Ppp6c 2310003C10Rik|Pp6C protein phosphatase 6, catalytic subunit protein-coding 0.005000 0.442786 -61(TATTTTTTATGTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2192 chr2 168401678 168401878 + -1.10973 NA Intergenic MTC|LTR|ERVL-MaLR -132447 NM_001081134 241794 Mm.425102 NM_001081134 ENSMUSG00000074575 Kcng1 AW536275 potassium voltage-gated channel, subfamily G, member 1 protein-coding 0.015000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1027 chr13 105582512 105582712 + -1.11074 NA Intergenic L1M5|LINE|L1 138919 NM_008308 15550 Mm.4716 NM_008308 ENSMUSG00000021721 Htr1a Gpcr18 5-hydroxytryptamine (serotonin) receptor 1A protein-coding 0.005000 0.383085 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-208 chr15 55049184 55049384 + -1.11074 NA intron (NM_001081288, intron 12 of 25) intron (NM_001081288, intron 12 of 25) 22868 NM_001081288 319944 Mm.380957 NM_177040 ENSMUSG00000037343 Taf2 4732460C16Rik|AI425886|CIF150|TAF2B|TAFII-150|TAFII150 TATA-box binding protein associated factor 2 protein-coding 0.025000 0.427861 -52(AATACATAATTCAAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1142 chr14 68822499 68822699 + -1.11074 NA Intergenic MIR3|SINE|MIR -166757 NM_183366 13522 Mm.117450 NM_010082 ENSMUSG00000014725 Adam28 C130072N01Rik|D430033C21Rik|Dtgn1|MDC-L|MDCL|TECADAM|eMDCII a disintegrin and metallopeptidase domain 28 protein-coding 0.000000 0.368159 -7(ATATTCATGACAAGGT,-,0.00),59(ATTTGAATGAATGTGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1329 chr15 55049199 55049399 + -1.11074 NA intron (NM_001081288, intron 12 of 25) intron (NM_001081288, intron 12 of 25) 22853 NM_001081288 319944 Mm.380957 NM_177040 ENSMUSG00000037343 Taf2 4732460C16Rik|AI425886|CIF150|TAF2B|TAFII-150|TAFII150 TATA-box binding protein associated factor 2 protein-coding 0.020000 0.422886 -67(AATACATAATTCAAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1932 chr2 5770653 5770853 + -1.11189 NA Intergenic Intergenic -55991 NM_001290374 227541 Mm.191949 NM_177343 ENSMUSG00000039145 Camk1d A630059D12Rik|CKLiK|CaMKIdelta|E030025C11Rik|mCKLiK calcium/calmodulin-dependent protein kinase ID protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3517 chr9 34557948 34558148 + -1.11189 NA intron (NM_001190912, intron 1 of 15) intron (NM_001190912, intron 1 of 15) 69317 NM_001190912 67703 Mm.220710 NM_026324 ENSMUSG00000032036 Kirrel3 1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867 kirre like nephrin family adhesion molecule 3 protein-coding 0.015000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-611 chr11 46073216 46073416 + -1.11189 NA intron (NM_001291890, intron 3 of 22) intron (NM_001291890, intron 3 of 22) 17332 NM_009616 11492 Mm.89940 NM_009616 ENSMUSG00000011256 Adam19 AL024287|MADDAM|MTLNB|Mltnb a disintegrin and metallopeptidase domain 19 (meltrin beta) protein-coding 0.035000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-604 chr11 42314884 42315084 + -1.11189 NA exon (NM_008068, exon 8 of 9) exon (NM_008068, exon 8 of 9) 6088 NM_008068 14399 Mm.4915 NM_008068 ENSMUSG00000020428 Gabra6 GABA-ARalpha6|Gabra-6|alpha6 gamma-aminobutyric acid (GABA) A receptor, subunit alpha 6 protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1040 chr13 113970079 113970279 + -1.11189 NA intron (NM_172595, intron 4 of 4) intron (NM_172595, intron 4 of 4) 175671 NM_172595 218639 Mm.79837 NM_172595 ENSMUSG00000042348 Arl15 A430036I03|Arfrp2|C230032K13Rik ADP-ribosylation factor-like 15 protein-coding 0.010000 0.368159 -41(CTCTTAATGACAAAGA,-,0.00),53(ATTAGCATAAAAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-291 chr1 176353295 176353495 + -1.11189 NA Intergenic Intergenic -78083 NM_001357846 319455 Mm.338001 NM_176916 ENSMUSG00000055214 Pld5 B230365F16Rik phospholipase D family, member 5 protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1968 chr2 25975182 25975382 + -1.11189 NA intron (NM_001276361, intron 1 of 17) L1ME3B|LINE|L1 8000 NM_001276361 227634 Mm.36834 NM_001115076 ENSMUSG00000026933 Camsap1 9530003A05Rik|C77823|PRO2405 calmodulin regulated spectrin-associated protein 1 protein-coding 0.005000 0.402985 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-64 chr10 68617680 68617880 + -1.11189 NA Intergenic Intergenic -75905 NM_028491 73287 Mm.141830 NM_028491 ENSMUSG00000019945 Cabcoco1 1700040L02Rik ciliary associated calcium binding coiled-coil 1 protein-coding 0.010000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2388 chr3 114218038 114218238 + -1.11189 NA intron (NM_007729, intron 66 of 66) intron (NM_007729, intron 66 of 66) 187598 NM_007729 12814 Mm.209715 NM_007729 ENSMUSG00000027966 Col11a1 C530001D20Rik|cho collagen, type XI, alpha 1 protein-coding 0.010000 0.417910 -25(CTTTGAATAACAAACA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2640 chr4 91995074 91995274 + -1.11189 NA Intergenic L1_Mur2|LINE|L1 152047 NM_027034 69314 Mm.55891 NM_027034 ENSMUSG00000028533 Izumo3 1700011H22Rik IZUMO family member 3 protein-coding 0.005000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3556 chr9 63059154 63059354 + -1.11189 NA Intergenic Intergenic -78375 NM_019663 56469 Mm.431253 NM_019663 ENSMUSG00000032405 Pias1 2900068C24Rik|Ddxbp1|GBP protein inhibitor of activated STAT 1 protein-coding 0.025000 0.577114 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-452 chr10 75230140 75230340 + -1.11189 NA intron (NM_001145826, intron 4 of 18) ORR1D-int|LTR|ERVL-MaLR 17850 NM_001145826 74392 Mm.27716 NM_153406 ENSMUSG00000033444 Specc1l 4930470P14Rik|4932439K10Rik|9530057A13Rik|AI317249|Cytsa|mKIAA0376 sperm antigen with calponin homology and coiled-coil domains 1-like protein-coding 0.015000 0.567164 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2044 chr2 79124417 79124617 + -1.11189 NA Intergenic Intergenic -130909 NM_010576 16401 Mm.31903 NM_010576 ENSMUSG00000027009 Itga4 CD49D|Itga4B integrin alpha 4 protein-coding 0.015000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-360 chr10 21959273 21959473 + -1.11189 NA intron (NM_001161845, intron 2 of 13) intron (NM_001161845, intron 2 of 13) -19299 NM_001161847 20393 Mm.28405 NM_011361 ENSMUSG00000019970 Sgk1 Sgk serum/glucocorticoid regulated kinase 1 protein-coding 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-442 chr10 68617606 68617806 + -1.11189 NA Intergenic Intergenic -75831 NM_028491 73287 Mm.141830 NM_028491 ENSMUSG00000019945 Cabcoco1 1700040L02Rik ciliary associated calcium binding coiled-coil 1 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2514 chr4 9290782 9290982 + -1.11189 NA intron (NM_001355183, intron 2 of 5) intron (NM_001355183, intron 2 of 5) 21565 NM_028940 74438 Mm.473368 NM_028940 ENSMUSG00000041216 Clvs1 4933402J24Rik|Clvl1|Rlbp1l1 clavesin 1 protein-coding 0.005000 0.383085 -86(GCTTAGTCATGTTGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1270 chr15 22778030 22778230 + -1.11189 NA Intergenic Intergenic -63146 NM_001165971 545091 Mm.475598 NM_001165971 Hnrnpa1l2-ps2 EG545091|Gm5803 heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2 protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1563 chr16 97343659 97343859 + -1.11189 NA Intergenic Intergenic -12969 NM_019517 56175 Mm.97885 NM_019517 ENSMUSG00000040605 Bace2 1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP beta-site APP-cleaving enzyme 2 protein-coding 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2513 chr4 9173211 9173411 + -1.11189 NA Intergenic RLTR40|LTR|ERVK -95982 NM_001355183 74438 Mm.473368 NM_028940 ENSMUSG00000041216 Clvs1 4933402J24Rik|Clvl1|Rlbp1l1 clavesin 1 protein-coding 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-437 chr10 63909049 63909249 + -1.11189 NA intron (NM_177612, intron 7 of 17) intron (NM_177612, intron 7 of 17) 88094 NM_001164519 216033 Mm.444692 NM_177612 ENSMUSG00000060843 Ctnna3 4930429L08Rik|4933408A16|Catna3|Vr22 catenin (cadherin associated protein), alpha 3 protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1110 chr14 47181575 47181775 + -1.11189 NA intron (NM_008102, intron 1 of 5) intron (NM_008102, intron 1 of 5) 7738 NM_008102 14528 Mm.10651 NM_008102 ENSMUSG00000037580 Gch1 GTP-CH|GTP-CH-I|GTPCH|Gch GTP cyclohydrolase 1 protein-coding 0.020000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3412 chr8 95817657 95817857 + -1.11189 NA intron (NR_015574, intron 3 of 3) intron (NR_015574, intron 3 of 3) -10295 NM_153164 234594 Mm.259220 NM_153164 ENSMUSG00000036550 Cnot1 6030411K04Rik|AA815922|D830048B13 CCR4-NOT transcription complex, subunit 1 protein-coding 0.005000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1608 chr17 49118753 49118953 + -1.11189 NA Intergenic L1MC4|LINE|L1 -5320 NR_038144 69311 Mm.46140 NR_038141 ENSMUSG00000101012 1700008K24Rik - RIKEN cDNA 1700008K24 gene ncRNA 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2241 chr3 33081136 33081336 + -1.11189 NA intron (NM_021483, intron 2 of 14) intron (NM_021483, intron 2 of 14) 1824 NM_001289505 58869 Mm.151332 NM_021483 ENSMUSG00000027674 Pex5l 1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp peroxisomal biogenesis factor 5-like protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3710 chrX 70169983 70170183 + -1.11189 NA Intergenic Intergenic -26495 NR_033213 74305 Mm.410860 NR_033213 ENSMUSG00000100511 1700111N16Rik - RIKEN cDNA 1700111N16 gene ncRNA 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1919 chr19 54564316 54564516 + -1.11189 NA Intergenic Intergenic 519157 NM_007417 11551 Mm.235195 NM_007417 ENSMUSG00000033717 Adra2a AW122659|Adra-2|Adra-2a|alpha(2A)AR|alpha2-C10|alpha2A|alpha2A-AR adrenergic receptor, alpha 2a protein-coding 0.010000 0.303483 -66(ACTTTCTTATTTAAAA,+,0.00),-32(TCATTGTAATGGTAAT,+,0.00),16(ATCAGCAAGATAATTC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3500 chr9 24464043 24464243 + -1.11189 NA intron (NM_001359948, intron 6 of 22) intron (NM_001359948, intron 6 of 22) 38997 NM_172920 244745 Mm.38526 NM_172920 ENSMUSG00000043067 Dpy19l1 1100001I19Rik|6030402K12|AI225861|AW558481 dpy-19-like 1 (C. elegans) protein-coding 0.000000 0.363184 -17(CTTTTCATCAGAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-78 chr1 52763714 52763914 + -1.11189 NA Intergenic Intergenic -36456 NM_001357464 98682 Mm.491173 NM_133829 ENSMUSG00000041439 Mfsd6 2210010L05Rik|9630025I22Rik|AI836200|AW212394|MMR2 major facilitator superfamily domain containing 6 protein-coding 0.005000 0.258706 67(TATACATTATATATG,-,0.00) 9(TGTGAATATGTATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3046 chr6 104989339 104989539 + -1.11189 NA Intergenic MTB_Mm|LTR|ERVL-MaLR 496395 NM_017383 53870 Mm.321671 NM_017383 ENSMUSG00000030092 Cntn6 NB-3 contactin 6 protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-932 chr13 32490249 32490449 + -1.11189 NA Intergenic MER110|LTR|ERV1 -151805 NM_146041 218138 Mm.247143 NM_146041 ENSMUSG00000038372 Gmds BC031788|C87208 GDP-mannose 4, 6-dehydratase protein-coding 0.010000 0.402985 19(TCTTTCTTATTGTTAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2767 chr5 43102973 43103173 + -1.11190 NA Intergenic Intergenic -130180 NM_001177379 231207 Mm.7233 NM_175937 ENSMUSG00000039782 Cpeb2 A630055H10Rik|Cpe-bp2 cytoplasmic polyadenylation element binding protein 2 protein-coding 0.020000 0.402985 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-223 chr16 47505293 47505493 + -1.11190 NA Intergenic MTD|LTR|ERVL-MaLR 653106 NR_152166 619300 Mm.384092 NR_152166 6430553K19Rik - RIKEN cDNA 6430553K19 gene ncRNA 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2932 chr6 17764063 17764263 + -1.11324 NA intron (NM_001083315, intron 1 of 14) intron (NM_001083315, intron 1 of 14) 14993 NM_001083315 64213 Mm.12051 NM_022332 ENSMUSG00000029534 St7 9430001H04Rik|Fam4a2|HELG|RAY1|SEN4|TSG7 suppression of tumorigenicity 7 protein-coding 0.010000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-9 chr1 33148920 33149120 + -1.11324 NA Intergenic Intergenic 520774 NM_008922 19076 Mm.27705 NM_008922 ENSMUSG00000026134 Prim2 AI323589 DNA primase, p58 subunit protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2766 chr5 43102773 43102973 + -1.11324 NA Intergenic Intergenic -130380 NM_001177379 231207 Mm.7233 NM_175937 ENSMUSG00000039782 Cpeb2 A630055H10Rik|Cpe-bp2 cytoplasmic polyadenylation element binding protein 2 protein-coding 0.015000 0.447761 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-390 chr3 158864853 158865053 + -1.11654 NA Intergenic Intergenic -211411 NR_040750 624759 Mm.491054 NR_040750 ENSMUSG00000106053 Gm20752 - predicted gene, 20752 ncRNA 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2503 chr3 158864870 158865070 + -1.11654 NA Intergenic Intergenic -211394 NR_040750 624759 Mm.491054 NR_040750 ENSMUSG00000106053 Gm20752 - predicted gene, 20752 ncRNA 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-450 chr10 73749159 73749359 + -1.11654 NA Intergenic L1MA4|LINE|L1 -72608 NM_001142748 11994 Mm.338933 NM_023115 ENSMUSG00000052613 Pcdh15 BB078305|Gm9815|Ush1f|av|nmf19|roda protocadherin 15 protein-coding 0.010000 0.422886 -70(GTAAACATGACAAAGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2627 chr4 83882034 83882234 + -1.11654 NA Intergenic ORR1F|LTR|ERVL-MaLR 162745 NR_130998 78238 Mm.243903 NR_130998 ENSMUSG00000085217 6030471H07Rik - RIKEN cDNA 6030471H07 gene ncRNA 0.010000 0.402985 -89(ATTAGCAACAAAAGGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3184 chr7 95141460 95141660 + -1.11654 NA Intergenic Intergenic -1029684 NM_001310762 23966 Mm.254610 NM_011858 ENSMUSG00000048078 Tenm4 Doc4|ELM2|Odz4|R75022|Ten-m4|l(7)-3Rn|l7Rn3|mKIAA1302 teneurin transmembrane protein 4 protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3514 chr9 32824087 32824287 + -1.11654 NA Intergenic Intergenic 104779 NR_131058 330917 Mm.488283 NR_131058 Gm27162 A430016B06 predicted gene 27162 ncRNA 0.010000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2042 chr2 75200434 75200634 + -1.11654 NA Intergenic Intergenic 243645 NR_040635 77269 Mm.389278 NR_040635 9430019J16Rik - RIKEN cDNA 9430019J16 gene ncRNA 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2414 chr3 122008859 122009059 + -1.11778 NA intron (NM_172525, intron 19 of 22) intron (NM_172525, intron 19 of 22) -35501 NM_007378 11304 Mm.3918 NM_007378 ENSMUSG00000028125 Abca4 AW050280|Abc10|Abcr|D430003I15Rik|RmP ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2834 chr5 89851851 89852051 + -1.11778 NA intron (NM_001081401, intron 3 of 21) Lx9|LINE|L1 31383 NM_177872 330119 Mm.133062 NM_177872 ENSMUSG00000043635 Adamts3 1100001H14Rik|6330442E02Rik a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3 protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-458 chr10 79300533 79300733 + -1.11778 NA Intergenic L1_Mus1|LINE|L1 52856 NM_175936 216144 Mm.246574 NM_175936 ENSMUSG00000055515 Vmn2r81 EC1-V2R|EC1-VR2|V2rf2 vomeronasal 2, receptor 81 protein-coding 0.000000 0.328358 -54(TATGAATAAAGTATG,+,0.00),-54(TATGAATAAAGTATG,-,0.00) 2(CTTGTGTTTTGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2240 chr3 32924573 32924773 + -1.11778 NA intron (NM_001013024, intron 19 of 20) intron (NM_001013024, intron 19 of 20) 60406 NM_001163517 58869 Mm.151332 NM_021483 ENSMUSG00000027674 Pex5l 1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp peroxisomal biogenesis factor 5-like protein-coding 0.010000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-332 chr10 6692579 6692779 + -1.11778 NA Intergenic Intergenic -65914 NM_001302796 18390 Mm.438000 NM_011013 ENSMUSG00000000766 Oprm1 M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR opioid receptor, mu 1 protein-coding 0.000000 0.437811 -40(TTTTTTTTATAGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3366 chr8 68625900 68626100 + -1.11778 NA intron (NM_172753, intron 2 of 9) intron (NM_172753, intron 2 of 9) 109085 NM_001364256 234356 Mm.334569 NM_172753 ENSMUSG00000036356 Csgalnact1 4732435N03Rik|CSGalNAcT-1 chondroitin sulfate N-acetylgalactosaminyltransferase 1 protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3650 chr9 114673340 114673540 + -1.11778 NA Intergenic MTD|LTR|ERVL-MaLR -15391 NM_146229 235661 Mm.128627 NM_146229 ENSMUSG00000032435 Dync1li1 1110053F02Rik|Dnclic1|LIC-1 dynein cytoplasmic 1 light intermediate chain 1 protein-coding 0.010000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-942 chr13 37927005 37927205 + -1.11778 NA intron (NR_033615, intron 8 of 9) intron (NR_033615, intron 8 of 9) 38234 NM_001177869 68750 Mm.491109 NM_026830 ENSMUSG00000039087 Rreb1 1110037N09Rik|AA414966|B930013M22Rik ras responsive element binding protein 1 protein-coding 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3604 chr9 90691916 90692116 + -1.11778 NA Intergenic Intergenic -421247 NM_194334 67016 Mm.335347 NM_194334 ENSMUSG00000037410 Tbc1d2b 1810061M12Rik|AI480956|AV021536|AV023399|AW491493|mKIAA1055 TBC1 domain family, member 2B protein-coding 0.020000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-814 chr12 68255272 68255472 + -1.11778 NA Intergenic L1MEg|LINE|L1 903814 NM_009093 20090 Mm.379006 NM_009093 ENSMUSG00000034892 Rps29 - ribosomal protein S29 protein-coding 0.010000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2658 chr4 100967942 100968142 + -1.11778 NA intron (NM_198037, intron 11 of 26) intron (NM_198037, intron 11 of 26) -100996 NM_183024 242570 Mm.185636 NM_183024 ENSMUSG00000035275 Raver2 A430091O22Rik ribonucleoprotein, PTB-binding 2 protein-coding 0.030000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1940 chr2 9141529 9141729 + -1.11778 NA Intergenic MER44B|DNA|TcMar-Tigger -47886 NR_038180 73438 Mm.23558 NR_038180 ENSMUSG00000085580 1700061F12Rik - RIKEN cDNA 1700061F12 gene ncRNA 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-807 chr12 60250770 60250970 + -1.11778 NA Intergenic Intergenic -1031387 NM_001033156 70611 Mm.311026 NM_001033156 ENSMUSG00000035329 Fbxo33 5730501N20Rik|AI642135 F-box protein 33 protein-coding 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2465 chr3 141304098 141304298 + -1.11778 NA Intergenic Intergenic -91843 NM_008811 18598 Mm.4223 NM_008811 ENSMUSG00000047674 Pdha2 Pdhal pyruvate dehydrogenase E1 alpha 2 protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1897 chr19 43906062 43906262 + -1.11778 NA intron (NM_028029, intron 3 of 15) intron (NM_028029, intron 3 of 15) -26394 NM_001306088 71972 Mm.159024 NM_028029 ENSMUSG00000025195 Dnmbp 2410003L07Rik|2410003M15Rik|TUBA dynamin binding protein protein-coding 0.010000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-165 chr1 95533365 95533565 + -1.11778 NA Intergenic Intergenic 134129 NM_009183 20452 Mm.306228 NM_009183 ENSMUSG00000040710 St8sia4 PST|PST-1|SIAT8-D|ST8SiaIV|Siat8d ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 4 protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2489 chr3 150188588 150188788 + -1.11778 NA Intergenic Intergenic 835174 NR_039540 100628568 NR_039540 ENSMUSG00000092830 Mir3963 mmu-mir-3963|mu-mir-3963 microRNA 3963 ncRNA 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3367 chr8 69012622 69012822 + -1.11778 NA Intergenic Intergenic -76014 NM_007509 11966 Mm.249096 NM_007509 ENSMUSG00000006273 Atp6v1b2 AI194269|AI790362|Atp6b2|HO57|R74844 ATPase, H+ transporting, lysosomal V1 subunit B2 protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1998 chr2 48730513 48730713 + -1.11778 NA Intergenic Intergenic -83496 NM_007396 11480 Mm.314338 NM_007396 ENSMUSG00000052155 Acvr2a ActrIIa|Acvr2|TactrII activin receptor IIA protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1055 chr14 8682713 8682913 + -1.11778 NA Intergenic L1_Mur3|LINE|L1 16423 NR_045968 74859 Mm.84041 NR_045968 ENSMUSG00000097898 4930455B14Rik 1700027C12Rik RIKEN cDNA 4930455B14 gene ncRNA 0.005000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3310 chr8 31980588 31980788 + -1.11778 NA intron (NM_001364421, intron 1 of 12) intron (NM_001364421, intron 1 of 12) 28816 NM_001364421 211323 Mm.153432 NM_178591 ENSMUSG00000062991 Nrg1 6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF neuregulin 1 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1133 chr14 65326629 65326829 + -1.11778 NA Intergenic Intergenic -31947 NM_199029 380912 Mm.270087 NM_199029 ENSMUSG00000034522 Zfp395 BC053701|Gm910 zinc finger protein 395 protein-coding 0.025000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1439 chr16 25905380 25905580 + -1.11778 NA Intergenic Intergenic 103564 NM_001127263 22061 Mm.20894 NM_011641 ENSMUSG00000022510 Trp63 AI462811|Ket|P51/P63|P63|P73l|Tp63|Trp53rp1 transformation related protein 63 protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2984 chr6 61718008 61718208 + -1.11778 NA intron (NM_183310, intron 7 of 10) intron (NM_183310, intron 7 of 10) -537298 NR_040287 100504262 Mm.438066 NR_040287 A730020E08Rik - RIKEN cDNA A730020E08 gene ncRNA 0.020000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2650 chr4 97413862 97414062 + -1.11778 NA Intergenic Intergenic -167981 NM_001122952 18027 Mm.31274 NM_010905 ENSMUSG00000028565 Nfia 1110047K16Rik|9430022M17Rik|CTF|NF1-A|NF1A nuclear factor I/A protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3705 chrX 59484698 59484898 + -1.11778 NA intron (NM_001290414, intron 2 of 6) intron (NM_001290414, intron 2 of 6) 82550 NM_001356335 14168 Mm.7995 NM_010200 ENSMUSG00000031137 Fgf13 Fhf2 fibroblast growth factor 13 protein-coding 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-947 chr13 41517292 41517492 + -1.11778 NA Intergenic Intergenic -30032 NM_001111324 18003 Mm.288980 NM_017464 ENSMUSG00000021365 Nedd9 Cas-L|CasL|HEF1|MEF1|Nedd-9|p105 neural precursor cell expressed, developmentally down-regulated gene 9 protein-coding 0.005000 0.442786 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-203 chr15 49163551 49163751 + -1.11778 NA Intergenic Intergenic -371662 NM_001081391 239420 Mm.309363 NM_001081391 ENSMUSG00000022311 Csmd3 4930500N14Rik|mKIAA1894 CUB and Sushi multiple domains 3 protein-coding 0.005000 0.323383 -11(GATTTCTCTTGTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2361 chr3 100857367 100857567 + -1.11778 NA intron (NM_178594, intron 1 of 5) intron (NM_178594, intron 1 of 5) 32008 NM_178594 242122 Mm.137467 NM_178594 ENSMUSG00000051076 Vtcn1 B7h4|B7s1|B7x|BC032925 V-set domain containing T cell activation inhibitor 1 protein-coding 0.010000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3646 chr9 111665340 111665540 + -1.11778 NA intron (NM_016853, intron 1 of 10) intron (NM_016853, intron 1 of 10) 24908 NM_001324546 20840 Mm.1414 NM_016853 ENSMUSG00000032502 Stac - src homology three (SH3) and cysteine rich domain protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2339 chr3 86396217 86396417 + -1.11778 NA intron (NM_030695, intron 35 of 56) Lx2|LINE|L1 151966 NM_011839 23937 Mm.389466 NM_011839 ENSMUSG00000057777 Mab21l2 - mab-21-like 2 protein-coding 0.020000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-7 chr1 9338994 9339194 + -1.11778 NA Intergenic Lx8|LINE|L1 -39217 NM_001290390 71096 Mm.336395 NM_027671 ENSMUSG00000025909 Sntg1 4933426D16Rik|G1SYN|SYN4 syntrophin, gamma 1 protein-coding 0.000000 0.343284 -5(TCTGCATATGGATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2340 chr3 87227392 87227592 + -1.11778 NA Intergenic Intergenic 36032 NM_030707 80891 Mm.45173 NM_030707 ENSMUSG00000015852 Fcrls 2810439C17Rik|9330158F12|FcRH2sc|Fcrh2|IFGP2|IgSR|MMAN-g|Msr2|moFcRH2sc Fc receptor-like S, scavenger receptor protein-coding 0.005000 0.328358 -16(CCATTATCTTTTAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2349 chr3 94319622 94319822 + -1.11778 NA intron (NM_029431, intron 2 of 5) RMER1B|Other|Other 9590 NM_029431 75778 Mm.45092 NM_029431 ENSMUSG00000028145 Them4 2700077M13Rik|4921507I02Rik thioesterase superfamily member 4 protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1786 chr18 65679546 65679746 + -1.11778 NA intron (NM_001361052, intron 6 of 8) intron (NM_001361052, intron 6 of 8) -18622 NM_177028 319888 Mm.183576 NM_177028 ENSMUSG00000046610 Oacyl 5330437I02Rik|Acyl3 O-acyltransferase like protein-coding 0.020000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-682 chr11 94970245 94970445 + -1.11778 NA intron (NM_009161, intron 7 of 10) intron (NM_009161, intron 7 of 10) 2752 NM_018792 54388 Mm.30482 NM_018792 ENSMUSG00000038994 Hils1 H1.9|TISP64 histone H1-like protein in spermatids 1 protein-coding 0.010000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2026 chr2 62398273 62398473 + -1.11778 NA intron (NM_001159543, intron 2 of 24) intron (NM_001159543, intron 2 of 24) 13858 NM_010074 13482 Mm.1151 NM_010074 ENSMUSG00000035000 Dpp4 Cd26|Dpp-4|THAM dipeptidylpeptidase 4 protein-coding 0.000000 0.358209 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-149 chr13 85766782 85766982 + -1.11857 NA Intergenic RMER17D2|LTR|ERVK 279913 NM_007749 12867 Mm.378898 NM_007749 ENSMUSG00000017778 Cox7c COXVIIc|Cox7c1 cytochrome c oxidase subunit 7C protein-coding 0.000000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-865 chr12 104054083 104054283 + -1.11857 NA Intergenic MIRc|SINE|MIR -9740 NM_026535 68054 Mm.20286 NM_026535 ENSMUSG00000041567 Serpina12 4632419J12Rik serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 12 protein-coding 0.000000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-826 chr12 80014185 80014385 + -1.11857 NA Intergenic Intergenic -78021 NR_131074 77290 Mm.395042 NR_131073 ENSMUSG00000112765 9430078K24Rik - RIKEN cDNA 9430078K24 gene ncRNA 0.000000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-997 chr13 85766801 85767001 + -1.11857 NA Intergenic RMER17D2|LTR|ERVK 279894 NM_007749 12867 Mm.378898 NM_007749 ENSMUSG00000017778 Cox7c COXVIIc|Cox7c1 cytochrome c oxidase subunit 7C protein-coding 0.000000 0.437811 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-128 chr13 8191926 8192126 + -1.11857 NA Intergenic Intergenic -10840 NM_052977 94191 Mm.425794 NM_052977 ENSMUSG00000052551 Adarb2 Adar3|RED2 adenosine deaminase, RNA-specific, B2 protein-coding 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-327 chr10 5571325 5571525 + -1.11857 NA Intergenic MTD|LTR|ERVL-MaLR -20733 NM_153399 64009 Mm.331626 NM_022027 ENSMUSG00000096054 Syne1 8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1 spectrin repeat containing, nuclear envelope 1 protein-coding 0.010000 0.487562 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-423 chr5 12392825 12393025 + -1.11857 NA intron (NM_028882, intron 1 of 17) intron (NM_028882, intron 1 of 17) 9759 NM_028882 108151 Mm.89313 NM_028882 ENSMUSG00000040254 Sema3d 4631426B19Rik sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D protein-coding 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1269 chr15 22009633 22009833 + -1.11857 NA Intergenic ORR1C2|LTR|ERVL-MaLR 705251 NM_001165971 545091 Mm.475598 NM_001165971 Hnrnpa1l2-ps2 EG545091|Gm5803 heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2 protein-coding 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2725 chr5 12392872 12393072 + -1.11857 NA intron (NM_028882, intron 1 of 17) intron (NM_028882, intron 1 of 17) 9806 NM_028882 108151 Mm.89313 NM_028882 ENSMUSG00000040254 Sema3d 4631426B19Rik sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D protein-coding 0.015000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-39 chr10 5571272 5571472 + -1.11857 NA Intergenic MTD|LTR|ERVL-MaLR -20680 NM_153399 64009 Mm.331626 NM_022027 ENSMUSG00000096054 Syne1 8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1 spectrin repeat containing, nuclear envelope 1 protein-coding 0.015000 0.477612 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-218 chr15 94704398 94704598 + -1.11857 NA intron (NM_178789, intron 2 of 7) intron (NM_178789, intron 2 of 7) 75313 NM_178789 320709 Mm.74873 NM_178789 ENSMUSG00000063296 Tmem117 B930062P21Rik transmembrane protein 117 protein-coding 0.015000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1801 chr18 75735743 75735943 + -1.12087 NA Intergenic B4|SINE|B4 -38147 NM_201354 269037 Mm.36745 NM_201354 ENSMUSG00000052928 Ctif Gm672 CBP80/20-dependent translation initiation factor protein-coding 0.010000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3139 chr7 73002814 73003014 + -1.12090 NA Intergenic Intergenic 99154 NR_046024 625243 Mm.261798 NR_046024 ENSMUSG00000108383 Gm6567 - predicted gene 6567 ncRNA 0.005000 0.318408 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-358 chr3 75928089 75928289 + -1.12090 NA intron (NM_175193, intron 1 of 14) intron (NM_175193, intron 1 of 14) 28760 NM_001291069 73124 Mm.249232 NM_175193 ENSMUSG00000034109 Golim4 3110027H23Rik|GIMPC|GPP130|Golph4|P138 golgi integral membrane protein 4 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-613 chr11 47067657 47067857 + -1.12090 NA intron (NM_011891, intron 6 of 7) PB1D10|SINE|Alu 256958 NM_178759 276891 Mm.69002 NM_178759 ENSMUSG00000055546 Timd4 B430010N18Rik|TIM-4|Tim4 T cell immunoglobulin and mucin domain containing 4 protein-coding 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2316 chr3 75928084 75928284 + -1.12090 NA intron (NM_175193, intron 1 of 14) intron (NM_175193, intron 1 of 14) 28765 NM_001291069 73124 Mm.249232 NM_175193 ENSMUSG00000034109 Golim4 3110027H23Rik|GIMPC|GPP130|Golph4|P138 golgi integral membrane protein 4 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-213 chr1 123564660 123564860 + -1.12090 NA intron (NM_199021, intron 5 of 25) intron (NM_199021, intron 5 of 25) 480799 NM_199021 269109 Mm.417716 NM_199021 ENSMUSG00000036815 Dpp10 6430601K09Rik|DPP X|Dprp3 dipeptidylpeptidase 10 protein-coding 0.000000 0.313433 15(TATGCATATGCATG,+,0.00),15(TATGCATATGCATG,-,0.00) -95(ATTTGCATGGAAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2657 chr4 100836580 100836780 + -1.12090 NA intron (NM_198037, intron 1 of 26) intron (NM_198037, intron 1 of 26) 60001 NM_198037 320508 Mm.151962 NM_198037 ENSMUSG00000028532 Cachd1 1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573 cache domain containing 1 protein-coding 0.015000 0.477612 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-384 chr3 141112549 141112749 + -1.12098 NA Intergenic Intergenic 99706 NM_008811 18598 Mm.4223 NM_008811 ENSMUSG00000047674 Pdha2 Pdhal pyruvate dehydrogenase E1 alpha 2 protein-coding 0.000000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-548 chr8 127548573 127548773 + -1.12129 NA intron (NM_001363431, intron 22 of 24) intron (NM_001363431, intron 22 of 24) 249061 NM_001013580 93742 Mm.299254 NM_033620 ENSMUSG00000025812 Pard3 AA960621|AI256638|Asip|D8Ertd580e|Par-3|Par3|Pard-3|Pard3a|Phip par-3 family cell polarity regulator protein-coding 0.035000 0.502488 -21(TTATGAATGAAAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-517 chr10 111745737 111745937 + -1.12189 NA Intergenic Intergenic 128539 NR_046029 629206 Mm.391444 NR_046029 ENSMUSG00000112533 Gm20758 - predicted gene, 20758 ncRNA 0.010000 0.358209 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-139 chr13 38810341 38810541 + -1.12227 NA Intergenic Intergenic 150096 NM_134060 108652 Mm.255506 NM_134060 ENSMUSG00000021432 Slc35b3 4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2 solute carrier family 35, member B3 protein-coding 0.010000 0.393035 -24(TCTGCATTTGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-139 chr1 79593922 79594122 + -1.12227 NA Intergenic Intergenic 77950 NM_183027 252903 Mm.32409 NM_183027 ENSMUSG00000054702 Ap1s3 1190009B22|Jr2|[s]3A adaptor-related protein complex AP-1, sigma 3 protein-coding 0.005000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-17 chr1 79593983 79594183 + -1.12227 NA Intergenic Intergenic 77889 NM_183027 252903 Mm.32409 NM_183027 ENSMUSG00000054702 Ap1s3 1190009B22|Jr2|[s]3A adaptor-related protein complex AP-1, sigma 3 protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1205 chr14 110510902 110511102 + -1.12271 NA Intergenic MLT1D|LTR|ERVL-MaLR 244147 NM_175499 239250 Mm.49728 NM_175499 ENSMUSG00000045871 Slitrk6 4832410J21Rik|Sltk6 SLIT and NTRK-like family, member 6 protein-coding 0.000000 0.378109 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-115 chr12 41445349 41445549 + -1.12321 NA intron (NM_053122, intron 4 of 6) intron (NM_053122, intron 4 of 6) 40608 NM_001271709 16981 Mm.404786 NM_010733 ENSMUSG00000036295 Lrrn3 NLRR-3 leucine rich repeat protein 3, neuronal protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-60 chr1 41447423 41447623 + -1.12321 NA Intergenic Intergenic -266271 NR_040475 74897 Mm.243822 NR_040475 ENSMUSG00000104072 4930448I06Rik - RIKEN cDNA 4930448I06 gene ncRNA 0.000000 0.303483 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1633 chr17 68818905 68819105 + -1.12358 NA Intergenic Intergenic -18131 NM_001206661 622645 Mm.86422 NM_001206661 ENSMUSG00000095407 Tmem200c EG622645|Gm6338 transmembrane protein 200C protein-coding 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1128 chr14 63653131 63653331 + -1.12358 NA intron (NM_173393, intron 1 of 2) intron (NM_173393, intron 1 of 2) 46701 NM_173393 219149 Mm.32071 NM_173393 ENSMUSG00000035067 Xkr6 2700008G24Rik|BC024502|Xrg6 X-linked Kx blood group related 6 protein-coding 0.000000 0.507463 1(ATTAACATAACAACAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3281 chr8 15072934 15073134 + -1.12358 NA intron (NM_008664, intron 6 of 36) intron (NM_008664, intron 6 of 36) 15381 NM_008664 17930 Mm.272115 NM_008664 ENSMUSG00000031461 Myom2 AW146149 myomesin 2 protein-coding 0.020000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2655 chr4 99276228 99276428 + -1.12358 NA Intergenic Intergenic 82181 NM_001145967 242557 Mm.241663 NM_175029 ENSMUSG00000028550 Atg4c Apg4-C|Apg4c|Atg4cl|Autl1 autophagy related 4C, cysteine peptidase protein-coding 0.005000 0.363184 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-529 chr8 77878897 77879097 + -1.12358 NA Intergenic Intergenic -154545 NM_010332 13617 Mm.283168 NM_010332 ENSMUSG00000031616 Ednra AEA001|ET-AR|ETa|Gpcr10|Mhdaaea1 endothelin receptor type A protein-coding 0.000000 0.288557 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-145 chr13 75390150 75390350 + -1.12358 NA Intergenic Intergenic -254796 NR_030451 751556 NR_030451 ENSMUSG00000076236 Mir682 Mirn682|mir-682|mmu-mir-682 microRNA 682 ncRNA 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-954 chr13 47719228 47719428 + -1.12358 NA Intergenic Intergenic 51778 NR_153835 74939 Mm.342710 NR_153835 ENSMUSG00000114509 4930471G24Rik - RIKEN cDNA 4930471G24 gene ncRNA 0.030000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-981 chr13 75390129 75390329 + -1.12358 NA Intergenic Intergenic -254817 NR_030451 751556 NR_030451 ENSMUSG00000076236 Mir682 Mirn682|mir-682|mmu-mir-682 microRNA 682 ncRNA 0.005000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-517 chr8 35370721 35370921 + -1.12358 NA Intergenic Intergenic -4938 NM_177741 244416 Mm.247126 NM_177741 ENSMUSG00000046794 Ppp1r3b 6430576E21|AW821953|GL|PTG protein phosphatase 1, regulatory subunit 3B protein-coding 0.015000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-461 chr10 80649293 80649493 + -1.12358 NA intron (NM_145361, intron 1 of 8) intron (NM_145361, intron 1 of 8) 7678 NM_145361 208198 Mm.60720 NM_145361 ENSMUSG00000003344 Btbd2 2610037C03Rik|4930512K17Rik BTB (POZ) domain containing 2 protein-coding 0.005000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3382 chr8 77878914 77879114 + -1.12358 NA Intergenic Intergenic -154562 NM_010332 13617 Mm.283168 NM_010332 ENSMUSG00000031616 Ednra AEA001|ET-AR|ETa|Gpcr10|Mhdaaea1 endothelin receptor type A protein-coding 0.000000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3368 chr8 71316631 71316831 + -1.12442 NA intron (NM_015742, intron 3 of 39) RLTR12B|LTR|ERVK 44017 NM_001142323 17925 Mm.33779 NM_015742 ENSMUSG00000004677 Myo9b - myosin IXb protein-coding 0.000000 0.417910 16(ATCAGCATGGGAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2263 chr3 52330363 52330563 + -1.12500 NA intron (NM_019739, intron 1 of 2) intron (NM_019739, intron 1 of 2) 62126 NM_019739 56458 Mm.29891 NM_019739 ENSMUSG00000044167 Foxo1 AI876417|Afxh|FKHR|Fkhr1|Foxo1a forkhead box O1 protein-coding 0.010000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1336 chr15 58009943 58010143 + -1.12500 NA exon (NM_173862, exon 4 of 4) exon (NM_173862, exon 4 of 4) 24140 NM_173862 239463 Mm.221241 NM_173862 ENSMUSG00000051225 Fam83a - family with sequence similarity 83, member A protein-coding 0.015000 0.636816 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2883 chr5 125164647 125164847 + -1.12500 NA intron (NM_001253904, intron 1 of 47) intron (NM_001253904, intron 1 of 47) 14467 NM_001253904 20602 Mm.278646 NM_011424 ENSMUSG00000029478 Ncor2 N-CoR|SMRT|SMRTe nuclear receptor co-repressor 2 protein-coding 0.010000 0.552239 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2705 chr4 148952674 148952874 + -1.12500 NA promoter-TSS (NR_154553) promoter-TSS (NR_154553) -452 NR_154553 108168987 Mm.393596 NR_154553 Gm13205 AA408865 predicted gene 13205 ncRNA 0.095000 0.716418 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-662 chr11 78662682 78662882 + -1.12500 NA intron (NM_008702, intron 1 of 10) intron (NM_008702, intron 1 of 10) 34643 NM_008702 18099 Mm.9001 NM_008702 ENSMUSG00000017376 Nlk AI194375 nemo like kinase protein-coding 0.015000 0.437811 -22(CTTAGCAAAACAAGAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-710 chr11 113766581 113766781 + -1.12500 NA Intergenic Intergenic -14866 NM_001163346 56699 Mm.293378 NM_020006 ENSMUSG00000041598 Cdc42ep4 1500041M20Rik|Borg4|CEP4 CDC42 effector protein (Rho GTPase binding) 4 protein-coding 0.015000 0.606965 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-601 chr11 39579085 39579285 + -1.12500 NA Intergenic Intergenic -188960 NR_126439 75315 Mm.461295 NR_126439 4930553C11Rik - RIKEN cDNA 4930553C11 gene ncRNA 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1257 chr15 15039456 15039656 + -1.12500 NA Intergenic Intergenic -1689359 NM_009869 12565 Mm.439758 NM_009869 ENSMUSG00000025370 Cdh9 - cadherin 9 protein-coding 0.000000 0.328358 78(ATTAAAATGAGTATAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1144 chr14 69889428 69889628 + -1.12500 NA intron (NM_028560, intron 3 of 6) intron (NM_028560, intron 3 of 6) 49121 NM_028526 73523 Mm.23509 NM_028526 ENSMUSG00000022085 Pebp4 PEBP-4 phosphatidylethanolamine binding protein 4 protein-coding 0.025000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3329 chr8 44357218 44357418 + -1.12500 NA Intergenic Lx10|LINE|L1 -592890 NM_001081286 14107 Mm.27365 NM_001081286 ENSMUSG00000070047 Fat1 2310038E12Rik|AU023433|Fath|mFat1 FAT atypical cadherin 1 protein-coding 0.000000 0.452736 36(GAGTTGTGATGCAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1286 chr15 30962882 30963082 + -1.12500 NA intron (NM_008729, intron 17 of 22) intron (NM_008729, intron 17 of 22) -76144 NR_045186 73784 Mm.66947 NR_045186 ENSMUSG00000115474 4930430F21Rik - RIKEN cDNA 4930430F21 gene ncRNA 0.015000 0.512438 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-353 chr3 52330288 52330488 + -1.12500 NA intron (NM_019739, intron 1 of 2) intron (NM_019739, intron 1 of 2) 62051 NM_019739 56458 Mm.29891 NM_019739 ENSMUSG00000044167 Foxo1 AI876417|Afxh|FKHR|Fkhr1|Foxo1a forkhead box O1 protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2507 chr4 4596070 4596270 + -1.12500 NA Intergenic Intergenic -66712 NM_001277919 622019 Mm.246123 NM_001277919 Gm11780 - predicted gene 11780 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3135 chr7 71383671 71383871 + -1.12500 NA Intergenic Intergenic -525924 NR_130995 78156 Mm.243818 NR_130995 ENSMUSG00000108669 4930441H08Rik - RIKEN cDNA 4930441H08 gene ncRNA 0.020000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1071 chr14 16219114 16219314 + -1.12500 NA Intergenic L1MA5|LINE|L1 24117 NM_001359883 71147 Mm.197960 NM_027695 ENSMUSG00000021786 Oxsm 4933425A18Rik|C80494 3-oxoacyl-ACP synthase, mitochondrial protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3435 chr8 109536818 109537018 + -1.12500 NA intron (NM_019938, intron 16 of 20) intron (NM_019938, intron 16 of 20) 28943 NR_151644 64340 Mm.23705 NM_178380 ENSMUSG00000037993 Dhx38 5730550P09Rik|AI325984|AW540902|Ddx38|KIAA0224|Prp16 DEAH (Asp-Glu-Ala-His) box polypeptide 38 protein-coding 0.010000 0.587065 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3561 chr9 67172305 67172505 + -1.12500 NA Intergenic L1MA5|LINE|L1 38844 NR_045748 100502636 Mm.412607 NR_045748 ENSMUSG00000111556 Gm19299 - predicted gene, 19299 ncRNA 0.015000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2831 chr5 88073837 88074037 + -1.12500 NA Intergenic Intergenic -12619 NM_001252680 20600 Mm.1397 NM_021289 ENSMUSG00000029281 Smr2 MSG2|Vcs2 submaxillary gland androgen regulated protein 2 protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-318 chr1 190881562 190881762 + -1.12500 NA intron (NM_178775, intron 5 of 14) intron (NM_178775, intron 5 of 14) 30108 NM_178775 320119 Mm.220912 NM_178775 ENSMUSG00000089872 Rps6kc1 AA682037|B130003F20Rik|C80612|Rpk118 ribosomal protein S6 kinase polypeptide 1 protein-coding 0.010000 0.417910 -26(ATTTGTAAAATAAAAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2008 chr2 52458076 52458276 + -1.12500 NA intron (NM_001037099, intron 9 of 13) intron (NM_001037099, intron 9 of 13) -33302 NM_182994 75423 Mm.314378 NM_182994 ENSMUSG00000036093 Arl5a 2410015N24Rik|2810410P22Rik|AA408731|AW610751|Arl5|T25534 ADP-ribosylation factor-like 5A protein-coding 0.000000 0.343284 27(TTTTTCTCATTTTATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2305 chr3 69056673 69056873 + -1.12500 NA Intergenic Intergenic -12031 NM_025863 66949 Mm.176695 NM_025863 ENSMUSG00000034317 Trim59 2310035M22Rik|2700022F13Rik|Mrf1|TSBF1 tripartite motif-containing 59 protein-coding 0.010000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-256 chr17 62770513 62770713 + -1.12666 NA intron (NM_207654, intron 1 of 4) intron (NM_207654, intron 1 of 4) 110704 NM_207654 13640 Mm.7978 NM_010109 ENSMUSG00000048915 Efna5 AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS ephrin A5 protein-coding 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2300 chr3 67505385 67505585 + -1.12666 NA intron (NM_001164763, intron 1 of 5) MERVL_2A-int|LTR|ERVL 10038 NM_001164763 109222 Mm.38002 NM_001164763 ENSMUSG00000049404 Rarres1 5430417P09Rik|AI662122 retinoic acid receptor responder (tazarotene induced) 1 protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1759 chr18 49234740 49234940 + -1.12666 NA Intergenic Intergenic -288449 NR_033785 67321 Mm.245802 NR_033785 ENSMUSG00000100297 1700044K03Rik - RIKEN cDNA 1700044K03 gene ncRNA 0.005000 0.402985 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-95 chr11 42499302 42499502 + -1.12666 NA intron (NM_001362646, intron 5 of 9) Lx4A|LINE|L1 78201 NM_001347314 14401 Mm.338723 NM_008070 ENSMUSG00000007653 Gabrb2 AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2 gamma-aminobutyric acid (GABA) A receptor, subunit beta 2 protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-18 chr1 14373904 14374104 + -1.12666 NA Intergenic Intergenic -63805 NM_001310459 14048 Mm.250185 NM_010164 ENSMUSG00000025932 Eya1 bor EYA transcriptional coactivator and phosphatase 1 protein-coding 0.005000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1626 chr17 62770345 62770545 + -1.12666 NA intron (NM_207654, intron 1 of 4) intron (NM_207654, intron 1 of 4) 110872 NM_207654 13640 Mm.7978 NM_010109 ENSMUSG00000048915 Efna5 AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS ephrin A5 protein-coding 0.010000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1085 chr14 24468907 24469107 + -1.12688 NA intron (NM_001081247, intron 15 of 30) intron (NM_001081247, intron 15 of 30) 18051 NM_001081247 218832 Mm.343610 NM_183157 ENSMUSG00000025280 Polr3a 9330175N20Rik|BC053071|RPC1|RPC155 polymerase (RNA) III (DNA directed) polypeptide A protein-coding 0.015000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1527 chr16 78763442 78763642 + -1.12790 NA Intergenic Intergenic -167406 NM_001362555 246048 Mm.77895 NM_139134 ENSMUSG00000022860 Chodl 3110074E07Rik|MT75|PRED12 chondrolectin protein-coding 0.000000 0.402985 -16(AATGCACATGCATA,+,0.00),-16(AATGCACATGCATA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-236 chr16 78763423 78763623 + -1.12790 NA Intergenic Intergenic -167425 NM_001362555 246048 Mm.77895 NM_139134 ENSMUSG00000022860 Chodl 3110074E07Rik|MT75|PRED12 chondrolectin protein-coding 0.000000 0.417910 3(AATGCACATGCATA,+,0.00),3(AATGCACATGCATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1251 chr15 12341141 12341341 + -1.12905 NA intron (NM_025673, intron 2 of 3) intron (NM_025673, intron 2 of 3) 19745 NM_025673 66629 Mm.157655 NM_025673 ENSMUSG00000022200 Golph3 4733401N08Rik|5730410D03Rik|AW413496 golgi phosphoprotein 3 protein-coding 0.010000 0.373134 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-327 chr2 103625264 103625464 + -1.12905 NA intron (NM_178890, intron 1 of 16) intron (NM_178890, intron 1 of 16) 59054 NM_178890 99382 Mm.35850 NM_178890 ENSMUSG00000032724 Abtb2 AW539457|BPOZ-2 ankyrin repeat and BTB (POZ) domain containing 2 protein-coding 0.015000 0.517413 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-578 chrX 96605520 96605720 + -1.13021 NA Intergenic MTE2b-int|LTR|ERVL-MaLR -107848 NM_029536 76206 Mm.256065 NM_029536 ENSMUSG00000031210 Gpr165 6530406P05Rik G protein-coupled receptor 165 protein-coding 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-216 chr1 124452471 124452671 + -1.13021 NA Intergenic Intergenic -407012 NM_199021 269109 Mm.417716 NM_199021 ENSMUSG00000036815 Dpp10 6430601K09Rik|DPP X|Dprp3 dipeptidylpeptidase 10 protein-coding 0.000000 0.308458 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-8 chr1 32657285 32657485 + -1.13021 NA intron (NM_133235, intron 8 of 8) intron (NM_133235, intron 8 of 8) -110092 NM_001164286 408191 Mm.479439 NM_001164286 ENSMUSG00000091318 Gm5415 EG408191|Senp14 predicted gene 5415 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1831 chr19 10323795 10323995 + -1.13021 NA Intergenic Intergenic -19018 NM_198114 269060 Mm.329718 NM_198114 ENSMUSG00000035735 Dagla Nsddr diacylglycerol lipase, alpha protein-coding 0.005000 0.482587 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-489 chr7 29061666 29061866 + -1.13021 NA intron (NM_009109, intron 64 of 105) intron (NM_009109, intron 64 of 105) 21928 NR_035489 100316710 NR_035489 ENSMUSG00000089219 Mir1963 mir-1963|mmu-mir-1963 microRNA 1963 ncRNA 0.060000 0.587065 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3747 chrX 139605446 139605646 + -1.13021 NA intron (NM_001254761, intron 1 of 6) intron (NM_001254761, intron 1 of 6) -5074 NM_023270 66889 Mm.27764 NM_023270 ENSMUSG00000031438 Rnf128 1300002C13Rik|AI987883|GRAIL|Greul1 ring finger protein 128 protein-coding 0.000000 0.368159 7(TTTAGCATAAAAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-160 chr1 92031126 92031326 + -1.13021 NA intron (NM_207225, intron 3 of 26) intron (NM_207225, intron 3 of 26) 149115 NM_207225 208727 Mm.318567 NM_207225 ENSMUSG00000026313 Hdac4 4932408F19Rik|HD4 histone deacetylase 4 protein-coding 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-709 chr11 112773221 112773421 + -1.13021 NA Intergenic Intergenic -8889 NM_011448 20682 Mm.286407 NM_011448 ENSMUSG00000000567 Sox9 2010306G03Rik|AV220920|mKIAA4243 SRY (sex determining region Y)-box 9 protein-coding 0.015000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1272 chr15 23842702 23842902 + -1.13021 NA Intergenic Intergenic 806339 NM_001081299 320865 Mm.241965 NM_001081299 ENSMUSG00000040420 Cdh18 B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol cadherin 18 protein-coding 0.000000 0.368159 -82(CATGCATATGTAGA,+,0.00),-82(CATGCATATGTAGA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-26 chr1 124452437 124452637 + -1.13021 NA Intergenic Intergenic -406978 NM_199021 269109 Mm.417716 NM_199021 ENSMUSG00000036815 Dpp10 6430601K09Rik|DPP X|Dprp3 dipeptidylpeptidase 10 protein-coding 0.005000 0.318408 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-485 chr6 118444361 118444561 + -1.13033 NA intron (NM_001361900, intron 2 of 4) L1MA5A|LINE|L1 11045 NM_001361900 72720 Mm.212572 NM_028335 ENSMUSG00000030145 Zfp248 2810037F07Rik|E130106N01Rik zinc finger protein 248 protein-coding 0.020000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-509 chr10 107905529 107905729 + -1.13176 NA intron (NM_001370989, intron 3 of 57) intron (NM_001370989, intron 3 of 57) 6750 NM_001370989 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2149 chr2 141279331 141279531 + -1.13176 NA intron (NM_001013802, intron 5 of 18) intron (NM_001013802, intron 5 of 18) -607955 NM_001172160 71436 Mm.426781 NM_178382 ENSMUSG00000051379 Flrt3 5530600M07Rik|C430047I10Rik|mKIAA1469 fibronectin leucine rich transmembrane protein 3 protein-coding 0.010000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-699 chr11 105508386 105508586 + -1.13336 NA Intergenic Intergenic -51751 NM_172568 632687 Mm.121570 NM_172568 ENSMUSG00000078627 March10 4933417C16Rik|AV039223|Rnf190 membrane-associated ring finger (C3HC4) 10 protein-coding 0.020000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1083 chr14 23044787 23044987 + -1.13391 NA intron (NR_033550, intron 2 of 3) intron (NR_033550, intron 2 of 3) 49684 NR_033550 791307 Mm.364384 NR_033550 ENSMUSG00000068680 Gm10248 - predicted gene 10248 ncRNA 0.005000 0.383085 -78(ATATGAATAAAAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3141 chr7 73481868 73482068 + -1.13391 NA intron (NM_001081345, intron 17 of 38) intron (NM_001081345, intron 17 of 38) 59778 NM_001081345 244059 Mm.34539 NM_001081345 ENSMUSG00000078671 Chd2 2810013C04Rik|2810040A01Rik|5630401D06Rik|AI851092|BC029703|CHD-2 chromodomain helicase DNA binding protein 2 protein-coding 0.015000 0.378109 -70(ATTATAATAAGAATAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-484 chr10 94992257 94992457 + -1.13391 NA Intergenic Intergenic -47512 NM_018797 54712 Mm.256712 NM_018797 ENSMUSG00000074785 Plxnc1 2510048K12Rik|AW742158|CD232|Vespr plexin C1 protein-coding 0.030000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-669 chr11 85253326 85253526 + -1.13391 NA Intergenic Intergenic 18260 NR_028329 654810 Mm.209580 NR_028329 ENSMUSG00000085628 Appbp2os D630032N06Rik amyloid beta precursor protein (cytoplasmic tail) binding protein 2, opposite strand ncRNA 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1149 chr14 73105507 73105707 + -1.13391 NA Intergenic Intergenic -36903 NM_001170694 105670 Mm.280068 NM_134083 ENSMUSG00000022106 Rcbtb2 2610028E02Rik|2810420M18Rik|AI448345|AW240694|Chc1l|RC/BTB2 regulator of chromosome condensation (RCC1) and BTB (POZ) domain containing protein 2 protein-coding 0.020000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2239 chr3 31489216 31489416 + -1.13391 NA Intergenic RMER1A|Other|Other -178997 NM_172861 241919 Mm.285366 NM_172861 ENSMUSG00000069072 Slc7a14 A930013N06|BC061928 solute carrier family 7 (cationic amino acid transporter, y+ system), member 14 protein-coding 0.000000 0.383085 13(GTTTTGTTTTGTTTAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2431 chr3 125917904 125918104 + -1.13391 NA intron (NR_149311, intron 1 of 5) intron (NR_149311, intron 1 of 5) 20648 NR_149311 22239 Mm.306021 NM_011674 ENSMUSG00000032854 Ugt8a AI850488|AW455908|Cgt|Ugt8|mCerGT UDP galactosyltransferase 8A protein-coding 0.000000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3737 chrX 130963823 130964023 + -1.13391 NA Intergenic Intergenic 1214181 NM_172493 54004 Mm.10763 NM_017398 ENSMUSG00000034480 Diaph2 Dia3|Diap2|Drf2|E430022I22Rik diaphanous related formin 2 protein-coding 0.000000 0.298507 1(TTTTTCTAATGCAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-762 chr12 33818619 33818819 + -1.13391 NA Intergenic Intergenic -109706 NM_033522 114712 Mm.204643 NM_033522 ENSMUSG00000046518 Ferd3l Mnato3|N-twist|Nato|Nato3|Ntwist|Ptfb|bHLHa31|fer3 Fer3 like bHLH transcription factor protein-coding 0.005000 0.328358 75(TCATTGTTATTTTATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2037 chr2 72031560 72031760 + -1.13391 NA intron (NM_019688, intron 2 of 29) intron (NM_019688, intron 2 of 29) -22957 NM_001204166 56508 Mm.196153 NM_019688 ENSMUSG00000049044 Rapgef4 1300003D15Rik|5730402K07Rik|6330581N18Rik|EPAC 2|Epac-2|Epac2|mKIAA4040 Rap guanine nucleotide exchange factor (GEF) 4 protein-coding 0.020000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-950 chr13 44501940 44502140 + -1.13391 NA Intergenic Intergenic 62313 NR_045489 69491 Mm.392410 NR_045489 ENSMUSG00000098144 1700029N11Rik - RIKEN cDNA 1700029N11 gene ncRNA 0.000000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2075 chr2 105920212 105920412 + -1.13391 NA intron (NM_028260, intron 2 of 6) L1_Mus4|LINE|L1 15674 NM_028260 66541 Mm.272253 NM_028260 ENSMUSG00000042670 Immp1l 1500034J20Rik|2610528O17Rik|AU042386 IMP1 inner mitochondrial membrane peptidase-like (S. cerevisiae) protein-coding 0.010000 0.417910 46(ATAAAAATGAAAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3241 chr7 133823329 133823529 + -1.13391 NA intron (NM_025850, intron 1 of 10) Arthur1|DNA|hAT-Tip100 -40644 NM_001286031 101437 Mm.199223 NM_133941 ENSMUSG00000030986 Dhx32 3110079L04Rik|4732469F02Rik|AA408140|Ddx32|muDDX32 DEAH (Asp-Glu-Ala-His) box polypeptide 32 protein-coding 0.010000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1823 chr18 90570328 90570528 + -1.13391 NA Intergenic Intergenic -9397 NM_001362365 108168395 Mm.391131 NM_001362365 ENSMUSG00000110277 Gm45871 - predicted gene 45871 protein-coding 0.005000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2028 chr2 62600384 62600584 + -1.13391 NA intron (NM_027835, intron 13 of 15) intron (NM_027835, intron 13 of 15) -26463 NM_007986 14089 Mm.41816 NM_007986 ENSMUSG00000000392 Fap SIMP fibroblast activation protein protein-coding 0.005000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3406 chr8 90861378 90861578 + -1.13391 NA intron (NM_177224, intron 2 of 39) intron (NM_177224, intron 2 of 39) 32643 NM_177224 109151 Mm.100615 NM_177224 ENSMUSG00000056608 Chd9 1810014J18Rik|9030205D12Rik|A330063D19Rik|AD013|PRIC320|mKIAA0308 chromodomain helicase DNA binding protein 9 protein-coding 0.005000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3709 chrX 67614054 67614254 + -1.13391 NA Intergenic RLTR17|LTR|ERVK 79408 NM_001163195 666842 Mm.422933 NM_001163195 ENSMUSG00000079577 Gm14692 - predicted gene 14692 protein-coding 0.005000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3200 chr7 110157425 110157625 + -1.13391 NA Intergenic Intergenic 35466 NM_001355058 22390 Mm.287173 NM_009516 ENSMUSG00000031016 Wee1 Wee1A WEE 1 homolog 1 (S. pombe) protein-coding 0.010000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2273 chr3 56538473 56538673 + -1.13391 NA Intergenic Intergenic -354872 NM_030595 26422 Mm.384353 NM_030595 ENSMUSG00000027799 Nbea Lyst2|mKIAA1544 neurobeachin protein-coding 0.005000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1579 chr17 11207798 11207998 + -1.13391 NA intron (NM_016694, intron 2 of 11) intron (NM_016694, intron 2 of 11) 367539 NM_016694 50873 Mm.311110 NM_016694 ENSMUSG00000023826 Prkn Park2 parkin RBR E3 ubiquitin protein ligase protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-590 chr11 32087547 32087747 + -1.13391 NA Intergenic Intergenic 13581 NR_130637 104692 Mm.414035 NR_130637 ENSMUSG00000086386 Gm12108 BB052462 predicted gene 12108 ncRNA 0.005000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1771 chr18 55122547 55122747 + -1.13391 NA Intergenic Intergenic -130056 NM_001360787 269023 Mm.192984 NM_175751 ENSMUSG00000052713 Zfp608 4932417D18Rik|D430007A19Rik|Znf608 zinc finger protein 608 protein-coding 0.005000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-356 chr10 19062154 19062354 + -1.13391 NA Intergenic Intergenic -46844 NM_009397 21929 Mm.116683 NM_009397 ENSMUSG00000019850 Tnfaip3 A20|Tnfip3 tumor necrosis factor, alpha-induced protein 3 protein-coding 0.030000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1745 chr18 42641087 42641287 + -1.13391 NA Intergenic Intergenic -61535 NM_181543 240239 Mm.186779 NM_181543 ENSMUSG00000042816 Gpr151 C130082O03Rik|GalRL|PGR7|nGPCR-2037 G protein-coupled receptor 151 protein-coding 0.015000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-885 chr13 6299328 6299528 + -1.13391 NA Intergenic L1MB3|LINE|L1 -248729 NM_001360106 69617 Mm.41933 NM_145131 ENSMUSG00000021193 Pitrm1 2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104 pitrilysin metallepetidase 1 protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3536 chr9 48775611 48775811 + -1.13391 NA intron (NM_001033324, intron 2 of 6) intron (NM_001033324, intron 2 of 6) 60230 NM_001033324 235320 Mm.457803 NM_001033324 ENSMUSG00000066687 Zbtb16 AI467657|PLZF|Zfp145|lu zinc finger and BTB domain containing 16 protein-coding 0.005000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2978 chr6 54799985 54800185 + -1.13391 NA Intergenic L1_Mur3|LINE|L1 -16831 NM_199143 387524 Mm.286149 NM_199143 ENSMUSG00000058446 Znrf2 1190002C14Rik|AU044205|D6Ertd365e zinc and ring finger 2 protein-coding 0.005000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1670 chr18 4793780 4793980 + -1.13391 NA Intergenic Intergenic -18606 NR_045881 100038439 Mm.387569 NR_045881 ENSMUSG00000097043 Gm10556 - predicted gene 10556 ncRNA 0.005000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2595 chr4 67974359 67974559 + -1.13391 NA Intergenic Lx5c|LINE|L1 347502 NR_151548 102633975 NR_151548 Gm12911 - predicted gene 12911 ncRNA 0.000000 0.303483 78(TTTTTTTTTTATAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-675 chr11 88577445 88577645 + -1.13391 NA intron (NM_054043, intron 6 of 13) intron (NM_054043, intron 6 of 13) -41706 NR_131025 68397 Mm.426889 NR_131025 0610039H22Rik - RIKEN cDNA 0610039H22 gene ncRNA 0.010000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2634 chr4 89169675 89169875 + -1.13391 NA intron (NM_024433, intron 4 of 7) intron (NM_024433, intron 4 of 7) 32405 NM_024433 66902 Mm.28500 NM_024433 ENSMUSG00000062937 Mtap 1300019I21Rik|MSAP methylthioadenosine phosphorylase protein-coding 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2872 chr5 115939244 115939444 + -1.13391 NA intron (NM_007708, intron 17 of 46) intron (NM_007708, intron 17 of 46) 85084 NM_031869 19079 Mm.458152 NM_031869 ENSMUSG00000029513 Prkab1 1300015D22Rik|AU021155|E430008F22 protein kinase, AMP-activated, beta 1 non-catalytic subunit protein-coding 0.035000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2145 chr2 139382401 139382601 + -1.13391 NA Intergenic Intergenic -111412 NM_001356507 228677 Mm.100450 NM_175467 ENSMUSG00000039092 Sptlc3 C130053K05Rik serine palmitoyltransferase, long chain base subunit 3 protein-coding 0.005000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2231 chr3 24788664 24788864 + -1.13391 NA Intergenic Intergenic -4758 NM_001326288 635702 Mm.448351 NM_001326288 ENSMUSG00000102758 Naaladl2 2810043G22Rik|EG635702|Gm1021 N-acetylated alpha-linked acidic dipeptidase-like 2 protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-164 chr1 95322378 95322578 + -1.13391 NA intron (NM_026321, intron 1 of 2) intron (NM_026321, intron 1 of 2) 8850 NM_026321 67698 Mm.272705 NM_026321 ENSMUSG00000051185 Fam174a 2310044D20Rik|Fam174|Naa6|Tmem157 family with sequence similarity 174, member A protein-coding 0.005000 0.477612 10(CTCAGAATGACAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3185 chr7 96540985 96541185 + -1.13391 NA intron (NM_001310762, intron 4 of 32) intron (NM_001310762, intron 4 of 32) -199121 NR_046043 670727 Mm.421352 NR_046043 ENSMUSG00000085751 Gm15412 - predicted gene 15412 ncRNA 0.010000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2210 chr3 6789276 6789476 + -1.13391 NA Intergenic Intergenic -168933 NM_027048 69347 Mm.45822 NM_027048 ENSMUSG00000069118 1700008P02Rik - RIKEN cDNA 1700008P02 gene protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3748 chrX 139857871 139858071 + -1.13391 NA intron (NM_029413, intron 4 of 15) intron (NM_029413, intron 4 of 15) 13683 NM_029413 75746 Mm.23269 NM_029413 ENSMUSG00000031434 Morc4 1600017G11Rik|5630401M14Rik|AA117449|Zcwcc2 microrchidia 4 protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1924 chr19 59425449 59425649 + -1.13391 NA non-coding (NR_002863, exon 4 of 4) non-coding (NR_002863, exon 4 of 4) 33086 NR_002863 329078 Mm.80382 NR_002863 ENSMUSG00000087095 Emx2os - Emx2 opposite strand/antisense transcript (non-protein coding) ncRNA 0.025000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-133 chr1 75869099 75869299 + -1.13391 NA Intergenic L1M5|LINE|L1 322737 NM_001357150 20536 Mm.5053 NM_009208 ENSMUSG00000006576 Slc4a3 A930038D23Rik|Ae3 solute carrier family 4 (anion exchanger), member 3 protein-coding 0.010000 0.333333 79(ATATGAATGAATATAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1553 chr16 90584078 90584278 + -1.13391 NA Intergenic ORR1B2-int|LTR|ERVL-MaLR 143193 NM_025642 66578 Mm.180363 NM_025642 ENSMUSG00000022978 Mis18a 2610039C10Rik|2810018N07Rik MIS18 kinetochore protein A protein-coding 0.005000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-596 chr11 36991370 36991570 + -1.13391 NA Intergenic Intergenic -47229 NM_011856 23964 Mm.439889 NM_011856 ENSMUSG00000049336 Tenm2 Odz2|Odz3|Ten-2|Ten-m2 teneurin transmembrane protein 2 protein-coding 0.015000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3028 chr6 95822467 95822667 + -1.13391 NA Intergenic Lx7|LINE|L1 -103721 NM_011507 20917 Mm.371585 NM_011507 ENSMUSG00000061838 Suclg2 AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG succinate-Coenzyme A ligase, GDP-forming, beta subunit protein-coding 0.000000 0.298507 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2506 chr3 159395390 159395590 + -1.13391 NA Intergenic Intergenic -99943 NM_001172092 76131 Mm.371655 NM_029523 ENSMUSG00000028175 Depdc1a 5830484J08Rik|Depdc1 DEP domain containing 1a protein-coding 0.000000 0.338308 -92(CTTTTCATGAGAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3232 chr7 129763484 129763684 + -1.13391 NA Intergenic Intergenic 171721 NM_172255 207425 Mm.229323 NM_172255 ENSMUSG00000042055 Wdr11 2900055P10Rik|AW489876|Brwd2|mKIAA1351 WD repeat domain 11 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-731 chr12 11013232 11013432 + -1.13431 NA Intergenic Intergenic -34481 NR_045860 71457 Mm.95280 NR_045860 ENSMUSG00000113620 7420701I03Rik - RIKEN cDNA 7420701I03 gene ncRNA 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3007 chr6 79924931 79925131 + -1.13431 NA Intergenic Intergenic -93846 NM_001134743 243499 Mm.483425 NM_178731 ENSMUSG00000052581 Lrrtm4 7530419J18Rik|A230052N11 leucine rich repeat transmembrane neuronal 4 protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1847 chr19 17778231 17778431 + -1.13431 NA intron (NM_001190483, intron 2 of 37) intron (NM_001190483, intron 2 of 37) 59301 NM_001163144 18552 Mm.3401 NM_001163144 ENSMUSG00000024713 Pcsk5 PC5|PC6|SPC6|b2b1549Clo|b2b585Clo proprotein convertase subtilisin/kexin type 5 protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1462 chr16 45356802 45357002 + -1.13431 NA Intergenic MTD|LTR|ERVL-MaLR 52151 NM_001358443 17470 Mm.245851 NM_010818 ENSMUSG00000022661 Cd200 Mox2|OX2 CD200 antigen protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-371 chr10 25849953 25850153 + -1.13431 NA Intergenic L1MDa|LINE|L1 -12616 NR_045349 73803 Mm.258921 NR_045349 ENSMUSG00000112444 4930401C15Rik - RIKEN cDNA 4930401C15 gene ncRNA 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-489 chr10 99365905 99366105 + -1.13431 NA Intergenic MLT2B3|LTR|ERVL 102774 NM_026268 67603 Mm.1791 NM_026268 ENSMUSG00000019960 Dusp6 1300019I03Rik|MKP-3|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1807 chr18 78478174 78478374 + -1.13431 NA intron (NM_030683, intron 2 of 11) intron (NM_030683, intron 2 of 11) 118676 NM_030683 27411 Mm.44158 NM_030683 ENSMUSG00000024552 Slc14a2 UT-A1|UT-A3 solute carrier family 14 (urea transporter), member 2 protein-coding 0.015000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3518 chr9 34771098 34771298 + -1.13431 NA intron (NM_001190912, intron 1 of 15) intron (NM_001190912, intron 1 of 15) 282467 NM_001190912 67703 Mm.220710 NM_026324 ENSMUSG00000032036 Kirrel3 1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867 kirre like nephrin family adhesion molecule 3 protein-coding 0.000000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-948 chr13 43478653 43478853 + -1.13515 NA intron (NM_019930, intron 1 of 13) intron (NM_019930, intron 1 of 13) 2220 NM_019930 56705 Mm.148781 NM_019930 ENSMUSG00000038546 Ranbp9 IBAP-1|Ibap1|RanBPM RAN binding protein 9 protein-coding 0.020000 0.398010 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-575 chrX 9653112 9653312 + -1.13515 NA Intergenic Intergenic 9771 NM_025975 67117 Mm.29150 NM_025975 ENSMUSG00000031176 Dynlt3 2310075M16Rik|AU042796|Tcte1l dynein light chain Tctex-type 3 protein-coding 0.000000 0.388060 73(ATATGTATGACAATGT,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-340 chr2 148141997 148142197 + -1.13601 NA Intergenic Intergenic -95128 NM_010446 15376 Mm.938 NM_010446 ENSMUSG00000037025 Foxa2 HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b forkhead box A2 protein-coding 0.010000 0.522388 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-172 chr14 67997197 67997397 + -1.13709 NA Intergenic Intergenic -63725 NM_177780 68813 Mm.258155 NM_177780 ENSMUSG00000044447 Dock5 1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc dedicator of cytokinesis 5 protein-coding 0.005000 0.388060 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-5 chr1 27529591 27529791 + -1.13709 NA Intergenic Intergenic -354355 NR_151583 433281 Mm.329306 NR_151583 ENSMUSG00000101514 Gm5524 AI875557|EG433281 predicted gene 5524 ncRNA 0.010000 0.338308 34(TTTCTGTTATGTAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1140 chr14 67997270 67997470 + -1.13709 NA Intergenic Intergenic -63798 NM_177780 68813 Mm.258155 NM_177780 ENSMUSG00000044447 Dock5 1110060D06Rik|AI666732|AI956923|BC016533|E130320D18|lr2|rlc dedicator of cytokinesis 5 protein-coding 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3080 chr6 135930077 135930277 + -1.13715 NA intron (NM_001363750, intron 4 of 14) L1MA6|LINE|L1 243368 NM_008171 14812 Mm.436649 NM_008171 ENSMUSG00000030209 Grin2b AW490526|GluN2B|GluRepsilon2|NR2B|Nmdar2b glutamate receptor, ionotropic, NMDA2B (epsilon 2) protein-coding 0.000000 0.442786 52(TCATTGTCTTTCTGAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1052 chr13 118826446 118826646 + -1.13715 NA Intergenic ORR1A1|LTR|ERVL-MaLR 111847 NM_008002 14165 Mm.317323 NM_008002 ENSMUSG00000021732 Fgf10 AEY17|BB213776|Fgf-10|Gsfaey17 fibroblast growth factor 10 protein-coding 0.000000 0.462687 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-12 chr1 55747833 55748033 + -1.13715 NA intron (NM_001114663, intron 5 of 5) intron (NM_001114663, intron 5 of 5) -183308 NR_045837 329159 Mm.98697 NR_045837 ENSMUSG00000099950 9130227L01Rik - RIKEN cDNA 9130227L01 gene ncRNA 0.000000 0.427861 -85(CATTAATTTTGCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2163 chr2 146939341 146939541 + -1.13715 NA intron (NM_001033298, intron 7 of 13) intron (NM_001033298, intron 7 of 13) -73558 NM_001356403 24128 Mm.3065 NM_011917 ENSMUSG00000027433 Xrn2 - 5'-3' exoribonuclease 2 protein-coding 0.015000 0.462687 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-486 chr6 135930080 135930280 + -1.13715 NA intron (NM_001363750, intron 4 of 14) L1MA6|LINE|L1 243365 NM_008171 14812 Mm.436649 NM_008171 ENSMUSG00000030209 Grin2b AW490526|GluN2B|GluRepsilon2|NR2B|Nmdar2b glutamate receptor, ionotropic, NMDA2B (epsilon 2) protein-coding 0.000000 0.447761 49(TCATTGTCTTTCTGAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-352 chr10 18111553 18111753 + -1.13715 NA intron (NM_009048, intron 10 of 19) intron (NM_009048, intron 10 of 19) 55713 NM_001111065 19707 Mm.4479 NM_009048 ENSMUSG00000019854 Reps1 BB161292 RalBP1 associated Eps domain containing protein protein-coding 0.010000 0.318408 64(AGTGAATAATGTATT,+,0.00) 12(ATTTGCATATTAAAAT,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-224 chr16 47505461 47505661 + -1.13715 NA Intergenic L1MA9|LINE|L1 652938 NR_152166 619300 Mm.384092 NR_152166 6430553K19Rik - RIKEN cDNA 6430553K19 gene ncRNA 0.005000 0.333333 -18(AATGTATTAATCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1607 chr17 44957462 44957662 + -1.13907 NA intron (NR_158206, intron 3 of 11) intron (NR_158206, intron 3 of 11) -76677 NM_029257 75341 Mm.386821 NM_029257 4930564C03Rik - RIKEN cDNA 4930564C03 gene protein-coding 0.010000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3129 chr7 67551544 67551744 + -1.13907 NA intron (NM_175124, intron 6 of 9) intron (NM_175124, intron 6 of 9) 93592 NR_028143 67867 Mm.31247 NM_027413 ENSMUSG00000030556 Lrrc28 1300004K21Rik|2210012C09Rik|2310058O11Rik leucine rich repeat containing 28 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3051 chr6 110146035 110146235 + -1.13907 NA Intergenic MLTR11B|LTR|ERVK -499377 NM_001346640 108073 Mm.240881 NM_177328 ENSMUSG00000056755 Grm7 6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7 glutamate receptor, metabotropic 7 protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1928 chr2 3739813 3740013 + -1.13907 NA intron (NM_025626, intron 1 of 3) intron (NM_025626, intron 1 of 3) 26455 NM_025626 66540 Mm.277864 NM_025626 ENSMUSG00000026655 Fam107b 3110001A13Rik|AA589595|AA959793|AI132312 family with sequence similarity 107, member B protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3551 chr9 61753583 61753783 + -1.13907 NA Intergenic Intergenic 160827 NM_018853 56040 Mm.3158 NM_018853 ENSMUSG00000007892 Rplp1 2410042H16Rik|Arpp1|C430017H15Rik ribosomal protein, large, P1 protein-coding 0.015000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3215 chr7 117348028 117348228 + -1.13907 NA Intergenic Intergenic -32851 NM_175645 233781 Mm.461427 NM_175645 ENSMUSG00000030657 Xylt1 8030490L12 xylosyltransferase 1 protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-372 chr10 26454882 26455082 + -1.13907 NA Intergenic L1_Mur3|LINE|L1 -79763 NM_172787 237339 Mm.338439 NM_172787 ENSMUSG00000039089 L3mbtl3 AI481284|MBT-1 L3MBTL3 histone methyl-lysine binding protein protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3192 chr7 101750604 101750804 + -1.13907 NA intron (NM_001363991, intron 5 of 16) intron (NM_001363991, intron 5 of 16) -67609 NM_008887 11859 Mm.5028 NM_008887 ENSMUSG00000007946 Phox2a Arix|Phox2|Pmx2|Pmx2a|Px2a paired-like homeobox 2a protein-coding 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1358 chr15 79104977 79105177 + -1.13907 NA Intergenic B4A|SINE|B4 -3906 NM_177461 27008 Mm.196480 NM_177461 ENSMUSG00000033039 Micall1 AI448246|D15Mit260|D15N2e|EST573322|EST820961|MIRab13|mKIAA1668 microtubule associated monooxygenase, calponin and LIM domain containing -like 1 protein-coding 0.025000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2454 chr3 136790525 136790725 + -1.13907 NA intron (NM_001293622, intron 1 of 12) intron (NM_001293622, intron 1 of 12) 120559 NM_008913 19055 Mm.331389 NM_008913 ENSMUSG00000028161 Ppp3ca 2900074D19Rik|CN|Caln|Calna|CnA protein phosphatase 3, catalytic subunit, alpha isoform protein-coding 0.010000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3190 chr7 101043900 101044100 + -1.13907 NA Intergenic MER53|DNA|hAT -31947 NM_001302346 18442 Mm.3000 NM_008773 ENSMUSG00000032860 P2ry2 P2U1|P2Y2 purinergic receptor P2Y, G-protein coupled 2 protein-coding 0.010000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2447 chr3 133626566 133626766 + -1.13907 NA Intergenic Intergenic -82276 NM_001040400 214133 Mm.347816 NM_145989 ENSMUSG00000040943 Tet2 Ayu17-449|E130014J05Rik|mKIAA1546 tet methylcytosine dioxygenase 2 protein-coding 0.000000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-546 chr8 121461358 121461558 + -1.13907 NA Intergenic Intergenic 80496 NM_001357259 76405 Mm.165697 NM_029597 ENSMUSG00000031809 1700018B08Rik 1700084O22Rik RIKEN cDNA 1700018B08 gene protein-coding 0.010000 0.592040 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2528 chr4 22135143 22135343 + -1.13907 NA Intergenic Intergenic 203917 NM_175234 76132 Mm.159689 NM_175234 ENSMUSG00000028246 Faxc 6230409E13Rik|AW742931 failed axon connections homolog protein-coding 0.010000 0.358209 -23(ATTTCCATAACCAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3457 chr8 121461362 121461562 + -1.13907 NA Intergenic Intergenic 80492 NM_001357259 76405 Mm.165697 NM_029597 ENSMUSG00000031809 1700018B08Rik 1700084O22Rik RIKEN cDNA 1700018B08 gene protein-coding 0.010000 0.587065 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2488 chr3 150172182 150172382 + -1.13907 NA Intergenic Intergenic 851580 NR_039540 100628568 NR_039540 ENSMUSG00000092830 Mir3963 mmu-mir-3963|mu-mir-3963 microRNA 3963 ncRNA 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-944 chr13 38810287 38810487 + -1.13915 NA Intergenic Intergenic 150150 NM_134060 108652 Mm.255506 NM_134060 ENSMUSG00000021432 Slc35b3 4921526O06Rik|AI428480|CGI-19|PABST2|PAPST2 solute carrier family 35, member B3 protein-coding 0.005000 0.407960 30(TCTGCATTTGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1466 chr16 47505182 47505382 + -1.13938 NA Intergenic MTD|LTR|ERVL-MaLR 653217 NR_152166 619300 Mm.384092 NR_152166 6430553K19Rik - RIKEN cDNA 6430553K19 gene ncRNA 0.000000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1799 chr18 75193855 75194055 + -1.13938 NA intron (NM_027727, intron 13 of 16) intron (NM_027727, intron 13 of 16) 103362 NR_045394 100503117 Mm.250517 NR_045393 ENSMUSG00000102047 2010010A06Rik 5033420E22Rik RIKEN cDNA 2010010A06 gene ncRNA 0.015000 0.552239 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-394 chr4 16170058 16170258 + -1.13938 NA intron (NR_045765, intron 1 of 6) intron (NR_045765, intron 1 of 6) 6048 NR_045765 100415915 Mm.387180 NR_045765 ENSMUSG00000085112 A530072M11Rik - RIKEN cDNA gene A530072M11 ncRNA 0.005000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-184 chr14 110511007 110511207 + -1.14089 NA Intergenic RLTR16B_MM|LTR|ERVK 244042 NM_175499 239250 Mm.49728 NM_175499 ENSMUSG00000045871 Slitrk6 4832410J21Rik|Sltk6 SLIT and NTRK-like family, member 6 protein-coding 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1443 chr16 29972741 29972941 + -1.14089 NA intron (NR_037689, intron 1 of 5) MIRb|SINE|MIR 6283 NR_037689 328657 Mm.425982 NM_001033403 ENSMUSG00000075286 Gm1968 - predicted gene 1968 ncRNA 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-568 chr11 19986401 19986601 + -1.14188 NA intron (NM_033523, intron 1 of 5) intron (NM_033523, intron 1 of 5) 62059 NM_033523 114716 Mm.266627 NM_033523 ENSMUSG00000045671 Spred2 C79158 sprouty-related EVH1 domain containing 2 protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1634 chr17 69260908 69261108 + -1.14188 NA intron (NM_001355735, intron 11 of 22) intron (NM_001355735, intron 11 of 22) 16198 NR_045428 69750 Mm.439063 NR_045428 ENSMUSG00000100572 2410021H03Rik - RIKEN cDNA 2410021H03 gene ncRNA 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1065 chr14 13551850 13552050 + -1.14188 NA intron (NM_028052, intron 3 of 5) intron (NM_028052, intron 3 of 5) 97992 NM_001163032 72003 Mm.317515 NM_028052 ENSMUSG00000056296 Synpr 1500003F20Rik|SPO synaptoporin protein-coding 0.005000 0.373134 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-443 chr5 88851591 88851791 + -1.14188 NA Intergenic Intergenic -35569 NM_018760 54403 Mm.41044 NM_018760 ENSMUSG00000060961 Slc4a4 AI835705|NBC|NBC1 solute carrier family 4 (anion exchanger), member 4 protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1252 chr15 12350040 12350240 + -1.14188 NA 3' UTR (NM_025673, exon 4 of 4) 3' UTR (NM_025673, exon 4 of 4) 28644 NM_025673 66629 Mm.157655 NM_025673 ENSMUSG00000022200 Golph3 4733401N08Rik|5730410D03Rik|AW413496 golgi phosphoprotein 3 protein-coding 0.010000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1066 chr14 13552242 13552442 + -1.14188 NA intron (NM_028052, intron 3 of 5) intron (NM_028052, intron 3 of 5) 98384 NM_001163032 72003 Mm.317515 NM_028052 ENSMUSG00000056296 Synpr 1500003F20Rik|SPO synaptoporin protein-coding 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-401 chr10 44755373 44755573 + -1.14420 NA Intergenic Intergenic -296725 NM_007548 12142 Mm.4800 NM_007548 ENSMUSG00000038151 Prdm1 Blimp-1|Blimp1|PRDI-BF1|ZNFPR1A1|b2b1765Clo PR domain containing 1, with ZNF domain protein-coding 0.010000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-896 chr13 13645119 13645319 + -1.14462 NA intron (NM_010748, intron 10 of 52) L1MC3|LINE|L1 54810 NM_010748 17101 Mm.342337 NM_010748 ENSMUSG00000019726 Lyst D13Sfk13|beige|bg lysosomal trafficking regulator protein-coding 0.015000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-853 chr12 97024967 97025167 + -1.14462 NA Intergenic Intergenic -977845 NR_103800 69423 Mm.46121 NM_027076 1700019M22Rik - NFX-like protein pseudo 0.000000 0.353234 -70(CATGCATTTTATATG,-,0.00) -84(CATGAATTTTTATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1126 chr14 61137470 61137670 + -1.14462 NA promoter-TSS (NM_015788) promoter-TSS (NM_015788) -887 NM_015788 50720 Mm.440703 NM_015788 ENSMUSG00000048279 Sacs A230052M14|DNAJC29|E130115J16Rik sacsin protein-coding 0.015000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-813 chr12 66591875 66592075 + -1.14462 NA intron (NM_001193266, intron 8 of 16) intron (NM_001193266, intron 8 of 16) -307574 NM_001162933 238217 Mm.188575 NM_001162933 ENSMUSG00000060499 Rpl10l EG238217 ribosomal protein L10-like protein-coding 0.000000 0.378109 54(CTTTGCATAACACTAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1217 chr14 117453653 117453853 + -1.14462 NA intron (NM_001079844, intron 3 of 9) intron (NM_001079844, intron 3 of 9) 500094 NR_105747 102465148 NR_105747 ENSMUSG00000098648 Mir6239 Gm28025|mmu-mir-6239 microRNA 6239 ncRNA 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3464 chr8 126083978 126084178 + -1.14462 NA Intergenic RLTR13G|LTR|ERVK -55047 NM_001363500 210027 Mm.405238 NM_175434 ENSMUSG00000057060 Slc35f3 B230375D17Rik solute carrier family 35, member F3 protein-coding 0.015000 0.407960 -76(CTCTTATAATGCTAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-104 chr11 84113465 84113665 + -1.14462 NA intron (NM_172562, intron 4 of 15) intron (NM_172562, intron 4 of 15) 16003 NM_172562 217031 Mm.45159 NM_172562 ENSMUSG00000018651 Tada2a AV319371|D030022J10Rik|Tada2l transcriptional adaptor 2A protein-coding 0.015000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3020 chr6 88971863 88972063 + -1.14462 NA Intergenic Intergenic 69712 NM_011906 24100 Mm.284480 NM_011906 ENSMUSG00000002871 Tpra1 40kDa|Gpr175|Tpra40 transmembrane protein, adipocyte asscociated 1 protein-coding 0.030000 0.587065 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3328 chr8 43756783 43756983 + -1.14462 NA Intergenic Lx9|LINE|L1 -57392 NM_001079931 384814 Mm.491652 NM_001079931 Gm5347 EG384814 predicted gene 5347 protein-coding 0.010000 0.398010 -46(ATTACCATGTCAAAGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3447 chr8 113804043 113804243 + -1.14462 NA intron (NM_172466, intron 3 of 22) intron (NM_172466, intron 3 of 22) 44696 NM_172466 208936 Mm.167471 NM_172466 ENSMUSG00000053399 Adamts18 9630038L21|ADAMTS21|E130314N14Rik a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18 protein-coding 0.005000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-574 chr11 22200421 22200621 + -1.14462 NA intron (NM_153078, intron 5 of 24) intron (NM_153078, intron 5 of 24) 86274 NM_001252515 216565 Mm.491265 NM_153078 ENSMUSG00000042302 Ehbp1 AF424697|Flj21950|NACSIN EH domain binding protein 1 protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3540 chr9 51058904 51059104 + -1.14462 NA intron (NM_001033534, intron 7 of 7) intron (NM_001033534, intron 7 of 7) 18090 NM_001033534 244864 Mm.335152 NM_001033534 ENSMUSG00000060594 Layn E030012M19Rik|Gm511 layilin protein-coding 0.005000 0.393035 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-494 chr7 58411457 58411657 + -1.14462 NA Intergenic Intergenic -246645 NM_009728 11982 Mm.135129 NM_009728 ENSMUSG00000025324 Atp10a Atp10c|pfatp ATPase, class V, type 10A protein-coding 0.005000 0.462687 53(GCTTTCTCTTGCTTAG,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-396 chr4 48724729 48724929 + -1.14462 NA Intergenic Intergenic 61315 NM_026509 68016 Mm.133444 NM_026509 ENSMUSG00000028348 Cavin4 2310039E09Rik|Murc caveolae associated 4 protein-coding 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-207 chr1 119065323 119065523 + -1.14462 NA Intergenic Intergenic -11804 NM_001081125 14633 Mm.273292 NM_001081125 ENSMUSG00000048402 Gli2 - GLI-Kruppel family member GLI2 protein-coding 0.020000 0.601990 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-54 chr1 35647707 35647907 + -1.14462 NA Intergenic Intergenic -420593 NM_015818 50785 Mm.213566 NM_015818 ENSMUSG00000045216 Hs6st1 6Ost1 heparan sulfate 6-O-sulfotransferase 1 protein-coding 0.000000 0.383085 -53(CTTTCAAAAACAAATG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-126 chr12 97024911 97025111 + -1.14462 NA Intergenic Intergenic -977789 NR_103800 69423 Mm.46121 NM_027076 1700019M22Rik - NFX-like protein pseudo 0.000000 0.338308 -14(CATGCATTTTATATG,-,0.00) -28(CATGAATTTTTATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3767 chrX 159874601 159874801 + -1.14462 NA intron (NR_110969, intron 6 of 16) ORR1B1|LTR|ERVL-MaLR 34233 NM_001135728 58194 Mm.286495 NM_021389 ENSMUSG00000040990 Sh3kbp1 1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta SH3-domain kinase binding protein 1 protein-coding 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2771 chr5 48262499 48262699 + -1.14467 NA intron (NR_111900, intron 28 of 35) intron (NR_111900, intron 28 of 35) 38657 NR_029798 723822 NR_029798 ENSMUSG00000065603 Mir218-1 Mirn218-1|mir-218-1 microRNA 218-1 ncRNA 0.000000 0.343284 47(GTTAACAAAACAAAGG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-138 chr13 34441365 34441565 + -1.14467 NA Intergenic Intergenic -96283 NM_001033167 73102 Mm.23932 NM_001033167 ENSMUSG00000038267 Slc22a23 3110004L20Rik solute carrier family 22, member 23 protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-936 chr13 34441337 34441537 + -1.14467 NA Intergenic Intergenic -96255 NM_001033167 73102 Mm.23932 NM_001033167 ENSMUSG00000038267 Slc22a23 3110004L20Rik solute carrier family 22, member 23 protein-coding 0.005000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-931 chr13 31889023 31889223 + -1.14467 NA intron (NM_146041, intron 9 of 10) intron (NM_146041, intron 9 of 10) 82477 NM_008592 17300 Mm.12949 NM_008592 ENSMUSG00000050295 Foxc1 FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda forkhead box C1 protein-coding 0.000000 0.487562 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-330 chr2 114107847 114108047 + -1.14467 NA intron (NM_001290788, intron 32 of 33) intron (NM_001290788, intron 32 of 33) 42623 NR_105968 102465982 NR_105968 ENSMUSG00000098464 Mir7002 Gm27429|mmu-mir-7002 microRNA 7002 ncRNA 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2425 chr3 124565089 124565289 + -1.14467 NA TTS (NM_001368235) TTS (NM_001368235) 15902 NR_160692 384775 Mm.489851 NM_001368235 ENSMUSG00000039174 1700003H04Rik 4930538K10Rik|4933400D22Rik RIKEN cDNA 1700003H04 gene protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3631 chr9 102601859 102602059 + -1.14502 NA intron (NM_001301689, intron 10 of 14) ID_B1|SINE|B4 24165 NM_001081122 28135 Mm.38910 NM_001081122 ENSMUSG00000032534 Cep63 4921501M07|AL450317.13gm1|AW107703|CD20R|D9Mgc41|D9Mgc48e|ET2 centrosomal protein 63 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1587 chr17 26476453 26476653 + -1.14502 NA Intergenic Intergenic 31919 NM_013642 19252 Mm.239041 NM_013642 ENSMUSG00000024190 Dusp1 3CH134|MKP1|Ptpn16|U19515|erp|mkp-1 dual specificity phosphatase 1 protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3494 chr9 21978095 21978295 + -1.14502 NA intron (NM_023622, intron 9 of 18) intron (NM_023622, intron 9 of 18) 11258 NM_023622 71746 Mm.110594 NM_023622 ENSMUSG00000040146 Rgl3 1300003D20Rik|mFLJ00153 ral guanine nucleotide dissociation stimulator-like 3 protein-coding 0.010000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-619 chr11 51945605 51945805 + -1.14502 NA Intergenic Intergenic -21926 NM_029976 52626 Mm.289456 NM_029976 ENSMUSG00000020392 Cdkn2aipnl A430101B06Rik|AA409260|D11Ertd497e|MNCb-1520 CDKN2A interacting protein N-terminal like protein-coding 0.010000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-737 chr12 15602637 15602837 + -1.14502 NA Intergenic Intergenic 198364 NR_105809 102465204 NR_105809 ENSMUSG00000098480 Mir6387 Gm27281|mmu-mir-6387 microRNA 6387 ncRNA 0.005000 0.457711 16(GATGAATAATTCAGT,+,0.00),16(GATGAATAATTCAGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3474 chr9 5466480 5466680 + -1.14502 NA Intergenic L1_Mur3|LINE|L1 121104 NM_009808 12364 Mm.42163 NM_009808 ENSMUSG00000025887 Casp12 - caspase 12 protein-coding 0.005000 0.338308 -12(TTTGAATATTCATG,+,0.00),-12(TTTGAATATTCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2675 chr4 116378092 116378292 + -1.14502 NA intron (NM_001369062, intron 4 of 28) MER92-int|LTR|ERV1 85989 NM_008641 17776 Mm.9287 NM_008641 ENSMUSG00000003810 Mast2 MAST205|Mtssk microtubule associated serine/threonine kinase 2 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1440 chr16 25986087 25986287 + -1.14502 NA intron (NM_173379, intron 4 of 14) L1ME4b|LINE|L1 119626 NM_173379 210530 Mm.326869 NM_173379 ENSMUSG00000038168 P3h2 4832416N06|AW553532|Leprel1|Mlat4 prolyl 3-hydroxylase 2 protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3314 chr8 36668035 36668235 + -1.14502 NA intron (NM_001194940, intron 5 of 17) intron (NM_001194940, intron 5 of 17) -54192 NM_015802 50768 Mm.125155 NM_015802 ENSMUSG00000031523 Dlc1 A730069N07Rik|Arhgap7|HP|STARD12|dlc-1 deleted in liver cancer 1 protein-coding 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1127 chr14 62493535 62493735 + -1.14502 NA Intergenic Intergenic -37346 NM_172810 239134 Mm.236557 NM_172810 ENSMUSG00000021933 Gucy1b2 B930025B03|GC-SB2 guanylate cyclase 1, soluble, beta 2 protein-coding 0.020000 0.477612 -9(ATTTGACTGACAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-685 chr11 96969862 96970062 + -1.14502 NA intron (NM_001363225, intron 2 of 7) intron (NM_001363225, intron 2 of 7) -1297 NM_001363226 78912 Mm.491183 NM_030220 ENSMUSG00000018678 Sp2 4930480I16Rik|mKIAA0048 Sp2 transcription factor protein-coding 0.000000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1593 chr17 32082295 32082495 + -1.14502 NA intron (NR_027316, intron 5 of 8) intron (NR_027316, intron 5 of 8) 9028 NR_027316 435518 Mm.328944 NR_027316 ENSMUSG00000002791 Pdxk-ps Gm9743 pyridoxal (pyridoxine, vitamin B6) kinase, pseudogene pseudo 0.010000 0.592040 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3336 chr8 45650886 45651086 + -1.14502 NA intron (NM_001310707, intron 1 of 23) intron (NM_001310707, intron 1 of 23) -11007 NM_001310708 234214 Mm.211096 NM_172752 ENSMUSG00000031626 Sorbs2 2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2 sorbin and SH3 domain containing 2 protein-coding 0.015000 0.407960 -28(AATGAATATTCAAC,+,0.00),-28(AATGAATATTCAAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1115 chr14 56178886 56179086 + -1.14502 NA Intergenic Intergenic -4387 NM_001305808 245839 Mm.207063 NM_153052 ENSMUSG00000015443 Gzmn GrN granzyme N protein-coding 0.010000 0.567164 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1364 chr15 82767268 82767468 + -1.14502 NA Intergenic Intergenic -3246 NM_023623 71754 Mm.443024 NM_023623 ENSMUSG00000068083 Cyp2d40 1300013D18Rik|CYPIID3|P450-DB3 cytochrome P450, family 2, subfamily d, polypeptide 40 protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2379 chr3 109433979 109434179 + -1.14502 NA intron (NM_020505, intron 2 of 26) intron (NM_020505, intron 2 of 26) 93396 NM_020505 57257 Mm.282257 NM_020505 ENSMUSG00000033721 Vav3 A530094I06Rik|AA986410|Idd18.1 vav 3 oncogene protein-coding 0.000000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-562 chr11 18845437 18845637 + -1.14502 NA Intergenic L1MB7|LINE|L1 173432 NM_010789 17268 Mm.356578 NM_010789 ENSMUSG00000020160 Meis1 C530044H18Rik|Evi8 Meis homeobox 1 protein-coding 0.020000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3348 chr8 54441356 54441556 + -1.14502 NA Intergenic MTD|LTR|ERVL-MaLR 88542 NM_029701 76687 Mm.86437 NM_029701 ENSMUSG00000054408 Spcs3 1810011E08Rik|SPC22/23 signal peptidase complex subunit 3 homolog (S. cerevisiae) protein-coding 0.005000 0.338308 12(ATTAGCATAAAAATAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-220 chr1 127377096 127377296 + -1.14502 NA intron (NM_145128, intron 6 of 17) intron (NM_145128, intron 6 of 17) 172210 NM_145128 107895 Mm.214682 NM_145128 ENSMUSG00000036155 Mgat5 4930471A21Rik|5330407H02Rik|AI480971|GlcNAc-TV mannoside acetylglucosaminyltransferase 5 protein-coding 0.020000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2717 chr5 8011179 8011379 + -1.14502 NA Intergenic ORR1B1-int|LTR|ERVL-MaLR -34799 NM_025618 109552 Mm.96211 NM_025618 ENSMUSG00000003161 Sri 2210417O06Rik|2900070H08Rik|Sor sorcin protein-coding 0.005000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1069 chr14 14846008 14846208 + -1.14502 NA intron (NM_001195229, intron 9 of 34) intron (NM_001195229, intron 9 of 34) 25293 NM_001195229 674895 Mm.317563 NM_001034865 ENSMUSG00000042567 Nek10 Gm282 NIMA (never in mitosis gene a)- related kinase 10 protein-coding 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2509 chr4 6958487 6958687 + -1.14502 NA intron (NM_145711, intron 1 of 8) intron (NM_145711, intron 1 of 8) 32136 NM_145711 252838 Mm.435828 NM_145711 ENSMUSG00000041272 Tox 1700007F02Rik thymocyte selection-associated high mobility group box protein-coding 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3319 chr8 37893077 37893277 + -1.14502 NA intron (NM_145841, intron 2 of 7) intron (NM_145841, intron 2 of 7) 359025 NR_029884 723860 NR_029884 ENSMUSG00000065457 Mir383 Mirn383|mir-383|mmu-mir-383 microRNA 383 ncRNA 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3341 chr8 48152340 48152540 + -1.14502 NA Intergenic Intergenic 42427 NM_001161515 320685 Mm.121549 NM_178788 ENSMUSG00000031562 Dctd 6030466N05Rik dCMP deaminase protein-coding 0.025000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2773 chr5 48931983 48932183 + -1.14502 NA intron (NM_001199244, intron 1 of 7) intron (NM_001199244, intron 1 of 7) -42526 NM_030265 80334 Mm.160172 NM_030265 ENSMUSG00000029088 Kcnip4 AV032399|Calp|Calp250|KChIP4|KChIP4a Kv channel interacting protein 4 protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3179 chr7 93012386 93012586 + -1.14502 NA Intergenic Intergenic -67393 NM_021427 58238 Mm.113787 NM_021427 ENSMUSG00000051515 Fam181b A830059I20Rik|AB041569 family with sequence similarity 181, member B protein-coding 0.005000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-112 chr12 33286066 33286266 + -1.14697 NA Intergenic Intergenic -16349 NM_001033436 380753 Mm.41540 NM_028139 ENSMUSG00000020564 Atxn7l1 2810423G08Rik|Atxn7l4 ataxin 7-like 1 protein-coding 0.010000 0.537313 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-158 chr13 116405166 116405366 + -1.14782 NA Intergenic Lx2B|LINE|L1 -95578 NM_021459 16392 Mm.42242 NM_021459 ENSMUSG00000042258 Isl1 - ISL1 transcription factor, LIM/homeodomain protein-coding 0.005000 0.398010 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-233 chr16 75114712 75114912 + -1.14782 NA Intergenic Intergenic -22042 NM_001358493 268902 Mm.171736 NM_175549 ENSMUSG00000052516 Robo2 2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568 roundabout guidance receptor 2 protein-coding 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-887 chr13 8191950 8192150 + -1.14782 NA Intergenic Intergenic -10816 NM_052977 94191 Mm.425794 NM_052977 ENSMUSG00000052551 Adarb2 Adar3|RED2 adenosine deaminase, RNA-specific, B2 protein-coding 0.015000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2502 chr3 158864651 158864851 + -1.14782 NA Intergenic Intergenic -211613 NR_040750 624759 Mm.491054 NR_040750 ENSMUSG00000106053 Gm20752 - predicted gene, 20752 ncRNA 0.010000 0.318408 -94(TTATTGTCATCTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3491 chr9 20149907 20150107 + -1.14856 NA Intergenic RLTR13D3|LTR|ERVK 20887 NM_146557 258550 Mm.334988 NM_146557 ENSMUSG00000058491 Olfr869 MOR145-6 olfactory receptor 869 protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2917 chr6 6371858 6372058 + -1.15112 NA intron (NR_136905, intron 3 of 3) intron (NR_136905, intron 3 of 3) 123299 NR_136904 101056138 Mm.389085 NR_136904 ENSMUSG00000093482 Gm20619 - predicted gene 20619 ncRNA 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-800 chr12 56040679 56040879 + -1.15112 NA Intergenic Intergenic 204413 NR_155205 52592 Mm.24761 NM_027867 ENSMUSG00000012076 Brms1l 0710008O11Rik|AI159718|BRMS1|D12Ertd407e breast cancer metastasis-suppressor 1-like protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2385 chr3 112990696 112990896 + -1.15112 NA Intergenic L1_Mus1|LINE|L1 165931 NM_001190403 545562 Mm.462977 NM_001190403 Amy2b Amy-X|Amy2|Amy2-2|Amy2a|PA|mAmy2-1 amylase 2b protein-coding 0.005000 0.407960 -9(ATTTCCAATAAAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2049 chr2 82572190 82572390 + -1.15112 NA Intergenic RMER15|LTR|ERVL -180088 NR_152125 228116 Mm.246588 NR_152125 ENSMUSG00000087061 A130030D18Rik Gm558 RIKEN cDNA A130030D18 gene ncRNA 0.000000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2007 chr2 51772704 51772904 + -1.15112 NA Intergenic Intergenic -40795 NR_040639 433426 Mm.244381 NR_040639 ENSMUSG00000085014 Gm13490 - predicted gene 13490 ncRNA 0.015000 0.462687 -76(ATTACCAAGACAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1972 chr2 29553117 29553317 + -1.15112 NA Intergenic MTE2b|LTR|ERVL-MaLR -66503 NM_001039087 107746 Mm.298274 NM_054050 ENSMUSG00000039844 Rapgef1 4932418O06Rik|C3G|Grf2 Rap guanine nucleotide exchange factor (GEF) 1 protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1157 chr14 76922739 76922939 + -1.15112 NA Intergenic Intergenic 113778 NM_172488 210808 Mm.89278 NM_172488 ENSMUSG00000044350 Lacc1 9030625A04Rik laccase domain containing 1 protein-coding 0.010000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2765 chr5 42599797 42599997 + -1.15112 NA Intergenic MTD|LTR|ERVL-MaLR 531937 NR_131130 433882 Mm.319353 NR_131130 ENSMUSG00000067285 Gm16223 EG433882 predicted gene 16223 ncRNA 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-65 chr1 44721160 44721360 + -1.15112 NA intron (NM_028450, intron 3 of 10) intron (NM_028450, intron 3 of 10) 23689 NR_040602 75066 Mm.416932 NR_040602 ENSMUSG00000101701 4930521E06Rik - RIKEN cDNA 4930521E06 gene ncRNA 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2896 chr5 137425687 137425887 + -1.15112 NA intron (NM_011741, intron 39 of 87) intron (NM_011741, intron 39 of 87) 51277 NM_011741 22635 Mm.7984 NM_011741 ENSMUSG00000079173 Zan Zan-test zonadhesin protein-coding 0.010000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-631 chr11 59759626 59759826 + -1.15112 NA exon (NM_001368931, exon 16 of 24) exon (NM_001368931, exon 16 of 24) -19572 NR_045476 69320 Mm.443242 NR_045476 ENSMUSG00000086330 1700007J10Rik 4930573L17Rik RIKEN cDNA 1700007J10 gene ncRNA 0.000000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-317 chr1 189851902 189852102 + -1.15112 NA intron (NM_008976, intron 13 of 18) intron (NM_008976, intron 13 of 18) 70289 NM_026796 226830 Mm.156895 NM_026796 ENSMUSG00000026603 Smyd2 1110020E07Rik|4930402C15|KMT3C|Zmynd14 SET and MYND domain containing 2 protein-coding 0.005000 0.378109 -56(ATATACAAGACAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2983 chr6 60813593 60813793 + -1.15112 NA intron (NM_009221, intron 4 of 5) intron (NM_009221, intron 4 of 5) 15311 NM_001042451 20617 Mm.17484 NM_009221 ENSMUSG00000025889 Snca NACP|alpha-Syn|alphaSYN synuclein, alpha protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2485 chr3 149784362 149784562 + -1.15112 NA Intergenic Intergenic 509725 NR_040591 381482 Mm.393866 NR_040591 Gm1653 - predicted gene 1653 ncRNA 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-214 chr1 123579512 123579712 + -1.15112 NA intron (NM_199021, intron 5 of 25) intron (NM_199021, intron 5 of 25) 465947 NM_199021 269109 Mm.417716 NM_199021 ENSMUSG00000036815 Dpp10 6430601K09Rik|DPP X|Dprp3 dipeptidylpeptidase 10 protein-coding 0.000000 0.333333 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-559 chr9 58488379 58488579 + -1.15112 NA promoter-TSS (NM_176921) promoter-TSS (NM_176921) -124 NM_176921 319477 Mm.153674 NM_176921 ENSMUSG00000066607 Insyn1 6030419C18Rik inhibitory synaptic factor 1 protein-coding 0.110000 0.741294 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-427 chr5 25331856 25332056 + -1.15112 NA intron (NM_001081383, intron 27 of 58) L1MA4A|LINE|L1 85583 NM_001359890 231050 Mm.246718 NM_144908 ENSMUSG00000038072 Galnt11 A430075I06Rik|AI648252|E430002F06Rik polypeptide N-acetylgalactosaminyltransferase 11 protein-coding 0.005000 0.333333 -59(GTTTAAATGAAAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3547 chr9 59446536 59446736 + -1.15112 NA intron (NM_019927, intron 2 of 13) intron (NM_019927, intron 2 of 13) 35105 NR_045640 100504377 Mm.446631 NR_045640 Gm20199 - predicted gene, 20199 ncRNA 0.005000 0.328358 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-363 chr3 80206931 80207131 + -1.15112 NA Intergenic Intergenic 321101 NM_133187 68659 Mm.427274 NM_133187 ENSMUSG00000027955 Gask1b 1110032E23Rik|2210419I08Rik|AV011458|Ened|Fam198b|GaskbB golgi associated kinase 1B protein-coding 0.000000 0.338308 -6(ATTTGAAACACAATCC,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-214 chr15 71326709 71326909 + -1.15135 NA Intergenic Intergenic 401029 NM_177819 70363 Mm.126450 NM_177819 ENSMUSG00000036800 Fam135b 1700010C24Rik|A830008O07Rik family with sequence similarity 135, member B protein-coding 0.010000 0.427861 47(CTTCAATTATGTATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3384 chr8 78860673 78860873 + -1.15135 NA Intergenic Lx9|LINE|L1 -39621 NM_001191004 78651 Mm.28694 NM_030145 ENSMUSG00000031683 Lsm6 1500031N17Rik|2410088K19Rik|AI747288 LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated protein-coding 0.000000 0.333333 -74(ATTTGAAAGACAGCAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3292 chr8 22782658 22782858 + -1.15135 NA TTS (NM_008872) TTS (NM_008872) 22896 NM_001122820 64933 Mm.390023 NM_029505 ENSMUSG00000031539 Ap3m2 5830445E16Rik|AP-3B adaptor-related protein complex 3, mu 2 subunit protein-coding 0.000000 0.238806 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2033 chr2 68336274 68336474 + -1.15135 NA intron (NM_016866, intron 10 of 17) intron (NM_016866, intron 10 of 17) 135607 NM_016866 53416 Mm.198414 NM_016866 ENSMUSG00000027030 Stk39 AW227544|AW556857|DCHT|RF005|Rnl5|SPAK serine/threonine kinase 39 protein-coding 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2597 chr4 68536095 68536295 + -1.15135 NA Intergenic Intergenic -214234 NR_151548 102633975 NR_151548 Gm12911 - predicted gene 12911 ncRNA 0.010000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3405 chr8 89812356 89812556 + -1.15135 NA Intergenic Intergenic 535796 NM_172913 244579 Mm.302755 NM_172913 ENSMUSG00000043668 Tox3 500-9|BC052044|C230068E13|CAGF9|Tnrc9 TOX high mobility group box family member 3 protein-coding 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2644 chr4 95191789 95191989 + -1.15135 NA Intergenic Intergenic -139667 NM_010591 16476 Mm.275071 NM_010591 ENSMUSG00000052684 Jun AP-1|Junc|c-jun jun proto-oncogene protein-coding 0.015000 0.482587 2(ATTTGCGAAACAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1349 chr15 71326704 71326904 + -1.15135 NA Intergenic Intergenic 401034 NM_177819 70363 Mm.126450 NM_177819 ENSMUSG00000036800 Fam135b 1700010C24Rik|A830008O07Rik family with sequence similarity 135, member B protein-coding 0.010000 0.417910 52(CTTCAATTATGTATT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-550 chr9 6677574 6677774 + -1.15221 NA Intergenic Intergenic -411127 NM_027942 71829 Mm.141452 NM_027942 ENSMUSG00000047619 Ddi1 1700011N24Rik DNA-damage inducible 1 protein-coding 0.010000 0.427861 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-313 chr2 49537439 49537639 + -1.15221 NA intron (NM_172663, intron 10 of 13) intron (NM_172663, intron 10 of 13) -81747 NM_008449 16574 Mm.256342 NM_008449 ENSMUSG00000026764 Kif5c KINN|Khc|NKHC|NKHC2 kinesin family member 5C protein-coding 0.005000 0.293532 82(TCTTTTTCATTTTAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1999 chr2 49537399 49537599 + -1.15221 NA intron (NM_172663, intron 10 of 13) intron (NM_172663, intron 10 of 13) -81787 NM_008449 16574 Mm.256342 NM_008449 ENSMUSG00000026764 Kif5c KINN|Khc|NKHC|NKHC2 kinesin family member 5C protein-coding 0.005000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3025 chr6 92665762 92665962 + -1.15221 NA intron (NM_001081146, intron 2 of 8) intron (NM_001081146, intron 2 of 8) 40322 NM_001081146 243548 Mm.248820 NM_001081146 ENSMUSG00000030020 Prickle2 6230400G14Rik|6720451F06Rik|mpk2 prickle planar cell polarity protein 2 protein-coding 0.000000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3476 chr9 6677611 6677811 + -1.15221 NA Intergenic Intergenic -411164 NM_027942 71829 Mm.141452 NM_027942 ENSMUSG00000047619 Ddi1 1700011N24Rik DNA-damage inducible 1 protein-coding 0.005000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-201 chr15 44869656 44869856 + -1.15367 NA Intergenic MLT2F|LTR|ERVL -11638 NR_033609 239410 Mm.352401 NR_033609 ENSMUSG00000060530 A930017M01Rik Gm305 Smg-5 homolog, nonsense mediated mRNA decay factor pseudogene pseudo 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1306 chr15 44869651 44869851 + -1.15367 NA Intergenic MLT2F|LTR|ERVL -11643 NR_033609 239410 Mm.352401 NR_033609 ENSMUSG00000060530 A930017M01Rik Gm305 Smg-5 homolog, nonsense mediated mRNA decay factor pseudogene pseudo 0.005000 0.407960 -100(CTTTTTTCTTGGATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1978 chr2 36195217 36195417 + -1.15534 NA Intergenic Intergenic -35109 NM_008969 19224 Mm.275434 NM_008969 ENSMUSG00000047250 Ptgs1 COX1|Cox-1|Cox-3|PGHS-1|PHS 1|Pghs1 prostaglandin-endoperoxide synthase 1 protein-coding 0.000000 0.398010 30(CCTTAATATTCATG,+,0.00) 59(TTTTCAATGATAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2365 chr3 101162871 101163071 + -1.15534 NA Intergenic Intergenic -52805 NM_011197 19221 Mm.24807 NM_011197 ENSMUSG00000027864 Ptgfrn 4833445A08Rik|AU042434|CD9P-1|EWI-F|FPRP|Trim45 prostaglandin F2 receptor negative regulator protein-coding 0.025000 0.452736 9(CATGCATATGCATG,+,0.00),9(CATGCATATGCATG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-246 chr17 11141852 11142052 + -1.15534 NA intron (NM_016694, intron 2 of 11) intron (NM_016694, intron 2 of 11) 301593 NM_016694 50873 Mm.311110 NM_016694 ENSMUSG00000023826 Prkn Park2 parkin RBR E3 ubiquitin protein ligase protein-coding 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1496 chr16 64086035 64086235 + -1.15534 NA Intergenic Intergenic -221960 NM_001362452 13837 Mm.1977 NM_010140 ENSMUSG00000052504 Epha3 AW492086|Cek4|EK4|ETK1|End3|Hek|Hek4|Mek4|Tyro4 Eph receptor A3 protein-coding 0.000000 0.308458 -13(TCATTATCATTCAACT,+,0.00),48(ATTAACATGATAAGTT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3270 chr8 10023593 10023793 + -1.15534 NA intron (NM_033622, intron 4 of 6) intron (NM_033622, intron 4 of 6) 17060 NM_033622 24099 Mm.28835 NM_033622 ENSMUSG00000031497 Tnfsf13b BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4 tumor necrosis factor (ligand) superfamily, member 13b protein-coding 0.000000 0.437811 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-577 chrX 49993436 49993636 + -1.15534 NA Intergenic Intergenic 16699 NM_146390 258385 Mm.377470 NM_146390 ENSMUSG00000050504 Olfr1323 MOR216-1 olfactory receptor 1323 protein-coding 0.000000 0.298507 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1224 chr14 118856238 118856438 + -1.15534 NA intron (NM_001160099, intron 1 of 3) intron (NM_001160099, intron 1 of 3) 1388 NM_021386 58187 Mm.390755 NM_021386 ENSMUSG00000022132 Cldn10 6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e claudin 10 protein-coding 0.010000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-106 chr1 67429226 67429426 + -1.15534 NA Intergenic Intergenic 306299 NM_001080809 227231 Mm.343942 NM_001080809 ENSMUSG00000025991 Cps1 4732433M03Rik|CPS|D1Ucla3 carbamoyl-phosphate synthetase 1 protein-coding 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3694 chrX 49993459 49993659 + -1.15534 NA Intergenic Intergenic 16676 NM_146390 258385 Mm.377470 NM_146390 ENSMUSG00000050504 Olfr1323 MOR216-1 olfactory receptor 1323 protein-coding 0.000000 0.313433 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-442 chr5 81815667 81815867 + -1.15584 NA intron (NM_001359830, intron 25 of 25) intron (NM_001359830, intron 25 of 25) 308946 NR_138557 67327 Mm.87058 NR_138557 1700031L13Rik - RIKEN cDNA 1700031L13 gene ncRNA 0.000000 0.343284 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-197 chr15 26971243 26971443 + -1.15584 NA Intergenic Lx10|LINE|L1 -75779 NM_176959 448987 Mm.253378 NM_176959 ENSMUSG00000043556 Fbxl7 AL023057|D230018M15Rik|FBL7|Fbl6 F-box and leucine-rich repeat protein 7 protein-coding 0.015000 0.417910 58(CTATTTCTATGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-783 chr12 45792006 45792206 + -1.15662 NA Intergenic Intergenic -717623 NM_144552 217517 Mm.285400 NM_144552 ENSMUSG00000046314 Stxbp6 BC024598|C85317 syntaxin binding protein 6 (amisyn) protein-coding 0.000000 0.338308 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-445 chr5 96662345 96662545 + -1.15662 NA intron (NM_175473, intron 29 of 73) intron (NM_175473, intron 29 of 73) -130940 NM_013470 11745 Mm.7214 NM_013470 ENSMUSG00000029484 Anxa3 Anx3 annexin A3 protein-coding 0.000000 0.383085 -30(AATGAATGATGCATA,+,0.00),-30(AATGAATGATGCATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-59 chr1 41447148 41447348 + -1.15706 NA Intergenic Intergenic -265996 NR_040475 74897 Mm.243822 NR_040475 ENSMUSG00000104072 4930448I06Rik - RIKEN cDNA 4930448I06 gene ncRNA 0.000000 0.343284 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-488 chr6 147140799 147140999 + -1.15706 NA Intergenic Intergenic -39342 NR_033640 100039641 Mm.170402 NR_033640 ENSMUSG00000085600 E330012B07Rik Gm15768 RIKEN cDNA E330012B07 gene ncRNA 0.010000 0.383085 76(TTATGAAAGACAAAAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3573 chr9 77570618 77570818 + -1.15877 NA Intergenic RSINE1|SINE|B4 -25866 NM_001146048 214345 Mm.28534 NM_172528 ENSMUSG00000032352 Lrrc1 A430093J20Rik|AU016091|D030059I21|mKIAA4018 leucine rich repeat containing 1 protein-coding 0.010000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-70 chr1 49838076 49838276 + -1.15877 NA Intergenic MTE2b|LTR|ERVL-MaLR 593560 NR_151585 442837 Mm.337149 NM_001002792 ENSMUSG00000051616 C230029F24Rik - RIKEN cDNA C230029F24 gene ncRNA 0.005000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1420 chr16 15491622 15491822 + -1.15877 NA Intergenic L1MC3|LINE|L1 102796 NM_001159351 70620 Mm.235407 NM_023585 ENSMUSG00000022674 Ube2v2 1110021H13Rik|4632410D19Rik|5730524P06Rik|6820402M05|AI848315|C81524|MMS2 ubiquitin-conjugating enzyme E2 variant 2 protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3545 chr9 56368803 56369003 + -1.15877 NA intron (NM_172924, intron 2 of 6) intron (NM_172924, intron 2 of 6) 49147 NM_172924 244895 Mm.490331 NM_172924 ENSMUSG00000074305 Peak1 1110049L02Rik|9530046P14|AA690169|BE132841|C230081A13Rik|SGK269|mKIAA2002 pseudopodium-enriched atypical kinase 1 protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-146 chr1 81486642 81486842 + -1.15877 NA Intergenic Intergenic 409335 NM_001356397 241134 Mm.313904 NM_172849 ENSMUSG00000054976 Nyap2 9430031J16Rik|Jr6|Kiaa1486 neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 protein-coding 0.000000 0.323383 17(ATTAGAATAACAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-329 chr10 5830450 5830650 + -1.15877 NA 3' UTR (NM_019958, exon 5 of 5) 3' UTR (NM_019958, exon 5 of 5) -6607 NM_175374 108853 Mm.55082 NM_175374 ENSMUSG00000019774 Mtrf1l 9130004K12Rik mitochondrial translational release factor 1-like protein-coding 0.015000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1235 chr14 124635197 124635397 + -1.15877 NA intron (NM_207667, intron 1 of 4) ORR1B2-int|LTR|ERVL-MaLR 41830 NM_207667 14169 Mm.206362 NM_010201 ENSMUSG00000025551 Fgf14 FHF-4|Fhf4|Tg(tetO-MAPT*P301L)4510Kha|mFHF-4(1B) fibroblast growth factor 14 protein-coding 0.010000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-526 chr10 119533608 119533808 + -1.15877 NA intron (NM_133442, intron 1 of 21) intron (NM_133442, intron 1 of 21) 79674 NM_001277293 74053 Mm.196692 NM_028736 ENSMUSG00000034813 Grip1 4931400F03Rik|GRIP|eb glutamate receptor interacting protein 1 protein-coding 0.015000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2871 chr5 115901103 115901303 + -1.15877 NA intron (NM_007708, intron 8 of 46) intron (NM_007708, intron 8 of 46) 55547 NM_007708 12704 Mm.8321 NM_007708 ENSMUSG00000029516 Cit C030025P15Rik|CRIK|CRIK-SK|Cit-k citron protein-coding 0.030000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-479 chr10 91825468 91825668 + -1.15877 NA Intergenic Intergenic -63261 NR_152729 102633867 Mm.351514 NR_152729 ENSMUSG00000111657 Gm31592 - predicted gene, 31592 ncRNA 0.005000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2266 chr3 52669827 52670027 + -1.15877 NA Intergenic Intergenic -69797 NR_038079 329639 Mm.131245 NR_038079 ENSMUSG00000102785 Gm2447 100039832|A530017F20 predicted gene 2447 ncRNA 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-757 chr12 31281427 31281627 + -1.15877 NA intron (NM_008482, intron 6 of 32) intron (NM_008482, intron 6 of 32) 16234 NM_008482 16777 Mm.172674 NM_008482 ENSMUSG00000002900 Lamb1 C77966|C80098|C81607|D130003D08Rik|Lamb-1|Lamb1-1 laminin B1 protein-coding 0.030000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3247 chr7 136152594 136152794 + -1.15877 NA Intergenic Intergenic -115630 NR_102277 77383 Mm.227745 NR_102277 ENSMUSG00000110027 C030029H02Rik - RIKEN cDNA C030029H02 gene ncRNA 0.015000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1721 chr18 31999214 31999414 + -1.15877 NA intron (NM_032394, intron 12 of 46) intron (NM_032394, intron 12 of 46) 37617 NM_032394 17922 Mm.440013 NM_032394 ENSMUSG00000024388 Myo7b - myosin VIIB protein-coding 0.025000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2335 chr3 83607942 83608142 + -1.15877 NA Intergenic Intergenic -33924 NR_036591 69460 Mm.389464 NR_036591 ENSMUSG00000101334 1700028M03Rik - RIKEN cDNA 1700028M03 gene ncRNA 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2463 chr3 140104503 140104703 + -1.15877 NA Intergenic Intergenic 76354 NR_105798 102465198 NR_105798 ENSMUSG00000099169 Mir7j Gm27716|Mirlet7j|mmu-let-7j microRNA 7j ncRNA 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3442 chr8 112411325 112411525 + -1.15877 NA Intergenic Intergenic 158150 NR_132433 102640845 Mm.405615 NR_132433 ENSMUSG00000098075 Gm26994 - predicted gene, 26994 ncRNA 0.020000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1022 chr13 101879720 101879920 + -1.15877 NA Intergenic Intergenic -111603 NM_001077495 18708 Mm.259333 NM_001024955 ENSMUSG00000041417 Pik3r1 PI3K|p50alpha|p55alpha|p85alpha phosphoinositide-3-kinase regulatory subunit 1 protein-coding 0.020000 0.442786 -96(GTTTTGTCATGGTTAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-678 chr11 91530831 91531031 + -1.15909 NA Intergenic Intergenic 46624 NM_028547 73470 Mm.67677 NM_028547 ENSMUSG00000046755 Kif2b 1700063D03Rik kinesin family member 2B protein-coding 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2085 chr2 108605981 108606181 + -1.15909 NA Intergenic Intergenic 672209 NM_029790 76894 Mm.330451 NM_029790 ENSMUSG00000057234 Mettl15 0610027B03Rik|AI303697|AW049952|Mett5d1 methyltransferase like 15 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1680 chr18 11633999 11634199 + -1.15909 NA intron (NR_045527, intron 1 of 17) intron (NR_045527, intron 1 of 17) 823 NR_045527 225182 Mm.154275 NM_175458 ENSMUSG00000041238 Rbbp8 9930104E21Rik|CtIP|RBBP-8|RIM|SAE2 retinoblastoma binding protein 8, endonuclease protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-324 chr10 3476774 3476974 + -1.15909 NA Intergenic Intergenic -63400 NM_027391 70337 Mm.24153 NM_027391 ENSMUSG00000019762 Iyd 0610009A07Rik|AI265638|Dehal1|IYD-1 iodotyrosine deiodinase protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-156 chr1 87885546 87885746 + -1.15909 NA intron (NM_177646, intron 3 of 29) ORR1C2|LTR|ERVL-MaLR -31347 NR_136921 100503175 Mm.426422 NR_136921 ENSMUSG00000101942 Gm19582 - predicted gene, 19582 ncRNA 0.000000 0.437811 52(CCATTCTCATTCAGAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-445 chr10 69786656 69786856 + -1.15909 NA intron (NM_170730, intron 1 of 17) intron (NM_170730, intron 1 of 17) -138776 NM_170687 11735 Mm.235960 NM_009670 ENSMUSG00000069601 Ank3 2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G ankyrin 3, epithelial protein-coding 0.020000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3636 chr9 104555367 104555567 + -1.15909 NA Intergenic RSINE1|SINE|B4 -11209 NM_001357439 74020 Mm.326240 NM_028719 ENSMUSG00000032564 Cpne4 3632411M23Rik|4933406O10Rik copine IV protein-coding 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-415 chr10 53329938 53330138 + -1.15909 NA intron (NM_001204983, intron 3 of 12) Lx9|LINE|L1 -7648 NM_023129 18821 Mm.34145 NM_023129 ENSMUSG00000038583 Pln Plb phospholamban protein-coding 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1176 chr14 89262029 89262229 + -1.15909 NA Intergenic Lx|LINE|L1 -634095 NR_002862 328451 Mm.320571 NR_002862 Gm5088 EG328451|Pabpc4l poly(A)-binding protein, cytoplasmic pseudogene pseudo 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2394 chr3 116194818 116195018 + -1.15909 NA Intergenic Intergenic 58566 NM_022427 64378 Mm.40025 NM_022427 ENSMUSG00000068696 Gpr88 AW061286|Strg G-protein coupled receptor 88 protein-coding 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-655 chr11 69715705 69715905 + -1.15909 NA Intergenic Intergenic -19707 NM_001034097 619441 Mm.8983 NM_001034097 ENSMUSG00000018752 Tnfsfm13 Tnfsf12-Tnfsf13|Tnfsf12Tnfsf13|Tnfsf12tnfsf13|Twe-pril tumor necrosis factor (ligand) superfamily, membrane-bound member 13 protein-coding 0.015000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1653 chr17 81250304 81250504 + -1.15909 NA Intergenic Lx5|LINE|L1 -185319 NM_028138 72167 Mm.273257 NM_028138 ENSMUSG00000024246 Thumpd2 2810025A12Rik THUMP domain containing 2 protein-coding 0.005000 0.268657 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1865 chr19 28452793 28452993 + -1.15909 NA intron (NM_175459, intron 4 of 10) intron (NM_175459, intron 4 of 10) -225331 NR_045330 320176 Mm.406716 NR_045330 ENSMUSG00000097735 D930032P07Rik - RIKEN cDNA D930032P07 gene ncRNA 0.015000 0.383085 18(ATATTCTAATTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-866 chr12 104190799 104190999 + -1.15909 NA Intergenic L2a|LINE|L2 -23555 NM_009251 20715 Mm.312628 NM_009251 Serpina3g 2A2|AI119734|Spi2-1|Spi2/eb.1|Spi2A|spi2 serine (or cysteine) peptidase inhibitor, clade A, member 3G protein-coding 0.000000 0.398010 52(AATGAATGATTGATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3735 chrX 117986063 117986263 + -1.15909 NA Intergenic Intergenic -441064 NM_001142750 100039551 Mm.272850 NM_001142750 ENSMUSG00000100194 Tgif2lx2 - TGFB-induced factor homeobox 2-like, X-linked 2 protein-coding 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2344 chr3 90568817 90569017 + -1.15909 NA Intergenic MLT1K|LTR|ERVL-MaLR -15742 NM_001355597 20197 Mm.440044 NM_011310 ENSMUSG00000001021 S100a3 S100E S100 calcium binding protein A3 protein-coding 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3559 chr9 67003220 67003420 + -1.15909 NA Intergenic Intergenic -27836 NM_030717 80907 Mm.157882 NM_030717 ENSMUSG00000032370 Lactb LACT-1|Lact1|Mrpl56 lactamase, beta protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-703 chr11 107606768 107606968 + -1.15909 NA intron (NM_001368755, intron 12 of 32) intron (NM_001368755, intron 12 of 32) -30854 NR_105897 102465562 NR_105897 ENSMUSG00000098497 Mir6932 Gm27691|mmu-mir-6932 microRNA 6932 ncRNA 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-547 chr11 7534751 7534951 + -1.15909 NA Intergenic RMER10A|LTR|ERVL -320928 NM_008343 16009 Mm.29254 NM_008343 ENSMUSG00000020427 Igfbp3 AI649005|IGFBP-3|IGgfbp3 insulin-like growth factor binding protein 3 protein-coding 0.005000 0.482587 -18(GCTTTGGTATGTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2436 chr3 127415181 127415381 + -1.15909 NA intron (NM_001327938, intron 1 of 47) ORR1C1|LTR|ERVL-MaLR -6223 NM_001327939 109676 Mm.220242 NM_178655 ENSMUSG00000032826 Ank2 100043364|AI835472|AW491075|Ank-2|Gm4392 ankyrin 2, brain protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1838 chr19 12820322 12820522 + -1.15909 NA intron (NM_134152, intron 4 of 8) intron (NM_134152, intron 4 of 8) 21843 NM_134152 107321 Mm.313136 NM_134152 ENSMUSG00000024696 Lpxn 4933402K05Rik|A530083L21Rik|AV278559|LDPL leupaxin protein-coding 0.005000 0.263682 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-439 chr10 64836199 64836399 + -1.15909 NA intron (NM_177612, intron 14 of 17) intron (NM_177612, intron 14 of 17) 284068 NR_152621 102632700 NR_152621 ENSMUSG00000100528 Gm28881 - predicted gene 28881 ncRNA 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-388 chr10 33557941 33558141 + -1.15909 NA intron (NM_001359139, intron 2 of 4) intron (NM_001359139, intron 2 of 4) -66205 NR_152723 102632938 Mm.417656 NR_152723 ENSMUSG00000090087 Gm15939 - predicted gene 15939 ncRNA 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2402 chr3 118269532 118269732 + -1.15909 NA Intergenic Intergenic -164225 NR_029551 387155 NR_029551 ENSMUSG00000065569 Mir137 Mirn137|mir-137|mmu-mir-137 microRNA 137 ncRNA 0.000000 0.338308 -53(GTTTTCCCATGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-434 chr10 62138079 62138279 + -1.15909 NA Intergenic Intergenic 5089 NM_009719 11925 Mm.57236 NM_009719 ENSMUSG00000044312 Neurog3 Atoh5|Math4B|bHLHa7|ngn3 neurogenin 3 protein-coding 0.010000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3510 chr9 31801820 31802020 + -1.15909 NA Intergenic L1_Mur3|LINE|L1 111365 NM_013800 12023 Mm.261044 NM_013800 ENSMUSG00000032033 Barx2 2310006E12Rik|Barx2b BarH-like homeobox 2 protein-coding 0.010000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-224 chr1 130684688 130684888 + -1.15909 NA Intergenic ORR1A4|LTR|ERVL-MaLR -3217 NR_028304 12270 Mm.380517 NR_028304 C4bp-ps1 C4bpb complement component 4 binding protein, pseudogene 1 pseudo 0.005000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2228 chr3 22492777 22492977 + -1.15909 NA Intergenic Intergenic 241507 NR_004439 19784 NR_004439 Rprl2 RPRH3|Rmrp3 ribonuclease P RNA-like 2 ncRNA 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1872 chr19 31442400 31442600 + -1.15909 NA intron (NM_001013833, intron 2 of 17) intron (NM_001013833, intron 2 of 17) 221870 NM_011160 19091 Mm.381170 NM_011160 ENSMUSG00000052920 Prkg1 AW125416|CGKI|Gm19690|Prkg1b|Prkgr1b protein kinase, cGMP-dependent, type I protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-559 chr11 17738176 17738376 + -1.15909 NA Intergenic Intergenic 215599 NM_001362970 68145 Mm.178684 NM_026576 ENSMUSG00000016984 Etaa1 5730466H23Rik|AA672646 Ewing tumor-associated antigen 1 protein-coding 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2702 chr4 140172969 140173169 + -1.15909 NA intron (NM_198610, intron 1 of 9) intron (NM_198610, intron 1 of 9) 30196 NR_153821 102636673 Mm.449180 NR_153821 Gm13029 Gm33676 predicted gene 13029 ncRNA 0.030000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3255 chr7 138231935 138232135 + -1.15909 NA intron (NM_183289, intron 8 of 11) intron (NM_183289, intron 8 of 11) 165695 NM_183289 70571 Mm.334297 NM_183289 ENSMUSG00000091002 Tcerg1l 5730476P14Rik transcription elongation regulator 1-like protein-coding 0.000000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3707 chrX 60299753 60299953 + -1.15909 NA intron (NM_001001798, intron 5 of 28) L1_Mur2|LINE|L1 94639 NR_030499 751545 NR_030499 ENSMUSG00000070081 Mir505 Mirn505|mir-505|mmu-mir-505 microRNA 505 ncRNA 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1601 chr17 36788787 36788987 + -1.15909 NA Intergenic LTR41|LTR|ERVL 15977 NM_177637 224761 Mm.246584 NM_177637 ENSMUSG00000037246 H2-M10.5 6.9H histocompatibility 2, M region locus 10.5 protein-coding 0.000000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2493 chr3 152551311 152551511 + -1.15909 NA intron (NM_001081277, intron 6 of 13) intron (NM_001081277, intron 6 of 13) -115502 NR_040386 99542 Mm.394921 NR_040386 ENSMUSG00000097745 AI115009 - expressed sequence AI115009 ncRNA 0.005000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2421 chr3 124310026 124310226 + -1.15909 NA Intergenic Intergenic -10911 NM_146140 229801 Mm.165810 NM_146140 ENSMUSG00000044528 Tram1l1 A830091N21Rik translocation associated membrane protein 1-like 1 protein-coding 0.015000 0.283582 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-102 chr1 65269920 65270120 + -1.15909 NA intron (NM_011086, intron 38 of 41) intron (NM_011086, intron 38 of 41) -41237 NM_139270 213527 Mm.294225 NM_139270 ENSMUSG00000025946 Pth2r Pthr2 parathyroid hormone 2 receptor protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2445 chr3 133437883 133438083 + -1.15909 NA Intergenic RLTR13B2|LTR|ERVK 106407 NM_001346736 214133 Mm.347816 NM_145989 ENSMUSG00000040943 Tet2 Ayu17-449|E130014J05Rik|mKIAA1546 tet methylcytosine dioxygenase 2 protein-coding 0.015000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-770 chr12 39699869 39700069 + -1.15916 NA Intergenic Intergenic 337407 NM_007487 11861 Mm.12723 NM_007487 ENSMUSG00000047446 Arl4a AI467555|Arl4 ADP-ribosylation factor-like 4A protein-coding 0.000000 0.348259 -52(CCATTGTGATGGTAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2768 chr5 43555067 43555267 + -1.15916 NA intron (NM_001135172, intron 1 of 2) intron (NM_001135172, intron 1 of 2) 39598 NM_001135172 109323 Mm.275553 NM_175425 ENSMUSG00000061535 C1qtnf7 5530401N20Rik|8430425G24Rik|Adig|Ctrp7 C1q and tumor necrosis factor related protein 7 protein-coding 0.000000 0.442786 -4(TCATTGTCTTTCAATT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-131 chr13 15828596 15828796 + -1.15916 NA intron (NR_155430, intron 3 of 3) intron (NR_155430, intron 3 of 3) 21453 NR_046131 328190 Mm.446957 NR_046131 ENSMUSG00000113338 A530046M15Rik A530046M15 RIKEN cDNA A530046M15 gene ncRNA 0.000000 0.288557 -84(ATCTGAAAAAAAATGT,-,0.00),15(CTTTTATTATTGTAAT,+,0.00),71(GAATTGTTATGAAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1376 chr15 90819100 90819300 + -1.15984 NA Intergenic Intergenic 79276 NR_033583 20738 Mm.431547 NR_033583 ENSMUSG00000116210 Spn-ps Cd43-ps sialophorin, pseudogene pseudo 0.030000 0.417910 74(CATGTAAATGCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-421 chr10 55448969 55449169 + -1.15984 NA Intergenic Intergenic -657848 NM_001163833 73390 Mm.181475 NM_133751 ENSMUSG00000047669 Msl3l2 1700060H10Rik MSL3 like 2 protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1910 chr19 51817616 51817816 + -1.15984 NA Intergenic Lx7|LINE|L1 -446581 NM_008386 16333 Mm.46269 NM_008386 ENSMUSG00000035804 Ins1 Ins-1|Ins2-rs1 insulin I protein-coding 0.010000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1421 chr16 15723980 15724180 + -1.15984 NA intron (NM_011159, intron 39 of 85) intron (NM_011159, intron 39 of 85) 86214 NM_011159 19090 Mm.71 NM_011159 ENSMUSG00000022672 Prkdc AI326420|AU019811|DNA-PKcs|DNAPDcs|DNAPK|DNPK1|DOXNPH|HYRC1|XRCC7|dxnph|p460|scid|slip protein kinase, DNA activated, catalytic polypeptide protein-coding 0.010000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2059 chr2 95643717 95643917 + -1.15984 NA Intergenic MLTR25A|LTR|ERVK -674352 NM_001289742 241568 Mm.241682 NM_178725 ENSMUSG00000050587 Lrrc4c 6430556C10Rik|NGL-1 leucine rich repeat containing 4C protein-coding 0.000000 0.338308 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-414 chr4 99276192 99276392 + -1.15984 NA Intergenic Intergenic 82145 NM_001145967 242557 Mm.241663 NM_175029 ENSMUSG00000028550 Atg4c Apg4-C|Apg4c|Atg4cl|Autl1 autophagy related 4C, cysteine peptidase protein-coding 0.005000 0.368159 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-16 chr1 72994182 72994382 + -1.15984 NA Intergenic Lx8b|LINE|L1 21617 NM_009407 21958 Mm.425024 NM_009407 ENSMUSG00000026182 Tnp1 Stp-1|TP1|Tp-1 transition protein 1 protein-coding 0.005000 0.422886 -33(CATGCATAGTCATA,+,0.00),-33(CATGCATAGTCATA,-,0.00),76(CTTGAATATGAATG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2333 chr3 82210111 82210311 + -1.15984 NA Intergenic Intergenic -64265 NM_021896 60596 Mm.143831 NM_021896 ENSMUSG00000033910 Gucy1a1 1200016O07Rik|GCS-alpha-1|GCS-alpha-3|Gucy1a3|sGC-alpha1 guanylate cyclase 1, soluble, alpha 1 protein-coding 0.015000 0.298507 11(GTATTTTATTTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2586 chr4 55145174 55145374 + -1.15984 NA Intergenic Intergenic 197329 NM_172867 242466 Mm.102904 NM_172867 ENSMUSG00000060206 Zfp462 6030417H05|9430078C22Rik|Gt4-2|Zfpip|Znf462 zinc finger protein 462 protein-coding 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-420 chr10 55448697 55448897 + -1.15984 NA Intergenic Intergenic -658120 NM_001163833 73390 Mm.181475 NM_133751 ENSMUSG00000047669 Msl3l2 1700060H10Rik MSL3 like 2 protein-coding 0.000000 0.338308 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-326 chr2 95643714 95643914 + -1.15984 NA Intergenic MLTR25A|LTR|ERVK -674355 NM_001289742 241568 Mm.241682 NM_178725 ENSMUSG00000050587 Lrrc4c 6430556C10Rik|NGL-1 leucine rich repeat containing 4C protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2957 chr6 36989750 36989950 + -1.15984 NA intron (NM_001347104, intron 20 of 32) L1MD2|LINE|L1 -179671 NM_008973 19242 Mm.279690 NM_008973 ENSMUSG00000029838 Ptn HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1 pleiotrophin protein-coding 0.005000 0.303483 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-131 chr1 72994203 72994403 + -1.15984 NA Intergenic Lx8b|LINE|L1 21596 NM_009407 21958 Mm.425024 NM_009407 ENSMUSG00000026182 Tnp1 Stp-1|TP1|Tp-1 transition protein 1 protein-coding 0.005000 0.398010 -54(CATGCATAGTCATA,+,0.00),-54(CATGCATAGTCATA,-,0.00),55(CTTGAATATGAATG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3622 chr9 97848137 97848337 + -1.15984 NA intron (NM_022319, intron 1 of 17) intron (NM_022319, intron 1 of 17) -155183 NR_110443 66737 Mm.445908 NR_110443 ENSMUSG00000090255 4921534H16Rik - RIKEN cDNA 4921534H16 gene ncRNA 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1533 chr16 83703683 83703883 + -1.16052 NA Intergenic MLTR18B_MM|LTR|ERVK -667360 NR_040567 75247 Mm.417813 NR_040567 ENSMUSG00000116907 4930553E22Rik - RIKEN cDNA 4930553E22 gene ncRNA 0.005000 0.353234 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-237 chr16 83703660 83703860 + -1.16052 NA Intergenic MLTR18B_MM|LTR|ERVK -667383 NR_040567 75247 Mm.417813 NR_040567 ENSMUSG00000116907 4930553E22Rik - RIKEN cDNA 4930553E22 gene ncRNA 0.005000 0.348259 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-45 chr10 18431090 18431290 + -1.16134 NA intron (NM_173390, intron 1 of 6) intron (NM_173390, intron 1 of 6) 23515 NM_173390 215819 Mm.297971 NM_173390 ENSMUSG00000039835 Nhsl1 5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357 NHS-like 1 protein-coding 0.040000 0.626866 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-354 chr10 18431092 18431292 + -1.16134 NA intron (NM_173390, intron 1 of 6) intron (NM_173390, intron 1 of 6) 23517 NM_173390 215819 Mm.297971 NM_173390 ENSMUSG00000039835 Nhsl1 5730409E15Rik|A630035H13Rik|A730096F01|BC013565|D10Bwg0940e|mKIAA1357 NHS-like 1 protein-coding 0.045000 0.626866 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-507 chr7 114214386 114214586 + -1.16197 NA Intergenic Intergenic 40194 NM_033370 70349 Mm.277024 NM_033370 ENSMUSG00000030754 Copb1 2610019B04Rik coatomer protein complex, subunit beta 1 protein-coding 0.005000 0.378109 -76(TCTTTAGTATGCTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1467 chr16 47505430 47505630 + -1.16197 NA Intergenic L1MA9|LINE|L1 652969 NR_152166 619300 Mm.384092 NR_152166 6430553K19Rik - RIKEN cDNA 6430553K19 gene ncRNA 0.005000 0.353234 13(AATGTATTAATCATA,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-462 chr6 21257709 21257909 + -1.16197 NA intron (NM_019697, intron 1 of 5) intron (NM_019697, intron 1 of 5) 42463 NM_019697 16508 Mm.425316 NM_019697 ENSMUSG00000060882 Kcnd2 AI839615|AW555701|Kv4.2|R75121 potassium voltage-gated channel, Shal-related family, member 2 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1453 chr16 37336949 37337149 + -1.16197 NA intron (NM_172440, intron 3 of 27) L1_Rod|LINE|L1 47909 NM_001114612 207227 Mm.80170 NM_172440 ENSMUSG00000022829 Stxbp5l 9430094L02|A830015P08Rik|LLGL4|T2dm1|t2md1|tomosyn-2 syntaxin binding protein 5-like protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2772 chr5 48827157 48827357 + -1.16301 NA intron (NM_001199244, intron 1 of 7) intron (NM_001199244, intron 1 of 7) 62300 NM_030265 80334 Mm.160172 NM_030265 ENSMUSG00000029088 Kcnip4 AV032399|Calp|Calp250|KChIP4|KChIP4a Kv channel interacting protein 4 protein-coding 0.005000 0.288557 -56(TTATAGCCATTCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-430 chr5 48827207 48827407 + -1.16301 NA intron (NM_001199244, intron 1 of 7) intron (NM_001199244, intron 1 of 7) 62250 NM_030265 80334 Mm.160172 NM_030265 ENSMUSG00000029088 Kcnip4 AV032399|Calp|Calp250|KChIP4|KChIP4a Kv channel interacting protein 4 protein-coding 0.005000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-427 chr10 58383419 58383619 + -1.16496 NA intron (NM_201242, intron 1 of 9) intron (NM_201242, intron 1 of 9) -10854 NM_001346676 110829 Mm.57734 NM_026148 ENSMUSG00000019920 Lims1 2310016J22Rik|4921524A02Rik|AI507642|AU021743|AW551584|C430041B13Rik|Lims1l|PINCH|PINCH1 LIM and senescent cell antigen-like domains 1 protein-coding 0.010000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2685 chr4 123050901 123051101 + -1.16496 NA intron (NR_151450, intron 8 of 9) intron (NR_151450, intron 8 of 9) 34408 NR_151450 66966 Mm.235030 NM_025873 ENSMUSG00000028653 Trit1 2310075G14Rik|AI314189|AI314635|AV099619|IPPT|IPT|MOD5 tRNA isopentenyltransferase 1 protein-coding 0.005000 0.537313 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-415 chr4 100836418 100836618 + -1.16496 NA intron (NM_198037, intron 1 of 26) intron (NM_198037, intron 1 of 26) 59839 NM_198037 320508 Mm.151962 NM_198037 ENSMUSG00000028532 Cachd1 1190007F10Rik|AI852726|B430218L07Rik|Vwcd1|mKIAA1573 cache domain containing 1 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1273 chr15 23842913 23843113 + -1.16496 NA Intergenic Intergenic 806550 NM_001081299 320865 Mm.241965 NM_001081299 ENSMUSG00000040420 Cdh18 B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol cadherin 18 protein-coding 0.005000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-44 chr1 32657142 32657342 + -1.16496 NA intron (NM_133235, intron 8 of 8) intron (NM_133235, intron 8 of 8) -109949 NM_001164286 408191 Mm.479439 NM_001164286 ENSMUSG00000091318 Gm5415 EG408191|Senp14 predicted gene 5415 protein-coding 0.005000 0.328358 -19(CTTTTCTTTGGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-973 chr13 68573167 68573367 + -1.16496 NA intron (NR_131892, intron 4 of 13) LTR16A|LTR|ERVL 8837 NM_001308475 210009 Mm.205514 NM_172480 ENSMUSG00000034617 Mtrr 4732420G08|MSR 5-methyltetrahydrofolate-homocysteine methyltransferase reductase protein-coding 0.010000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-796 chr12 53950309 53950509 + -1.16496 NA intron (NM_001370962, intron 6 of 11) intron (NM_001370962, intron 6 of 11) 253465 NM_028133 112407 Mm.133037 NM_028133 ENSMUSG00000035105 Egln3 2610021G09Rik|AI505553|AI648162|Hif-p4h-3|Phd3|SM-20 egl-9 family hypoxia-inducible factor 3 protein-coding 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3774 chrX 168738201 168738401 + -1.16496 NA Intergenic B1_Mur1|SINE|Alu -56798 NM_009707 11856 Mm.441810 NM_009707 ENSMUSG00000031355 Arhgap6 AI504284|RhoGAPX-1 Rho GTPase activating protein 6 protein-coding 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3741 chrX 134440851 134441051 + -1.16496 NA intron (NM_010078, intron 13 of 22) intron (NM_010078, intron 13 of 22) 35539 NM_028958 74469 Mm.103259 NM_028958 ENSMUSG00000009596 Taf7l 4933438I11Rik|Taf2q TATA-box binding protein associated factor 7 like protein-coding 0.005000 0.497512 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-301 chr2 7089364 7089564 + -1.16496 NA intron (NM_001110231, intron 3 of 15) intron (NM_001110231, intron 3 of 15) -8162 NM_001160292 14007 Mm.398543 NM_010160 ENSMUSG00000002107 Celf2 B230218O03|B230345P09Rik|C88023|CELF-2|CUG-BP2|Cugbp2|D230046B21Rik|Etr-3|Napor|Napor-2|mETR-3 CUGBP, Elav-like family member 2 protein-coding 0.015000 0.427861 4(CCTGAATATTGATC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1875 chr19 32392631 32392831 + -1.16496 NA Intergenic Intergenic 3515 NR_033198 67188 Mm.391160 NR_033198 ENSMUSG00000097787 2700046G09Rik - RIKEN cDNA 2700046G09 gene ncRNA 0.000000 0.393035 31(CTTAAAATGAGAATGC,-,0.00),75(TGGTTGTCATGAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1562 chr16 97292697 97292897 + -1.16496 NA Intergenic Intergenic -63931 NM_019517 56175 Mm.97885 NM_019517 ENSMUSG00000040605 Bace2 1110059C24Rik|AEPLC|AI850424|ALP56|ARP1|ASP1|ASP21|BAE2|CDA13|CEAP1|DRAP beta-site APP-cleaving enzyme 2 protein-coding 0.005000 0.472637 27(ATTTGCATAAAGAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3544 chr9 54694919 54695119 + -1.16496 NA Intergenic Intergenic -4264 NM_001357875 58233 Mm.489676 NM_021422 ENSMUSG00000032285 Dnaja4 1110021L12Rik|AV358213|Dj4|Hsj4|mmDjA4 DnaJ heat shock protein family (Hsp40) member A4 protein-coding 0.000000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-668 chr11 84763171 84763371 + -1.16506 NA Intergenic PB1D10|SINE|Alu -42839 NR_046197 78471 Mm.47152 NR_046197 ENSMUSG00000085044 1700109G15Rik - RIKEN cDNA 1700109G15 gene ncRNA 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1232 chr14 123512889 123513089 + -1.16506 NA intron (NM_177393, intron 9 of 43) intron (NM_177393, intron 9 of 43) 114155 NM_177393 338370 Mm.255348 NM_177393 ENSMUSG00000000197 Nalcn A530023G15Rik|AI849508|Vgcnl1 sodium leak channel, non-selective protein-coding 0.000000 0.328358 -29(ATTAAAATAAAAATAT,-,0.00),-4(ATTTTAAAGAAAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-638 chr11 63518200 63518400 + -1.16785 NA Intergenic Intergenic 385497 NM_001302260 18858 Mm.1237 NM_008885 ENSMUSG00000018217 Pmp22 22kDa|Gas-3|HNPP|TRE002|Tr|trembler peripheral myelin protein 22 protein-coding 0.010000 0.373134 -96(TTTTGAATAAGAATTC,-,0.00),-51(CTTTAAAAGAAAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1437 chr16 24907387 24907587 + -1.16785 NA intron (NM_178665, intron 10 of 12) intron (NM_178665, intron 10 of 12) -152152 NR_040374 319487 Mm.137341 NR_040374 ENSMUSG00000096960 A230028O05Rik - RIKEN cDNA A230028O05 gene ncRNA 0.025000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3343 chr8 52799657 52799857 + -1.16785 NA Intergenic ORR1C2|LTR|ERVL-MaLR 443146 NR_151738 330767 Mm.246790 NR_151738 ENSMUSG00000110013 1190028D05Rik - RIKEN cDNA 1190028D05 gene ncRNA 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2687 chr4 126792748 126792948 + -1.16785 NA intron (NM_001035526, intron 3 of 23) intron (NM_001035526, intron 3 of 23) 39078 NM_001355196 100317 Mm.206206 NM_133886 ENSMUSG00000028830 AU040320 A730047D20Rik|AAVR|Kiaa0319l expressed sequence AU040320 protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1036 chr13 110747546 110747746 + -1.16785 NA Intergenic Intergenic -155853 NR_131193 75139 Mm.490931 NR_131193 ENSMUSG00000114472 Gm38397 - predicted gene, 38397 ncRNA 0.005000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-350 chr10 17608766 17608966 + -1.16785 NA Intergenic Intergenic -114362 NM_010828 17684 Mm.272321 NM_010828 ENSMUSG00000039910 Cited2 AI835299|ER154-like|Mrg1|Msg2|p35srj Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 protein-coding 0.005000 0.318408 -21(GTTTTCTTATGTATAT,+,0.00),25(ATATTGTCATGCAACT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2341 chr3 87546441 87546641 + -1.16785 NA Intergenic Intergenic -3516 NM_001370856 546801 NM_001370856 Etv3l EG546801 ets variant 3-like protein-coding 0.010000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-198 chr1 112299953 112300153 + -1.16785 NA Intergenic Intergenic 116865 NR_157044 102635484 NR_157044 Gm32810 Gm18406 predicted gene, 32810 ncRNA 0.000000 0.358209 -83(AGATGCATGAGAAAGC,-,0.00),17(GTTTAAATGACAATTT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2025 chr2 61271031 61271231 + -1.16785 NA Intergenic Intergenic -295980 NR_045335 100038493 Mm.388076 NR_045335 ENSMUSG00000075325 Gm13582 - predicted gene 13582 ncRNA 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-232 chr1 136127032 136127232 + -1.16785 NA TTS (NR_046168) TTS (NR_046168) 4051 NR_046169 329253 Mm.487858 NR_046167 ENSMUSG00000086264 Gm15850 6530439I21 predicted gene 15850 ncRNA 0.025000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-531 chr10 121857044 121857244 + -1.16785 NA intron (NM_001081037, intron 6 of 21) L1MB8|LINE|L1 117214 NM_001359720 270802 Mm.209172 NM_173022 ENSMUSG00000053684 BC048403 E030027L10 cDNA sequence BC048403 protein-coding 0.010000 0.348259 16(TGTGAATTATACATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-409 chr10 46899280 46899480 + -1.16785 NA Intergenic L1_Mus2|LINE|L1 654632 NR_028274 100302593 NR_028274 ENSMUSG00000095118 Snord14d Gm23710 small nucleolar RNA, C/D box 14D snoRNA 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1794 chr18 70697851 70698051 + -1.16785 NA Intergenic Intergenic 129659 NM_001311071 17191 Mm.322 NM_010773 ENSMUSG00000024513 Mbd2 MBD2a methyl-CpG binding domain protein 2 protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3690 chrX 42320504 42320704 + -1.16785 NA Intergenic Intergenic 169903 NM_021465 20843 Mm.290422 NM_021465 ENSMUSG00000025862 Stag2 9230105L23Rik|B230112I07Rik|SA-2|SAP2 stromal antigen 2 protein-coding 0.020000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1976 chr2 33555555 33555755 + -1.16785 NA Intergenic RMER1A|Other|Other 85443 NM_010725 16917 Mm.39825 NM_010725 ENSMUSG00000038765 Lmx1b Icst|LMX1.1|LMX1.2 LIM homeobox transcription factor 1 beta protein-coding 0.015000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1093 chr14 29279723 29279923 + -1.16785 NA intron (NM_009785, intron 11 of 37) L1MA9|LINE|L1 261615 NM_176920 319476 Mm.95780 NM_176920 ENSMUSG00000045776 Lrtm1 A930016D02Rik leucine-rich repeats and transmembrane domains 1 protein-coding 0.010000 0.383085 48(ATATGAATGACATAGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-889 chr13 9107441 9107641 + -1.16785 NA intron (NM_001311117, intron 1 of 16) intron (NM_001311117, intron 1 of 16) 13660 NM_001311117 217980 Mm.234944 NM_172585 ENSMUSG00000033499 Larp4b A630096F19|AI256361|D13Wsu64e|Larp5 La ribonucleoprotein domain family, member 4B protein-coding 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2745 chr5 23894322 23894522 + -1.16785 NA Intergenic Intergenic 42189 NR_028536 100217436 NR_028536 Snord93 Gm22397|MBII-336 small nucleolar RNA, C/D box 93 snoRNA 0.015000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1072 chr14 17568021 17568221 + -1.16785 NA Intergenic ORR1E|LTR|ERVL-MaLR -92839 NM_001113417 21834 Mm.32563 NM_009380 ENSMUSG00000021779 Thrb Nr1a2|T3R[b]|T3Rbeta|Thrb1|Thrb2|c-erbAbeta thyroid hormone receptor beta protein-coding 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1402 chr15 102172581 102172781 + -1.16785 NA Intergenic L1M4|LINE|L1 16362 NM_144942 246277 Mm.296382 NM_144942 ENSMUSG00000023044 Csad Csd cysteine sulfinic acid decarboxylase protein-coding 0.000000 0.338308 -80(GTATACTCTTGTTAAT,+,0.00),-55(TTTTTCTTTTTTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3626 chr9 99994929 99995129 + -1.16785 NA Intergenic Intergenic -27271 NR_040763 108970 Mm.390215 NR_040763 ENSMUSG00000101584 4930519F24Rik - RIKEN cDNA 4930519F24 gene ncRNA 0.045000 0.532338 -30(ATCTGCATACAAAAGG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-508 chr7 115831963 115832163 + -1.16785 NA intron (NM_001025559, intron 2 of 15) intron (NM_001025559, intron 2 of 15) -7353 NM_001277327 20679 Mm.323365 NM_011445 ENSMUSG00000051910 Sox6 AI987981|SOX-LZ SRY (sex determining region Y)-box 6 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-575 chr11 24279083 24279283 + -1.16785 NA Intergenic Intergenic 198488 NM_001159290 14025 Mm.53687 NM_016707 ENSMUSG00000000861 Bcl11a 2810047E18Rik|BCL-11A|Ctip1|D930021L15Rik|Evi9|Evi9a|Evi9b|Evi9c|mKIAA1809 B cell CLL/lymphoma 11A (zinc finger protein) protein-coding 0.010000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-717 chr11 120045922 120046122 + -1.16785 NA intron (NM_001198785, intron 1 of 13) intron (NM_001198785, intron 1 of 13) 1123 NM_001198785 11302 Mm.6826 NM_007377 ENSMUSG00000025375 Aatk AATYK|aatyk1|mKIAA0641 apoptosis-associated tyrosine kinase protein-coding 0.010000 0.601990 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-660 chr11 77083751 77083951 + -1.16785 NA Intergenic HAL1|LINE|L1 -5414 NM_001012309 237859 Mm.156195 NM_001012309 ENSMUSG00000037958 Nsrp1 8030451K07|AI851076|AL022898|Ccdc55|NSpr70|NSrp70 nuclear speckle regulatory protein 1 protein-coding 0.000000 0.358209 -36(GTATAGTCATGGTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1574 chr17 9895303 9895503 + -1.16849 NA Intergenic Intergenic -119537 NR_045433 71092 Mm.243827 NR_045433 ENSMUSG00000117264 4930452A19Rik 4933424P20Rik RIKEN cDNA 4930452A19 gene ncRNA 0.020000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1741 chr18 40436156 40436356 + -1.16849 NA intron (NM_026135, intron 2 of 2) intron (NM_026135, intron 2 of 2) 179257 NM_026135 383348 Mm.76366 NM_026135 ENSMUSG00000051401 Kctd16 4930434H12Rik|Gm1267 potassium channel tetramerisation domain containing 16 protein-coding 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-798 chr12 55806391 55806591 + -1.16849 NA intron (NM_001368814, intron 1 of 41) intron (NM_001368814, intron 1 of 41) 14676 NM_001368814 56784 Mm.292180 NM_019994 ENSMUSG00000021027 Ralgapa1 2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884 Ral GTPase activating protein, alpha subunit 1 protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1026 chr13 105582323 105582523 + -1.16849 NA Intergenic Intergenic 138730 NM_008308 15550 Mm.4716 NM_008308 ENSMUSG00000021721 Htr1a Gpcr18 5-hydroxytryptamine (serotonin) receptor 1A protein-coding 0.010000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-381 chr10 32086983 32087183 + -1.17078 NA intron (NM_001013411, intron 3 of 6) intron (NM_001013411, intron 3 of 6) -477358 NM_001146349 268291 Mm.295212 NM_001146349 ENSMUSG00000063760 Rnf217 AU016819|Ibrdc1 ring finger protein 217 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1012 chr13 95258812 95259012 + -1.17078 NA Intergenic Intergenic -8576 NM_001346782 218461 Mm.100167 NM_172263 ENSMUSG00000021684 Pde8b B230331L10Rik|C030047E14Rik phosphodiesterase 8B protein-coding 0.000000 0.477612 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-309 chr2 21557629 21557829 + -1.17078 NA intron (NM_001004761, intron 3 of 10) Lx10|LINE|L1 190162 NM_001004761 241263 Mm.166647 NM_175706 ENSMUSG00000045967 Gpr158 5330427M13Rik|mKIAA1136 G protein-coupled receptor 158 protein-coding 0.005000 0.427861 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-207 chr15 53597984 53598184 + -1.17078 NA intron (NM_177225, intron 4 of 4) intron (NM_177225, intron 4 of 4) 16195 NR_039538 100628567 NR_039538 ENSMUSG00000104794 Mir28c mmu-mir-28c microRNA 28c ncRNA 0.010000 0.417910 -32(CCTTAATATTCATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2914 chr6 4933334 4933534 + -1.17078 NA intron (NM_001363809, intron 2 of 15) intron (NM_001363809, intron 2 of 15) 30123 NR_156747 243725 Mm.332901 NM_181595 ENSMUSG00000032827 Ppp1r9a 2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|neurabin-I protein phosphatase 1, regulatory subunit 9A protein-coding 0.005000 0.402985 7(ATTTGTATGGAAAAGA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-456 chr6 4933351 4933551 + -1.17078 NA intron (NM_001363809, intron 2 of 15) intron (NM_001363809, intron 2 of 15) 30140 NR_156747 243725 Mm.332901 NM_181595 ENSMUSG00000032827 Ppp1r9a 2810430P21Rik|4930518N04Rik|5330407E15|A230094E16Rik|BB181831|NRB|neurabin-I protein phosphatase 1, regulatory subunit 9A protein-coding 0.010000 0.417910 -10(ATTTGTATGGAAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1604 chr17 43330299 43330499 + -1.17078 NA Intergenic Intergenic -30032 NM_001357332 224792 Mm.23478 NM_001081178 ENSMUSG00000056492 Adgrf5 8430401C09Rik|9330185D23|AI528491|Gpr116|mKIAA0758 adhesion G protein-coupled receptor F5 protein-coding 0.005000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-593 chr11 35357975 35358175 + -1.17078 NA intron (NM_011412, intron 4 of 35) L1MB7|LINE|L1 236619 NM_011412 20564 Mm.478604 NM_011412 ENSMUSG00000056427 Slit3 Slil2|Slit1|b2b2362.1Clo slit guidance ligand 3 protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-101 chr1 63900453 63900653 + -1.17078 NA Intergenic Intergenic -64174 NR_027824 433315 Mm.342696 NM_001013800 ENSMUSG00000044689 Gm13749 - predicted gene 13749 ncRNA 0.020000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-431 chr10 60607102 60607302 + -1.17078 NA intron (NR_045556, intron 4 of 68) intron (NR_045556, intron 4 of 68) 89288 NM_001252635 22295 Mm.440327 NM_023370 ENSMUSG00000012819 Cdh23 4930542A03Rik|USH1D|ahl|ahl1|bob|bus|mdfw|nmf112|nmf181|nmf252|sals|v cadherin 23 (otocadherin) protein-coding 0.020000 0.368159 44(ACATTATCATTAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1548 chr16 88540296 88540496 + -1.17078 NA Intergenic Intergenic 22787 NM_018778 54420 Mm.25836 NM_018778 ENSMUSG00000050520 Cldn8 AI648025 claudin 8 protein-coding 0.010000 0.358209 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-211 chr15 58997873 58998073 + -1.17125 NA intron (NM_001146180, intron 3 of 13) intron (NM_001146180, intron 3 of 13) 64172 NM_001364808 66218 Mm.322294 NM_023172 ENSMUSG00000022354 Ndufb9 1190008J14Rik|CI-B22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 0.045000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1339 chr15 58997884 58998084 + -1.17125 NA intron (NM_001146180, intron 3 of 13) intron (NM_001146180, intron 3 of 13) 64183 NM_001364808 66218 Mm.322294 NM_023172 ENSMUSG00000022354 Ndufb9 1190008J14Rik|CI-B22 NADH:ubiquinone oxidoreductase subunit B9 protein-coding 0.045000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1638 chr17 70547514 70547714 + -1.17125 NA intron (NM_001347414, intron 1 of 10) L1MA5|LINE|L1 -14133 NM_001128181 224997 Mm.311840 NM_027712 ENSMUSG00000003279 Dlgap1 4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162 DLG associated protein 1 protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-41 chr1 31228001 31228201 + -1.17125 NA Intergenic L1MA6|LINE|L1 5262 NM_029062 74708 Mm.246796 NM_029062 ENSMUSG00000026063 Pih1d3 4930521A18Rik PIH1 domain containing 3 protein-coding 0.015000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1106 chr14 40238746 40238946 + -1.17228 NA Intergenic Intergenic 583183 NR_045936 73591 Mm.65499 NR_045936 ENSMUSG00000101261 1700109I08Rik - RIKEN cDNA 1700109I08 gene ncRNA 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1017 chr13 99047328 99047528 + -1.17228 NA Intergenic Intergenic 40493 NR_045495 69603 Mm.390632 NR_045495 ENSMUSG00000100410 2310020H05Rik - RIKEN cDNA 2310020H05 gene ncRNA 0.025000 0.522388 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-165 chr14 40238889 40239089 + -1.17228 NA Intergenic Intergenic 583326 NR_045936 73591 Mm.65499 NR_045936 ENSMUSG00000101261 1700109I08Rik - RIKEN cDNA 1700109I08 gene ncRNA 0.010000 0.328358 -54(ATTCTATCATTTAAAT,+,0.00),13(ATCTTCATAACTAAGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-708 chr11 112180629 112180829 + -1.17228 NA Intergenic Intergenic 530627 NR_024085 217294 Mm.297761 NM_146031 ENSMUSG00000041674 BC006965 - cDNA sequence BC006965 ncRNA 0.020000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-109 chr11 112180652 112180852 + -1.17228 NA Intergenic Intergenic 530604 NR_024085 217294 Mm.297761 NM_146031 ENSMUSG00000041674 BC006965 - cDNA sequence BC006965 ncRNA 0.020000 0.437811 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-76 chr10 100947241 100947441 + -1.17377 NA Intergenic Intergenic -205706 NR_152765 102639396 Mm.404529 NR_152765 Gm35722 - predicted gene, 35722 ncRNA 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1100 chr14 34720338 34720538 + -1.17377 NA intron (NM_001004436, intron 4 of 18) intron (NM_001004436, intron 4 of 18) 46510 NM_001301330 218914 Mm.27957 NM_001004436 ENSMUSG00000041408 Wapl A530089A20Rik|BC037674|DIF-2|FOE|Wapal WAPL cohesin release factor protein-coding 0.000000 0.333333 18(ATTACCATCATAAACA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2818 chr5 81815705 81815905 + -1.17393 NA intron (NM_001359830, intron 25 of 25) intron (NM_001359830, intron 25 of 25) 308908 NR_138557 67327 Mm.87058 NR_138557 1700031L13Rik - RIKEN cDNA 1700031L13 gene ncRNA 0.000000 0.358209 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-305 chr2 14279353 14279553 + -1.17649 NA intron (NM_008625, intron 10 of 29) RMER15|LTR|ERVL 18450 NR_030609 100124488 NR_030609 ENSMUSG00000077897 Mir511 Mirn511|mir-511|mmu-mir-511 microRNA 511 ncRNA 0.010000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2248 chr3 41903582 41903782 + -1.17649 NA Intergenic Intergenic 161064 NM_028667 73852 Mm.29006 NM_027271 ENSMUSG00000025766 D3Ertd751e 2810009O15Rik|4930415G15Rik DNA segment, Chr 3, ERATO Doi 751, expressed protein-coding 0.010000 0.328358 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-79 chr10 103459616 103459816 + -1.17649 NA Intergenic Lx9|LINE|L1 91908 NM_001358821 103098 Mm.458408 NM_175328 ENSMUSG00000019894 Slc6a15 AA536730|AI326450|AI326451|v7-3 solute carrier family 6 (neurotransmitter transporter), member 15 protein-coding 0.005000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-66 chr10 73749126 73749326 + -1.17649 NA Intergenic L1MA4|LINE|L1 -72641 NM_001142748 11994 Mm.338933 NM_023115 ENSMUSG00000052613 Pcdh15 BB078305|Gm9815|Ush1f|av|nmf19|roda protocadherin 15 protein-coding 0.005000 0.442786 -37(GTAAACATGACAAAGC,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-120 chr12 55806104 55806304 + -1.17649 NA intron (NM_001368814, intron 1 of 41) intron (NM_001368814, intron 1 of 41) 14963 NM_001368814 56784 Mm.292180 NM_019994 ENSMUSG00000021027 Ralgapa1 2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884 Ral GTPase activating protein, alpha subunit 1 protein-coding 0.010000 0.462687 -29(CCTCAGGCATGCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-229 chr16 65309315 65309515 + -1.17649 NA Intergenic Intergenic -203631 NM_008310 15557 Mm.5040 NM_008310 ENSMUSG00000050783 Htr1f Htr1eb 5-hydroxytryptamine (serotonin) receptor 1F protein-coding 0.015000 0.278607 29(TTTTTGTTATTTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3753 chrX 143294818 143295018 + -1.17649 NA intron (NM_001358592, intron 9 of 11) intron (NM_001358592, intron 9 of 11) 99344 NM_001358592 83453 Mm.157697 NM_031258 ENSMUSG00000031283 Chrdl1 CHL|CHL1|Nrln1|VOPT chordin-like 1 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2471 chr3 143713571 143713771 + -1.17652 NA Intergenic Intergenic -1528 NR_040405 621809 Mm.360134 NR_040405 ENSMUSG00000105279 Gm6260 EG621809 predicted gene 6260 ncRNA 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2849 chr5 96662568 96662768 + -1.17652 NA intron (NM_175473, intron 29 of 73) intron (NM_175473, intron 29 of 73) -130717 NM_013470 11745 Mm.7214 NM_013470 ENSMUSG00000029484 Anxa3 Anx3 annexin A3 protein-coding 0.010000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3658 chr9 117156271 117156471 + -1.17652 NA intron (NM_001172123, intron 1 of 14) intron (NM_001172123, intron 1 of 14) 96112 NM_001172126 207181 Mm.326411 NM_178660 ENSMUSG00000039607 Rbms3 6720477E09Rik|8430436O14Rik RNA binding motif, single stranded interacting protein protein-coding 0.010000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1532 chr16 83703494 83703694 + -1.17677 NA Intergenic L1_Mus3|LINE|L1 -667549 NR_040567 75247 Mm.417813 NR_040567 ENSMUSG00000116907 4930553E22Rik - RIKEN cDNA 4930553E22 gene ncRNA 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2659 chr4 102481062 102481262 + -1.17719 NA intron (NM_019840, intron 1 of 14) intron (NM_019840, intron 1 of 14) -88898 NM_001177980 18578 Mm.20181 NM_019840 ENSMUSG00000028525 Pde4b Dpde4|R74983|dunce phosphodiesterase 4B, cAMP specific protein-coding 0.000000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1025 chr13 103295240 103295440 + -1.17719 NA intron (NM_175171, intron 1 of 28) intron (NM_175171, intron 1 of 28) 39152 NM_175171 328329 Mm.202606 NM_175171 ENSMUSG00000034751 Mast4 4930420O11Rik|AI642422|mKIAA0303 microtubule associated serine/threonine kinase family member 4 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2836 chr5 90178307 90178507 + -1.17719 NA Intergenic Intergenic 45589 NM_001163456 231430 Mm.319697 NM_001033310 ENSMUSG00000035505 Cox18 BC038311 cytochrome c oxidase assembly protein 18 protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2351 chr3 95181769 95181969 + -1.17719 NA 3' UTR (NM_029885, exon 10 of 10) 3' UTR (NM_029885, exon 10 of 10) 17530 NM_011351 20360 Mm.23662 NM_011351 ENSMUSG00000038777 Sema6c Semay|mKIAA1869 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6C protein-coding 0.005000 0.263682 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-273 chr1 162357992 162358192 + -1.17719 NA intron (NM_001038619, intron 2 of 20) intron (NM_001038619, intron 2 of 20) 119942 NM_001038619 103967 Mm.441620 NM_172646 ENSMUSG00000040265 Dnm3 9630020E24Rik|AW061159|B230343F03Rik|C530045C17|Dyna III|mKIAA0820 dynamin 3 protein-coding 0.015000 0.373134 63(AAATTGTCAGTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-91 chr1 58569101 58569301 + -1.17719 NA intron (NM_172513, intron 1 of 11) L1_Mur3|LINE|L1 16953 NM_001310599 213056 Mm.26272 NM_172513 ENSMUSG00000038174 Fam126b C130065N10Rik|D1Ertd53e|D630010C10 family with sequence similarity 126, member B protein-coding 0.005000 0.283582 27(ATTTGCAGAAAAATTG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-550 chr11 8758913 8759113 + -1.17719 NA Intergenic RLTR13D6|LTR|ERVK -94478 NM_001083587 319939 Mm.337820 NM_001083587 ENSMUSG00000020422 Tns3 BC023928|F830010I22Rik|TEM6|Tens1 tensin 3 protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2260 chr3 51972714 51972914 + -1.17719 NA intron (NM_001004176, intron 1 of 4) intron (NM_001004176, intron 1 of 4) 132192 NM_001004176 433586 Mm.234972 NM_001004176 ENSMUSG00000061143 Maml3 AV234550|BC049812|Mam-2|mKIAA1816 mastermind like transcriptional coactivator 3 protein-coding 0.015000 0.527363 -54(CTTTGCTTAACAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1892 chr19 41579511 41579711 + -1.17719 NA intron (NM_001370767, intron 7 of 7) RMER1B|Other|Other -9040 NR_106166 102465884 NR_106166 ENSMUSG00000098286 Mir8091 Gm27575|mmu-mir-8091 microRNA 8091 ncRNA 0.010000 0.547264 21(ATCTCCATGACACAGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2617 chr4 78490219 78490419 + -1.17719 NA Intergenic Intergenic -103728 NR_131142 623726 NR_131142 A430085M09Rik EG623726 RIKEN cDNA A430085M09 gene ncRNA 0.005000 0.278607 -85(ATCAGCATGGTAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-834 chr12 85021262 85021462 + -1.17719 NA intron (NM_001347421, intron 4 of 19) intron (NM_001347421, intron 4 of 19) 25041 NM_001347421 56531 Mm.153183 NM_178363 ENSMUSG00000021244 Ylpm1 A930013E17Rik|ZAP|Zap3 YLP motif containing 1 protein-coding 0.015000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1678 chr18 9308360 9308560 + -1.17719 NA Intergenic MTB_Mm|LTR|ERVL-MaLR -25651 NM_153086 225152 Mm.119273 NM_153086 ENSMUSG00000036855 Gjd4 9430022F06Rik|Cx39 gap junction protein, delta 4 protein-coding 0.000000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1470 chr16 49734637 49734837 + -1.17719 NA intron (NM_028680, intron 5 of 10) intron (NM_028680, intron 5 of 10) 35443 NM_028680 73916 Mm.241276 NM_028680 ENSMUSG00000032965 Ift57 4833420A15Rik|Esrrbl1|Hippi|MHS4R2 intraflagellar transport 57 protein-coding 0.000000 0.348259 80(ATGTACATAATAAAGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1227 chr14 121317041 121317241 + -1.17719 NA intron (NM_145465, intron 2 of 10) intron (NM_145465, intron 2 of 10) 62089 NM_145465 223255 Mm.390756 NM_145465 ENSMUSG00000063410 Stk24 1810013H02Rik|C76483|MST-3|Mst3|STE20 serine/threonine kinase 24 protein-coding 0.030000 0.552239 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3463 chr8 124375353 124375553 + -1.17719 NA intron (NM_171824, intron 4 of 6) intron (NM_171824, intron 4 of 6) 58483 NM_171824 209966 Mm.234233 NM_171824 ENSMUSG00000050751 Pgbd5 2900019M05Rik|AI854313 piggyBac transposable element derived 5 protein-coding 0.010000 0.552239 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-527 chr10 119827245 119827445 + -1.17719 NA intron (NR_131760, intron 4 of 4) intron (NR_131760, intron 4 of 4) 7956 NM_001358811 74053 Mm.196692 NM_028736 ENSMUSG00000034813 Grip1 4931400F03Rik|GRIP|eb glutamate receptor interacting protein 1 protein-coding 0.020000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1330 chr15 55500929 55501129 + -1.17719 NA intron (NM_001368422, intron 44 of 47) intron (NM_001368422, intron 44 of 47) 56283 NM_026759 68537 Mm.236795 NM_026759 ENSMUSG00000022370 Mrpl13 1110002D09Rik mitochondrial ribosomal protein L13 protein-coding 0.010000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1981 chr2 37787279 37787479 + -1.17719 NA exon (NM_001163566, exon 5 of 13) exon (NM_001163566, exon 5 of 13) 11130 NM_001163566 241324 Mm.392369 NM_001163566 ENSMUSG00000035403 Crb2 5930402A21|BC043114 crumbs family member 2 protein-coding 0.045000 0.611940 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-470 chr10 84925814 84926014 + -1.17719 NA intron (NM_001013441, intron 2 of 8) intron (NM_001013441, intron 2 of 8) 8301 NM_183172 237422 Mm.18936 NM_183172 ENSMUSG00000035620 Ric8b BC051080|Ric-8|Ric-8b RIC8 guanine nucleotide exchange factor B protein-coding 0.020000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-281 chr1 169323531 169323731 + -1.17719 NA Intergenic Intergenic 207833 NM_001355159 66977 Mm.151315 NM_023284 ENSMUSG00000026683 Nuf2 2410003C07Rik|AU044112|C85691|Cdca1|NUF2R NUF2, NDC80 kinetochore complex component protein-coding 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3344 chr8 53364196 53364396 + -1.17719 NA Intergenic Intergenic -147406 NM_001205054 11593 Mm.334535 NM_001005847 ENSMUSG00000031521 Aga AW060726 aspartylglucosaminidase protein-coding 0.000000 0.323383 2(ATTTGCAAGATTAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3264 chr8 3552515 3552715 + -1.17719 NA Intergenic Intergenic -15383 NM_001024728 546049 Mm.358733 NM_001024728 ENSMUSG00000065952 C330021F23Rik 2610027C06Rik|Rps23r1|Rps23rg1 RIKEN cDNA C330021F23 gene protein-coding 0.000000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3256 chr7 138483442 138483642 + -1.17719 NA Intergenic Intergenic -70700 NR_131022 75187 Mm.410810 NR_131022 ENSMUSG00000110037 4930543N07Rik Gm45685 RIKEN cDNA 4930543N07 gene ncRNA 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3602 chr9 89362078 89362278 + -1.17719 NA Intergenic Intergenic 150794 NM_001359993 107885 Mm.486274 NM_026829 ENSMUSG00000066442 Mthfs 1110034I12Rik|2310020H23Rik|AI119695 5, 10-methenyltetrahydrofolate synthetase protein-coding 0.000000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-117 chr1 70122537 70122737 + -1.17719 NA intron (NM_025728, intron 2 of 7) intron (NM_025728, intron 2 of 7) 171022 NM_025728 66722 Mm.440554 NM_025728 ENSMUSG00000053153 Spag16 4921511D23Rik|4930524F24Rik|4930585K05Rik|AV261009|Pf20|Wdr29 sperm associated antigen 16 protein-coding 0.005000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2596 chr4 68376462 68376662 + -1.17719 NA Intergenic Intergenic -54601 NR_151548 102633975 NR_151548 Gm12911 - predicted gene 12911 ncRNA 0.000000 0.298507 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2700 chr4 138676441 138676641 + -1.17719 NA Intergenic Intergenic 48315 NM_001285930 212190 Mm.292226 NM_178671 ENSMUSG00000043621 Ubxn10 5730509E04Rik|A830047D02|Ubxd3 UBX domain protein 10 protein-coding 0.040000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3752 chrX 142177019 142177219 + -1.17719 NA intron (NM_001007576, intron 3 of 19) intron (NM_001007576, intron 3 of 19) 19817 NM_001007576 245650 Mm.208511 NM_001007576 ENSMUSG00000042282 Gucy2f A930002I06|GC-F|GC2 guanylate cyclase 2f protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-863 chr12 103549789 103549989 + -1.17743 NA intron (NM_028980, intron 2 of 24) L1MA4A|LINE|L1 17324 NM_028980 74521 Mm.248619 NM_028980 ENSMUSG00000021209 Ppp4r4 8430415E04Rik|mKIAA1622 protein phosphatase 4, regulatory subunit 4 protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-672 chr11 86867074 86867274 + -1.17743 NA Intergenic Intergenic -14516 NR_162780 114483630 NR_162780 Mir12182 mmu-mir-12182 microRNA mir-12182 ncRNA 0.035000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-734 chr12 14301733 14301933 + -1.17743 NA Intergenic Intergenic 40299 NR_045003 791361 Mm.217963 NR_045003 ENSMUSG00000113336 Gm16497 - predicted gene 16497 ncRNA 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-296 chr1 180175867 180176067 + -1.17743 NA intron (NM_001359269, intron 3 of 13) intron (NM_001359269, intron 3 of 13) 17518 NM_001163290 67426 Mm.38330 NM_023341 ENSMUSG00000026489 Coq8a 4632432J16Rik|AI462003|Adck3|Cabc1|mKIAA0451 coenzyme Q8A protein-coding 0.035000 0.537313 -45(CTTAGCAAAAGAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2233 chr3 25699807 25700007 + -1.17743 NA intron (NM_001357095, intron 4 of 6) intron (NM_001357095, intron 4 of 6) 454079 NM_001357097 192167 Mm.316080 NM_138666 ENSMUSG00000063887 Nlgn1 6330415N05Rik|BB179718|NL1|Nlg1|mKIAA1070 neuroligin 1 protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2003 chr2 50715064 50715264 + -1.17743 NA Intergenic Intergenic -194520 NR_033595 227885 Mm.301654 NR_033595 ENSMUSG00000083270 Gm13498 - heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 0.010000 0.378109 -48(CCTTAGTTATGCAGAG,+,0.00),18(ATTTTCTTTTGCTAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3403 chr8 89582967 89583167 + -1.17743 NA Intergenic Intergenic -538905 NM_021390 58198 Mm.214361 NM_021390 ENSMUSG00000031665 Sall1 Msal-3 spalt like transcription factor 1 protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-57 chr1 39151180 39151380 + -1.17743 NA Intergenic Lx9|LINE|L1 35712 NR_105767 102466631 NR_105767 ENSMUSG00000098833 Mir6349 Gm27558|mmu-mir-6349 microRNA 6349 ncRNA 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1414 chr16 12032575 12032775 + -1.17743 NA intron (NM_028277, intron 2 of 4) intron (NM_028277, intron 2 of 4) 48562 NM_001174086 72555 Mm.310139 NM_028277 ENSMUSG00000022494 Shisa9 2700045P11Rik|Ckamp44 shisa family member 9 protein-coding 0.000000 0.447761 -38(GTTCTCTTATGCTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2536 chr4 26803965 26804165 + -1.17743 NA Intergenic Intergenic -98616 NR_040656 75360 Mm.67233 NR_040656 ENSMUSG00000086257 4930548K13Rik - RIKEN cDNA 4930548K13 gene ncRNA 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2290 chr3 63317737 63317937 + -1.17743 NA intron (NM_008604, intron 3 of 22) intron (NM_008604, intron 3 of 22) 21742 NM_001289463 17380 Mm.296022 NM_008604 ENSMUSG00000027820 Mme 6030454K05Rik|C85356|CALLA|CD10|NEP|SFE membrane metallo endopeptidase protein-coding 0.005000 0.358209 38(GATATATCATGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-958 chr13 48723651 48723851 + -1.17743 NA Intergenic L1M4b|LINE|L1 60715 NM_007526 12022 Mm.42241 NM_007526 ENSMUSG00000021381 Barx1 - BarH-like homeobox 1 protein-coding 0.020000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2269 chr3 54915460 54915660 + -1.17743 NA intron (NM_177854, intron 1 of 2) intron (NM_177854, intron 1 of 2) 327 NM_177854 329641 Mm.51187 NM_177854 ENSMUSG00000056306 Sertm1 6030405A18Rik serine rich and transmembrane domain containing 1 protein-coding 0.045000 0.606965 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2352 chr3 96485663 96485863 + -1.17743 NA Intergenic Intergenic -33457 NM_001256181 329716 Mm.275223 NM_183223 ENSMUSG00000046317 BC107364 D730018G16 cDNA sequence BC107364 protein-coding 0.015000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3211 chr7 114724687 114724887 + -1.17871 NA Intergenic LTR50|LTR|ERVL 6144 NM_054084 116903 Mm.273838 NM_054084 ENSMUSG00000030666 Calcb CGRP2|Calc2 calcitonin-related polypeptide, beta protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1898 chr19 43939316 43939516 + -1.17871 NA intron (NM_028029, intron 1 of 15) intron (NM_028029, intron 1 of 15) 782 NM_028029 71972 Mm.159024 NM_028029 ENSMUSG00000025195 Dnmbp 2410003L07Rik|2410003M15Rik|TUBA dynamin binding protein protein-coding 0.020000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-217 chr1 124976175 124976375 + -1.17871 NA Intergenic Intergenic 459452 NM_001205386 74117 Mm.183102 NM_023735 ENSMUSG00000026341 Actr3 1200003A09Rik|Arp3 ARP3 actin-related protein 3 protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2557 chr4 39325126 39325326 + -1.17871 NA Intergenic Intergenic -125067 NM_001081095 75471 Mm.23522 NM_001081095 ENSMUSG00000028287 1700009N14Rik AI429145 RIKEN cDNA 1700009N14 gene protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3 chr1 6472022 6472222 + -1.17871 NA Intergenic Intergenic -15109 NM_001244692 240690 Mm.234612 NM_173868 ENSMUSG00000033740 St18 AV348974|Myt3|NZF-3|Nzf3|mKIAA0535 suppression of tumorigenicity 18 protein-coding 0.000000 0.348259 -64(AGTACATATTCATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1962 chr2 22101840 22102040 + -1.17871 NA Intergenic Intergenic -125563 NM_148413 667663 Mm.330033 NM_148413 ENSMUSG00000025716 Myo3a 9030416P08Rik myosin IIIA protein-coding 0.005000 0.417910 -27(ATCAGCATCATAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-61 chr1 41940288 41940488 + -1.17871 NA Intergenic RMER6D|LTR|ERVK 754437 NR_027826 66297 Mm.45203 NM_183252 ENSMUSG00000060424 Pantr1 2610017I09Rik|Pou3f3os|linc-Brn1a POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1 ncRNA 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3428 chr8 105495664 105495864 + -1.17871 NA intron (NM_175160, intron 1 of 13) intron (NM_175160, intron 1 of 13) 1138 NM_175160 70796 Mm.100917 NM_175160 ENSMUSG00000039199 Zdhhc1 4432412D04Rik|DHHC-1 zinc finger, DHHC domain containing 1 protein-coding 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2940 chr6 23090537 23090737 + -1.17871 NA intron (NM_013930, intron 18 of 23) RLTR13E|LTR|ERVK 42349 NM_013930 30956 Mm.18651 NM_013930 ENSMUSG00000029695 Aass LKR|LKR/SDH|LOR|LOR/SDH|Lorsdh|SDH aminoadipate-semialdehyde synthase protein-coding 0.000000 0.348259 -75(ATTTAAAAGACAGAGC,-,0.00),7(TTTTCCATAAGAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3663 chr9 121822678 121822878 + -1.17871 NA intron (NM_028384, intron 5 of 15) intron (NM_028384, intron 5 of 15) 16683 NM_028384 100502861 Mm.335550 NM_028384 ENSMUSG00000079235 Ccdc13 2900041A11Rik|Gm188 coiled-coil domain containing 13 protein-coding 0.010000 0.626866 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1615 chr17 57239423 57239623 + -1.17871 NA intron (NM_001308074, intron 7 of 16) L1VL4|LINE|L1 7947 NM_001308074 78308 Mm.28468 NM_030084 ENSMUSG00000005823 Gpr108 1810015L19Rik|AA589464|C79132|Lustr2 G protein-coupled receptor 108 protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-136 chr1 78317497 78317697 + -1.17871 NA intron (NM_001004173, intron 1 of 4) L1MC3|LINE|L1 7251 NM_001004173 433323 Mm.276248 NM_001004173 ENSMUSG00000032908 Sgpp2 SPPase2|Spp2 sphingosine-1-phosphate phosphotase 2 protein-coding 0.005000 0.313433 38(TTTTTTTCTTTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1508 chr16 66878159 66878359 + -1.17871 NA intron (NM_001145977, intron 2 of 8) B4A|SINE|B4 221141 NR_040512 75501 Mm.394300 NR_040512 ENSMUSG00000092599 1700010K23Rik - RIKEN cDNA 1700010K23 gene ncRNA 0.000000 0.442786 -93(TATGCATATGGAAG,-,0.00) -100(GCATTCTTATGCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-935 chr13 33085589 33085789 + -1.17871 NA intron (NM_173052, intron 2 of 6) intron (NM_173052, intron 2 of 6) 1586 NM_173052 282663 Mm.314490 NM_173052 ENSMUSG00000051029 Serpinb1b 6330533H24Rik|EIB|Serpin1b1|ovalbumin serine (or cysteine) peptidase inhibitor, clade B, member 1b protein-coding 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3090 chr6 148838010 148838210 + -1.17871 NA Intergenic RLTR12C|LTR|ERVK -6643 NM_001081113 320727 Mm.260105 NM_001081113 ENSMUSG00000040029 Ipo8 6230418K12Rik|Abcc10|C130009K11Rik|MRP7|OM-1|Om1|Ranbp8 importin 8 protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2308 chr3 70248692 70248892 + -1.17871 NA Intergenic Intergenic 241179 NM_001018031 229389 Mm.331071 NM_001018031 ENSMUSG00000027788 Otol1 Gm414 otolin 1 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2056 chr2 95400994 95401194 + -1.17871 NA Intergenic L2a|LINE|L2 -917075 NM_001289742 241568 Mm.241682 NM_178725 ENSMUSG00000050587 Lrrc4c 6430556C10Rik|NGL-1 leucine rich repeat containing 4C protein-coding 0.000000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2981 chr6 58483427 58483627 + -1.17871 NA Intergenic MERVL_2A-int|LTR|ERVL -10649 NM_001166729 626828 Mm.480268 NM_001166729 ENSMUSG00000115404 Vmn1r31 EG626828|Gm6709 vomeronasal 1 receptor 31 protein-coding 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3157 chr7 81275864 81276064 + -1.17871 NA intron (NM_008803, intron 1 of 21) L1M3|LINE|L1 62699 NM_008803 18584 Mm.371577 NM_008803 ENSMUSG00000025584 Pde8a AI551852|Pde8 phosphodiesterase 8A protein-coding 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2311 chr3 72692045 72692245 + -1.17871 NA Intergenic Lx9|LINE|L1 275718 NM_001081137 69983 Mm.261054 NM_001081137 ENSMUSG00000027790 Sis 2010204N08Rik|SI|Si-s sucrase isomaltase (alpha-glucosidase) protein-coding 0.000000 0.228856 -26(GTTCACTTATTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-623 chr11 54303997 54304197 + -1.17871 NA promoter-TSS (NM_001033597) promoter-TSS (NM_001033597) -107 NM_001033597 216739 Mm.267478 NM_144823 ENSMUSG00000020333 Acsl6 A330035H04Rik|AW050338|Facl6|LACS|Lacsl|mKIAA0837 acyl-CoA synthetase long-chain family member 6 protein-coding 0.125000 0.746269 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2128 chr2 131982686 131982886 + -1.17871 NA Intergenic Intergenic 31749 NM_001278520 26434 Mm.180750 NM_023043 ENSMUSG00000027338 Prnd AI450264|Dpl|PrPLP|doppel prion like protein doppel protein-coding 0.005000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1929 chr2 4917693 4917893 + -1.17871 NA Intergenic Intergenic -1203 NM_010726 16922 Mm.391704 NM_010726 ENSMUSG00000026664 Phyh AI256161|AI265699|Lnap1|PAHX phytanoyl-CoA hydroxylase protein-coding 0.010000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3715 chrX 77721491 77721691 + -1.17871 NA Intergenic Intergenic -46139 NM_001101585 628893 Mm.477437 NM_001101585 Cldn34-ps EG628893|Gm6927 claudin 34, pseudogene protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2346 chr3 92496568 92496768 + -1.17871 NA Intergenic Intergenic 3825 NM_173070 229562 Mm.246590 NM_173070 ENSMUSG00000045566 Sprr4 - small proline-rich protein 4 protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2213 chr3 7712461 7712661 + -1.17871 NA Intergenic Lx3B|LINE|L1 -98801 NM_001313889 16196 Mm.3825 NM_008371 ENSMUSG00000040329 Il7 A630026I06Rik|Il-7|hlb368 interleukin 7 protein-coding 0.005000 0.378109 -1(CCTGCAAAATTCATG,+,0.00),-1(CCTGCAAAATTCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2559 chr4 39605300 39605500 + -1.17871 NA Intergenic Intergenic 155107 NM_001081095 75471 Mm.23522 NM_001081095 ENSMUSG00000028287 1700009N14Rik AI429145 RIKEN cDNA 1700009N14 gene protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3706 chrX 59547370 59547570 + -1.17871 NA intron (NM_001290414, intron 2 of 6) intron (NM_001290414, intron 2 of 6) 19878 NM_001356335 14168 Mm.7995 NM_010200 ENSMUSG00000031137 Fgf13 Fhf2 fibroblast growth factor 13 protein-coding 0.005000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1711 chr18 28906309 28906509 + -1.17871 NA intron (NR_155537, intron 5 of 6) intron (NR_155537, intron 5 of 6) 34193 NR_155537 102637039 Mm.50107 NR_155537 ENSMUSG00000117473 Gm33948 - predicted gene, 33948 ncRNA 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-510 chr10 108041765 108041965 + -1.17871 NA Intergenic Intergenic 95220 NR_131147 628877 Mm.363120 NR_131147 ENSMUSG00000112910 Gm29685 - predicted gene, 29685 ncRNA 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3274 chr8 11091274 11091474 + -1.17871 NA Intergenic Intergenic -82445 NM_001081212 384783 Mm.407207 NM_001081212 ENSMUSG00000038894 Irs2 Irs-2 insulin receptor substrate 2 protein-coding 0.020000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1097 chr14 31572925 31573125 + -1.17871 NA intron (NM_009937, intron 1 of 16) intron (NM_009937, intron 1 of 16) 4358 NM_009937 382864 Mm.239821 NM_009937 ENSMUSG00000057606 Colq A130034K24Rik collagen-like tail subunit (single strand of homotrimer) of asymmetric acetylcholinesterase protein-coding 0.010000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3149 chr7 76119848 76120048 + -1.17871 NA Intergenic Intergenic -109939 NM_001199224 244071 Mm.322829 NM_172902 ENSMUSG00000025754 Agbl1 Ccp4|D430020F16|EG244071|Nna1-l1 ATP/GTP binding protein-like 1 protein-coding 0.010000 0.442786 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-68 chr10 80036873 80037073 + -1.17952 NA exon (NM_025554, exon 4 of 7) exon (NM_025554, exon 4 of 7) 2686 NM_025554 66420 Mm.18579 NM_025554 ENSMUSG00000004667 Polr2e 2410021N14Rik|25kDa|AW208866|RPB5|XAP4 polymerase (RNA) II (DNA directed) polypeptide E protein-coding 0.025000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-528 chr10 120673411 120673611 + -1.17952 NA Intergenic Intergenic -92221 NR_038000 70874 Mm.427286 NR_038000 ENSMUSG00000044544 4921513I03Rik - RIKEN cDNA 4921513I03 gene ncRNA 0.000000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2464 chr3 141112658 141112858 + -1.17982 NA Intergenic Intergenic 99597 NM_008811 18598 Mm.4223 NM_008811 ENSMUSG00000047674 Pdha2 Pdhal pyruvate dehydrogenase E1 alpha 2 protein-coding 0.000000 0.407960 15(CATTTGTCATGCACTT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-194 chr15 22009609 22009809 + -1.18119 NA Intergenic ORR1C2|LTR|ERVL-MaLR 705275 NM_001165971 545091 Mm.475598 NM_001165971 Hnrnpa1l2-ps2 EG545091|Gm5803 heterogeneous nuclear ribonucleoprotein A1-like 2, pseudogene 2 protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-173 chr1 102848558 102848758 + -1.18119 NA Intergenic Intergenic 1692890 NR_037989 100504525 Mm.87065 NR_037989 ENSMUSG00000100684 Gm20268 - predicted gene, 20268 ncRNA 0.000000 0.328358 37(AATGCATATGAATA,+,0.00),37(AATGCATATGAATA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-177 chr14 86254152 86254352 + -1.18119 NA intron (NR_040457, intron 1 of 3) MIR3|SINE|MIR 8282 NR_040457 75155 Mm.399239 NR_040457 ENSMUSG00000115271 4930529K09Rik 4930507G21Rik RIKEN cDNA 4930529K09 gene ncRNA 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2013 chr2 53803368 53803568 + -1.18119 NA Intergenic L1_Mur2|LINE|L1 282084 NM_023396 67874 Mm.27086 NM_023396 ENSMUSG00000075334 Rprm 2410012A13Rik|Reprimo reprimo, TP53 dependent G2 arrest mediator candidate protein-coding 0.000000 0.338308 -36(ATTTTCTTAACAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1351 chr15 72738861 72739061 + -1.18279 NA intron (NM_180662, intron 17 of 21) intron (NM_180662, intron 17 of 21) 71363 NR_002864 353342 Mm.440245 NR_002864 ENSMUSG00000106847 Peg13 - paternally expressed 13 ncRNA 0.010000 0.487562 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-400 chr4 53578312 53578512 + -1.18388 NA intron (NM_133891, intron 15 of 15) MIRb|SINE|MIR -53012 NM_001369182 319636 Mm.103464 NM_176966 ENSMUSG00000054752 Fsd1l A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl fibronectin type III and SPRY domain containing 1-like protein-coding 0.010000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-414 chr10 52883549 52883749 + -1.18388 NA intron (NM_178675, intron 1 of 7) intron (NM_178675, intron 1 of 7) 193148 NM_178675 215085 Mm.338690 NM_178675 ENSMUSG00000038602 Slc35f1 Duf6|E130016L02 solute carrier family 35, member F1 protein-coding 0.005000 0.398010 67(ACATTGTAATTCTAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-60 chr10 52883541 52883741 + -1.18388 NA intron (NM_178675, intron 1 of 7) intron (NM_178675, intron 1 of 7) 193140 NM_178675 215085 Mm.338690 NM_178675 ENSMUSG00000038602 Slc35f1 Duf6|E130016L02 solute carrier family 35, member F1 protein-coding 0.005000 0.398010 75(ACATTGTAATTCTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1449 chr16 36598386 36598586 + -1.18509 NA Intergenic Intergenic -36352 NM_013803 12374 Mm.103619 NM_013803 ENSMUSG00000051980 Casr CaR|Gprc2a calcium-sensing receptor protein-coding 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-119 chr1 70713485 70713685 + -1.18509 NA intron (NM_025728, intron 7 of 7) intron (NM_025728, intron 7 of 7) -12130 NM_001310658 320460 Mm.360649 NM_177164 ENSMUSG00000045648 Vwc2l A830006F12Rik|Brl von Willebrand factor C domain-containing protein 2-like protein-coding 0.010000 0.393035 -30(ATTTGCATCTGAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2236 chr3 29071239 29071439 + -1.18509 NA Intergenic HAL1|LINE|L1 -10448 NR_151636 75740 Mm.330948 NM_029412 ENSMUSG00000063600 Egfem1 6130401L20Rik|Efcab11 EGF-like and EMI domain containing 1 protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2133 chr2 134584771 134584971 + -1.18509 NA Intergenic Intergenic -30519 NM_010403 15112 Mm.26634 NM_010403 ENSMUSG00000027261 Hao1 GOX|Gox1|Hao-1 hydroxyacid oxidase 1, liver protein-coding 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3620 chr9 95979255 95979455 + -1.18509 NA intron (NM_001311130, intron 13 of 41) intron (NM_001311130, intron 13 of 41) 24595 NM_001311130 24127 Mm.291179 NM_011916 ENSMUSG00000032410 Xrn1 Dhm2|exo|mXrn1 5'-3' exoribonuclease 1 protein-coding 0.000000 0.263682 -10(TTTTACATGAAAATAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3539 chr9 50742875 50743075 + -1.18509 NA intron (NM_025865, intron 1 of 3) intron (NM_025865, intron 1 of 3) 3552 NM_025865 66952 Mm.273375 NM_025865 ENSMUSG00000032062 2310030G06Rik 2610024D04Rik|AV017521 RIKEN cDNA 2310030G06 gene protein-coding 0.005000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3148 chr7 76049709 76049909 + -1.18509 NA Intergenic Intergenic -180078 NM_001199224 244071 Mm.322829 NM_172902 ENSMUSG00000025754 Agbl1 Ccp4|D430020F16|EG244071|Nna1-l1 ATP/GTP binding protein-like 1 protein-coding 0.010000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-795 chr12 50903309 50903509 + -1.18509 NA Intergenic Lx9|LINE|L1 -101747 NR_126468 75494 Mm.416848 NR_126468 ENSMUSG00000111986 1700008C04Rik - RIKEN cDNA 1700008C04 gene ncRNA 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-120 chr1 70713692 70713892 + -1.18509 NA intron (NM_025728, intron 7 of 7) intron (NM_025728, intron 7 of 7) -11923 NM_001310658 320460 Mm.360649 NM_177164 ENSMUSG00000045648 Vwc2l A830006F12Rik|Brl von Willebrand factor C domain-containing protein 2-like protein-coding 0.030000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3486 chr9 13454682 13454882 + -1.18509 NA Intergenic Intergenic 23421 NR_028271 18689 Mm.41972 NM_008835 ENSMUSG00000031802 Phxr4 Sp5 per-hexamer repeat gene 4 ncRNA 0.010000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2504 chr3 158897683 158897883 + -1.18509 NA Intergenic Intergenic -178581 NR_040750 624759 Mm.491054 NR_040750 ENSMUSG00000106053 Gm20752 - predicted gene, 20752 ncRNA 0.000000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2937 chr6 21257660 21257860 + -1.18638 NA intron (NM_019697, intron 1 of 5) intron (NM_019697, intron 1 of 5) 42414 NM_019697 16508 Mm.425316 NM_019697 ENSMUSG00000060882 Kcnd2 AI839615|AW555701|Kv4.2|R75121 potassium voltage-gated channel, Shal-related family, member 2 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-279 chr1 168189446 168189646 + -1.18638 NA intron (NM_183355, intron 6 of 8) intron (NM_183355, intron 6 of 8) 242623 NM_001291508 18514 Mm.43358 NM_008783 ENSMUSG00000052534 Pbx1 2310056B04Rik|D230003C07Rik|Pbx-1 pre B cell leukemia homeobox 1 protein-coding 0.000000 0.358209 11(CTTTTCTCTTTTTAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-897 chr13 14833071 14833271 + -1.18643 NA Intergenic Lx5|LINE|L1 202913 NM_134067 105351 Mm.41450 NM_134067 ENSMUSG00000039182 AW209491 - expressed sequence AW209491 protein-coding 0.000000 0.333333 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-40 chr10 6616347 6616547 + -1.18643 NA Intergenic Intergenic -142146 NM_001302796 18390 Mm.438000 NM_011013 ENSMUSG00000000766 Oprm1 M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR opioid receptor, mu 1 protein-coding 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-764 chr12 35886793 35886993 + -1.18643 NA Intergenic B3|SINE|B2 -38728 NM_207531 403205 Mm.190508 NM_207531 ENSMUSG00000036231 Agr3 BCMP11|E030025L21Rik|Gm888 anterior gradient 3 protein-coding 0.015000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-432 chr5 55313881 55314081 + -1.18643 NA Intergenic L1_Mus4|LINE|L1 963989 NR_038045 330086 Mm.254449 NM_177871 ENSMUSG00000105912 Gm10440 D130065D13 predicted gene 10440 ncRNA 0.000000 0.343284 -23(GAATTATTATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2336 chr3 84108554 84108754 + -1.18643 NA intron (NM_029797, intron 5 of 7) intron (NM_029797, intron 5 of 7) 47132 NM_029797 76915 Mm.274829 NM_029797 ENSMUSG00000033752 Mnd1 2610034E18Rik|AI591601|Gaj meiotic nuclear divisions 1 protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-331 chr10 6616334 6616534 + -1.18643 NA Intergenic Intergenic -142159 NM_001302796 18390 Mm.438000 NM_011013 ENSMUSG00000000766 Oprm1 M-OR-1|MOP-R|MOR-1|MOR-1O|Oprm|mor|muOR opioid receptor, mu 1 protein-coding 0.000000 0.323383 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-30 chr1 142867296 142867496 + -1.18643 NA Intergenic RMER15|LTR|ERVL -773301 NM_020025 26878 Mm.285580 NM_020025 ENSMUSG00000033849 B3galt2 - UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 protein-coding 0.010000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3210 chr7 114214446 114214646 + -1.19031 NA Intergenic Intergenic 40134 NM_033370 70349 Mm.277024 NM_033370 ENSMUSG00000030754 Copb1 2610019B04Rik coatomer protein complex, subunit beta 1 protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-359 chr10 20463829 20464029 + -1.19183 NA intron (NM_001347366, intron 2 of 11) intron (NM_001347366, intron 2 of 11) 84399 NM_001347366 29863 Mm.425617 NM_013875 ENSMUSG00000019990 Pde7b - phosphodiesterase 7B protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-72 chr1 50058996 50059196 + -1.19183 NA Intergenic MusHAL1|LINE|L1 814480 NR_151585 442837 Mm.337149 NM_001002792 ENSMUSG00000051616 C230029F24Rik - RIKEN cDNA C230029F24 gene ncRNA 0.000000 0.388060 -69(ATGTACAAAACAAACC,-,0.00),-25(ATTAACATAAAAAGGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3724 chrX 93783007 93783207 + -1.19183 NA intron (NM_145630, intron 7 of 11) intron (NM_145630, intron 7 of 11) 49043 NM_145630 236900 Mm.12775 NM_145630 ENSMUSG00000035232 Pdk3 2610001M10Rik|AI035637 pyruvate dehydrogenase kinase, isoenzyme 3 protein-coding 0.010000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3000 chr6 74763328 74763528 + -1.19183 NA Intergenic Intergenic -1154755 NR_157242 102634075 Mm.78553 NR_157242 ENSMUSG00000107441 Gm31747 - predicted gene, 31747 ncRNA 0.005000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2599 chr4 68596406 68596606 + -1.19183 NA Intergenic Intergenic -274545 NR_151548 102633975 NR_151548 Gm12911 - predicted gene 12911 ncRNA 0.000000 0.363184 62(AATACATTATTCAGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2474 chr3 144664925 144665125 + -1.19183 NA Intergenic Intergenic 55310 NM_001282037 54673 Mm.271775 NM_019464 ENSMUSG00000037062 Sh3glb1 AA409932|AI314629|AU015566|Bif-1|mKIAA0491 SH3-domain GRB2-like B1 (endophilin) protein-coding 0.025000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-515 chr10 110867955 110868155 + -1.19183 NA intron (NR_045979, intron 2 of 2) intron (NR_045979, intron 2 of 2) 28452 NR_045979 75630 Mm.392786 NR_045979 ENSMUSG00000101801 1700020G17Rik 4930480D05Rik RIKEN cDNA 1700020G17 gene ncRNA 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2944 chr6 26221989 26222189 + -1.19183 NA Intergenic Intergenic 290663 NR_040771 626904 Mm.126787 NR_040771 ENSMUSG00000106799 Gm20756 - predicted gene, 20756 ncRNA 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2186 chr2 163285146 163285346 + -1.19183 NA intron (NM_001363064, intron 3 of 8) intron (NM_001363064, intron 3 of 8) 59792 NM_001363064 269389 Mm.207709 NM_001098799 ENSMUSG00000074607 Tox2 AI851523|AV026525|BI987407|Gcx1|RxHMG1 TOX high mobility group box family member 2 protein-coding 0.025000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1393 chr15 96431698 96431898 + -1.19183 NA exon (NM_028148, exon 6 of 15) exon (NM_028148, exon 6 of 15) 29045 NM_028148 72193 Mm.324474 NM_028148 ENSMUSG00000033228 Scaf11 1110061H03Rik|2610510E10Rik|AI462454|CASP11|SIP1|SRRP129|Sfrs2ip|Srsf2ip|mKIAA3013 SR-related CTD-associated factor 11 protein-coding 0.005000 0.288557 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1630 chr17 68163793 68163993 + -1.19183 NA Intergenic Intergenic -109904 NM_177278 320858 Mm.137356 NM_177278 ENSMUSG00000041565 L3mbtl4 A730037L19Rik|D930040M24Rik L3MBTL4 histone methyl-lysine binding protein protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3691 chrX 42600378 42600578 + -1.19183 NA intron (NM_011855, intron 24 of 32) intron (NM_011855, intron 24 of 32) 95156 NM_001313691 20400 Mm.441197 NM_011364 ENSMUSG00000005696 Sh2d1a Gm686|SAP SH2 domain containing 1A protein-coding 0.000000 0.328358 40(GAATTGGCATGTAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-822 chr12 71191924 71192124 + -1.19183 NA intron (NM_029818, intron 25 of 27) intron (NM_029818, intron 25 of 27) 55176 NM_001163378 76967 Mm.87290 NM_029818 ENSMUSG00000034601 2700049A03Rik Ta3|Talpid3|mKIAA0586 RIKEN cDNA 2700049A03 gene protein-coding 0.005000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1927 chr19 60917361 60917561 + -1.19183 NA intron (NM_018869, intron 1 of 15) intron (NM_018869, intron 1 of 15) 27712 NM_018869 14773 Mm.279400 NM_018869 ENSMUSG00000003228 Grk5 Gprk5 G protein-coupled receptor kinase 5 protein-coding 0.005000 0.333333 -52(TTTTTTTTTTTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3017 chr6 87317050 87317250 + -1.19183 NA intron (NM_054041, intron 1 of 17) intron (NM_054041, intron 1 of 17) 18625 NM_054041 69538 Mm.232525 NM_054041 ENSMUSG00000033420 Antxr1 2310008J16Rik|2810405N18Rik|Antrx1|Tem8 anthrax toxin receptor 1 protein-coding 0.015000 0.427861 31(TTTTTCTTTTTCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1365 chr15 84280059 84280259 + -1.19183 NA intron (NM_133167, intron 3 of 12) MTD|LTR|ERVL-MaLR -44561 NM_022321 64099 Mm.251356 NM_022321 ENSMUSG00000022439 Parvg AI413459 parvin, gamma protein-coding 0.035000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3675 chrX 13398569 13398769 + -1.19183 NA Intergenic L2a|LINE|L2 -62421 NM_173415 236690 Mm.90233 NM_173415 ENSMUSG00000051228 Nyx CLNP|CSNB1|CSNB4|nob nyctalopin protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3562 chr9 67788000 67788200 + -1.19183 NA Intergenic L3|LINE|CR1 -27870 NR_153961 102633151 Mm.392017 NR_153961 M5C1000I18Rik - RIKEN cDNA M5C1000I18 gene ncRNA 0.015000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3045 chr6 104940716 104940916 + -1.19183 NA Intergenic RMER6C|LTR|ERVK 447772 NM_017383 53870 Mm.321671 NM_017383 ENSMUSG00000030092 Cntn6 NB-3 contactin 6 protein-coding 0.015000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1359 chr15 79650695 79650895 + -1.19183 NA intron (NM_029407, intron 1 of 17) B1F1|SINE|Alu 8161 NM_029407 75729 Mm.78946 NM_029407 ENSMUSG00000042564 Fam227a 4933432B09Rik family with sequence similarity 227, member A protein-coding 0.000000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2270 chr3 55549287 55549487 + -1.19183 NA Intergenic B1_Mus1|SINE|Alu 87659 NM_001357468 13175 Mm.393242 NM_019978 ENSMUSG00000027797 Dclk1 1700113D08Rik|2810480F11Rik|AI836758|Click-I|Cpg16|Dcamkl1|Dcl|Dclk|mKIAA0369 doublecortin-like kinase 1 protein-coding 0.000000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1828 chr19 6871539 6871739 + -1.19183 NA Intergenic Intergenic -13428 NM_001081291 78317 Mm.329596 NM_198008 ENSMUSG00000047810 Ccdc88b 2610041P08Rik|Ccdc88 coiled-coil domain containing 88B protein-coding 0.005000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-163 chr1 94626179 94626379 + -1.19183 NA Intergenic Intergenic -171163 NR_040473 74689 Mm.399187 NR_040473 ENSMUSG00000100518 4930440C22Rik - RIKEN cDNA 4930440C22 gene ncRNA 0.005000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2377 chr3 108799590 108799790 + -1.19183 NA intron (NM_011504, intron 15 of 18) ID_B1|SINE|B4 40812 NM_011504 20912 Mm.316894 NM_011504 ENSMUSG00000027882 Stxbp3 Munc-18c|Stxbp3a|Sxtbp3|Unc18-3 syntaxin binding protein 3 protein-coding 0.005000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2181 chr2 161185183 161185383 + -1.19183 NA Intergenic Intergenic -76197 NR_126509 71389 Mm.122738 NM_173368 ENSMUSG00000057133 Chd6 5430439G14Rik|6330406J24Rik|CHD-6 chromodomain helicase DNA binding protein 6 protein-coding 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2958 chr6 37207883 37208083 + -1.19183 NA intron (NM_001347104, intron 1 of 32) IMPB_01|Satellite|Satellite 91993 NM_001081206 320127 Mm.119469 NM_001081206 ENSMUSG00000038665 Dgki 6430604M11Rik|C130010K08Rik diacylglycerol kinase, iota protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3229 chr7 126606645 126606845 + -1.19183 NA Intergenic Intergenic -11723 NM_145636 246779 Mm.222632 NM_145636 ENSMUSG00000044701 Il27 IL-27|IL-27-A|IL-27p28|IL27-A|Il30|p28 interleukin 27 protein-coding 0.020000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1135 chr14 65741933 65742133 + -1.19183 NA intron (NM_001168318, intron 6 of 7) intron (NM_001168318, intron 6 of 7) -63878 NM_023209 52033 Mm.24337 NM_023209 ENSMUSG00000022033 Pbk 2810434B10Rik|AW538537|D14Ertd732e|TOPK PDZ binding kinase protein-coding 0.020000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-258 chr1 151757206 151757406 + -1.19183 NA intron (NM_001039644, intron 1 of 19) intron (NM_001039644, intron 1 of 19) 1932 NM_001039644 66967 Mm.337691 NM_001039644 ENSMUSG00000043019 Edem3 2310050N11Rik ER degradation enhancer, mannosidase alpha-like 3 protein-coding 0.010000 0.442786 -5(TCTTTGACATTCTTAT,+,0.00),1(ACATTCTTATTAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1090 chr14 27798797 27798997 + -1.19183 NA intron (NM_177814, intron 3 of 15) intron (NM_177814, intron 3 of 15) 176490 NM_001347497 238988 Mm.318004 NM_177814 ENSMUSG00000040640 Erc2 6430531D06|CAST|CAST1/ERC2|D14Ertd171e|ELKS2alpha ELKS/RAB6-interacting/CAST family member 2 protein-coding 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-926 chr13 28614281 28614481 + -1.19183 NA intron (NR_045054, intron 5 of 7) intron (NR_045054, intron 5 of 7) 96492 NR_105787 102466635 NR_105787 ENSMUSG00000099158 Mir6368 Gm27800|mmu-mir-6368 microRNA 6368 ncRNA 0.005000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2934 chr6 18493485 18493685 + -1.19183 NA intron (NR_149735, intron 2 of 22) intron (NR_149735, intron 2 of 22) 21284 NR_149735 30785 Mm.224189 NM_080285 ENSMUSG00000000416 Cttnbp2 3010022N24Rik|4732477G22Rik|6430526E05|9130022E09Rik|AU040881|Cortbp2|ORF4|mKIAA1758 cortactin binding protein 2 protein-coding 0.000000 0.383085 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-161 chr14 24468823 24469023 + -1.19190 NA intron (NM_001081247, intron 15 of 30) intron (NM_001081247, intron 15 of 30) 18135 NM_001081247 218832 Mm.343610 NM_183157 ENSMUSG00000025280 Polr3a 9330175N20Rik|BC053071|RPC1|RPC155 polymerase (RNA) III (DNA directed) polypeptide A protein-coding 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1656 chr17 82757275 82757475 + -1.19230 NA Intergenic Intergenic 320850 NR_045094 100503434 Mm.187281 NR_045094 ENSMUSG00000117399 Gm19689 - predicted gene, 19689 ncRNA 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-342 chr10 10187964 10188164 + -1.19230 NA Intergenic Intergenic 284335 NM_001127353 215772 Mm.246573 NM_172547 ENSMUSG00000050994 Adgb 9130014G24Rik androglobin protein-coding 0.005000 0.373134 69(AGATTATATTGCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-562 chr9 67955610 67955810 + -1.19230 NA exon (NM_177184, exon 66 of 85) exon (NM_177184, exon 66 of 85) 70004 NR_045745 434412 Mm.490707 NR_045745 ENSMUSG00000111841 Gm20745 - predicted gene, 20745 ncRNA 0.005000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1118 chr14 58374290 58374490 + -1.19230 NA Intergenic Intergenic 301704 NM_013518 14180 Mm.8846 NM_013518 ENSMUSG00000021974 Fgf9 Eks fibroblast growth factor 9 protein-coding 0.010000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-500 chr10 102972161 102972361 + -1.19230 NA Intergenic Intergenic 56516 NM_172553 216285 Mm.19287 NM_172553 ENSMUSG00000036602 Alx1 AI314867|C130005I02|Cart1 ALX homeobox 1 protein-coding 0.005000 0.338308 25(TATAACTATGCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-614 chr11 47525194 47525394 + -1.19230 NA Intergenic Intergenic -145969 NM_011891 24052 Mm.34175 NM_011891 ENSMUSG00000020354 Sgcd 35DAG|A530047J11Rik|AI504364|AW547581|SG-delta|delta-SG sarcoglycan, delta (dystrophin-associated glycoprotein) protein-coding 0.005000 0.427861 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-97 chr11 47525224 47525424 + -1.19230 NA Intergenic Intergenic -145999 NM_011891 24052 Mm.34175 NM_011891 ENSMUSG00000020354 Sgcd 35DAG|A530047J11Rik|AI504364|AW547581|SG-delta|delta-SG sarcoglycan, delta (dystrophin-associated glycoprotein) protein-coding 0.010000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-78 chr10 102972148 102972348 + -1.19230 NA Intergenic Intergenic 56529 NM_172553 216285 Mm.19287 NM_172553 ENSMUSG00000036602 Alx1 AI314867|C130005I02|Cart1 ALX homeobox 1 protein-coding 0.005000 0.353234 38(TATAACTATGCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3509 chr9 30044552 30044752 + -1.19230 NA Intergenic Intergenic -81383 NM_001357598 235106 Mm.283138 NM_172290 ENSMUSG00000059974 Ntm 6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390 neurotrimin protein-coding 0.005000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3726 chrX 96605592 96605792 + -1.19230 NA Intergenic MTE2b-int|LTR|ERVL-MaLR -107776 NM_029536 76206 Mm.256065 NM_029536 ENSMUSG00000031210 Gpr165 6530406P05Rik G protein-coupled receptor 165 protein-coding 0.005000 0.398010 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-215 chr15 90819126 90819326 + -1.19230 NA Intergenic Intergenic 79250 NR_033583 20738 Mm.431547 NR_033583 ENSMUSG00000116210 Spn-ps Cd43-ps sialophorin, pseudogene pseudo 0.025000 0.393035 48(CATGTAAATGCATA,+,0.00) 78(TTTAAAATAACAATGC,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-276 chr18 49234842 49235042 + -1.19230 NA Intergenic Intergenic -288347 NR_033785 67321 Mm.245802 NR_033785 ENSMUSG00000100297 1700044K03Rik - RIKEN cDNA 1700044K03 gene ncRNA 0.010000 0.353234 78(ATATGCATAGCTAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1768 chr18 54176332 54176532 + -1.19230 NA Intergenic Intergenic -245863 NR_040338 77433 Mm.159919 NR_040338 ENSMUSG00000096982 Redrum 9430076G02Rik Redrum, erythroid developmental long intergenic non-protein coding transcript ncRNA 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3563 chr9 67955707 67955907 + -1.19230 NA intron (NM_177184, intron 66 of 84) intron (NM_177184, intron 66 of 84) 69907 NR_045745 434412 Mm.490707 NR_045745 ENSMUSG00000111841 Gm20745 - predicted gene, 20745 ncRNA 0.010000 0.412935 -9(CCTTTGATATGGAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-250 chr17 21478856 21479056 + -1.19230 NA Intergenic Intergenic -10032 NM_013843 24132 Mm.42140 NM_013843 ENSMUSG00000057409 Zfp53 D030067O06Rik|KRAZ1|Zfp-53|Zfp118|zfas8 zinc finger protein 53 protein-coding 0.005000 0.328358 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-193 chr15 17760936 17761136 + -1.19272 NA Intergenic Intergenic 608591 NR_045711 70886 Mm.399021 NR_045711 ENSMUSG00000098150 4921515E04Rik - RIKEN cDNA 4921515E04 gene ncRNA 0.010000 0.338308 41(TATGTATATGTATT,+,0.00) -19(TGAATGTTTTGCAAAT,+,0.00),34(CTCTTTTTATGTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1262 chr15 17760930 17761130 + -1.19272 NA Intergenic Intergenic 608597 NR_045711 70886 Mm.399021 NR_045711 ENSMUSG00000098150 4921515E04Rik - RIKEN cDNA 4921515E04 gene ncRNA 0.010000 0.338308 47(TATGTATATGTATT,+,0.00) -13(TGAATGTTTTGCAAAT,+,0.00),40(CTCTTTTTATGTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3430 chr8 106126665 106126865 + -1.19272 NA intron (NM_001368796, intron 10 of 10) intron (NM_001368796, intron 10 of 10) -8635 NR_040344 69771 Mm.393274 NR_040344 1810019D21Rik - RIKEN cDNA 1810019D21 gene ncRNA 0.000000 0.373134 -71(CTTTTTTCTATCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-411 chr10 51285229 51285429 + -1.19337 NA Intergenic Intergenic -195283 NM_001291892 14727 Mm.439661 NM_008147 ENSMUSG00000112023 Lilr4b Gp49a|gp49 leukocyte immunoglobulin-like receptor, subfamily B, member 4B protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1706 chr18 26516187 26516387 + -1.19393 NA Intergenic Intergenic -762130 NM_001362308 108013 Mm.266435 NM_133195 ENSMUSG00000024268 Celf4 A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik CUGBP, Elav-like family member 4 protein-coding 0.005000 0.398010 48(TCTTTATCTTGAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1487 chr16 57614926 57615126 + -1.19393 NA Intergenic Intergenic 4240 NR_162788 114482837 NR_162788 Mir1970b mmu-mir-1970b microRNA mir-1970b ncRNA 0.015000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-535 chr10 124288845 124289045 + -1.19393 NA Intergenic Intergenic -180129 NR_028310 75030 Mm.159403 NR_028310 ENSMUSG00000112364 4930503E24Rik - eukaryotic translation initiation factor 3, subunit I pseudogene pseudo 0.025000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3239 chr7 133057410 133057610 + -1.19393 NA intron (NM_009980, intron 2 of 10) intron (NM_009980, intron 2 of 10) 24350 NM_001347623 13017 Mm.246240 NM_009980 ENSMUSG00000030970 Ctbp2 AA407280|D7Ertd45e|Gtrgeo6|Ribeye C-terminal binding protein 2 protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2729 chr5 14195351 14195551 + -1.19393 NA intron (NM_011348, intron 4 of 16) intron (NM_011348, intron 4 of 16) 170175 NM_011348 20349 Mm.134093 NM_011348 ENSMUSG00000063531 Sema3e 6430702L12|AA408817|Semah|mKIAA0331 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E protein-coding 0.000000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3122 chr7 58411693 58411893 + -1.19393 NA Intergenic Intergenic -246409 NM_009728 11982 Mm.135129 NM_009728 ENSMUSG00000025324 Atp10a Atp10c|pfatp ATPase, class V, type 10A protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1722 chr18 32054946 32055146 + -1.19393 NA Intergenic Intergenic -12688 NM_173441 73473 Mm.66853 NM_173441 ENSMUSG00000024384 Iws1 1700069O15Rik|3000008H23|AL117927|AW214353 IWS1, SUPT6 interacting protein protein-coding 0.000000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1070 chr14 15804947 15805147 + -1.19393 NA Intergenic Intergenic -366060 NM_146052 218763 Mm.138039 NM_146052 ENSMUSG00000045201 Lrrc3b BC019794|LRP15 leucine rich repeat containing 3B protein-coding 0.010000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3606 chr9 91609934 91610134 + -1.19393 NA Intergenic Intergenic 241062 NM_009576 22774 Mm.8062 NM_009576 ENSMUSG00000036972 Zic4 - zinc finger protein of the cerebellum 4 protein-coding 0.020000 0.457711 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique chr1 6427960 6428160 + -1.19393 NA Intergenic Intergenic -59171 NM_001244692 240690 Mm.234612 NM_173868 ENSMUSG00000033740 St18 AV348974|Myt3|NZF-3|Nzf3|mKIAA0535 suppression of tumorigenicity 18 protein-coding 0.000000 0.343284 -54(CATCAATATTCATG,+,0.00),-54(CATCAATATTCATG,-,0.00) 9(ATTTACTTGACTATAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1337 chr15 58430573 58430773 + -1.19393 NA exon (NM_145959, exon 11 of 24) exon (NM_145959, exon 11 of 24) 15205 NM_145959 210998 Mm.3224 NM_145959 ENSMUSG00000037119 Fam91a1 AV220772|BC033609|D15Ertd621e|SKIN|mKIAA0493 family with sequence similarity 91, member A1 protein-coding 0.010000 0.363184 -73(ATTTTTTCCTTCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-29 chr1 141097676 141097876 + -1.19393 NA Intergenic Intergenic -441374 NR_040604 75910 Mm.483845 NR_040604 ENSMUSG00000102368 4930590L20Rik - RIKEN cDNA 4930590L20 gene ncRNA 0.000000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2112 chr2 125029938 125030138 + -1.19393 NA Intergenic Intergenic -38089 NM_175034 317750 Mm.330538 NM_175034 ENSMUSG00000035183 Slc24a5 F630045L20Rik|JSX|NCKX5|NCX5|Oca6 solute carrier family 24, member 5 protein-coding 0.010000 0.522388 8(GAATATTCATGCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3231 chr7 129631562 129631762 + -1.19393 NA intron (NM_172255, intron 24 of 28) intron (NM_172255, intron 24 of 28) 39799 NM_172255 207425 Mm.229323 NM_172255 ENSMUSG00000042055 Wdr11 2900055P10Rik|AW489876|Brwd2|mKIAA1351 WD repeat domain 11 protein-coding 0.005000 0.482587 11(GTTTCCATAACTAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2 chr1 6427860 6428060 + -1.19393 NA Intergenic Intergenic -59271 NM_001244692 240690 Mm.234612 NM_173868 ENSMUSG00000033740 St18 AV348974|Myt3|NZF-3|Nzf3|mKIAA0535 suppression of tumorigenicity 18 protein-coding 0.000000 0.422886 46(CATCAATATTCATG,+,0.00),46(CATCAATATTCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2750 chr5 29132991 29133191 + -1.19393 NA Intergenic Intergenic -62902 NM_001289757 56874 Mm.87352 NM_021470 ENSMUSG00000029130 Rnf32 1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2 ring finger protein 32 protein-coding 0.015000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-781 chr12 45661426 45661626 + -1.19393 NA Intergenic Intergenic -587043 NM_144552 217517 Mm.285400 NM_144552 ENSMUSG00000046314 Stxbp6 BC024598|C85317 syntaxin binding protein 6 (amisyn) protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2387 chr3 114195525 114195725 + -1.19393 NA intron (NM_007729, intron 57 of 66) RLTR28|LTR|ERVL 165085 NM_007729 12814 Mm.209715 NM_007729 ENSMUSG00000027966 Col11a1 C530001D20Rik|cho collagen, type XI, alpha 1 protein-coding 0.005000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3657 chr9 117156037 117156237 + -1.19462 NA intron (NM_001172123, intron 1 of 14) intron (NM_001172123, intron 1 of 14) 96346 NM_001172126 207181 Mm.326411 NM_178660 ENSMUSG00000039607 Rbms3 6720477E09Rik|8430436O14Rik RNA binding motif, single stranded interacting protein protein-coding 0.010000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-771 chr12 39699949 39700149 + -1.19462 NA Intergenic Intergenic 337327 NM_007487 11861 Mm.12723 NM_007487 ENSMUSG00000047446 Arl4a AI467555|Arl4 ADP-ribosylation factor-like 4A protein-coding 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2151 chr2 142560109 142560309 + -1.19462 NA Intergenic Intergenic 341255 NM_001355123 16558 Mm.251934 NM_001081133 ENSMUSG00000038844 Kif16b 8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590 kinesin family member 16B protein-coding 0.000000 0.393035 -47(CATAAATTATTCACT,+,0.00),-47(CATAAATTATTCACT,-,0.00) 22(CCTTAGTCATTGTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3177 chr7 92041015 92041215 + -1.19462 NA intron (NM_011807, intron 11 of 22) intron (NM_011807, intron 11 of 22) -21279 NM_001243046 23859 Mm.147213 NM_011807 ENSMUSG00000052572 Dlg2 A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93 discs large MAGUK scaffold protein 2 protein-coding 0.000000 0.393035 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-221 chr16 29972805 29973005 + -1.19496 NA intron (NR_037689, intron 1 of 5) MIRb|SINE|MIR 6219 NR_037689 328657 Mm.425982 NM_001033403 ENSMUSG00000075286 Gm1968 - predicted gene 1968 ncRNA 0.000000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-191 chr1 109812956 109813156 + -1.19496 NA Intergenic Intergenic -169844 NM_001316743 241201 Mm.213407 NM_172853 ENSMUSG00000026312 Cdh7 9330156F07Rik|CDH7L1 cadherin 7, type 2 protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-989 chr13 81260636 81260836 + -1.19502 NA intron (NM_054053, intron 85 of 89) intron (NM_054053, intron 85 of 89) 296662 NR_015587 319983 Mm.343027 NR_015587 ENSMUSG00000097098 9330111N05Rik - RIKEN cDNA 9330111N05 gene ncRNA 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-492 chr10 100947210 100947410 + -1.19502 NA Intergenic Intergenic -205675 NR_152765 102639396 Mm.404529 NR_152765 Gm35722 - predicted gene, 35722 ncRNA 0.000000 0.328358 -85(TAATTCCTTTGCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-927 chr13 28847448 28847648 + -1.19502 NA intron (NR_045054, intron 2 of 7) intron (NR_045054, intron 2 of 7) 37874 NR_045053 72518 Mm.37454 NR_045053 2610307P16Rik AI666457 RIKEN cDNA 2610307P16 gene ncRNA 0.015000 0.393035 35(CATTAAAATGCATT,+,0.00) 12(TCTTTTTAAAGCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-134 chr13 28847491 28847691 + -1.19840 NA intron (NR_045054, intron 2 of 7) intron (NR_045054, intron 2 of 7) 37831 NR_045053 72518 Mm.37454 NR_045053 2610307P16Rik AI666457 RIKEN cDNA 2610307P16 gene ncRNA 0.010000 0.378109 -8(CATTAAAATGCATT,+,0.00) -31(TCTTTTTAAAGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3497 chr9 23341201 23341401 + -1.19840 NA intron (NM_028472, intron 6 of 14) Lx5c|LINE|L1 118225 NM_028472 73230 Mm.335020 NM_028472 ENSMUSG00000031963 Bmper 3110056H04Rik|CV-2|Crim3|Cv2 BMP-binding endothelial regulator protein-coding 0.000000 0.313433 -42(ATTTGCCTGAAAATCT,-,0.00),-16(TTTTTTTTTTTTAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1243 chr15 8949846 8950046 + -1.19891 NA Intergenic Lx8|LINE|L1 -18003 NM_198024 223332 Mm.321371 NM_198024 ENSMUSG00000048424 Ranbp3l C130037N17Rik RAN binding protein 3-like protein-coding 0.005000 0.358209 -89(ATTTCAAACAGAATGA,-,0.00),-34(ATGTGAATGAGAATCT,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-413 chr4 98636867 98637067 + -1.19891 NA intron (NM_001005787, intron 5 of 15) intron (NM_001005787, intron 5 of 15) 63788 NR_151609 102638531 NR_151609 Gm35073 - predicted gene, 35073 ncRNA 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3031 chr6 99343947 99344147 + -1.19891 NA intron (NM_053202, intron 1 of 18) intron (NM_053202, intron 1 of 18) -77532 NM_001197321 108655 Mm.234965 NM_053202 ENSMUSG00000030067 Foxp1 3110052D19Rik|4932443N09Rik|AI461938|AW494214 forkhead box P1 protein-coding 0.005000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2652 chr4 98636858 98637058 + -1.19891 NA intron (NM_001005787, intron 5 of 15) intron (NM_001005787, intron 5 of 15) 63797 NR_151609 102638531 NR_151609 Gm35073 - predicted gene, 35073 ncRNA 0.005000 0.412935 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-355 chr3 60389105 60389305 + -1.19891 NA Intergenic Intergenic -83625 NM_001253713 56758 Mm.255723 NM_020007 ENSMUSG00000027763 Mbnl1 Mbnl|mKIAA0428 muscleblind like splicing factor 1 protein-coding 0.010000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3733 chrX 108728217 108728417 + -1.19891 NA Intergenic Intergenic 106029 NM_001081477 382236 Mm.100112 NM_001081477 ENSMUSG00000063663 Brwd3 Brodl|D030064D06Rik|Gm10452|Gm596 bromodomain and WD repeat domain containing 3 protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-639 chr11 63711352 63711552 + -1.19891 NA Intergenic Intergenic 210832 NM_018805 54710 Mm.274426 NM_018805 ENSMUSG00000070407 Hs3st3b1 3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 protein-coding 0.000000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2654 chr4 99163487 99163687 + -1.19891 NA Intergenic Intergenic -30347 NM_175029 242557 Mm.241663 NM_175029 ENSMUSG00000028550 Atg4c Apg4-C|Apg4c|Atg4cl|Autl1 autophagy related 4C, cysteine peptidase protein-coding 0.000000 0.373134 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-154 chr13 105582782 105582982 + -1.19938 NA Intergenic Intergenic 139189 NM_008308 15550 Mm.4716 NM_008308 ENSMUSG00000021721 Htr1a Gpcr18 5-hydroxytryptamine (serotonin) receptor 1A protein-coding 0.005000 0.303483 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1522 chr16 75877564 75877764 + -1.19938 NA intron (NM_023380, intron 4 of 7) intron (NM_023380, intron 4 of 7) 31602 NM_023380 67742 Mm.131406 NM_023380 ENSMUSG00000022876 Samsn1 4930571B16Rik|930571B16Rik|Hacs1|SLy2 SAM domain, SH3 domain and nuclear localization signals, 1 protein-coding 0.000000 0.313433 -48(ATCTGAATGACACACA,-,0.00),79(CTTTGAATAACAGAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-692 chr11 99703784 99703984 + -1.19938 NA Intergenic RLTR22_Mus|LTR|ERVK -37924 NM_026834 68768 Mm.416844 NM_026834 ENSMUSG00000075566 Krtap4-6 1110054P19Rik keratin associated protein 4-6 protein-coding 0.005000 0.378109 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-524 chr8 71316508 71316708 + -1.19993 NA intron (NM_015742, intron 3 of 39) RLTR12B|LTR|ERVK 43894 NM_001142323 17925 Mm.33779 NM_015742 ENSMUSG00000004677 Myo9b - myosin IXb protein-coding 0.000000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1541 chr16 85423413 85423613 + -1.20206 NA Intergenic Intergenic 126860 NM_144853 224405 Mm.213203 NM_144853 ENSMUSG00000041134 Cyyr1 - cysteine and tyrosine-rich protein 1 protein-coding 0.010000 0.363184 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-435 chr5 66032054 66032254 + -1.20206 NA intron (NM_178446, intron 3 of 6) intron (NM_178446, intron 3 of 6) -27869 NR_027961 231253 Mm.436542 NM_177679 ENSMUSG00000054598 9130230L23Rik - RIKEN cDNA 9130230L23 gene ncRNA 0.000000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-446 chr5 96662439 96662639 + -1.20206 NA intron (NM_175473, intron 29 of 73) intron (NM_175473, intron 29 of 73) -130846 NM_013470 11745 Mm.7214 NM_013470 ENSMUSG00000029484 Anxa3 Anx3 annexin A3 protein-coding 0.005000 0.353234 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-563 chr9 68862074 68862274 + -1.20422 NA intron (NM_013646, intron 1 of 10) intron (NM_013646, intron 1 of 10) 96828 NR_033299 320440 Mm.483129 NM_177159 9530091C08Rik - RIKEN cDNA 9530091C08 gene ncRNA 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-857 chr12 100445356 100445556 + -1.20422 NA intron (NM_001033213, intron 5 of 19) intron (NM_001033213, intron 5 of 19) 75366 NM_001033213 104718 Mm.295441 NM_001033213 ENSMUSG00000033530 Ttc7b AA408451|Ttc7l1 tetratricopeptide repeat domain 7B protein-coding 0.015000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3212 chr7 115832169 115832369 + -1.20422 NA intron (NM_001025559, intron 2 of 15) intron (NM_001025559, intron 2 of 15) -7559 NM_001277327 20679 Mm.323365 NM_011445 ENSMUSG00000051910 Sox6 AI987981|SOX-LZ SRY (sex determining region Y)-box 6 protein-coding 0.005000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1537 chr16 85137343 85137543 + -1.20422 NA intron (NM_007471, intron 1 of 15) intron (NM_007471, intron 1 of 15) 36264 NM_001198826 11820 Mm.277585 NM_007471 ENSMUSG00000022892 App Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp amyloid beta (A4) precursor protein protein-coding 0.010000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-105 chr11 97949852 97950052 + -1.20422 NA intron (NM_028199, intron 7 of 13) B4A|SINE|B4 36494 NM_001163608 72324 Mm.39617 NM_028199 ENSMUSG00000017417 Plxdc1 2410003I07Rik|AI848450|Tem7 plexin domain containing 1 protein-coding 0.015000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-756 chr12 30970316 30970516 + -1.20422 NA Intergenic Lx10|LINE|L1 58747 NR_110343 24057 Mm.218624 NM_013709 ENSMUSG00000020669 Sh3yl1 AI314953|Ray|YSC84 Sh3 domain YSC-like 1 protein-coding 0.000000 0.417910 8(TATGTATATGCAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1833 chr19 10730420 10730620 + -1.20422 NA intron (NM_007650, intron 1 of 10) L1ME1|LINE|L1 8454 NM_007650 12507 Mm.779 NM_007650 ENSMUSG00000024669 Cd5 Ly-1|Ly-12|Ly-A|Lyt-1 CD5 antigen protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2997 chr6 73977645 73977845 + -1.20422 NA Intergenic Intergenic -369072 NR_157242 102634075 Mm.78553 NR_157242 ENSMUSG00000107441 Gm31747 - predicted gene, 31747 ncRNA 0.010000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-689 chr11 97949857 97950057 + -1.20422 NA intron (NM_028199, intron 7 of 13) intron (NM_028199, intron 7 of 13) 36489 NM_001163608 72324 Mm.39617 NM_028199 ENSMUSG00000017417 Plxdc1 2410003I07Rik|AI848450|Tem7 plexin domain containing 1 protein-coding 0.015000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-124 chr12 92916409 92916609 + -1.20462 NA Intergenic Intergenic 528314 NR_126436 75295 Mm.243878 NR_126436 ENSMUSG00000113164 4930559C10Rik - RIKEN cDNA 4930559C10 gene ncRNA 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2204 chr2 181999515 181999715 + -1.20462 NA intron (NM_001205282, intron 5 of 5) intron (NM_001205282, intron 5 of 5) 8389 NM_001205282 672125 Mm.489571 NM_001205282 ENSMUSG00000098505 Gm14496 - predicted gene 14496 protein-coding 0.000000 0.358209 -20(TTTTGCATGAGTAACA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-188 chr15 9715669 9715869 + -1.20462 NA intron (NM_001305042, intron 8 of 36) intron (NM_001305042, intron 8 of 36) 33099 NM_001305042 320277 Mm.127822 NM_177123 ENSMUSG00000072663 Spef2 C230086A09Rik sperm flagellar 2 protein-coding 0.005000 0.318408 42(TCTTTCTTATTGAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-915 chr13 19542991 19543191 + -1.20462 NA Intergenic Intergenic -38724 NR_131037 319466 NR_131037 ENSMUSG00000114189 9330199G10Rik - RIKEN cDNA 9330199G10 gene ncRNA 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-502 chr10 103459494 103459694 + -1.20462 NA Intergenic Lx9|LINE|L1 91786 NM_001358821 103098 Mm.458408 NM_175328 ENSMUSG00000019894 Slc6a15 AA536730|AI326450|AI326451|v7-3 solute carrier family 6 (neurotransmitter transporter), member 15 protein-coding 0.005000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-13 chr1 62018151 62018351 + -1.20462 NA intron (NM_001081050, intron 3 of 22) intron (NM_001081050, intron 3 of 22) 117858 NR_151537 105243940 NR_151537 Pard3bos2 Gm12747 par-3 family cell polarity regulator beta, opposite strand 2 ncRNA 0.000000 0.388060 67(GATTTGTGATTTATAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-429 chr5 48262334 48262534 + -1.20462 NA intron (NR_111900, intron 28 of 35) intron (NR_111900, intron 28 of 35) 38492 NR_029798 723822 NR_029798 ENSMUSG00000065603 Mir218-1 Mirn218-1|mir-218-1 microRNA 218-1 ncRNA 0.020000 0.368159 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-187 chr15 8950135 8950335 + -1.20462 NA Intergenic Lx8|LINE|L1 -17714 NM_198024 223332 Mm.321371 NM_198024 ENSMUSG00000048424 Ranbp3l C130037N17Rik RAN binding protein 3-like protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1521 chr16 75114671 75114871 + -1.20462 NA Intergenic Intergenic -22001 NM_001358493 268902 Mm.171736 NM_175549 ENSMUSG00000052516 Robo2 2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568 roundabout guidance receptor 2 protein-coding 0.005000 0.388060 -79(ATATGCAAATCAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3581 chr9 80808933 80809133 + -1.20462 NA Intergenic Intergenic -343595 NM_022016 63859 Mm.422780 NM_022016 ENSMUSG00000032343 Impg1 A930015H12Rik|IMP150|SPACR interphotoreceptor matrix proteoglycan 1 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1245 chr15 9715677 9715877 + -1.20462 NA intron (NM_001305042, intron 8 of 36) intron (NM_001305042, intron 8 of 36) 33091 NM_001305042 320277 Mm.127822 NM_177123 ENSMUSG00000072663 Spef2 C230086A09Rik sperm flagellar 2 protein-coding 0.005000 0.313433 34(TCTTTCTTATTGAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1740 chr18 40435951 40436151 + -1.20462 NA intron (NM_026135, intron 2 of 2) intron (NM_026135, intron 2 of 2) 179052 NM_026135 383348 Mm.76366 NM_026135 ENSMUSG00000051401 Kctd16 4930434H12Rik|Gm1267 potassium channel tetramerisation domain containing 16 protein-coding 0.015000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1506 chr16 66852281 66852481 + -1.20566 NA intron (NM_001145977, intron 2 of 8) intron (NM_001145977, intron 2 of 8) 195263 NR_040512 75501 Mm.394300 NR_040512 ENSMUSG00000092599 1700010K23Rik - RIKEN cDNA 1700010K23 gene ncRNA 0.005000 0.313433 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-83 chr10 112614174 112614374 + -1.20566 NA Intergenic Intergenic -112652 NR_040579 69355 Mm.84337 NR_040579 ENSMUSG00000100314 1700010J16Rik - RIKEN cDNA 1700010J16 gene ncRNA 0.005000 0.353234 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-213 chr15 63364509 63364709 + -1.20636 NA Intergenic Intergenic 114999 NR_045279 432958 Mm.255105 NR_045279 ENSMUSG00000115520 Gm20740 - predicted gene, 20740 ncRNA 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-605 chr11 42499494 42499694 + -1.20636 NA intron (NM_001362646, intron 5 of 9) Lx4A|LINE|L1 78393 NM_001347314 14401 Mm.338723 NM_008070 ENSMUSG00000007653 Gabrb2 AI834970|C030002O17Rik|C030021G16Rik|Gabrab2|Gabrb-2 gamma-aminobutyric acid (GABA) A receptor, subunit beta 2 protein-coding 0.005000 0.353234 -81(CTTGCAAAATTCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1961 chr2 21557672 21557872 + -1.20636 NA intron (NM_001004761, intron 3 of 10) Lx10|LINE|L1 190205 NM_001004761 241263 Mm.166647 NM_175706 ENSMUSG00000045967 Gpr158 5330427M13Rik|mKIAA1136 G protein-coupled receptor 158 protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2338 chr3 84800931 84801131 + -1.20636 NA Intergenic Lx9|LINE|L1 -14546 NM_001177773 50754 Mm.196475 NM_080428 ENSMUSG00000028086 Fbxw7 1110001A17Rik|AGO|Cdc4|Fbw7|Fbwd6|Fbx30|Fbxo30|Fbxw6|SEL-10 F-box and WD-40 domain protein 7 protein-coding 0.000000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3275 chr8 11136716 11136916 + -1.20636 NA Intergenic Intergenic -127887 NM_001081212 384783 Mm.407207 NM_001081212 ENSMUSG00000038894 Irs2 Irs-2 insulin receptor substrate 2 protein-coding 0.015000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-119 chr12 50901911 50902111 + -1.20636 NA Intergenic Intergenic -103145 NR_126468 75494 Mm.416848 NR_126468 ENSMUSG00000111986 1700008C04Rik - RIKEN cDNA 1700008C04 gene ncRNA 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3409 chr8 93852322 93852522 + -1.20636 NA intron (NM_001113384, intron 2 of 7) intron (NM_001113384, intron 2 of 7) -38867 NR_026888 75809 Mm.443272 NM_029449 4930488L21Rik 4930452J22Rik RIKEN cDNA 4930488L21 gene ncRNA 0.020000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-831 chr12 81817124 81817324 + -1.20636 NA Intergenic Intergenic -36054 NM_001174107 338372 Mm.35284 NM_177395 ENSMUSG00000042724 Map3k9 E130314H24Rik|Mlk1|Prke1 mitogen-activated protein kinase kinase kinase 9 protein-coding 0.015000 0.472637 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-59 chr10 49736387 49736587 + -1.20636 NA intron (NM_001358866, intron 2 of 16) ORR1F|LTR|ERVL-MaLR 51450 NM_001358866 14806 Mm.185993 NM_010349 ENSMUSG00000056073 Grik2 AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2 glutamate receptor, ionotropic, kainate 2 (beta 2) protein-coding 0.010000 0.373134 -98(ACATTATCATGTTCAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-794 chr12 50901968 50902168 + -1.20636 NA Intergenic Intergenic -103088 NR_126468 75494 Mm.416848 NR_126468 ENSMUSG00000111986 1700008C04Rik - RIKEN cDNA 1700008C04 gene ncRNA 0.025000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1202 chr14 108878041 108878241 + -1.20636 NA Intergenic Intergenic 36098 NM_199065 76965 Mm.257268 NM_199065 ENSMUSG00000075478 Slitrk1 3200001I04Rik SLIT and NTRK-like family, member 1 protein-coding 0.010000 0.417910 28(TCATTTCTATGCAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-159 chr1 92030952 92031152 + -1.20636 NA intron (NM_207225, intron 3 of 26) RSINE1|SINE|B4 149289 NM_207225 208727 Mm.318567 NM_207225 ENSMUSG00000026313 Hdac4 4932408F19Rik|HD4 histone deacetylase 4 protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-588 chr11 29839917 29840117 + -1.20636 NA intron (NM_146016, intron 10 of 41) intron (NM_146016, intron 10 of 41) -14349 NM_176829 216622 Mm.443260 NM_176829 ENSMUSG00000078157 4931440F15Rik Fem1ab RIKEN cDNA 4931440F15 gene protein-coding 0.010000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1131 chr14 65135638 65135838 + -1.20636 NA Intergenic Intergenic -37632 NM_001360385 54616 Mm.103748 NM_018788 ENSMUSG00000021978 Extl3 2900009G18Rik|AU040105|Ext1l|mKIAA0519 exostoses (multiple)-like 3 protein-coding 0.010000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1171 chr14 86360131 86360331 + -1.20636 NA Intergenic Intergenic 114261 NR_040457 75155 Mm.399239 NR_040457 ENSMUSG00000115271 4930529K09Rik 4930507G21Rik RIKEN cDNA 4930529K09 gene ncRNA 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2803 chr5 72464364 72464564 + -1.20761 NA intron (NM_016869, intron 2 of 21) RMER15-int|LTR|ERVL 39744 NM_016869 53419 Mm.332425 NM_016869 ENSMUSG00000005220 Corin AV273130|Lrp4 corin, serine peptidase protein-coding 0.000000 0.353234 -53(CATGTATATTCATG,+,0.00),-53(CATGTATATTCATG,-,0.00) -48(ATATTCATGAAAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1855 chr19 21956063 21956263 + -1.20788 NA Intergenic L1_Mus3|LINE|L1 177823 NM_031997 83921 Mm.329776 NM_031997 ENSMUSG00000024754 Cemip2 Tmem2 cell migration inducing hyaluronidase 2 protein-coding 0.000000 0.328358 -58(CCAGTATCATGCAATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-766 chr12 36216456 36216656 + -1.20788 NA intron (NM_001361098, intron 5 of 8) B4|SINE|B4 1662 NM_027699 71156 Mm.250837 NM_027699 ENSMUSG00000020545 Lrrc72 1700108M19Rik|4933421E18Rik leucine rich repeat containing 72 protein-coding 0.020000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2367 chr3 102422532 102422732 + -1.20788 NA Intergenic L2|LINE|L2 -47287 NM_001112698 18049 Mm.1259 NM_013609 ENSMUSG00000027859 Ngf Ngfb|beta-NGF nerve growth factor protein-coding 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2345 chr3 90633011 90633211 + -1.20788 NA Intergenic Intergenic 20217 NM_011313 20200 Mm.100144 NM_011313 ENSMUSG00000001025 S100a6 2A9|5B10|CALCYCLIN|Cacy|PRA S100 calcium binding protein A6 (calcyclin) protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2782 chr5 54129609 54129809 + -1.20788 NA Intergenic L1MA8|LINE|L1 131186 NM_054083 116873 Mm.265985 NM_054083 ENSMUSG00000039156 Stim2 - stromal interaction molecule 2 protein-coding 0.015000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1405 chr16 3934596 3934796 + -1.20788 NA intron (NM_029738, intron 10 of 11) intron (NM_029738, intron 10 of 11) 25687 NM_029738 76779 Mm.458921 NM_029738 ENSMUSG00000014232 Cluap1 2310030D15Rik|2610111M03Rik clusterin associated protein 1 protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-987 chr13 78713736 78713936 + -1.20788 NA Intergenic RSINE1|SINE|B4 -514963 NM_010151 13865 Mm.439653 NM_010151 ENSMUSG00000069171 Nr2f1 COUP-TF1|COUP-TFI|COUPTFA|EAR-3|EAR3|Erbal3|SVP44|Tcfcoup1 nuclear receptor subfamily 2, group F, member 1 protein-coding 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3273 chr8 11084236 11084436 + -1.20788 NA Intergenic Intergenic -75407 NM_001081212 384783 Mm.407207 NM_001081212 ENSMUSG00000038894 Irs2 Irs-2 insulin receptor substrate 2 protein-coding 0.000000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-297 chr1 181047292 181047492 + -1.20788 NA Intergenic Intergenic -3845 NM_001033819 619326 Mm.355174 NM_001033819 ENSMUSG00000038768 9130409I23Rik - RIKEN cDNA 9130409I23 gene protein-coding 0.010000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3323 chr8 41035889 41036089 + -1.20788 NA intron (NM_001005863, intron 5 of 13) intron (NM_001005863, intron 5 of 13) 5942 NM_001005865 102103 Mm.149438 NM_001005863 ENSMUSG00000045636 Mtus1 AI481402|ATBP135|Atip1|B430010I23Rik|B430305I03Rik|C85752|Cctsg1-440|MD44|MTSG1|mKIAA1288 mitochondrial tumor suppressor 1 protein-coding 0.020000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3603 chr9 89973791 89973991 + -1.20788 NA intron (NM_011245, intron 8 of 26) intron (NM_011245, intron 8 of 26) 64116 NM_001357743 19417 Mm.44561 NM_011245 ENSMUSG00000032356 Rasgrf1 AI844718|CDC25|CDC25Mm|Gnrp|Grf1|Grfbeta|P190-A|Ras-GRF1|p190|p190RhoGEF RAS protein-specific guanine nucleotide-releasing factor 1 protein-coding 0.025000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1555 chr16 92385033 92385233 + -1.20788 NA Intergenic (TCTA)n|Simple_repeat|Simple_repeat -2450 NR_105054 101056236 Mm.149108 NR_105054 ENSMUSG00000116693 Gm29805 - predicted gene, 29805 ncRNA 0.000000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3695 chrX 50880162 50880362 + -1.20788 NA intron (NM_001313744, intron 4 of 11) MLT1A0|LTR|ERVL-MaLR 38891 NM_001313744 70415 Mm.46254 NM_133729 ENSMUSG00000031112 Stk26 2610018G03Rik|Mst4 serine/threonine kinase 26 protein-coding 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-302 chr1 184261469 184261669 + -1.20788 NA Intergenic Intergenic 227188 NM_022019 63953 Mm.404024 NM_022019 ENSMUSG00000039384 Dusp10 2610306G15Rik|AI158871|MKP-5|MKP5 dual specificity phosphatase 10 protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-244 chr1 144343294 144343494 + -1.20788 NA Intergenic Intergenic -94290 NM_015811 50778 Mm.103701 NM_015811 ENSMUSG00000026358 Rgs1 BL34 regulator of G-protein signaling 1 protein-coding 0.015000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-269 chr18 35457128 35457328 + -1.21039 NA intron (NM_030749, intron 1 of 9) intron (NM_030749, intron 1 of 9) 12724 NM_001360814 81500 Mm.291482 NM_030749 ENSMUSG00000024357 Sil1 1810057E01Rik|AI042831|wz endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae) protein-coding 0.000000 0.313433 -80(ACATACTTTTGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1730 chr18 35457038 35457238 + -1.21039 NA intron (NM_030749, intron 1 of 9) intron (NM_030749, intron 1 of 9) 12814 NM_001360814 81500 Mm.291482 NM_030749 ENSMUSG00000024357 Sil1 1810057E01Rik|AI042831|wz endoplasmic reticulum chaperone SIL1 homolog (S. cerevisiae) protein-coding 0.005000 0.358209 10(ACATACTTTTGCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-543 chr8 114188334 114188534 + -1.21150 NA Intergenic Intergenic -17206 NM_173016 270097 Mm.334825 NM_173016 ENSMUSG00000046844 Vat1l 9430073I07|AI427515|mKIAA1576 vesicle amine transport protein 1 like protein-coding 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3448 chr8 114188282 114188482 + -1.21150 NA Intergenic Intergenic -17258 NM_173016 270097 Mm.334825 NM_173016 ENSMUSG00000046844 Vat1l 9430073I07|AI427515|mKIAA1576 vesicle amine transport protein 1 like protein-coding 0.010000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1280 chr15 26970939 26971139 + -1.21223 NA Intergenic Intergenic -75475 NM_176959 448987 Mm.253378 NM_176959 ENSMUSG00000043556 Fbxl7 AL023057|D230018M15Rik|FBL7|Fbl6 F-box and leucine-rich repeat protein 7 protein-coding 0.000000 0.368159 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-196 chr15 26970982 26971182 + -1.21223 NA Intergenic Lx10|LINE|L1 -75518 NM_176959 448987 Mm.253378 NM_176959 ENSMUSG00000043556 Fbxl7 AL023057|D230018M15Rik|FBL7|Fbl6 F-box and leucine-rich repeat protein 7 protein-coding 0.000000 0.348259 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-81 chr10 109000921 109001121 + -1.21362 NA intron (NM_001358504, intron 1 of 11) intron (NM_001358504, intron 1 of 11) 8090 NM_001358502 20979 Mm.289702 NM_009306 ENSMUSG00000035864 Syt1 AW124717|G630098F17Rik|SytI synaptotagmin I protein-coding 0.005000 0.313433 -15(AATGATTCATTCATG,-,0.00),-8(CATTCATGATTCATT,+,0.00),-4(CATGATTCATTCATG,-,0.00),3(CATTCATGATTCATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-514 chr10 109000934 109001134 + -1.21362 NA intron (NM_001358504, intron 1 of 11) intron (NM_001358504, intron 1 of 11) 8077 NM_001358502 20979 Mm.289702 NM_009306 ENSMUSG00000035864 Syt1 AW124717|G630098F17Rik|SytI synaptotagmin I protein-coding 0.005000 0.318408 -28(AATGATTCATTCATG,-,0.00),-21(CATTCATGATTCATT,+,0.00),-17(CATGATTCATTCATG,-,0.00),-10(CATTCATGATTCATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-560 chr11 17883551 17883751 + -1.21482 NA Intergenic Intergenic 70224 NM_001362970 68145 Mm.178684 NM_026576 ENSMUSG00000016984 Etaa1 5730466H23Rik|AA672646 Ewing tumor-associated antigen 1 protein-coding 0.005000 0.368159 58(ATAACAATGACAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3399 chr8 87037806 87038006 + -1.21482 NA Intergenic Intergenic -152648 NM_030563 80750 Mm.25117 NM_030563 ENSMUSG00000031652 N4bp1 AI481586|C81621 NEDD4 binding protein 1 protein-coding 0.025000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1683 chr18 12912558 12912758 + -1.21482 NA intron (NM_207530, intron 5 of 27) RLTR17|LTR|ERVK 29183 NM_207530 64291 Mm.259470 NM_020573 ENSMUSG00000044252 Osbpl1a G430090F17Rik|Gm753|ORP-1|Osbpl1b oxysterol binding protein-like 1A protein-coding 0.010000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-370 chr10 25740846 25741046 + -1.21482 NA Intergenic Lx7|LINE|L1 96491 NR_045349 73803 Mm.258921 NR_045349 ENSMUSG00000112444 4930401C15Rik - RIKEN cDNA 4930401C15 gene ncRNA 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1382 chr15 92116350 92116550 + -1.21482 NA intron (NM_001358051, intron 2 of 25) MT2A|LTR|ERVL -11678 NM_007727 12805 Mm.4911 NM_007727 ENSMUSG00000055022 Cntn1 AW495098|CNTN|F3cam|usl contactin 1 protein-coding 0.000000 0.398010 -76(GCTATGTCATGCAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1338 chr15 58576647 58576847 + -1.21513 NA intron (NM_001370912, intron 15 of 40) intron (NM_001370912, intron 15 of 40) 66699 NM_001370912 631797 NM_001370912 ENSMUSG00000037106 Fer1l6 EG631797 fer-1-like 6 (C. elegans) protein-coding 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2521 chr4 16170150 16170350 + -1.21513 NA intron (NR_045765, intron 1 of 6) intron (NR_045765, intron 1 of 6) 6140 NR_045765 100415915 Mm.387180 NR_045765 ENSMUSG00000085112 A530072M11Rik - RIKEN cDNA gene A530072M11 ncRNA 0.015000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-417 chr4 111843912 111844112 + -1.21513 NA Intergenic L1_Mur3|LINE|L1 58784 NM_145551 230612 Mm.26630 NM_145551 ENSMUSG00000028544 Slc5a9 AI159731|SGLT4 solute carrier family 5 (sodium/glucose cotransporter), member 9 protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2518 chr4 14769064 14769264 + -1.21597 NA intron (NM_028499, intron 4 of 7) intron (NM_028499, intron 4 of 7) 26888 NM_028499 73314 Mm.52613 NM_028499 ENSMUSG00000023151 Lrrc69 1700034K16Rik leucine rich repeat containing 69 protein-coding 0.010000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2211 chr3 6932536 6932736 + -1.21627 NA Intergenic Intergenic -312193 NM_027048 69347 Mm.45822 NM_027048 ENSMUSG00000069118 1700008P02Rik - RIKEN cDNA 1700008P02 gene protein-coding 0.010000 0.417910 -74(TAATTCTGTTGCACAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-175 chr1 104191541 104191741 + -1.21627 NA Intergenic Lx5|LINE|L1 -576879 NM_011800 23836 Mm.103640 NM_011800 ENSMUSG00000050840 Cdh20 Cdh7 cadherin 20 protein-coding 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2455 chr3 137103340 137103540 + -1.21627 NA Intergenic B4A|SINE|B4 -186177 NR_163863 0.000000 0.313433 -58(TTTTTCTTTTTCAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1123 chr14 60526933 60527133 + -1.21627 NA Intergenic B3|SINE|B2 -107672 NM_001033272 219140 Mm.149776 NM_001033272 ENSMUSG00000021990 Spata13 C79050|ESTM11|X83327|mFLJ00298 spermatogenesis associated 13 protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1899 chr19 45307287 45307487 + -1.21627 NA Intergenic Intergenic -56347 NM_001037758 12234 Mm.119717 NM_009771 ENSMUSG00000025217 Btrc Beta-Trcp1|E3RS-IkappaB|E3RSIkappaB|FWD1|Fbw1a|HOS|SCF b-TRCP|Slimb|b-TrCP|beta-TrCP beta-transducin repeat containing protein protein-coding 0.015000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1762 chr18 51028201 51028401 + -1.21627 NA Intergenic Intergenic -89597 NM_001081224 71373 Mm.63546 NM_001081224 ENSMUSG00000073565 Prr16 5430406M13Rik|AI607429 proline rich 16 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-712 chr11 115647540 115647740 + -1.21627 NA intron (NM_008163, intron 4 of 5) intron (NM_008163, intron 4 of 5) -19345 NM_001252396 67283 Mm.383426 NM_026071 ENSMUSG00000020744 Slc25a19 2900089E13Rik|DNC|MUP1|TPC solute carrier family 25 (mitochondrial thiamine pyrophosphate carrier), member 19 protein-coding 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-636 chr11 62845805 62846005 + -1.21627 NA Intergenic BGLII_B|LTR|ERVK -1218 NM_001291441 213980 Mm.482259 NM_001033669 ENSMUSG00000090173 Fbxw10 Fbw10|HREP|SM25H2|SM2SH2 F-box and WD-40 domain protein 10 protein-coding 0.005000 0.492537 31(ATTAACATCAAAATAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1620 chr17 59421395 59421595 + -1.21627 NA Intergenic Intergenic -408173 NM_001368393 67993 Mm.36507 NM_026497 ENSMUSG00000024228 Nudt12 0610016O18Rik nudix (nucleoside diphosphate linked moiety X)-type motif 12 protein-coding 0.015000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3495 chr9 22510959 22511159 + -1.21627 NA intron (NM_001360258, intron 4 of 21) ORR1C2|LTR|ERVL-MaLR 35344 NM_001360259 319845 Mm.176725 NM_178415 ENSMUSG00000035919 Bbs9 E130103I17Rik Bardet-Biedl syndrome 9 (human) protein-coding 0.005000 0.467662 -43(GTTTGAATAAGAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3244 chr7 135354578 135354778 + -1.21627 NA Intergenic Intergenic -55689 NM_183193 270004 Mm.132547 NM_183193 ENSMUSG00000048377 Foxi2 B130055A05Rik forkhead box I2 protein-coding 0.010000 0.323383 -66(TCTTTGCTATGCTGAT,+,0.00),83(TTTTACATAACTAAAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-557 chr11 16943900 16944100 + -1.21627 NA intron (NR_110421, intron 2 of 5) ORR1B1|LTR|ERVL-MaLR 7282 NR_110422 72735 Mm.268598 NR_015469 Eldr 2810442I21Rik|4930500E12Rik|Fabl Egfr long non-coding downstream RNA ncRNA 0.010000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1035 chr13 110747270 110747470 + -1.21627 NA Intergenic Intergenic -156129 NR_131193 75139 Mm.490931 NR_131193 ENSMUSG00000114472 Gm38397 - predicted gene, 38397 ncRNA 0.010000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1845 chr19 16106360 16106560 + -1.21627 NA Intergenic B4A|SINE|B4 -26224 NM_008139 14682 Mm.439701 NM_008139 ENSMUSG00000024639 Gnaq 1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI guanine nucleotide binding protein, alpha q polypeptide protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1341 chr15 61142740 61142940 + -1.21627 NA Intergenic L1MC5a|LINE|L1 -221570 NM_001081067 117586 Mm.291499 NM_001081067 ENSMUSG00000022347 A1bg C44 alpha-1-B glycoprotein protein-coding 0.015000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3077 chr6 134252177 134252377 + -1.21627 NA intron (NM_007961, intron 5 of 7) intron (NM_007961, intron 5 of 7) -144052 NM_025778 66813 Mm.474472 NM_025778 ENSMUSG00000030200 Bcl2l14 4930452K23Rik|4933405K19Rik|9030625M01Rik|AI429211|Bclg BCL2-like 14 (apoptosis facilitator) protein-coding 0.020000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2064 chr2 97157017 97157217 + -1.21627 NA intron (NM_001363047, intron 4 of 8) intron (NM_001363047, intron 4 of 8) -310540 NM_001289744 241568 Mm.241682 NM_178725 ENSMUSG00000050587 Lrrc4c 6430556C10Rik|NGL-1 leucine rich repeat containing 4C protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2245 chr3 39348361 39348561 + -1.21627 NA Intergenic Intergenic 461521 NM_183221 329628 Mm.316210 NM_183221 ENSMUSG00000046743 Fat4 6030410K14Rik|9430004M15 FAT atypical cadherin 4 protein-coding 0.015000 0.343284 -54(TGTTTCTCATTCTGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1829 chr19 10272744 10272944 + -1.21627 NA intron (NM_198114, intron 1 of 19) intron (NM_198114, intron 1 of 19) 32033 NM_198114 269060 Mm.329718 NM_198114 ENSMUSG00000035735 Dagla Nsddr diacylglycerol lipase, alpha protein-coding 0.025000 0.636816 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3693 chrX 49078097 49078297 + -1.21627 NA intron (NM_145951, intron 4 of 15) intron (NM_145951, intron 4 of 15) -200484 NM_001085499 209005 Mm.336054 NM_001085499 ENSMUSG00000079606 Gm595 - predicted gene 595 protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-671 chr11 85714450 85714650 + -1.21627 NA intron (NR_045875, intron 1 of 5) intron (NR_045875, intron 1 of 5) 5194 NR_045875 71489 Mm.442482 NR_045875 ENSMUSG00000086199 Bcas3os1 8430403D17Rik breast carcinoma amplified sequence 3, opposite strand 1 ncRNA 0.010000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3353 chr8 59120363 59120563 + -1.21627 NA Intergenic Lx6|LINE|L1 208708 NM_173411 234290 Mm.39244 NM_173411 ENSMUSG00000049946 BC030500 - cDNA sequence BC030500 protein-coding 0.005000 0.393035 37(TTTTGTATAACAAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2468 chr3 143007331 143007531 + -1.21627 NA Intergenic (T)n|Simple_repeat|Simple_repeat -23183 NM_029164 102636203 Mm.416931 NM_029164 4930519L02Rik - RIKEN cDNA 4930519L02 gene protein-coding 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1302 chr15 43500330 43500530 + -1.21627 NA intron (NM_025736, intron 5 of 10) intron (NM_025736, intron 5 of 10) 23201 NM_025736 66736 Mm.244512 NM_025736 ENSMUSG00000022337 Emc2 4921531G14Rik|AV060620|AW209495|Ttc35 ER membrane protein complex subunit 2 protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2106 chr2 120514251 120514451 + -1.21627 NA intron (NM_011743, intron 17 of 21) intron (NM_011743, intron 17 of 21) 37442 NM_001109761 12335 Mm.458021 NM_007601 ENSMUSG00000079110 Capn3 AI323605|Capa-3|Capa3|Lp82|p94 calpain 3 protein-coding 0.005000 0.447761 -90(GTCTGCATCAGAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-118 chr1 70516526 70516726 + -1.21627 NA intron (NM_025728, intron 7 of 7) MT2B|LTR|ERVL -209089 NM_001310658 320460 Mm.360649 NM_177164 ENSMUSG00000045648 Vwc2l A830006F12Rik|Brl von Willebrand factor C domain-containing protein 2-like protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3143 chr7 75082984 75083184 + -1.21627 NA Intergenic Lx6|LINE|L1 52873 NR_131122 75205 Mm.399304 NR_131122 ENSMUSG00000108803 4930533N22Rik Gm44904 RIKEN cDNA 4930533N22 gene ncRNA 0.000000 0.338308 -33(CTATTCTCATGCATTT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1618 chr17 59170960 59171160 + -1.21627 NA Intergenic Intergenic -157738 NM_001368393 67993 Mm.36507 NM_026497 ENSMUSG00000024228 Nudt12 0610016O18Rik nudix (nucleoside diphosphate linked moiety X)-type motif 12 protein-coding 0.000000 0.363184 3(CTTTACATAACAAGAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3337 chr8 45661815 45662015 + -1.21627 NA promoter-TSS (NM_001310708) promoter-TSS (NM_001310708) -78 NM_001310708 234214 Mm.211096 NM_172752 ENSMUSG00000031626 Sorbs2 2010203O03Rik|9430041O17Rik|A530071H08|Argbp2|mKIAA0777|nArgBP2 sorbin and SH3 domain containing 2 protein-coding 0.020000 0.447761 47(TCCTTGTAATGTAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-876 chr12 118753989 118754189 + -1.21627 NA Intergenic Intergenic -92240 NM_177082 320145 Mm.51682 NM_177082 ENSMUSG00000048562 Sp8 D930049B17Rik|mBtd trans-acting transcription factor 8 protein-coding 0.000000 0.358209 -97(CATGAATATTTATG,+,0.00),-97(CATGAATATTTATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1685 chr18 13317265 13317465 + -1.21627 NA Intergenic Intergenic 310375 NM_153087 225192 Mm.207073 NM_153087 ENSMUSG00000037346 Hrh4 AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R histamine receptor H4 protein-coding 0.005000 0.348259 21(ATTTTCATTACAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique chr1 4827497 4827697 + -1.21688 NA intron (NM_001355712, intron 2 of 7) Lx7|LINE|L1 19774 NM_001355712 18777 Mm.299955 NM_008866 ENSMUSG00000025903 Lypla1 APT-1|Gm39587|LPL-I|Pla1a lysophospholipase 1 protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2148 chr2 141229185 141229385 + -1.21688 NA intron (NM_001013802, intron 5 of 18) intron (NM_001013802, intron 5 of 18) -557809 NM_001172160 71436 Mm.426781 NM_178382 ENSMUSG00000051379 Flrt3 5530600M07Rik|C430047I10Rik|mKIAA1469 fibronectin leucine rich transmembrane protein 3 protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-129 chr1 72419043 72419243 + -1.21688 NA Intergenic Intergenic 111722 NM_009533 22596 Mm.246952 NM_009533 ENSMUSG00000026187 Xrcc5 AI314015|CTC85|CTCBF|Ku80|Ku86 X-ray repair complementing defective repair in Chinese hamster cells 5 protein-coding 0.010000 0.462687 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-231 chr16 68730225 68730425 + -1.21688 NA Intergenic MLTR25A|LTR|ERVK 1070056 NR_130991 78110 Mm.211406 NR_130991 ENSMUSG00000107073 4930428D20Rik Gm43265 RIKEN cDNA 4930428D20 gene ncRNA 0.005000 0.368159 -51(TTTTGCATAGAAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2328 chr3 80506584 80506784 + -1.21688 NA Intergenic Intergenic 296151 NR_152148 14800 Mm.220224 NM_013540 ENSMUSG00000033981 Gria2 GluA2|GluR-B|Glur-2|Glur2|gluR-K2 glutamate receptor, ionotropic, AMPA2 (alpha 2) protein-coding 0.005000 0.278607 -22(ATATTTTTATGCAAAA,+,0.00),-16(TTATGCAAAACAATAT,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-514 chr8 10023622 10023822 + -1.21688 NA intron (NM_033622, intron 4 of 6) intron (NM_033622, intron 4 of 6) 17089 NM_033622 24099 Mm.28835 NM_033622 ENSMUSG00000031497 Tnfsf13b BAFF|BLyS|D8Ertd387e|TALL-1|TALL1|THANK|TNFSF20|Tnlg7a|zTNF4 tumor necrosis factor (ligand) superfamily, member 13b protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1510 chr16 68730212 68730412 + -1.21688 NA Intergenic MLTR25A|LTR|ERVK 1070069 NR_130991 78110 Mm.211406 NR_130991 ENSMUSG00000107073 4930428D20Rik Gm43265 RIKEN cDNA 4930428D20 gene ncRNA 0.005000 0.378109 -38(TTTTGCATAGAAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-779 chr12 43827246 43827446 + -1.21688 NA Intergenic RMER15|LTR|ERVL 382722 NM_013760 27362 Mm.27432 NM_013760 ENSMUSG00000014905 Dnajb9 AA408011|AA673251|AA673481|AW556981|ERdj4|Mdg1|mDj7 DnaJ heat shock protein family (Hsp40) member B9 protein-coding 0.005000 0.412935 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-439 chr5 72464396 72464596 + -1.21761 NA intron (NM_016869, intron 2 of 21) RMER15-int|LTR|ERVL 39712 NM_016869 53419 Mm.332425 NM_016869 ENSMUSG00000005220 Corin AV273130|Lrp4 corin, serine peptidase protein-coding 0.000000 0.383085 -85(CATGTATATTCATG,+,0.00),-85(CATGTATATTCATG,-,0.00) -80(ATATTCATGAAAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2804 chr5 72464758 72464958 + -1.21761 NA intron (NM_016869, intron 2 of 21) RMER15-int|LTR|ERVL 39350 NM_016869 53419 Mm.332425 NM_016869 ENSMUSG00000005220 Corin AV273130|Lrp4 corin, serine peptidase protein-coding 0.010000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-118 chr12 45791829 45792029 + -1.21996 NA Intergenic Intergenic -717446 NM_144552 217517 Mm.285400 NM_144552 ENSMUSG00000046314 Stxbp6 BC024598|C85317 syntaxin binding protein 6 (amisyn) protein-coding 0.005000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-367 chr10 24211266 24211466 + -1.22031 NA Intergenic Intergenic -12151 NM_021509 59012 Mm.285934 NM_021509 ENSMUSG00000020000 Moxd1 3230402N08Rik|MNCb-5203 monooxygenase, DBH-like 1 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2110 chr2 123800097 123800297 + -1.22031 NA Intergenic Intergenic -289772 NM_001290997 214968 Mm.330536 NM_172537 ENSMUSG00000027200 Sema6d 1110067B02Rik|AA409156|D330011G23|mKIAA1479 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D protein-coding 0.000000 0.388060 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-567 chr9 85985715 85985915 + -1.22031 NA Intergenic Intergenic 142963 NM_001164792 21983 Mm.20864 NM_011627 ENSMUSG00000035274 Tpbg 5T4|AW495680|WAIF1 trophoblast glycoprotein protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3593 chr9 85985717 85985917 + -1.22031 NA Intergenic Intergenic 142965 NM_001164792 21983 Mm.20864 NM_011627 ENSMUSG00000035274 Tpbg 5T4|AW495680|WAIF1 trophoblast glycoprotein protein-coding 0.015000 0.487562 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-182 chr14 99040826 99041026 + -1.22161 NA intron (NM_175245, intron 1 of 2) Lx9|LINE|L1 5210 NM_175245 76789 Mm.38912 NM_175245 ENSMUSG00000033186 Mzt1 2410129H14Rik|AI120158|Mozart1 mitotic spindle organizing protein 1 protein-coding 0.010000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2143 chr2 139310423 139310623 + -1.22344 NA Intergenic L1_Mur3|LINE|L1 -183390 NM_001356507 228677 Mm.100450 NM_175467 ENSMUSG00000039092 Sptlc3 C130053K05Rik serine palmitoyltransferase, long chain base subunit 3 protein-coding 0.000000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1577 chr17 11141878 11142078 + -1.22406 NA intron (NM_016694, intron 2 of 11) intron (NM_016694, intron 2 of 11) 301619 NM_016694 50873 Mm.311110 NM_016694 ENSMUSG00000023826 Prkn Park2 parkin RBR E3 ubiquitin protein ligase protein-coding 0.000000 0.343284 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-367 chr3 82210041 82210241 + -1.22406 NA Intergenic Intergenic -64195 NM_021896 60596 Mm.143831 NM_021896 ENSMUSG00000033910 Gucy1a1 1200016O07Rik|GCS-alpha-1|GCS-alpha-3|Gucy1a3|sGC-alpha1 guanylate cyclase 1, soluble, alpha 1 protein-coding 0.015000 0.298507 81(GTATTTTATTTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1599 chr17 34964878 34965078 + -1.22406 NA Intergenic Intergenic -5740 NM_010478 15511 Mm.372314 NM_010478 ENSMUSG00000090877 Hspa1b HSP70B1|Hsp70|Hsp70-1|Hsp70.1|hsp68 heat shock protein 1B protein-coding 0.000000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1958 chr2 20353186 20353386 + -1.22427 NA intron (NM_001081006, intron 2 of 21) intron (NM_001081006, intron 2 of 21) 63373 NM_001081006 208618 Mm.237935 NM_029895 ENSMUSG00000036617 Etl4 6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt enhancer trap locus 4 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-200 chr1 113001855 113002055 + -1.22447 NA Intergenic Intergenic -585037 NR_157044 102635484 NR_157044 Gm32810 Gm18406 predicted gene, 32810 ncRNA 0.005000 0.383085 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-480 chr6 95882393 95882593 + -1.22447 NA Intergenic Intergenic -163647 NM_011507 20917 Mm.371585 NM_011507 ENSMUSG00000061838 Suclg2 AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG succinate-Coenzyme A ligase, GDP-forming, beta subunit protein-coding 0.000000 0.388060 -16(TCACTTTCATGCTAAT,+,0.00),-10(TCATGCTAATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1112 chr14 54114662 54114862 + -1.22447 NA Intergenic Intergenic 139167 NM_010015 13135 Mm.319038 NM_010015 ENSMUSG00000022174 Dad1 AI323713 defender against cell death 1 protein-coding 0.005000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-666 chr11 84113540 84113740 + -1.22447 NA intron (NM_172562, intron 4 of 15) intron (NM_172562, intron 4 of 15) 15928 NM_172562 217031 Mm.45159 NM_172562 ENSMUSG00000018651 Tada2a AV319371|D030022J10Rik|Tada2l transcriptional adaptor 2A protein-coding 0.020000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1743 chr18 42246173 42246373 + -1.22447 NA intron (NM_134137, intron 4 of 31) intron (NM_134137, intron 4 of 31) 15852 NM_134137 107045 Mm.312170 NM_134137 ENSMUSG00000024493 Lars 2310045K21Rik|3110009L02Rik|AW536573|leuRS leucyl-tRNA synthetase protein-coding 0.010000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1469 chr16 49510420 49510620 + -1.22447 NA Intergenic MTE-int|LTR|ERVL-MaLR -188774 NM_028680 73916 Mm.241276 NM_028680 ENSMUSG00000032965 Ift57 4833420A15Rik|Esrrbl1|Hippi|MHS4R2 intraflagellar transport 57 protein-coding 0.010000 0.338308 -27(AGATTATTTTGTAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-484 chr6 110146113 110146313 + -1.22447 NA Intergenic MLTR11B|LTR|ERVK -499299 NM_001346640 108073 Mm.240881 NM_177328 ENSMUSG00000056755 Grm7 6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7 glutamate receptor, metabotropic 7 protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-802 chr12 57930570 57930770 + -1.22447 NA Intergenic Intergenic -267759 NR_131112 217601 Mm.488987 NR_131112 BC042761 - cDNA sequence BC042761 ncRNA 0.000000 0.343284 -36(ATTTGAATTAAAATGA,-,0.00),53(ATTTAAATGAGAATTC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3070 chr6 126287295 126287495 + -1.22447 NA non-coding (NR_045480, exon 4 of 4) non-coding (NR_045480, exon 4 of 4) 41291 NR_045480 100038574 Mm.399353 NR_045480 ENSMUSG00000107623 Gm10415 - predicted gene 10415 ncRNA 0.015000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3198 chr7 109010729 109010929 + -1.22447 NA promoter-TSS (NM_021885) promoter-TSS (NM_021885) -51 NM_021885 22141 Mm.439722 NM_021885 ENSMUSG00000031028 Tub rd5|tub tubby bipartite transcription factor protein-coding 0.145000 0.796020 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-522 chr8 54427568 54427768 + -1.22447 NA Intergenic Lx9|LINE|L1 102330 NM_029701 76687 Mm.86437 NM_029701 ENSMUSG00000054408 Spcs3 1810011E08Rik|SPC22/23 signal peptidase complex subunit 3 homolog (S. cerevisiae) protein-coding 0.005000 0.308458 -19(TCATTGTCTTTCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-166 chr14 54114599 54114799 + -1.22447 NA Intergenic Intergenic 139230 NM_010015 13135 Mm.319038 NM_010015 ENSMUSG00000022174 Dad1 AI323713 defender against cell death 1 protein-coding 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3684 chrX 21425820 21426020 + -1.22447 NA Intergenic RLTR25B|LTR|ERVK -58704 NM_007429 11609 Mm.2679 NM_007429 ENSMUSG00000068122 Agtr2 AI316812|AW107640 angiotensin II receptor, type 2 protein-coding 0.000000 0.368159 -83(CCTGTCTCTTGCAGAT,+,0.00),41(CTTTACATTGCAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2638 chr4 91905996 91906196 + -1.22447 NA Intergenic Intergenic 241125 NM_027034 69314 Mm.55891 NM_027034 ENSMUSG00000028533 Izumo3 1700011H22Rik IZUMO family member 3 protein-coding 0.010000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3267 chr8 5933554 5933754 + -1.22447 NA Intergenic L1MB5|LINE|L1 -828367 NM_011388 20494 Mm.3500 NM_011388 ENSMUSG00000023073 Slc10a2 9130221J18Rik|AI605518|ASBT|IBAT|ISBT solute carrier family 10, member 2 protein-coding 0.005000 0.383085 -69(ATAAGCATGAGTAATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-486 chr10 97978448 97978648 + -1.22447 NA Intergenic Intergenic -11458 NR_033537 100038699 Mm.467933 NR_033537 ENSMUSG00000074776 Gm10754 - predicted gene 10754 ncRNA 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3029 chr6 95882353 95882553 + -1.22447 NA Intergenic Intergenic -163607 NM_011507 20917 Mm.371585 NM_011507 ENSMUSG00000061838 Suclg2 AF171077|AW556404|D6Wsu120e|G-SCS|GTPSCS|SCS-betaG succinate-Coenzyme A ligase, GDP-forming, beta subunit protein-coding 0.005000 0.447761 24(TCACTTTCATGCTAAT,+,0.00),30(TCATGCTAATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1009 chr13 93895254 93895454 + -1.22471 NA intron (NM_009712, intron 6 of 7) intron (NM_009712, intron 6 of 7) 104577 NR_049198 100885837 NR_049198 ENSMUSG00000093480 Mir5624 Gm25075|mir-5624|mmu-mir-5624 microRNA 5624 ncRNA 0.000000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-396 chr10 37108517 37108717 + -1.22599 NA Intergenic Intergenic 30309 NM_008538 17118 Mm.30059 NM_008538 ENSMUSG00000069662 Marcks Macs|PKCSL myristoylated alanine rich protein kinase C substrate protein-coding 0.000000 0.388060 6(TCATTGTCATGTTGAT,+,0.00),21(TGATTGTGATGCAAAC,+,0.00),71(CATTTTCTATGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3053 chr6 112301515 112301715 + -1.22599 NA intron (NM_144799, intron 1 of 5) Lx8|LINE|L1 -11296 NR_045986 100503613 Mm.136719 NM_177012 5031434C07Rik - RIKEN cDNA 5031434C07 gene ncRNA 0.010000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2450 chr3 134540422 134540622 + -1.22779 NA Intergenic L1VL4|LINE|L1 -116887 NR_040600 75208 Mm.84580 NR_040600 ENSMUSG00000105765 4930539C22Rik - RIKEN cDNA 4930539C22 gene ncRNA 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1433 chr16 24622601 24622801 + -1.22779 NA intron (NM_178665, intron 5 of 12) intron (NM_178665, intron 5 of 12) 93387 NR_038091 624582 Mm.439775 NR_038091 Morf4l1-ps1 A730098P11Rik mortality factor 4 like 1, pseudogene 1 pseudo 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3397 chr8 86720891 86721091 + -1.22779 NA Intergenic Intergenic -24708 NR_027829 666945 Mm.391806 NR_027829 Gm10638 - predicted gene 10638 ncRNA 0.005000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2695 chr4 130884380 130884580 + -1.22779 NA Intergenic Intergenic -28836 NM_010686 16792 Mm.271868 NM_010686 ENSMUSG00000028581 Laptm5 E3|Stra13 lysosomal-associated protein transmembrane 5 protein-coding 0.000000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2079 chr2 107255542 107255742 + -1.22779 NA Intergenic Intergenic -34947 NM_021275 16492 Mm.142718 NM_021275 ENSMUSG00000042604 Kcna4 Kv1.4 potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding 0.015000 0.338308 -21(TCTTCATATGCATT,+,0.00) 6(ATTTGCTTGACAAGTG,-,0.00),58(ATTTCAATAAAAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-204 chr1 115355022 115355222 + -1.22779 NA Intergenic L1_Mur1|LINE|L1 -329615 NM_001077425 636808 Mm.101576 NM_001077425 ENSMUSG00000070695 Cntnap5a Caspr5-1|EG636808 contactin associated protein-like 5A protein-coding 0.000000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1868 chr19 29838240 29838440 + -1.22779 NA Intergenic Intergenic -25366 NM_177721 240614 Mm.125503 NM_177721 ENSMUSG00000074909 Ranbp6 C630001B19 RAN binding protein 6 protein-coding 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2628 chr4 85288367 85288567 + -1.22779 NA intron (NM_019535, intron 1 of 8) Lx8|LINE|L1 83011 NM_019535 20404 Mm.143603 NM_019535 ENSMUSG00000028488 Sh3gl2 9530001L19Rik|AI120490|AW555077|B930049H17Rik|EEN-B1|SH3PA|Sh3d2a SH3-domain GRB2-like 2 protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-148 chr1 82110310 82110510 + -1.22779 NA Intergenic Intergenic -21506 NR_105762 102466629 NR_105762 ENSMUSG00000098797 Mir6344 Gm27840|mmu-mir-6344 microRNA 6344 ncRNA 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1292 chr15 34790358 34790558 + -1.22779 NA Intergenic Intergenic -46897 NM_181317 16539 Mm.71045 NM_181317 ENSMUSG00000050963 Kcns2 E130006J24Rik|Kv9.2 K+ voltage-gated channel, subfamily S, 2 protein-coding 0.000000 0.412935 -2(TTATTGTTATTGTAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-854 chr12 98317842 98318042 + -1.22779 NA Intergenic Intergenic 49307 NM_008152 14744 Mm.378924 NM_008152 ENSMUSG00000021886 Gpr65 Dig1|Gpcr25|TDAG8 G-protein coupled receptor 65 protein-coding 0.015000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-155 chr1 87574894 87575094 + -1.22779 NA intron (NM_001160164, intron 1 of 2) MLT1B|LTR|ERVL-MaLR 967 NM_001160163 23956 Mm.143717 NM_015750 ENSMUSG00000079434 Neu2 MBS|MSS|MTS neuraminidase 2 protein-coding 0.025000 0.587065 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-540 chr10 129084515 129084715 + -1.22779 NA Intergenic Intergenic -4654 NM_146318 258315 Mm.377432 NM_146318 ENSMUSG00000059762 Olfr767 MOR115-1|MOR115-4 olfactory receptor 767 protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3076 chr6 133972104 133972304 + -1.22779 NA Intergenic RMER1A|Other|Other -63496 NM_007961 14011 Mm.269995 NM_007961 ENSMUSG00000030199 Etv6 AW123102|AW557856|Tel ets variant 6 protein-coding 0.010000 0.611940 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2354 chr3 96991782 96991982 + -1.22779 NA Intergenic MER34A1|LTR|ERV1 -40520 NM_008121 14613 Mm.281816 NM_008121 ENSMUSG00000057123 Gja5 5730555N10Rik|Cnx40|Cx40|Gja-5 gap junction protein, alpha 5 protein-coding 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-743 chr12 21452022 21452222 + -1.22779 NA Intergenic Intergenic -34686 NM_011739 22630 Mm.289630 NM_011739 ENSMUSG00000076432 Ywhaq 2700028P07Rik|AA409740|AU021156|R74690 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta protein-coding 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3269 chr8 8433995 8434195 + -1.22779 NA Intergenic Intergenic 227147 NM_001368299 13642 Mm.209813 NM_010111 ENSMUSG00000001300 Efnb2 ELF-2|Epl5|Eplg5|Htk-L|LERK-5|Lerk5|NLERK-1 ephrin B2 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2735 chr5 17665093 17665293 + -1.22779 NA intron (NM_013657, intron 5 of 17) intron (NM_013657, intron 5 of 17) 90377 NM_013657 20348 Mm.5071 NM_013657 ENSMUSG00000028780 Sema3c 1110036B02Rik|SemE|Semae sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-222 chr1 127709139 127709339 + -1.22779 NA Intergenic ORR1B1-int|LTR|ERVL-MaLR -20174 NM_001033041 266645 Mm.25735 NM_001033041 ENSMUSG00000026348 Acmsd - amino carboxymuconate semialdehyde decarboxylase protein-coding 0.005000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2310 chr3 71270057 71270257 + -1.22779 NA Intergenic B1F|SINE|Alu -462866 NR_040556 625901 Mm.366028 NR_040556 ENSMUSG00000097252 Gm6634 EG625901 predicted gene 6634 ncRNA 0.000000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-811 chr12 61452273 61452473 + -1.22779 NA Intergenic Intergenic 69447 NR_045049 100504101 Mm.235026 NR_045049 ENSMUSG00000113429 Gm20063 - predicted gene, 20063 ncRNA 0.005000 0.363184 -13(ATTTGCCTGATAATTA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2232 chr3 25383063 25383263 + -1.22779 NA Intergenic Intergenic -599157 NM_001326288 635702 Mm.448351 NM_001326288 ENSMUSG00000102758 Naaladl2 2810043G22Rik|EG635702|Gm1021 N-acetylated alpha-linked acidic dipeptidase-like 2 protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1556 chr16 93369654 93369854 + -1.22779 NA promoter-TSS (NR_030429) promoter-TSS (NR_030429) 34 NR_030429 791074 NR_030429 ENSMUSG00000076457 Mir802 Mirn802|mir-802|mmu-mir-802 microRNA 802 ncRNA 0.040000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1031 chr13 107934863 107935063 + -1.22779 NA Intergenic Intergenic -44899 NM_145456 67263 Mm.490418 NM_145456 Zswim6 2900036G02Rik|mKIAA1577 zinc finger SWIM-type containing 6 protein-coding 0.015000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1941 chr2 10250493 10250693 + -1.22779 NA intron (NM_172471, intron 13 of 13) intron (NM_172471, intron 13 of 13) 97050 NM_172471 209378 Mm.313876 NM_172471 ENSMUSG00000025780 Itih5 4631408O11Rik|5430408M01Rik|E130106B02 inter-alpha (globulin) inhibitor H5 protein-coding 0.020000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2605 chr4 70983663 70983863 + -1.22779 NA Intergenic Intergenic -448835 NM_172694 230316 Mm.251188 NM_172694 ENSMUSG00000039270 Megf9 4933405H16Rik|9630025C07|Egfl5|mKIAA0818 multiple EGF-like-domains 9 protein-coding 0.005000 0.373134 -93(CTTTAAAAGAAAATAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1019 chr13 99307942 99308142 + -1.22779 NA Intergenic Intergenic 36636 NM_026873 68927 Mm.276502 NM_026873 ENSMUSG00000021650 Ptcd2 1190005P08Rik pentatricopeptide repeat domain 2 protein-coding 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3528 chr9 44292580 44292780 + -1.22779 NA Intergenic B3|SINE|B2 -4436 NM_138955 192663 Mm.101876 NM_138955 ENSMUSG00000032131 Abcg4 6430517O04Rik ATP binding cassette subfamily G member 4 protein-coding 0.005000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1028 chr13 106389189 106389389 + -1.22779 NA Intergenic Intergenic 547669 NM_029665 76582 Mm.132208 NM_029665 ENSMUSG00000042590 Ipo11 1700081H05Rik|2510001A17Rik|AI314624|AW555235|E330021B14Rik|Ranbp11 importin 11 protein-coding 0.000000 0.358209 -39(GTTAGCAAGAGAAGGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1963 chr2 22375606 22375806 + -1.22779 NA intron (NM_148413, intron 16 of 19) L1Md_F2|LINE|L1 148203 NM_148413 667663 Mm.330033 NM_148413 ENSMUSG00000025716 Myo3a 9030416P08Rik myosin IIIA protein-coding 0.010000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2895 chr5 136662877 136663077 + -1.22779 NA Intergenic Intergenic -30169 NM_001303019 59310 Mm.5178 NM_021611 ENSMUSG00000005474 Myl10 1700027I08Rik|Mylc2pl|PLRLC myosin, light chain 10, regulatory protein-coding 0.005000 0.616915 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3087 chr6 145352194 145352394 + -1.22779 NA Intergenic Intergenic -35331 NR_003625 381827 Mm.179075 NM_001001987 1700073E17Rik - ribosomal protein L7 pseudogene pseudo 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1990 chr2 45035825 45036025 + -1.22779 NA intron (NM_001355289, intron 3 of 10) intron (NM_001355289, intron 3 of 10) -12748 NR_039591 100628598 NR_039591 ENSMUSG00000092679 Mir5129 mir-5129|mmu-mir-5129|mu-mir-5129 microRNA 5129 ncRNA 0.015000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3173 chr7 89097031 89097231 + -1.22779 NA Intergenic Intergenic 241656 NM_028343 72759 Mm.208477 NM_028343 ENSMUSG00000039428 Tmem135 2810439K08Rik|AW319712|PMP52 transmembrane protein 135 protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-243 chr1 144284839 144285039 + -1.22779 NA Intergenic L1_Mus3|LINE|L1 -35835 NM_015811 50778 Mm.103701 NM_015811 ENSMUSG00000026358 Rgs1 BL34 regulator of G-protein signaling 1 protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2966 chr6 42241267 42241467 + -1.22895 NA Intergenic Intergenic -4568 NM_029555 76263 Mm.267014 NM_029555 ENSMUSG00000029864 Gstk1 0610025I19Rik|AW260476|DsbA-L glutathione S-transferase kappa 1 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2096 chr2 113758507 113758707 + -1.22895 NA promoter-TSS (NM_011824) promoter-TSS (NM_011824) 41 NM_011824 23892 Mm.166318 NM_011824 ENSMUSG00000074934 Grem1 Cktsf1b1|Drm|Grem|ld gremlin 1, DAN family BMP antagonist protein-coding 0.115000 0.661692 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-459 chr10 80036919 80037119 + -1.22895 NA intron (NM_025554, intron 3 of 6) intron (NM_025554, intron 3 of 6) 2640 NM_025554 66420 Mm.18579 NM_025554 ENSMUSG00000004667 Polr2e 2410021N14Rik|25kDa|AW208866|RPB5|XAP4 polymerase (RNA) II (DNA directed) polypeptide E protein-coding 0.020000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-122 chr1 71398212 71398412 + -1.22931 NA intron (NM_175210, intron 2 of 52) intron (NM_175210, intron 2 of 52) 16598 NM_175210 74591 Mm.159251 NM_175210 ENSMUSG00000050296 Abca12 4832428G11Rik|4833417A11Rik ATP-binding cassette, sub-family A (ABC1), member 12 protein-coding 0.020000 0.393035 -41(TCTTTATTATGCAATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1623 chr17 61146278 61146478 + -1.23053 NA Intergenic Intergenic 1734939 NM_207654 13640 Mm.7978 NM_010109 ENSMUSG00000048915 Efna5 AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS ephrin A5 protein-coding 0.020000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-453 chr10 75439615 75439815 + -1.23053 NA intron (NM_133995, intron 9 of 9) intron (NM_133995, intron 9 of 9) -9795 NR_045841 71125 Mm.399516 NR_045841 4933407G14Rik - RIKEN cDNA 4933407G14 gene ncRNA 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-226 chr1 131360001 131360201 + -1.23053 NA intron (NM_001081011, intron 5 of 22) intron (NM_001081011, intron 5 of 22) -80538 NM_019777 56489 Mm.386783 NM_019777 ENSMUSG00000042349 Ikbke AW558201|IKK-E|IKK-i|IKKepsilon|Ikki inhibitor of kappaB kinase epsilon protein-coding 0.000000 0.427861 30(TCATTGTGATGGAGAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1757 chr18 48640268 48640468 + -1.23053 NA Intergenic Intergenic 595033 NM_001025388 433182 Mm.70666 NM_001025388 ENSMUSG00000059040 Eno1b EG433182|Eno-1|Eno1|Gm5506|NNE enolase 1B, retrotransposed protein-coding 0.020000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-92 chr1 59711374 59711574 + -1.23053 NA TTS (NM_018868) TTS (NM_018868) 6666 NR_028521 100217421 NR_028521 Snord11 MBII-95 small nucleolar RNA, C/D box 11 snoRNA 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1189 chr14 97096980 97097180 + -1.23053 NA Intergenic Intergenic -578046 NM_053105 93688 Mm.308735 NM_053105 ENSMUSG00000022076 Klhl1 mKIAA1490 kelch-like 1 protein-coding 0.000000 0.268657 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2680 chr4 119955385 119955585 + -1.23053 NA intron (NM_010657, intron 1 of 8) L1MD2|LINE|L1 140807 NM_010657 16656 Mm.302758 NM_010657 ENSMUSG00000028634 Hivep3 2900056N03Rik|A130075N07|AI848000|E030045D18Rik|KBP-1|KBP1|Krc|Rc|Schnurri-3|Shn3|Zas3 human immunodeficiency virus type I enhancer binding protein 3 protein-coding 0.015000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2343 chr3 89801574 89801774 + -1.23053 NA Intergenic Intergenic 28065 NM_027315 70093 Mm.41438 NM_027315 ENSMUSG00000042572 Ube2q1 1110002C01Rik|2310012M18Rik|AI854014|Gtap|NICE-5|PRO3094|Ube2q ubiquitin-conjugating enzyme E2Q family member 1 protein-coding 0.010000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1404 chr15 103437330 103437530 + -1.23053 NA Intergenic Intergenic -7003 NM_028797 74174 Mm.325325 NM_028797 ENSMUSG00000022487 Gtsf1 1700006H03Rik|Cue110 gametocyte specific factor 1 protein-coding 0.005000 0.253731 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2684 chr4 120964889 120965089 + -1.23053 NA Intergenic Intergenic 8333 NR_105982 102465614 NR_105982 ENSMUSG00000106436 Mir7015 mmu-mir-7015 microRNA 7015 ncRNA 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-943 chr13 38012446 38012646 + -1.23053 NA intron (NM_027724, intron 9 of 12) intron (NM_027724, intron 9 of 12) -18338 NM_001360842 107513 Mm.426670 NM_025965 ENSMUSG00000021427 Ssr1 2510001K09Rik|6330400D04|AI159733|AI452176|SSR|TRAPA signal sequence receptor, alpha protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3037 chr6 103060595 103060795 + -1.23053 NA Intergenic Intergenic 266311 NR_105792 102466636 NR_105792 ENSMUSG00000098533 Mir6373 Gm27870|mmu-mir-6373 microRNA 6373 ncRNA 0.015000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2726 chr5 12971337 12971537 + -1.23053 NA Intergenic Intergenic -425347 NM_001243072 20346 Mm.372039 NM_009152 ENSMUSG00000028883 Sema3a Hsema-I|SEMA1|SemD|Semad|coll-1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A protein-coding 0.005000 0.378109 36(CCCCTTTTATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3395 chr8 85456620 85456820 + -1.23053 NA Intergenic Intergenic -23879 NM_025722 66714 Mm.272748 NM_025722 ENSMUSG00000036934 4921524J17Rik - RIKEN cDNA 4921524J17 gene protein-coding 0.025000 0.447761 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-6 chr1 27529718 27529918 + -1.23101 NA Intergenic Lx9|LINE|L1 -354228 NR_151583 433281 Mm.329306 NR_151583 ENSMUSG00000101514 Gm5524 AI875557|EG433281 predicted gene 5524 ncRNA 0.005000 0.368159 -93(TTTCTGTTATGTAAAG,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-73 chr10 93015066 93015266 + -1.23209 NA intron (NM_001347060, intron 20 of 67) intron (NM_001347060, intron 20 of 67) 66456 NM_001347060 380654 Mm.34980 NM_001347060 ENSMUSG00000020014 Cfap54 4930485B16Rik|Gm872 cilia and flagella associated protein 54 protein-coding 0.035000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3472 chr9 4639556 4639756 + -1.23209 NA intron (NM_001113181, intron 4 of 10) intron (NM_001113181, intron 4 of 10) 156578 NM_001113181 14802 Mm.209263 NM_019691 ENSMUSG00000025892 Gria4 GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1 glutamate receptor, ionotropic, AMPA4 (alpha 4) protein-coding 0.005000 0.412935 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-168 chr14 65135839 65136039 + -1.23209 NA Intergenic Intergenic -37833 NM_001360385 54616 Mm.103748 NM_018788 ENSMUSG00000021978 Extl3 2900009G18Rik|AU040105|Ext1l|mKIAA0519 exostoses (multiple)-like 3 protein-coding 0.010000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-253 chr1 149170822 149171022 + -1.23209 NA Intergenic Intergenic 751517 NM_001305632 18783 Mm.4186 NM_008869 ENSMUSG00000056220 Pla2g4a Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 0.010000 0.358209 -94(ATATACACGACAAAGT,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-84 chr10 113997083 113997283 + -1.23209 NA Intergenic Intergenic 804187 NM_146241 237553 Mm.445550 NM_146241 ENSMUSG00000050663 Trhde 9330155P21Rik TRH-degrading enzyme protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-521 chr10 113997028 113997228 + -1.23209 NA Intergenic Intergenic 804242 NM_146241 237553 Mm.445550 NM_146241 ENSMUSG00000050663 Trhde 9330155P21Rik TRH-degrading enzyme protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3719 chrX 84840614 84840814 + -1.23209 NA intron (NM_007868, intron 59 of 78) intron (NM_007868, intron 59 of 78) -207581 NM_001314034 13405 Mm.275608 NM_007868 ENSMUSG00000045103 Dmd DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke dystrophin, muscular dystrophy protein-coding 0.000000 0.333333 -66(TTTTTATTTTTTTAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-549 chr9 4639378 4639578 + -1.23209 NA intron (NM_001113181, intron 4 of 10) intron (NM_001113181, intron 4 of 10) 156756 NM_001113181 14802 Mm.209263 NM_019691 ENSMUSG00000025892 Gria4 GluA4|GluR-D|Glur-4|Glur4|Gluralpha4|spkw1 glutamate receptor, ionotropic, AMPA4 (alpha 4) protein-coding 0.005000 0.422886 -11(GTTTGCATAGTAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-861 chr12 102281483 102281683 + -1.23223 NA Intergenic L1MB8|LINE|L1 -1491 NM_177620 217835 Mm.24145 NM_177620 ENSMUSG00000044456 Rin3 6430500K07|C86933 Ras and Rab interactor 3 protein-coding 0.010000 0.422886 31(TTTACATATTCATC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2560 chr4 40487808 40488008 + -1.23223 NA intron (NR_040644, intron 5 of 6) L1MC4|LINE|L1 14778 NM_001166009 320500 Mm.156365 NM_177175 ENSMUSG00000046593 Tmem215 A930001M12Rik transmembrane protein 215 protein-coding 0.015000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2561 chr4 40487981 40488181 + -1.23223 NA intron (NR_040644, intron 5 of 6) L1MC4|LINE|L1 14951 NM_001166009 320500 Mm.156365 NM_177175 ENSMUSG00000046593 Tmem215 A930001M12Rik transmembrane protein 215 protein-coding 0.020000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3769 chrX 162622036 162622236 + -1.23223 NA intron (NR_038088, intron 4 of 5) L1MA7|LINE|L1 21522 NM_001359103 194590 Mm.442441 NM_178256 ENSMUSG00000040855 Reps2 POB1 RALBP1 associated Eps domain containing protein 2 protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1578 chr17 11142097 11142297 + -1.23223 NA intron (NM_016694, intron 2 of 11) intron (NM_016694, intron 2 of 11) 301838 NM_016694 50873 Mm.311110 NM_016694 ENSMUSG00000023826 Prkn Park2 parkin RBR E3 ubiquitin protein ligase protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-797 chr12 55806166 55806366 + -1.23223 NA intron (NM_001368814, intron 1 of 41) intron (NM_001368814, intron 1 of 41) 14901 NM_001368814 56784 Mm.292180 NM_019994 ENSMUSG00000021027 Ralgapa1 2310003F20Rik|4930400K19Rik|AI563624|GRIPE|Garnl1|Tulip1|mKIAA0884 Ral GTPase activating protein, alpha subunit 1 protein-coding 0.010000 0.462687 -91(CCTCAGGCATGCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-348 chr2 181999547 181999747 + -1.23223 NA intron (NM_001205282, intron 5 of 5) intron (NM_001205282, intron 5 of 5) 8421 NM_001205282 672125 Mm.489571 NM_001205282 ENSMUSG00000098505 Gm14496 - predicted gene 14496 protein-coding 0.000000 0.323383 -52(TTTTGCATGAGTAACA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2320 chr3 77058343 77058543 + -1.23236 NA Intergenic Intergenic 982860 NM_001253719 213262 Mm.379337 NM_178673 ENSMUSG00000034098 Fstl5 9130207J01Rik follistatin-like 5 protein-coding 0.000000 0.353234 19(ATTTCAATAAGAGTAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-696 chr11 102445506 102445706 + -1.23402 NA intron (NM_199200, intron 1 of 7) intron (NM_199200, intron 1 of 7) 2057 NM_199200 217219 Mm.259924 NM_199200 ENSMUSG00000034685 Fam171a2 - family with sequence similarity 171, member A2 protein-coding 0.010000 0.597015 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2967 chr6 42241374 42241574 + -1.23402 NA Intergenic L1ME4b|LINE|L1 -4461 NM_029555 76263 Mm.267014 NM_029555 ENSMUSG00000029864 Gstk1 0610025I19Rik|AW260476|DsbA-L glutathione S-transferase kappa 1 protein-coding 0.010000 0.363184 12(TTTTGCATAAGAAAAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-949 chr13 43904271 43904471 + -1.23553 NA Intergenic Intergenic 119259 NM_001289915 12522 Mm.57175 NM_009856 ENSMUSG00000015396 Cd83 - CD83 antigen protein-coding 0.005000 0.437811 4(GCATTATTTTGGAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3167 chr7 87204869 87205069 + -1.23553 NA Intergenic MLT1H1|LTR|ERVL-MaLR -41680 NM_001285835 50490 Mm.31748 NM_015760 ENSMUSG00000030562 Nox4 AI648021 NADPH oxidase 4 protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3668 chr9 123150786 123150986 + -1.23553 NA promoter-TSS (NM_011606) promoter-TSS (NM_011606) -60 NM_011606 21922 Mm.34588 NM_011606 ENSMUSG00000025784 Clec3b Tna C-type lectin domain family 3, member b protein-coding 0.005000 0.487562 25(TCTTTCTTTTTTACAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1867 chr19 29292634 29292834 + -1.23553 NA intron (NM_001048177, intron 12 of 23) Lx8|LINE|L1 32584 NM_013754 27356 Mm.306511 NM_013754 ENSMUSG00000050957 Insl6 RIF1 insulin-like 6 protein-coding 0.015000 0.527363 -49(CATGATTTATTTATG,+,0.00),-49(CATGATTTATTTATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2683 chr4 120242839 120243039 + -1.23553 NA Intergenic Intergenic 44322 NM_194060 329934 Mm.277090 NM_194060 ENSMUSG00000052135 Foxo6 - forkhead box O6 protein-coding 0.015000 0.656716 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1518 chr16 73370011 73370211 + -1.23553 NA Intergenic Intergenic 706962 NM_019413 19876 Mm.310772 NM_019413 ENSMUSG00000022883 Robo1 AW494633|AW742721|DUTT1|Gm310 roundabout guidance receptor 1 protein-coding 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-648 chr11 67819638 67819838 + -1.23553 NA Intergenic Intergenic 21467 NM_001013013 68460 Mm.22167 NM_001013013 ENSMUSG00000033044 Dhrs7c 1110001P11Rik|AI120487|SRP-35 dehydrogenase/reductase (SDR family) member 7C protein-coding 0.015000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2326 chr3 80207170 80207370 + -1.23553 NA Intergenic Intergenic 321340 NM_133187 68659 Mm.427274 NM_133187 ENSMUSG00000027955 Gask1b 1110032E23Rik|2210419I08Rik|AV011458|Ened|Fam198b|GaskbB golgi associated kinase 1B protein-coding 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2381 chr3 109961000 109961200 + -1.23553 NA intron (NM_030699, intron 2 of 7) intron (NM_030699, intron 2 of 7) 182372 NM_133488 80883 Mm.39262 NM_030699 ENSMUSG00000059857 Ntng1 A930010C08Rik|AI853992|Lmnt1 netrin G1 protein-coding 0.010000 0.417910 32(CCCTTGTCATGCAATG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2411 chr3 121586905 121587105 + -1.23553 NA Intergenic L1MA6|LINE|L1 -54661 NM_145394 213603 Mm.33062 NM_145394 ENSMUSG00000039865 Slc44a3 BC010552 solute carrier family 44, member 3 protein-coding 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2671 chr4 111756407 111756607 + -1.23553 NA intron (NM_026470, intron 3 of 12) intron (NM_026470, intron 3 of 12) -21090 NM_001357231 67946 Mm.275526 NM_026470 ENSMUSG00000034401 Spata6 1700062C23Rik|AI790763|Hash|KRP|Mash spermatogenesis associated 6 protein-coding 0.005000 0.298507 -75(TAATTGTCCTGCATAT,+,0.00),57(ATATACATAACATAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-961 chr13 52868187 52868387 + -1.23553 NA intron (NM_016709, intron 6 of 9) intron (NM_016709, intron 6 of 9) 61390 NM_016709 11992 Mm.252034 NM_016709 ENSMUSG00000021460 Auh C77140|W91705 AU RNA binding protein/enoyl-coenzyme A hydratase protein-coding 0.020000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1196 chr14 102492579 102492779 + -1.23553 NA Intergenic Intergenic 489953 NR_039592 100628599 NR_039592 ENSMUSG00000092901 Mir5130 mir-5130|mmu-mir-5130|mu-mir-5130 microRNA 5130 ncRNA 0.010000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-81 chr1 53940269 53940469 + -1.23553 NA intron (NM_001001883, intron 4 of 28) intron (NM_001001883, intron 4 of 28) 90945 NR_106149 102465783 NR_106149 ENSMUSG00000098443 Mir7681 Gm27806|mmu-mir-7681 microRNA 7681 ncRNA 0.020000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3682 chrX 19556804 19557004 + -1.23553 NA Intergenic Intergenic -75585 NM_207524 278255 Mm.303203 NM_207524 ENSMUSG00000068149 Tex13c3 Gm720 TEX13 family member C3 protein-coding 0.000000 0.393035 -32(TTTAACATGAAAATGA,-,0.00),-4(CCTTTGTCTTACAATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2114 chr2 125735481 125735681 + -1.23553 NA Intergenic Tigger1|DNA|TcMar-Tigger -11433 NM_199022 271849 Mm.425101 NM_199022 ENSMUSG00000035109 Shc4 6230417E10Rik|9930029B02Rik|Gm685|RaLP SHC (Src homology 2 domain containing) family, member 4 protein-coding 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-721 chr12 5119004 5119204 + -1.23656 NA intron (NM_001164493, intron 5 of 13) intron (NM_001164493, intron 5 of 13) 201751 NM_001362349 320817 Mm.210966 NM_001099628 ENSMUSG00000052812 Atad2b 1110014E10Rik|BC032887|C79189|D530031C13Rik ATPase family, AAA domain containing 2B protein-coding 0.025000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-111 chr12 5119003 5119203 + -1.23656 NA intron (NM_001164493, intron 5 of 13) intron (NM_001164493, intron 5 of 13) 201750 NM_001362349 320817 Mm.210966 NM_001099628 ENSMUSG00000052812 Atad2b 1110014E10Rik|BC032887|C79189|D530031C13Rik ATPase family, AAA domain containing 2B protein-coding 0.025000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1559 chr16 94586300 94586500 + -1.23911 NA intron (NM_001113389, intron 1 of 11) intron (NM_001113389, intron 1 of 11) 15493 NM_001113389 13548 Mm.310973 NM_007890 ENSMUSG00000022897 Dyrk1a 2310043O08Rik|D16Ertd272e|D16Ertd493e|Dyrk|Gm10783|Mnbh|Mp86|mmb dual-specificity tyrosine-(Y)-phosphorylation regulated kinase 1a protein-coding 0.005000 0.412935 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-258 chr17 76083563 76083763 + -1.23911 NA Intergenic L1MA5|LINE|L1 222640 NR_033456 100043885 Mm.127562 NR_033456 ENSMUSG00000117539 Gm4710 - predicted gene 4710 ncRNA 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-96 chr1 62018245 62018445 + -1.23911 NA intron (NM_001081050, intron 3 of 22) intron (NM_001081050, intron 3 of 22) 117764 NR_151537 105243940 NR_151537 Pard3bos2 Gm12747 par-3 family cell polarity regulator beta, opposite strand 2 ncRNA 0.010000 0.427861 -27(GATTTGTGATTTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1584 chr17 15904433 15904633 + -1.23911 NA Intergenic Intergenic -77947 NM_178615 68799 Mm.293466 NM_178615 ENSMUSG00000048027 Rgmb 1110059F19Rik|DRAGON repulsive guidance molecule family member B protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2325 chr3 78846691 78846891 + -1.23911 NA Intergenic Intergenic 298955 NM_001310536 76089 Mm.31220 NM_001099624 ENSMUSG00000062232 Rapgef2 5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP Rap guanine nucleotide exchange factor (GEF) 2 protein-coding 0.015000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-497 chr7 73003052 73003252 + -1.23911 NA Intergenic ORR1C1|LTR|ERVL-MaLR 98916 NR_046024 625243 Mm.261798 NR_046024 ENSMUSG00000108383 Gm6567 - predicted gene 6567 ncRNA 0.000000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-135 chr13 31889006 31889206 + -1.23911 NA intron (NM_146041, intron 9 of 10) intron (NM_146041, intron 9 of 10) 82460 NM_008592 17300 Mm.12949 NM_008592 ENSMUSG00000050295 Foxc1 FREAC3|Fkh1|Mf1|Mf4|ch|fkh-1|frkhda forkhead box C1 protein-coding 0.000000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2672 chr4 111844021 111844221 + -1.23954 NA Intergenic L1_Mur3|LINE|L1 58675 NM_145551 230612 Mm.26630 NM_145551 ENSMUSG00000028544 Slc5a9 AI159731|SGLT4 solute carrier family 5 (sodium/glucose cotransporter), member 9 protein-coding 0.000000 0.313433 72(GTTAGAATAACAATTG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3418 chr8 100943433 100943633 + -1.23954 NA Intergenic Intergenic 1526859 NR_132435 234624 Mm.124595 NM_175479 ENSMUSG00000052479 A330008L17Rik - RIKEN cDNA A330008L17 gene ncRNA 0.005000 0.303483 38(CATTTGTTTGGTAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-474 chr6 67283041 67283241 + -1.24046 NA intron (NM_001113565, intron 7 of 7) intron (NM_001113565, intron 7 of 7) 16162 NM_025814 66870 Mm.240490 NM_025814 ENSMUSG00000036371 Serbp1 1200009K13Rik|9330147J08Rik|AL022786|Pairbp1 serpine1 mRNA binding protein 1 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3420 chr8 101295561 101295761 + -1.24111 NA Intergenic Intergenic 1489450 NM_009866 12552 Mm.1571 NM_009866 ENSMUSG00000031673 Cdh11 Cad11|OSF-4 cadherin 11 protein-coding 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-410 chr10 49736326 49736526 + -1.24111 NA intron (NM_001358866, intron 2 of 16) ORR1F-int|LTR|ERVL-MaLR 51511 NM_001358866 14806 Mm.185993 NM_010349 ENSMUSG00000056073 Grik2 AW124492|C130030K03Rik|GluK2|Glur-6|Glur6|Glurbeta2 glutamate receptor, ionotropic, kainate 2 (beta 2) protein-coding 0.010000 0.358209 -88(CTTTTCTTTTCCAAAT,+,0.00),-37(ACATTATCATGTTCAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1549 chr16 89398546 89398746 + -1.24111 NA Intergenic L1MB1|LINE|L1 5128 NM_028621 170656 Mm.46109 NM_028621 ENSMUSG00000058368 Krtap21-1 1110017B05Rik|AI506979|KAP21.1|Krtap16-7 keratin associated protein 21-1 protein-coding 0.010000 0.363184 21(ATTTGCATTGTAATCA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1334 chr15 57187938 57188138 + -1.24111 NA Intergenic Intergenic 77123 NM_001357930 210463 Mm.26555 NM_172378 ENSMUSG00000022366 Slc22a22 oat-pg solute carrier family 22 (organic cation transporter), member 22 protein-coding 0.000000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3009 chr6 80145216 80145416 + -1.24111 NA intron (NM_001134743, intron 2 of 2) B4A|SINE|B4 125673 NM_001347261 243499 Mm.483425 NM_178731 ENSMUSG00000052581 Lrrtm4 7530419J18Rik|A230052N11 leucine rich repeat transmembrane neuronal 4 protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-444 chr10 69602737 69602937 + -1.24111 NA intron (NM_170730, intron 1 of 17) Lx8|LINE|L1 69129 NM_170728 11735 Mm.235960 NM_009670 ENSMUSG00000069601 Ank3 2900054D09Rik|AI314020|Ank-3|AnkG|Ankyrin-3|Ankyrin-G ankyrin 3, epithelial protein-coding 0.000000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-126 chr1 71876566 71876766 + -1.24111 NA Intergenic Intergenic -11446 NR_027658 667931 Mm.214128 NR_027658 ENSMUSG00000099707 Gm8883 EG667931|Gm554 predicted gene 8883 ncRNA 0.005000 0.393035 49(ATTGAATAAAGCATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1802 chr18 75829494 75829694 + -1.24121 NA intron (NM_145356, intron 1 of 4) intron (NM_145356, intron 1 of 4) 9416 NM_145356 207259 Mm.159332 NM_145356 ENSMUSG00000044646 Zbtb7c B230208J24Rik|Kr-pok|Zbtb36 zinc finger and BTB domain containing 7C protein-coding 0.020000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3251 chr7 136876554 136876754 + -1.24121 NA Intergenic Intergenic -17957 NM_008598 17314 Mm.440219 NM_008598 ENSMUSG00000054612 Mgmt AGT|AI267024|Agat O-6-methylguanine-DNA methyltransferase protein-coding 0.005000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-286 chr18 75829492 75829692 + -1.24121 NA intron (NM_145356, intron 1 of 4) intron (NM_145356, intron 1 of 4) 9414 NM_145356 207259 Mm.159332 NM_145356 ENSMUSG00000044646 Zbtb7c B230208J24Rik|Kr-pok|Zbtb36 zinc finger and BTB domain containing 7C protein-coding 0.020000 0.472637 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-553 chr9 23341323 23341523 + -1.24615 NA intron (NM_028472, intron 6 of 14) intron (NM_028472, intron 6 of 14) 118347 NM_028472 73230 Mm.335020 NM_028472 ENSMUSG00000031963 Bmper 3110056H04Rik|CV-2|Crim3|Cv2 BMP-binding endothelial regulator protein-coding 0.000000 0.388060 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-14 chr1 71398175 71398375 + -1.24618 NA intron (NM_175210, intron 2 of 52) intron (NM_175210, intron 2 of 52) 16635 NM_175210 74591 Mm.159251 NM_175210 ENSMUSG00000050296 Abca12 4832428G11Rik|4833417A11Rik ATP-binding cassette, sub-family A (ABC1), member 12 protein-coding 0.015000 0.407960 -4(TCTTTATTATGCAATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3333 chr8 44483792 44483992 + -1.24671 NA Intergenic Intergenic -466316 NM_001081286 14107 Mm.27365 NM_001081286 ENSMUSG00000070047 Fat1 2310038E12Rik|AU023433|Fath|mFat1 FAT atypical cadherin 1 protein-coding 0.000000 0.378109 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-503 chr7 91389537 91389737 + -1.24671 NA intron (NM_011807, intron 1 of 22) intron (NM_011807, intron 1 of 22) 298851 NM_011807 23859 Mm.147213 NM_011807 ENSMUSG00000052572 Dlg2 A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93 discs large MAGUK scaffold protein 2 protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2783 chr5 55313911 55314111 + -1.24671 NA Intergenic L1_Mus4|LINE|L1 964019 NR_038045 330086 Mm.254449 NM_177871 ENSMUSG00000105912 Gm10440 D130065D13 predicted gene 10440 ncRNA 0.000000 0.333333 -53(GAATTATTATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2850 chr5 97444469 97444669 + -1.24671 NA intron (NR_045981, intron 3 of 7) intron (NR_045981, intron 3 of 7) 12454 NM_010294 14626 Mm.61206 NM_010294 ENSMUSG00000050553 Gk2 GKTA|Gk-rs2 glycerol kinase 2 protein-coding 0.000000 0.273632 67(CATACAAAATGCATA,+,0.00),67(CATACAAAATGCATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3176 chr7 91389533 91389733 + -1.24671 NA intron (NM_011807, intron 1 of 22) intron (NM_011807, intron 1 of 22) 298847 NM_011807 23859 Mm.147213 NM_011807 ENSMUSG00000052572 Dlg2 A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93 discs large MAGUK scaffold protein 2 protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2364 chr3 101162727 101162927 + -1.24671 NA Intergenic Intergenic -52661 NM_011197 19221 Mm.24807 NM_011197 ENSMUSG00000027864 Ptgfrn 4833445A08Rik|AU042434|CD9P-1|EWI-F|FPRP|Trim45 prostaglandin F2 receptor negative regulator protein-coding 0.030000 0.462687 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-520 chr8 44483791 44483991 + -1.24671 NA Intergenic Intergenic -466317 NM_001081286 14107 Mm.27365 NM_001081286 ENSMUSG00000070047 Fat1 2310038E12Rik|AU023433|Fath|mFat1 FAT atypical cadherin 1 protein-coding 0.000000 0.373134 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-409 chr4 81077903 81078103 + -1.24671 NA Intergenic Intergenic 167317 NM_026821 52829 Mm.273986 NM_026821 ENSMUSG00000048706 Lurap1l 1110029A09Rik|AV077978|AV175137|D4Bwg0951e|WI-13707|bM350F23.1 leucine rich adaptor protein 1-like protein-coding 0.000000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2620 chr4 81077989 81078189 + -1.24671 NA Intergenic Intergenic 167403 NM_026821 52829 Mm.273986 NM_026821 ENSMUSG00000048706 Lurap1l 1110029A09Rik|AV077978|AV175137|D4Bwg0951e|WI-13707|bM350F23.1 leucine rich adaptor protein 1-like protein-coding 0.000000 0.343284 23(CTTTTAATGATAAAGA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-315 chr2 53803455 53803655 + -1.24671 NA Intergenic L1_Mur2|LINE|L1 281997 NM_023396 67874 Mm.27086 NM_023396 ENSMUSG00000075334 Rprm 2410012A13Rik|Reprimo reprimo, TP53 dependent G2 arrest mediator candidate protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2619 chr4 81077856 81078056 + -1.24671 NA Intergenic Intergenic 167270 NM_026821 52829 Mm.273986 NM_026821 ENSMUSG00000048706 Lurap1l 1110029A09Rik|AV077978|AV175137|D4Bwg0951e|WI-13707|bM350F23.1 leucine rich adaptor protein 1-like protein-coding 0.000000 0.308458 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-364 chr3 80506557 80506757 + -1.24671 NA Intergenic Intergenic 296178 NR_152148 14800 Mm.220224 NM_013540 ENSMUSG00000033981 Gria2 GluA2|GluR-B|Glur-2|Glur2|gluR-K2 glutamate receptor, ionotropic, AMPA2 (alpha 2) protein-coding 0.005000 0.273632 5(ATATTTTTATGCAAAA,+,0.00),11(TTATGCAAAACAATAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-99 chr1 62431632 62431832 + -1.24756 NA intron (NM_001081050, intron 18 of 22) intron (NM_001081050, intron 18 of 22) -271585 NM_001077405 18187 Mm.266341 NM_010939 ENSMUSG00000025969 Nrp2 1110048P06Rik|Np-2|Np2|Npn-2|Npn2 neuropilin 2 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2070 chr2 103445842 103446042 + -1.24756 NA intron (NM_001145813, intron 4 of 6) L2b|LINE|L2 21874 NM_010125 13711 Mm.20888 NM_010125 ENSMUSG00000027186 Elf5 ESE-2|ESE-5|ESE-5. E74-like factor 5 protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-413 chr10 52833974 52834174 + -1.24756 NA intron (NM_178675, intron 1 of 7) RLTR12B|LTR|ERVK 143573 NM_178675 215085 Mm.338690 NM_178675 ENSMUSG00000038602 Slc35f1 Duf6|E130016L02 solute carrier family 35, member F1 protein-coding 0.000000 0.358209 29(ATAAGCATTACAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3618 chr9 95494584 95494784 + -1.24756 NA intron (NM_001357974, intron 4 of 27) PB1D11|SINE|Alu 17312 NM_001357974 67958 Mm.292742 NM_026476 ENSMUSG00000032407 U2surp 2610101N10Rik|AU023006|Sr140 U2 snRNP-associated SURP domain containing protein-coding 0.010000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1387 chr15 93508642 93508842 + -1.24756 NA exon (NM_001033217, exon 5 of 8) exon (NM_001033217, exon 5 of 8) 10778 NM_001364846 106042 Mm.150314 NM_001033217 ENSMUSG00000036158 Prickle1 1110058P22Rik|AW215793|Prickle|b2b019Clo|mpk1 prickle planar cell polarity protein 1 protein-coding 0.035000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1695 chr18 20120454 20120654 + -1.24756 NA Intergenic Intergenic -5781 NM_013504 13505 Mm.33740 NM_013504 ENSMUSG00000044322 Dsc1 1110020A10Rik|AI507491 desmocollin 1 protein-coding 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-478 chr10 91344457 91344657 + -1.24756 NA Intergenic Lx5|LINE|L1 -123938 NR_151510 102633753 Mm.416936 NR_151510 4930534H03Rik - RIKEN cDNA 4930534H03 gene ncRNA 0.000000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3252 chr7 137061250 137061450 + -1.24756 NA intron (NM_008598, intron 2 of 4) intron (NM_008598, intron 2 of 4) 166739 NM_008598 17314 Mm.440219 NM_008598 ENSMUSG00000054612 Mgmt AGT|AI267024|Agat O-6-methylguanine-DNA methyltransferase protein-coding 0.015000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1080 chr14 21421827 21422027 + -1.24756 NA intron (NM_134079, intron 9 of 10) intron (NM_134079, intron 9 of 10) -77843 NM_001205241 54169 Mm.248967 NM_017479 ENSMUSG00000021767 Kat6b AI507552|B130044K16Rik|MYST-4|Morf|Myst4|mKIAA0383|qkf|querkopf K(lysine) acetyltransferase 6B protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3617 chr9 94995911 94996111 + -1.24756 NA intron (NM_177909, intron 9 of 15) Lx7|LINE|L1 244182 NR_106116 102465763 NR_106116 ENSMUSG00000098251 Mir7656 Gm27614|mmu-mir-7656 microRNA 7656 ncRNA 0.005000 0.402985 19(GTTTGAAAGAAAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-56 chr1 37146079 37146279 + -1.24756 NA intron (NM_001370828, intron 19 of 27) ORR1D2|LTR|ERVL-MaLR -72099 NM_001282010 12790 Mm.214224 NM_009918 ENSMUSG00000026114 Cnga3 CNG3 cyclic nucleotide gated channel alpha 3 protein-coding 0.015000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-799 chr12 56019174 56019374 + -1.24756 NA Intergenic Intergenic 182908 NR_155205 52592 Mm.24761 NM_027867 ENSMUSG00000012076 Brms1l 0710008O11Rik|AI159718|BRMS1|D12Ertd407e breast cancer metastasis-suppressor 1-like protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1611 chr17 51123991 51124191 + -1.24756 NA intron (NM_028162, intron 2 of 21) intron (NM_028162, intron 2 of 21) 35287 NM_001285993 72238 Mm.120650 NM_028162 ENSMUSG00000023923 Tbc1d5 1600014N05Rik TBC1 domain family, member 5 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1324 chr15 53944576 53944776 + -1.24756 NA Intergenic Lx7|LINE|L1 -42240 NM_177225 320679 Mm.442455 NM_177225 ENSMUSG00000058656 Samd12 A830094I09Rik sterile alpha motif domain containing 12 protein-coding 0.000000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1219 chr14 117681430 117681630 + -1.24756 NA intron (NM_001079844, intron 4 of 9) intron (NM_001079844, intron 4 of 9) 272317 NR_105747 102465148 NR_105747 ENSMUSG00000098648 Mir6239 Gm28025|mmu-mir-6239 microRNA 6239 ncRNA 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1883 chr19 36589238 36589438 + -1.24756 NA intron (NM_001163471, intron 6 of 20) Lx6|LINE|L1 34699 NM_001163471 226098 Mm.61107 NM_172637 ENSMUSG00000041180 Hectd2 4921524L07|A630025O09Rik|AW212605 HECT domain E3 ubiquitin protein ligase 2 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1447 chr16 35501248 35501448 + -1.24756 NA Intergenic Intergenic 8071 NR_040481 69768 Mm.396136 NR_040481 ENSMUSG00000099429 1600019K03Rik - RIKEN cDNA 1600019K03 gene ncRNA 0.005000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-635 chr11 62831979 62832179 + -1.24756 NA intron (NM_053169, intron 2 of 5) intron (NM_053169, intron 2 of 5) 11826 NM_053169 94092 Mm.117087 NM_053169 ENSMUSG00000047821 Trim16 9130006M08Rik|AI482483|EBBP tripartite motif-containing 16 protein-coding 0.000000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-314 chr1 188790502 188790702 + -1.24756 NA intron (NM_021408, intron 48 of 70) L1MB2|LINE|L1 217238 NM_001359576 226823 Mm.209880 NM_172650 ENSMUSG00000026608 Kctd3 4930438A20Rik|9330185B06|E330032J19Rik|NY-REN-45 potassium channel tetramerisation domain containing 3 protein-coding 0.010000 0.422886 -40(TCATTCTCTTCTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3032 chr6 99684836 99685036 + -1.24756 NA Intergenic Intergenic -7431 NM_008158 14761 Mm.394313 NM_008158 ENSMUSG00000072875 Gpr27 - G protein-coupled receptor 27 protein-coding 0.010000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2427 chr3 124933907 124934107 + -1.24756 NA Intergenic Intergenic -352916 NM_001368235 384775 Mm.489851 NM_001368235 ENSMUSG00000039174 1700003H04Rik 4930538K10Rik|4933400D22Rik RIKEN cDNA 1700003H04 gene protein-coding 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3527 chr9 44198051 44198251 + -1.24756 NA intron (NM_007619, intron 2 of 15) B3|SINE|B2 35895 NM_007619 12402 Mm.266871 NM_007619 ENSMUSG00000034342 Cbl 4732447J05Rik|Cbl-2|c-Cbl|cbl Casitas B-lineage lymphoma protein-coding 0.010000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-518 chr10 112614189 112614389 + -1.24771 NA Intergenic Intergenic -112637 NR_040579 69355 Mm.84337 NR_040579 ENSMUSG00000100314 1700010J16Rik - RIKEN cDNA 1700010J16 gene ncRNA 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2299 chr3 67163915 67164115 + -1.24830 NA intron (NM_001356273, intron 4 of 9) intron (NM_001356273, intron 4 of 9) 178048 NM_001356273 66880 Mm.316418 NM_025822 ENSMUSG00000034544 Rsrc1 1200013F24Rik|SRrp53 arginine/serine-rich coiled-coil 1 protein-coding 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2973 chr6 48087331 48087531 + -1.24830 NA promoter-TSS (NM_001347142) promoter-TSS (NM_001347142) -838 NM_001347142 69228 Mm.207555 NM_001163475 ENSMUSG00000057691 Zfp746 2810407L07Rik|AI317225|Znf746 zinc finger protein 746 protein-coding 0.010000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-663 chr11 80511477 80511677 + -1.24830 NA intron (NM_177390, intron 21 of 21) intron (NM_177390, intron 21 of 21) -2471 NR_126552 77417 Mm.437510 NR_126552 ENSMUSG00000085078 C030013C21Rik - RIKEN cDNA C030013C21 gene ncRNA 0.025000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3295 chr8 23996007 23996207 + -1.24830 NA intron (NM_177086, intron 5 of 6) intron (NM_177086, intron 5 of 6) 326446 NM_177086 320158 Mm.121274 NM_177086 ENSMUSG00000037492 Zmat4 9630048M01Rik zinc finger, matrin type 4 protein-coding 0.020000 0.368159 -2(ATTTTCAAAACCATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2015 chr2 56560951 56561151 + -1.24830 NA Intergenic Intergenic -224760 NR_105751 102465169 NR_105751 ENSMUSG00000098437 Mir195b Gm27491|mmu-mir-195b microRNA 195b ncRNA 0.005000 0.298507 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-138 chr1 79575882 79576082 + -1.24830 NA Intergenic Intergenic 95990 NM_183027 252903 Mm.32409 NM_183027 ENSMUSG00000054702 Ap1s3 1190009B22|Jr2|[s]3A adaptor-related protein complex AP-1, sigma 3 protein-coding 0.010000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-17 chr1 14058443 14058643 + -1.24830 NA Intergenic Intergenic 251656 NM_010164 14048 Mm.250185 NM_010164 ENSMUSG00000025932 Eya1 bor EYA transcriptional coactivator and phosphatase 1 protein-coding 0.005000 0.402985 76(CAATTGTTATTCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2523 chr4 17095263 17095463 + -1.24830 NA Intergenic Intergenic -757530 NR_135158 17389 Mm.187315 NM_019724 ENSMUSG00000028226 Mmp16 MT-MMP 3|MT3-MMP|Mt3mmp matrix metallopeptidase 16 protein-coding 0.000000 0.338308 -18(CATGCATTAGGCATG,+,0.00),-18(CATGCATTAGGCATG,-,0.00) -2(TGTCTGTTGTGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3259 chr7 142105273 142105473 + -1.24830 NA Intergenic Lx9|LINE|L1 -10089 NM_008748 18218 Mm.39725 NM_008748 ENSMUSG00000037887 Dusp8 5530400B01Rik|AI593498|Nttp1 dual specificity phosphatase 8 protein-coding 0.005000 0.338308 -64(TATGTATATTTATA,+,0.00),-52(TATGCCTATGTATA,+,0.00),-52(TATGCCTATGTATA,-,0.00),-46(TATGTATATGTATA,+,0.00) -100(TTATTCTCTTTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1622 chr17 60698862 60699062 + -1.24830 NA Intergenic Lx|LINE|L1 -1685640 NM_001368393 67993 Mm.36507 NM_026497 ENSMUSG00000024228 Nudt12 0610016O18Rik nudix (nucleoside diphosphate linked moiety X)-type motif 12 protein-coding 0.005000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-346 chr2 178728717 178728917 + -1.24830 NA Intergenic Intergenic 298302 NM_001291189 381409 Mm.330860 NM_198656 ENSMUSG00000039155 Cdh26 Gm1010 cadherin-like 26 protein-coding 0.030000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2743 chr5 21481564 21481764 + -1.25129 NA 3' UTR (NM_177869, exon 8 of 8) 3' UTR (NM_177869, exon 8 of 8) 56761 NM_177869 330050 Mm.40655 NM_177869 ENSMUSG00000047221 Fam185a 4631428I10|AI847670 family with sequence similarity 185, member A protein-coding 0.010000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1173 chr14 86699920 86700120 + -1.25129 NA intron (NM_019670, intron 27 of 27) intron (NM_019670, intron 27 of 27) 441204 NM_019670 56419 Mm.440585 NM_019670 ENSMUSG00000022021 Diaph3 4930417P13Rik|Dia2|Diap3|Drf3|p134MDia2 diaphanous related formin 3 protein-coding 0.000000 0.308458 56(CAATTTTTATGTAGAT,+,0.00),81(ATATACATGAAAAAAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1718 chr18 31493990 31494190 + -1.25129 NA Intergenic L1_Mur2|LINE|L1 -46675 NM_009308 20983 Mm.233846 NM_009308 ENSMUSG00000024261 Syt4 SytIV synaptotagmin IV protein-coding 0.000000 0.298507 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-852 chr12 96594301 96594501 + -1.25129 NA Intergenic Intergenic -547179 NR_103800 69423 Mm.46121 NM_027076 1700019M22Rik - NFX-like protein pseudo 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-979 chr13 73892909 73893109 + -1.25129 NA Intergenic L1M5|LINE|L1 44758 NM_027182 69716 Mm.275095 NM_027182 ENSMUSG00000021569 Trip13 2410002G23Rik|D13Ertd328e thyroid hormone receptor interactor 13 protein-coding 0.005000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-243 chr16 88540225 88540425 + -1.25129 NA Intergenic Intergenic 22858 NM_018778 54420 Mm.25836 NM_018778 ENSMUSG00000050520 Cldn8 AI648025 claudin 8 protein-coding 0.010000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2797 chr5 66032108 66032308 + -1.25149 NA intron (NM_178446, intron 3 of 6) intron (NM_178446, intron 3 of 6) -27923 NR_027961 231253 Mm.436542 NM_177679 ENSMUSG00000054598 9130230L23Rik - RIKEN cDNA 9130230L23 gene ncRNA 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2165 chr2 148524752 148524952 + -1.25213 NA Intergenic Intergenic -81317 NM_010740 17064 Mm.681 NM_010740 ENSMUSG00000027435 Cd93 6030404G09Rik|AA145088|AA4.1|AW555904|C1qr1|C1qrp|Ly68 CD93 antigen protein-coding 0.000000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1188 chr14 96684200 96684400 + -1.25213 NA Intergenic RMER15|LTR|ERVL -165266 NM_053105 93688 Mm.308735 NM_053105 ENSMUSG00000022076 Klhl1 mKIAA1490 kelch-like 1 protein-coding 0.010000 0.368159 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-54 chr10 37108615 37108815 + -1.25213 NA Intergenic Intergenic 30211 NM_008538 17118 Mm.30059 NM_008538 ENSMUSG00000069662 Marcks Macs|PKCSL myristoylated alanine rich protein kinase C substrate protein-coding 0.000000 0.298507 -92(TCATTGTCATGTTGAT,+,0.00),-77(TGATTGTGATGCAAAC,+,0.00),-27(CATTTTCTATGGAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-504 chr7 92040970 92041170 + -1.25213 NA intron (NM_011807, intron 11 of 22) intron (NM_011807, intron 11 of 22) -21324 NM_001243046 23859 Mm.147213 NM_011807 ENSMUSG00000052572 Dlg2 A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93 discs large MAGUK scaffold protein 2 protein-coding 0.000000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3016 chr6 87294953 87295153 + -1.25294 NA intron (NM_054041, intron 3 of 17) intron (NM_054041, intron 3 of 17) 40722 NM_054041 69538 Mm.232525 NM_054041 ENSMUSG00000033420 Antxr1 2310008J16Rik|2810405N18Rik|Antrx1|Tem8 anthrax toxin receptor 1 protein-coding 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2751 chr5 29665826 29666026 + -1.25294 NA intron (NM_133907, intron 21 of 22) intron (NM_133907, intron 21 of 22) -69972 NR_152863 23950 Mm.290110 NM_011847 ENSMUSG00000029131 Dnajb6 HSJ-2|Mrj|mDj4 DnaJ heat shock protein family (Hsp40) member B6 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3195 chr7 106246482 106246682 + -1.25294 NA Intergenic Intergenic -31242 NM_001039160 74558 Mm.458429 NM_029000 ENSMUSG00000045868 Gvin1 9130002C22Rik|9830104F22Rik|Iigs1|VLIG|VLIG-1 GTPase, very large interferon inducible 1 protein-coding 0.000000 0.288557 -73(AATCCATATGAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3689 chrX 41677079 41677279 + -1.25294 NA non-coding (NR_104053, exon 17 of 17) non-coding (NR_104053, exon 17 of 17) 234722 NM_001033422 331401 Mm.259498 NM_001033422 ENSMUSG00000037475 Thoc2 6330441O12Rik|D130005M13Rik|Gm1139|Gm1793|Tho2 THO complex 2 protein-coding 0.020000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2558 chr4 39380239 39380439 + -1.25294 NA Intergenic Intergenic -69954 NM_001081095 75471 Mm.23522 NM_001081095 ENSMUSG00000028287 1700009N14Rik AI429145 RIKEN cDNA 1700009N14 gene protein-coding 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1704 chr18 25600693 25600893 + -1.25294 NA intron (NM_001362325, intron 2 of 12) intron (NM_001362325, intron 2 of 12) 78955 NM_001362337 108013 Mm.266435 NM_133195 ENSMUSG00000024268 Celf4 A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik CUGBP, Elav-like family member 4 protein-coding 0.025000 0.572139 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2027 chr2 62562930 62563130 + -1.25294 NA intron (NM_007986, intron 2 of 25) intron (NM_007986, intron 2 of 25) 10991 NM_007986 14089 Mm.41816 NM_007986 ENSMUSG00000000392 Fap SIMP fibroblast activation protein protein-coding 0.000000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1240 chr15 6464477 6464677 + -1.25294 NA intron (NM_001368420, intron 4 of 9) Charlie2b|DNA|hAT-Charlie 19231 NM_013485 12279 Mm.29095 NM_013485 ENSMUSG00000022149 C9 - complement component 9 protein-coding 0.015000 0.358209 -59(ATTACTATAACAAAAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-684 chr11 95422979 95423179 + -1.25294 NA intron (NM_001359107, intron 1 of 9) B3|SINE|B2 8996 NM_025287 20747 Mm.285454 NM_025287 ENSMUSG00000057522 Spop AI315626|Pcif1|TEF2 speckle-type BTB/POZ protein protein-coding 0.020000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-292 chr1 176408255 176408455 + -1.25294 NA Intergenic Intergenic 118914 NR_151528 102640488 Mm.415515 NR_151528 ENSMUSG00000104021 Gm36536 - predicted gene, 36536 ncRNA 0.015000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-595 chr11 36847176 36847376 + -1.25294 NA intron (NM_011856, intron 2 of 28) intron (NM_011856, intron 2 of 28) 96965 NM_001290702 23964 Mm.439889 NM_011856 ENSMUSG00000049336 Tenm2 Odz2|Odz3|Ten-2|Ten-m2 teneurin transmembrane protein 2 protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2371 chr3 103849133 103849333 + -1.25294 NA intron (NM_001142960, intron 3 of 3) RLTR22_Mus|LTR|ERVK -10562 NR_104070 19260 Mm.395 NM_008979 ENSMUSG00000027843 Ptpn22 70zpep|PEP|Ptpn8 protein tyrosine phosphatase, non-receptor type 22 (lymphoid) protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2926 chr6 13245905 13246105 + -1.25294 NA Intergenic MTE-int|LTR|ERVL-MaLR -21040 NM_001368871 232585 Mm.389082 NM_001013757 ENSMUSG00000079679 Vwde Gm467 von Willebrand factor D and EGF domains protein-coding 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3768 chrX 160887880 160888080 + -1.25294 NA intron (NM_001024624, intron 3 of 18) MTB_Mm-int|LTR|ERVL-MaLR 19072 NM_001001496 414089 Mm.123113 NM_001001496 ENSMUSG00000055691 Gja6 A530015O12Rik|Cnx33|Cx33|Gja-6 gap junction protein, alpha 6 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-878 chr13 3789804 3790004 + -1.25294 NA Intergenic Intergenic 14414 NM_027416 70405 Mm.20079 NM_027416 ENSMUSG00000063130 Calml3 2310068O22Rik|AI326174 calmodulin-like 3 protein-coding 0.005000 0.358209 -74(ATTAACATGGTAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1063 chr14 12178840 12179040 + -1.25294 NA intron (NM_008981, intron 13 of 29) intron (NM_008981, intron 13 of 29) -11003 NM_001347593 19270 Mm.431266 NM_008981 ENSMUSG00000021745 Ptprg 5430405N12Rik|AW046354|AW549872|RPTPgamma protein tyrosine phosphatase, receptor type, G protein-coding 0.000000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-369 chr10 24581143 24581343 + -1.25294 NA intron (NR_163910, intron 2 of 4) intron (NR_163910, intron 2 of 4) -14199 NM_010217 14219 Mm.390287 NM_010217 ENSMUSG00000019997 Ccn2 Ctgf|Fisp12|Hcs24|fisp-12 cellular communication network factor 2 protein-coding 0.015000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1737 chr18 39564841 39565041 + -1.25294 NA Intergenic Intergenic -45520 NM_001361212 14815 Mm.129481 NM_008173 ENSMUSG00000024431 Nr3c1 GR|Grl-1|Grl1 nuclear receptor subfamily 3, group C, member 1 protein-coding 0.005000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3493 chr9 21085155 21085355 + -1.25294 NA intron (NM_027911, intron 3 of 12) intron (NM_027911, intron 3 of 12) 6744 NM_027911 71766 Mm.196137 NM_027911 ENSMUSG00000010205 Raver1 1300006N24Rik|AA050359 ribonucleoprotein, PTB-binding 1 protein-coding 0.005000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-968 chr13 57721426 57721626 + -1.25294 NA intron (NM_001166466, intron 2 of 11) RMER15|LTR|ERVL 186806 NM_001166463 20745 Mm.379020 NM_009262 ENSMUSG00000056222 Spock1 Spock|Ticn1|testican sparc/osteonectin, cwcv and kazal-like domains proteoglycan 1 protein-coding 0.025000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1261 chr15 17195346 17195546 + -1.25294 NA Intergenic ID_B1|SINE|B4 466531 NM_009869 12565 Mm.439758 NM_009869 ENSMUSG00000025370 Cdh9 - cadherin 9 protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-447 chr10 70814463 70814663 + -1.25294 NA Intergenic Intergenic -158600 NR_045292 319646 Mm.483039 NR_045291 ENSMUSG00000037747 D630013N20Rik - RIKEN cDNA D630013N20 gene ncRNA 0.020000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3181 chr7 93507858 93508058 + -1.25294 NA Intergenic Intergenic -323782 NM_001358087 100040298 Mm.260904 NM_001358087 Gm15501 EyeLinc5 predicted pseudogene 15501 protein-coding 0.000000 0.303483 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1501 chr16 65964311 65964511 + -1.25294 NA Intergenic Intergenic 149222 NM_001368760 73569 Mm.25670 NM_028572 ENSMUSG00000091243 Vgll3 1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2 vestigial like family member 3 protein-coding 0.000000 0.482587 -8(CTGTTGTCATGCAGAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3230 chr7 129516949 129517149 + -1.25294 NA Intergenic Intergenic -74814 NM_172255 207425 Mm.229323 NM_172255 ENSMUSG00000042055 Wdr11 2900055P10Rik|AW489876|Brwd2|mKIAA1351 WD repeat domain 11 protein-coding 0.015000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1340 chr15 60853695 60853895 + -1.25294 NA Intergenic Intergenic -28715 NM_001162926 399603 Mm.411968 NM_207269 ENSMUSG00000072568 Lratd2 BF642811|D330050I23Rik|Fam84b LRAT domain containing 1 protein-coding 0.020000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1693 chr18 18485126 18485326 + -1.25294 NA Intergenic MTEa|LTR|ERVL-MaLR -904236 NR_045374 75162 Mm.60874 NR_045374 ENSMUSG00000117615 4930545E07Rik - RIKEN cDNA 4930545E07 gene ncRNA 0.015000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2587 chr4 57695830 57696030 + -1.25294 NA intron (NM_001304544, intron 5 of 8) intron (NM_001304544, intron 5 of 8) 127682 NM_001304544 677884 Mm.331630 NM_001304544 ENSMUSG00000089945 Pakap AF064781|AKAP-2|AKAP-KL|Akap2|Gm20459|PRKA2|Palm2-Akap2|Palm2Akap2|Palm2akap2 paralemmin A kinase anchor protein protein-coding 0.000000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2990 chr6 67283062 67283262 + -1.25473 NA intron (NM_001113565, intron 7 of 7) intron (NM_001113565, intron 7 of 7) 16183 NM_025814 66870 Mm.240490 NM_025814 ENSMUSG00000036371 Serbp1 1200009K13Rik|9330147J08Rik|AL022786|Pairbp1 serpine1 mRNA binding protein 1 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-172 chr1 102848379 102848579 + -1.25515 NA Intergenic Intergenic 1692711 NR_037989 100504525 Mm.87065 NR_037989 ENSMUSG00000100684 Gm20268 - predicted gene, 20268 ncRNA 0.015000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3098 chr7 24196234 24196434 + -1.25515 NA 3' UTR (NM_001310670, exon 2 of 2) 3' UTR (NM_001310670, exon 2 of 2) 7249 NM_001310670 56707 Mm.448367 NM_019940 ENSMUSG00000087598 Zfp111 - zinc finger protein 111 protein-coding 0.005000 0.343284 -18(CCTTTGTATAGCAAAT,+,0.00),15(TTACTGTCTTTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-641 chr11 63782532 63782732 + -1.25515 NA Intergenic Intergenic 139652 NM_018805 54710 Mm.274426 NM_018805 ENSMUSG00000070407 Hs3st3b1 3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 protein-coding 0.040000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-460 chr10 80649050 80649250 + -1.25515 NA intron (NM_145361, intron 1 of 8) intron (NM_145361, intron 1 of 8) 7921 NM_145361 208198 Mm.60720 NM_145361 ENSMUSG00000003344 Btbd2 2610037C03Rik|4930512K17Rik BTB (POZ) domain containing 2 protein-coding 0.015000 0.587065 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-759 chr12 32724553 32724753 + -1.25515 NA Intergenic Intergenic -95682 NM_021524 59027 Mm.202727 NM_021524 ENSMUSG00000020572 Nampt 1110035O14Rik|AI314458|AI480535|NAmPRTase|Pbef|Pbef1|Visfatin nicotinamide phosphoribosyltransferase protein-coding 0.020000 0.442786 -29(CGTGAATATTCATT,+,0.00),-29(CGTGAATATTCATT,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-99 chr11 63782477 63782677 + -1.25515 NA Intergenic Intergenic 139707 NM_018805 54710 Mm.274426 NM_018805 ENSMUSG00000070407 Hs3st3b1 3-OST-3B|3OST3B1|3Ost3b|AU041882|AW536289|Hs3st3b|m3-OST-3B heparan sulfate (glucosamine) 3-O-sulfotransferase 3B1 protein-coding 0.030000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2011 chr2 53605934 53606134 + -1.25699 NA Intergenic Intergenic 413950 NM_022989 65103 Mm.37623 NM_022989 ENSMUSG00000026960 Arl6ip6 2310057C01Rik|2610529A11Rik|Aip-6 ADP-ribosylation factor-like 6 interacting protein 6 protein-coding 0.000000 0.363184 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-148 chr13 85750252 85750452 + -1.25910 NA Intergenic Intergenic 296443 NM_007749 12867 Mm.378898 NM_007749 ENSMUSG00000017778 Cox7c COXVIIc|Cox7c1 cytochrome c oxidase subunit 7C protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-996 chr13 85750221 85750421 + -1.25910 NA Intergenic Intergenic 296474 NM_007749 12867 Mm.378898 NM_007749 ENSMUSG00000017778 Cox7c COXVIIc|Cox7c1 cytochrome c oxidase subunit 7C protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2324 chr3 78846414 78846614 + -1.25933 NA Intergenic Intergenic 299232 NM_001310536 76089 Mm.31220 NM_001099624 ENSMUSG00000062232 Rapgef2 5830453M24Rik|CNRasGEF|Pdzgef1|RA-GEF-1|mKIAA0313|nRapGEP Rap guanine nucleotide exchange factor (GEF) 2 protein-coding 0.000000 0.318408 15(TTTTACAAAACAAATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-219 chr1 126461954 126462154 + -1.25933 NA intron (NM_001081756, intron 3 of 16) intron (NM_001081756, intron 3 of 16) 30873 NM_172484 210356 Mm.377234 NM_172484 ENSMUSG00000049690 Nckap5 8430408F21|D130011D22Rik|E030049G20Rik|Erih1|Erih2|Gm1548|Nap5 NCK-associated protein 5 protein-coding 0.010000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1789 chr18 66783591 66783791 + -1.26283 NA Intergenic Intergenic 76796 NM_016977 17202 Mm.229447 NM_016977 ENSMUSG00000047259 Mc4r Mc4-r|Pkcp melanocortin 4 receptor protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1705 chr18 26209754 26209954 + -1.26283 NA Intergenic Intergenic -455697 NM_001362308 108013 Mm.266435 NM_133195 ENSMUSG00000024268 Celf4 A230070D14Rik|BRUNOL-4|Brul4|Brunol4|C130060B05Rik CUGBP, Elav-like family member 4 protein-coding 0.010000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3357 chr8 60492093 60492293 + -1.26283 NA Intergenic Intergenic -13931 NM_011834 23923 Mm.35020 NM_011834 ENSMUSG00000057228 Aadat AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2 aminoadipate aminotransferase protein-coding 0.010000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3488 chr9 16245692 16245892 + -1.26283 NA intron (NM_001080814, intron 3 of 25) intron (NM_001080814, intron 3 of 25) 256262 NM_001080814 270120 Mm.195010 NM_001080814 ENSMUSG00000074505 Fat3 9430076A06Rik|D430038H04Rik|Gm1132|Gm510|MFAT3F FAT atypical cadherin 3 protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3347 chr8 54427623 54427823 + -1.26283 NA Intergenic Lx9|LINE|L1 102275 NM_029701 76687 Mm.86437 NM_029701 ENSMUSG00000054408 Spcs3 1810011E08Rik|SPC22/23 signal peptidase complex subunit 3 homolog (S. cerevisiae) protein-coding 0.010000 0.353234 -74(TCATTGTCTTTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2698 chr4 135517064 135517264 + -1.26283 NA intron (NM_030189, intron 4 of 8) B3|SINE|B2 21177 NM_030189 78806 Mm.374844 NM_030189 ENSMUSG00000028801 Stpg1 4930403G18Rik|4930555I21Rik|Mapo2 sperm tail PG rich repeat containing 1 protein-coding 0.010000 0.552239 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1595 chr17 34204466 34204666 + -1.26283 NA promoter-TSS (NM_011530) promoter-TSS (NM_011530) 87 NM_011530 21355 Mm.14814 NM_011530 ENSMUSG00000024339 Tap2 ABC18|AI462429|APT2|Abcb3|Ham-2|Ham2|MTP2|PSF2|RING11|Tap-2|Y1|jas transporter 2, ATP-binding cassette, sub-family B (MDR/TAP) protein-coding 0.095000 0.636816 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-228 chr1 131688640 131688840 + -1.26283 NA promoter-TSS (NM_001311096) promoter-TSS (NM_001311096) 45 NM_145509 226421 Mm.44508 NM_145509 ENSMUSG00000052688 Rab7b 5430435G22Rik RAB7B, member RAS oncogene family protein-coding 0.015000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2495 chr3 153276014 153276214 + -1.26283 NA intron (NM_011372, intron 3 of 4) intron (NM_011372, intron 3 of 4) 22535 NR_126464 75489 Mm.443252 NR_126464 ENSMUSG00000105023 1700012D16Rik - RIKEN cDNA 1700012D16 gene ncRNA 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1969 chr2 27096926 27097126 + -1.26283 NA intron (NM_029981, intron 11 of 18) intron (NM_029981, intron 11 of 18) 17647 NM_029981 77794 Mm.330088 NM_029981 ENSMUSG00000036040 Adamtsl2 A930008K15Rik|tcp-1 ADAMTS-like 2 protein-coding 0.005000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2180 chr2 160815425 160815625 + -1.26283 NA intron (NM_177263, intron 2 of 3) RMER6C|LTR|ERVK 57465 NM_177263 320799 Mm.436734 NM_177263 ENSMUSG00000035877 Zhx3 1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395 zinc fingers and homeoboxes 3 protein-coding 0.020000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-872 chr12 118255284 118255484 + -1.26283 NA intron (NM_009239, intron 4 of 5) L1MB7|LINE|L1 46056 NM_009239 20688 Mm.34699 NM_009239 ENSMUSG00000025323 Sp4 5730497N03Rik|HF-1b|HF1-b trans-acting transcription factor 4 protein-coding 0.000000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3711 chrX 71488118 71488318 + -1.26283 NA intron (NM_138309, intron 1 of 8) L1MB7|LINE|L1 4631 NM_001199349 171486 Mm.283879 NM_138309 ENSMUSG00000035776 Cd99l2 AW548191|Mic2l1|Xap89 CD99 antigen-like 2 protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1686 chr18 13324230 13324430 + -1.26316 NA Intergenic ORR1C1|LTR|ERVL-MaLR 317340 NM_153087 225192 Mm.207073 NM_153087 ENSMUSG00000037346 Hrh4 AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R histamine receptor H4 protein-coding 0.010000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3041 chr6 103718464 103718664 + -1.26316 NA intron (NM_007697, intron 26 of 26) intron (NM_007697, intron 26 of 26) 207688 NM_007697 12661 Mm.251288 NM_007697 ENSMUSG00000030077 Chl1 A530023M13Rik|AI465420|CALL|LICAM2 cell adhesion molecule L1-like protein-coding 0.005000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-803 chr12 59496290 59496490 + -1.26316 NA Intergenic Intergenic -276907 NM_001033156 70611 Mm.311026 NM_001033156 ENSMUSG00000035329 Fbxo33 5730501N20Rik|AI642135 F-box protein 33 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-196 chr1 111698553 111698753 + -1.26316 NA Intergenic Intergenic 166265 NM_001081316 319901 Mm.103468 NM_001081316 ENSMUSG00000038702 Dsel 9330132E09Rik|DS-epi2 dermatan sulfate epimerase-like protein-coding 0.000000 0.313433 48(TGTGAATATGTATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2585 chr4 55109157 55109357 + -1.26316 NA Intergenic URR1A|DNA|hAT-Charlie 161312 NM_172867 242466 Mm.102904 NM_172867 ENSMUSG00000060206 Zfp462 6030417H05|9430078C22Rik|Gt4-2|Zfpip|Znf462 zinc finger protein 462 protein-coding 0.005000 0.348259 -81(CTTTGGGTATGCAAAT,+,0.00),-46(ATTTACATTGCAATTC,-,0.00),-3(ATTAGCAACAAAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3305 chr8 30587430 30587630 + -1.26316 NA Intergenic Intergenic 19135 NR_045856 71314 Mm.158666 NR_045856 ENSMUSG00000097044 4933433F19Rik - RIKEN cDNA 4933433F19 gene ncRNA 0.020000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-753 chr12 29805630 29805830 + -1.26316 NA intron (NM_001361657, intron 8 of 24) intron (NM_001361657, intron 8 of 24) -119285 NR_046080 328075 Mm.447832 NR_046080 ENSMUSG00000112663 C630031E19Rik C630031E19 RIKEN cDNA C630031E19 gene ncRNA 0.015000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1117 chr14 56489015 56489215 + -1.26316 NA intron (NM_001033043, intron 25 of 36) intron (NM_001033043, intron 25 of 36) 82731 NM_001014996 219103 Mm.212525 NM_001014996 ENSMUSG00000064128 Cenpj 4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4 centromere protein J protein-coding 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-917 chr13 20734480 20734680 + -1.26316 NA Intergenic Intergenic -59533 NM_001281854 27052 Mm.314046 NM_012054 ENSMUSG00000021322 Aoah 4930433E13Rik acyloxyacyl hydrolase protein-coding 0.005000 0.412935 74(GCATTATATTGTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3698 chrX 52683032 52683232 + -1.26316 NA Intergenic L1MB4|LINE|L1 58635 NR_029853 723852 NR_029853 ENSMUSG00000070106 Mir363 Mirn363|mir-363|mmu-mir-363 microRNA 363 ncRNA 0.000000 0.263682 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1839 chr19 14197969 14198169 + -1.26316 NA Intergenic RLTR30B_MM|LTR|ERV1 237881 NR_152176 667433 Mm.128913 NR_152176 Gm8630 EG667433 predicted gene 8630 ncRNA 0.010000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1096 chr14 31503347 31503547 + -1.26316 NA intron (NM_028932, intron 4 of 5) intron (NM_028932, intron 4 of 5) 8368 NM_028932 74427 Mm.491208 NM_028932 ENSMUSG00000021890 Eaf1 4933403C17Rik|AI666536 ELL associated factor 1 protein-coding 0.035000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2063 chr2 97156918 97157118 + -1.26316 NA intron (NM_001363047, intron 4 of 8) intron (NM_001363047, intron 4 of 8) -310639 NM_001289744 241568 Mm.241682 NM_178725 ENSMUSG00000050587 Lrrc4c 6430556C10Rik|NGL-1 leucine rich repeat containing 4C protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2694 chr4 128843155 128843355 + -1.26355 NA Intergenic Intergenic -37143 NM_001081098 230761 Mm.22616 NM_001081098 ENSMUSG00000028799 Zfp362 - zinc finger protein 362 protein-coding 0.010000 0.437811 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-453 chr5 146445494 146445694 + -1.26355 NA intron (NM_145155, intron 3 of 9) intron (NM_145155, intron 3 of 9) -36349 NM_001243104 623198 Mm.489582 NM_001243104 ENSMUSG00000096344 Gm6408 - predicted gene 6408 protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2164 chr2 148142026 148142226 + -1.26416 NA Intergenic Intergenic -95157 NM_010446 15376 Mm.938 NM_010446 ENSMUSG00000037025 Foxa2 HNF3-beta|HNF3beta|Hnf-3b|Hnf3b|Tcf-3b|Tcf3b forkhead box A2 protein-coding 0.010000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3773 chrX 168454386 168454586 + -1.26455 NA intron (NM_001033330, intron 2 of 19) L1M5|LINE|L1 122745 NM_001033330 333605 Mm.426168 NM_001033330 ENSMUSG00000049176 Frmpd4 Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso FERM and PDZ domain containing 4 protein-coding 0.005000 0.288557 83(ATTTGCAAAAGTATCT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1736 chr18 38153668 38153868 + -1.26455 NA Intergenic Intergenic 55994 NM_029357 75599 Mm.36560 NM_029357 ENSMUSG00000051375 Pcdh1 2010005A06Rik|AI585920 protocadherin 1 protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-494 chr10 101794898 101795098 + -1.26455 NA intron (NM_001205098, intron 1 of 7) Lx9|LINE|L1 22306 NR_037211 100526516 NR_037211 ENSMUSG00000092952 Mir3059 mir-3059|mmu-mir-3059 microRNA 3059 ncRNA 0.000000 0.402985 84(TTCTTATTGTGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2327 chr3 80506357 80506557 + -1.26455 NA Intergenic Intergenic 296378 NR_152148 14800 Mm.220224 NM_013540 ENSMUSG00000033981 Gria2 GluA2|GluR-B|Glur-2|Glur2|gluR-K2 glutamate receptor, ionotropic, AMPA2 (alpha 2) protein-coding 0.000000 0.388060 -9(GCTTTATTTTGAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1851 chr19 18984899 18985099 + -1.26455 NA intron (NM_001043354, intron 2 of 9) intron (NM_001043354, intron 2 of 9) 16118 NM_001289921 225998 Mm.234641 NM_146095 ENSMUSG00000036192 Rorb Nr1f2|RZR-beta|RZRB|Rorbeta|hstp RAR-related orphan receptor beta protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2098 chr2 114107609 114107809 + -1.26724 NA intron (NM_001290788, intron 32 of 33) intron (NM_001290788, intron 32 of 33) 42861 NR_105968 102465982 NR_105968 ENSMUSG00000098464 Mir7002 Gm27429|mmu-mir-7002 microRNA 7002 ncRNA 0.040000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2800 chr5 67290042 67290242 + -1.26724 NA 3' UTR (NM_028975, exon 8 of 8) 3' UTR (NM_028975, exon 8 of 8) -16813 NM_178651 109108 Mm.234455 NM_178651 ENSMUSG00000029221 Slc30a9 2310024J23Rik|AL024256|GAC63|HUEL|znT-9 solute carrier family 30 (zinc transporter), member 9 protein-coding 0.010000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-178 chr14 86360304 86360504 + -1.26724 NA Intergenic Intergenic 114434 NR_040457 75155 Mm.399239 NR_040457 ENSMUSG00000115271 4930529K09Rik 4930507G21Rik RIKEN cDNA 4930529K09 gene ncRNA 0.005000 0.393035 -20(CTTTTAATGAAAAAAG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-560 chr9 62915808 62916008 + -1.26724 NA intron (NM_019663, intron 6 of 13) ID_B1|SINE|B4 -53884 NR_003965 677044 Mm.422004 NR_003965 ENSMUSG00000074250 Gm10653 - ribsomal protein S2 pseudogene pseudo 0.000000 0.437811 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-247 chr17 15904527 15904727 + -1.26724 NA Intergenic Intergenic -78041 NM_178615 68799 Mm.293466 NM_178615 ENSMUSG00000048027 Rgmb 1110059F19Rik|DRAGON repulsive guidance molecule family member B protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1170 chr14 86254327 86254527 + -1.26724 NA intron (NR_040457, intron 1 of 3) intron (NR_040457, intron 1 of 3) 8457 NR_040457 75155 Mm.399239 NR_040457 ENSMUSG00000115271 4930529K09Rik 4930507G21Rik RIKEN cDNA 4930529K09 gene ncRNA 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3140 chr7 73328902 73329102 + -1.26816 NA intron (NR_040325, intron 1 of 1) intron (NR_040325, intron 1 of 1) 18622 NR_105062 100505025 Mm.387218 NR_105062 ENSMUSG00000108530 4930429H19Rik - RIKEN cDNA 4930429H19 gene ncRNA 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3318 chr8 37816540 37816740 + -1.26816 NA intron (NM_145841, intron 2 of 7) ORR1A2-int|LTR|ERVL-MaLR 435562 NR_029884 723860 NR_029884 ENSMUSG00000065457 Mir383 Mirn383|mir-383|mmu-mir-383 microRNA 383 ncRNA 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-670 chr11 85574953 85575153 + -1.26816 NA intron (NM_138681, intron 21 of 25) intron (NM_138681, intron 21 of 25) 144691 NR_045875 71489 Mm.442482 NR_045875 ENSMUSG00000086199 Bcas3os1 8430403D17Rik breast carcinoma amplified sequence 3, opposite strand 1 ncRNA 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-679 chr11 92144006 92144206 + -1.26816 NA Intergenic Intergenic -566551 NM_028547 73470 Mm.67677 NM_028547 ENSMUSG00000046755 Kif2b 1700063D03Rik kinesin family member 2B protein-coding 0.020000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-114 chr1 69294642 69294842 + -1.26816 NA Intergenic MLT1A1|LTR|ERVL-MaLR -186683 NM_010154 13869 Mm.442420 NM_010154 ENSMUSG00000062209 Erbb4 Her4|c-erbB-4 erb-b2 receptor tyrosine kinase 4 protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2295 chr3 65135045 65135245 + -1.26816 NA intron (NR_126080, intron 4 of 4) intron (NR_126080, intron 4 of 4) 26131 NM_010597 16497 Mm.316402 NM_010597 ENSMUSG00000027827 Kcnab1 Akr8a8|Kvbeta1.1|mKv(beta)1 potassium voltage-gated channel, shaker-related subfamily, beta member 1 protein-coding 0.010000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1379 chr15 91247345 91247545 + -1.26816 NA Intergenic Intergenic -55438 NM_011994 26874 Mm.295456 NM_011994 ENSMUSG00000055782 Abcd2 ABC39|ALDL1|ALDR|ALDRP ATP-binding cassette, sub-family D (ALD), member 2 protein-coding 0.010000 0.427861 25(CTTTTGTATTGTAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-167 chr1 96558392 96558592 + -1.26816 NA Intergenic MER67C|LTR|ERV1 104081 NR_040478 75159 Mm.243854 NR_040478 ENSMUSG00000100589 4930533P14Rik - RIKEN cDNA 4930533P14 gene ncRNA 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-62 chr1 42039189 42039389 + -1.26816 NA Intergenic L1M3|LINE|L1 655536 NR_027826 66297 Mm.45203 NM_183252 ENSMUSG00000060424 Pantr1 2610017I09Rik|Pou3f3os|linc-Brn1a POU domain, class 3, transcription factor 3 adjacent noncoding transcript 1 ncRNA 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-426 chr10 57644707 57644907 + -1.26816 NA intron (NM_001039051, intron 1 of 4) intron (NM_001039051, intron 1 of 4) -1062 NM_001039052 18768 Mm.262135 NM_008863 ENSMUSG00000019876 Pkib Pkibeta|Prkacn2 protein kinase inhibitor beta, cAMP dependent, testis specific protein-coding 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2121 chr2 128236640 128236840 + -1.26816 NA Intergenic Intergenic 109165 NM_001284410 12125 Mm.141083 NM_009754 ENSMUSG00000027381 Bcl2l11 1500006F24Rik|Bim|Bod|bcl2-L-11 BCL2-like 11 (apoptosis facilitator) protein-coding 0.000000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1301 chr15 43440518 43440718 + -1.26816 NA intron (NR_046064, intron 1 of 2) Lx4A|LINE|L1 36418 NR_046064 100038728 Mm.244168 NR_046064 ENSMUSG00000072592 Gm10373 - predicted gene 10373 ncRNA 0.005000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3219 chr7 122870971 122871171 + -1.26816 NA Intergenic L1M5|LINE|L1 99388 NR_045614 73951 Mm.389936 NR_045614 4930413G21Rik - RIKEN cDNA 4930413G21 gene ncRNA 0.015000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-335 chr10 9252409 9252609 + -1.26816 NA Intergenic Intergenic -366439 NM_175155 70097 Mm.338275 NM_175155 ENSMUSG00000015305 Sash1 1100001C18Rik|2500002E12Rik|A330076K04Rik|mKIAA0790 SAM and SH3 domain containing 1 protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-801 chr12 57017855 57018055 + -1.26816 NA intron (NM_172577, intron 1 of 9) intron (NM_172577, intron 1 of 9) 142688 NM_001167976 217593 Mm.32835 NM_172577 ENSMUSG00000035472 Slc25a21 9930033G19Rik|A630030I10|BB158148 solute carrier family 25 (mitochondrial oxodicarboxylate carrier), member 21 protein-coding 0.005000 0.402985 3(CCATTGTCTTCCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-111 chr1 68984593 68984793 + -1.26816 NA intron (NM_010154, intron 1 of 26) intron (NM_010154, intron 1 of 26) 123366 NM_010154 13869 Mm.442420 NM_010154 ENSMUSG00000062209 Erbb4 Her4|c-erbB-4 erb-b2 receptor tyrosine kinase 4 protein-coding 0.000000 0.308458 30(CTTTTCTTATTCAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2370 chr3 103589709 103589909 + -1.26816 NA intron (NM_001276676, intron 3 of 6) intron (NM_001276676, intron 3 of 6) 13683 NM_001276681 54524 Mm.88818 NM_018800 ENSMUSG00000027849 Syt6 3110037A08Rik|AW048930|sytVI synaptotagmin VI protein-coding 0.015000 0.552239 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1211 chr14 114465730 114465930 + -1.26816 NA Intergenic Intergenic -366135 NR_045661 75822 Mm.410813 NR_045661 ENSMUSG00000115320 4930524C18Rik - RIKEN cDNA 4930524C18 gene ncRNA 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-79 chr1 53250603 53250803 + -1.26816 NA intron (NM_153556, intron 5 of 12) Lx5c|LINE|L1 46325 NM_153556 227099 Mm.60499 NM_153556 ENSMUSG00000026098 Pms1 - PMS1 homolog 1, mismatch repair system component protein-coding 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1293 chr15 34902470 34902670 + -1.26816 NA intron (NM_019635, intron 10 of 10) intron (NM_019635, intron 10 of 10) 64521 NM_001271704 16539 Mm.71045 NM_181317 ENSMUSG00000050963 Kcns2 E130006J24Rik|Kv9.2 K+ voltage-gated channel, subfamily S, 2 protein-coding 0.010000 0.333333 -60(GTTTTCATAATAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1003 chr13 90560139 90560339 + -1.26816 NA Intergenic Intergenic 345116 NM_001145879 435376 Mm.292579 NM_001145879 ENSMUSG00000078958 Atp6ap1l EG435376 ATPase, H+ transporting, lysosomal accessory protein 1-like protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-598 chr11 38140265 38140465 + -1.26816 NA Intergenic Intergenic 379680 NR_040295 100502917 Mm.61144 NR_040295 Gm12130 - predicted gene 12130 ncRNA 0.005000 0.363184 85(TTTTACATAATAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3454 chr8 120184301 120184501 + -1.26816 NA Intergenic Intergenic -6932 NM_001033980 436062 Mm.334852 NM_001033980 ENSMUSG00000042269 Fam92b 1700120B06Rik family with sequence similarity 92, member B protein-coding 0.025000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1263 chr15 17982886 17983086 + -1.26816 NA Intergenic Intergenic 386641 NR_045711 70886 Mm.399021 NR_045711 ENSMUSG00000098150 4921515E04Rik - RIKEN cDNA 4921515E04 gene ncRNA 0.000000 0.268657 -45(ATTTGCATTAAAGTAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1162 chr14 78776715 78776915 + -1.26816 NA Intergenic Intergenic -44086 NM_001081336 380921 Mm.89591 NM_001081336 ENSMUSG00000034731 Dgkh 5930402B05Rik|D130015C16|DGK diacylglycerol kinase, eta protein-coding 0.025000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2161 chr2 145655481 145655681 + -1.26816 NA Intergenic Intergenic -45614 NR_033220 408057 Mm.486711 NR_033220 ENSMUSG00000001768 BC039771 - cDNA sequence BC039771 ncRNA 0.020000 0.572139 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1821 chr18 88693681 88693881 + -1.26816 NA Intergenic Intergenic 200426 NM_018821 54607 Mm.91920 NM_018821 ENSMUSG00000056153 Socs6 1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4 suppressor of cytokine signaling 6 protein-coding 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2257 chr3 49538670 49538870 + -1.26816 NA Intergenic L1_Mus4|LINE|L1 218546 NM_130448 73173 Mm.87246 NM_130448 ENSMUSG00000037892 Pcdh18 3110038E07Rik|BB095589|PCDH68L protocadherin 18 protein-coding 0.000000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2987 chr6 65602392 65602592 + -1.26816 NA intron (NM_001001495, intron 5 of 7) intron (NM_001001495, intron 5 of 7) 12094 NM_001001495 414084 Mm.117558 NM_001001495 ENSMUSG00000044162 Tnip3 9030611K07Rik|ABIN-3|LIND TNFAIP3 interacting protein 3 protein-coding 0.005000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2985 chr6 61832217 61832417 + -1.26816 NA intron (NM_183310, intron 9 of 10) intron (NM_183310, intron 9 of 10) -651507 NR_040287 100504262 Mm.438066 NR_040287 A730020E08Rik - RIKEN cDNA A730020E08 gene ncRNA 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2643 chr4 94832927 94833127 + -1.26816 NA intron (NM_001290549, intron 11 of 22) intron (NM_001290549, intron 11 of 22) 93738 NM_013690 21687 Mm.14313 NM_013690 ENSMUSG00000006386 Tek AA517024|Cd202b|Hyk|STK1|Tie-2|Tie2 TEK receptor tyrosine kinase protein-coding 0.005000 0.313433 72(TATTTATAATTCATT,+,0.00) -32(CTTTGCAGAAAAAAGA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-210 chr15 58576721 58576921 + -1.27037 NA intron (NM_001370912, intron 15 of 40) intron (NM_001370912, intron 15 of 40) 66773 NM_001370912 631797 NM_001370912 ENSMUSG00000037106 Fer1l6 EG631797 fer-1-like 6 (C. elegans) protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1796 chr18 71509923 71510123 + -1.27134 NA intron (NM_007831, intron 12 of 28) intron (NM_007831, intron 12 of 28) 841046 NM_007831 13176 Mm.167882 NM_007831 ENSMUSG00000060534 Dcc C030036D22Rik|Igdcc1 deleted in colorectal carcinoma protein-coding 0.005000 0.313433 -3(ATAAAAATAACAATTC,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-335 chr2 139310478 139310678 + -1.27134 NA Intergenic L1_Mur3|LINE|L1 -183335 NM_001356507 228677 Mm.100450 NM_175467 ENSMUSG00000039092 Sptlc3 C130053K05Rik serine palmitoyltransferase, long chain base subunit 3 protein-coding 0.000000 0.238806 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3601 chr9 88054138 88054338 + -1.27507 NA Intergenic Intergenic 271564 NR_162813 114482949 NR_162813 Mir12205 mmu-mir-12205 microRNA mir-12205 ncRNA 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-260 chr1 152653092 152653292 + -1.27507 NA intron (NM_001346118, intron 2 of 18) intron (NM_001346118, intron 2 of 18) -27975 NM_016846 19731 Mm.245270 NM_016846 ENSMUSG00000026482 Rgl1 Rgl|mKIAA0959 ral guanine nucleotide dissociation stimulator,-like 1 protein-coding 0.005000 0.388060 -45(ATTAGCACAACAGTAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-309 chr1 187183493 187183693 + -1.27507 NA intron (NM_029067, intron 3 of 6) intron (NM_029067, intron 3 of 6) 31853 NM_028848 74717 Mm.250430 NM_028848 ENSMUSG00000026611 Spata17 1700065F16Rik|4930504I07Rik|4930513F16Rik|MSRG-11 spermatogenesis associated 17 protein-coding 0.025000 0.353234 -40(AATAGAATAACAAAGC,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-209 chr15 57188018 57188218 + -1.27507 NA Intergenic Intergenic 77043 NM_001357930 210463 Mm.26555 NM_172378 ENSMUSG00000022366 Slc22a22 oat-pg solute carrier family 22 (organic cation transporter), member 22 protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1343 chr15 63364605 63364805 + -1.27507 NA Intergenic Intergenic 114903 NR_045279 432958 Mm.255105 NR_045279 ENSMUSG00000115520 Gm20740 - predicted gene, 20740 ncRNA 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3130 chr7 67719398 67719598 + -1.27507 NA intron (NM_001168475, intron 9 of 10) intron (NM_001168475, intron 9 of 10) 40244 NM_207663 233335 Mm.60526 NM_183312 ENSMUSG00000030554 Synm 4930412K21Rik|AI852401|Dmn|E130104F11|Syn|Synemin synemin, intermediate filament protein protein-coding 0.025000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-241 chr1 142867002 142867202 + -1.27507 NA Intergenic Intergenic -773595 NM_020025 26878 Mm.285580 NM_020025 ENSMUSG00000033849 B3galt2 - UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 protein-coding 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-424 chr10 56753321 56753521 + -1.27554 NA Intergenic Intergenic 321440 NR_152769 102640560 Mm.417249 NR_152768 Gm36595 - predicted gene, 36595 ncRNA 0.000000 0.447761 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-146 chr13 76961874 76962074 + -1.27596 NA intron (NM_030174, intron 17 of 20) intron (NM_030174, intron 17 of 20) 173494 NM_134071 105377 Mm.209730 NM_134071 ENSMUSG00000021597 Slf1 2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik SMC5-SMC6 complex localization factor 1 protein-coding 0.000000 0.323383 -94(CCATCCTCTTTCAAAT,+,0.00),40(ATTTACATCTCAAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-983 chr13 76961893 76962093 + -1.27596 NA intron (NM_030174, intron 17 of 20) Lx2A|LINE|L1 173475 NM_134071 105377 Mm.209730 NM_134071 ENSMUSG00000021597 Slf1 2700017A04Rik|AW545819|Ankrd32|Brctd1|Brctx|C730024G01Rik SMC5-SMC6 complex localization factor 1 protein-coding 0.000000 0.333333 21(ATTTACATCTCAAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-894 chr13 12246831 12247031 + -1.27596 NA intron (NM_001081128, intron 6 of 32) B3A|SINE|B2 11182 NM_001081128 238505 Mm.40335 NM_001081128 ENSMUSG00000021311 Mtr AI894170|D830038K18Rik|MS 5-methyltetrahydrofolate-homocysteine methyltransferase protein-coding 0.020000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1344 chr15 64944685 64944885 + -1.27596 NA Intergenic Intergenic -22489 NM_001331075 11514 Mm.1425 NM_009623 ENSMUSG00000022376 Adcy8 AC8|AW060868 adenylate cyclase 8 protein-coding 0.005000 0.442786 47(GTATACATGATAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3417 chr8 100105536 100105736 + -1.27599 NA Intergenic Intergenic 688962 NR_132435 234624 Mm.124595 NM_175479 ENSMUSG00000052479 A330008L17Rik - RIKEN cDNA A330008L17 gene ncRNA 0.005000 0.422886 -20(ATTTGCATCAGAGTGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2282 chr3 60452484 60452684 + -1.27599 NA Intergenic Lx5c|LINE|L1 -20246 NM_001253713 56758 Mm.255723 NM_020007 ENSMUSG00000027763 Mbnl1 Mbnl|mKIAA0428 muscleblind like splicing factor 1 protein-coding 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3408 chr8 92044989 92045189 + -1.27599 NA Intergenic Intergenic -243435 NM_001253822 16373 Mm.238044 NM_008393 ENSMUSG00000031734 Irx3 AI894186 Iroquois related homeobox 3 protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2814 chr5 80178864 80179064 + -1.27599 NA Intergenic Intergenic -841607 NM_001347368 319387 Mm.273631 NM_198702 ENSMUSG00000037605 Adgrl3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768 adhesion G protein-coupled receptor L3 protein-coding 0.005000 0.412935 -79(ACATTGTCTTACAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2761 chr5 40565994 40566194 + -1.27599 NA Intergenic Intergenic -921463 NM_010474 15476 Mm.12559 NM_010474 ENSMUSG00000051022 Hs3st1 3-Ost|D5Wsu110e|Hsg3ost heparan sulfate (glucosamine) 3-O-sulfotransferase 1 protein-coding 0.005000 0.303483 -85(AATAGCATCAGAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1281 chr15 27734756 27734956 + -1.27599 NA intron (NM_001081302, intron 55 of 56) intron (NM_001081302, intron 55 of 56) -53314 NM_198301 223433 Mm.266485 NM_198301 ENSMUSG00000056069 Otulinl 9830126M18|Fam105a OTU deubiquitinase with linear linkage specificity like protein-coding 0.010000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-237 chr1 141097601 141097801 + -1.27599 NA Intergenic Intergenic -441299 NR_040604 75910 Mm.483845 NR_040604 ENSMUSG00000102368 4930590L20Rik - RIKEN cDNA 4930590L20 gene ncRNA 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-819 chr12 70325364 70325564 + -1.27599 NA intron (NR_037248, intron 2 of 4) intron (NR_037248, intron 2 of 4) 16959 NR_037248 100526482 NR_037248 ENSMUSG00000078026 Mir466o Mir4660|mmu-mir-466o microRNA 466o ncRNA 0.020000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-397 chr10 37108709 37108909 + -1.27781 NA Intergenic (GAAAA)n|Simple_repeat|Simple_repeat 30117 NM_008538 17118 Mm.30059 NM_008538 ENSMUSG00000069662 Marcks Macs|PKCSL myristoylated alanine rich protein kinase C substrate protein-coding 0.010000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-693 chr11 99703947 99704147 + -1.27781 NA Intergenic RLTR22_Mus|LTR|ERVK -38087 NM_026834 68768 Mm.416844 NM_026834 ENSMUSG00000075566 Krtap4-6 1110054P19Rik keratin associated protein 4-6 protein-coding 0.005000 0.373134 30(CTTACATATTCATA,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-106 chr11 99703936 99704136 + -1.27781 NA Intergenic RLTR22_Mus|LTR|ERVK -38076 NM_026834 68768 Mm.416844 NM_026834 ENSMUSG00000075566 Krtap4-6 1110054P19Rik keratin associated protein 4-6 protein-coding 0.005000 0.373134 41(CTTACATATTCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-322 chr1 194930804 194931004 + -1.27915 NA Intergenic Intergenic -7917 NM_133654 12490 Mm.29798 NM_133654 ENSMUSG00000016494 Cd34 AU040960 CD34 antigen protein-coding 0.000000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-873 chr12 118540655 118540855 + -1.27937 NA Intergenic Intergenic -10562 NR_045947 100384890 Mm.484658 NR_045947 ENSMUSG00000113875 D230030E09Rik Npe Riken cDNA D230030E09 gene ncRNA 0.005000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-372 chr3 99443432 99443632 + -1.27964 NA Intergenic Intergenic 189772 NM_009323 21384 Mm.88761 NM_009323 ENSMUSG00000027868 Tbx15 Tbx14|Tbx8|de T-box 15 protein-coding 0.000000 0.447761 -21(ATAACAATGAGAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1319 chr15 52948392 52948592 + -1.28017 NA Intergenic Intergenic 236047 NM_027212 69790 Mm.195562 NM_027212 ENSMUSG00000038622 Med30 1810038N03Rik|2510044J04Rik|TRAP25|Thrap6 mediator complex subunit 30 protein-coding 0.015000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3096 chr7 10625683 10625883 + -1.28060 NA Intergenic Intergenic -7804 NM_134228 171262 Mm.222634 NM_134228 ENSMUSG00000045340 Vmn1r70 V1rd2|V1rl1 vomeronasal 1 receptor 70 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1215 chr14 117201207 117201407 + -1.28060 NA intron (NM_001079844, intron 2 of 9) intron (NM_001079844, intron 2 of 9) 276010 NM_011821 23888 Mm.440025 NM_011821 ENSMUSG00000058571 Gpc6 - glypican 6 protein-coding 0.000000 0.303483 34(TTAGAATCATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3440 chr8 111807267 111807467 + -1.28060 NA intron (NM_001368335, intron 5 of 6) B3A|SINE|B2 46970 NM_001368338 23837 Mm.279437 NM_011801 ENSMUSG00000031954 Cfdp1 AA408409|Bcnt|Bucentaur|Cfdp|cp27 craniofacial development protein 1 protein-coding 0.000000 0.412935 -26(TATTCTTATTCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2651 chr4 98223394 98223594 + -1.28060 NA Intergenic Intergenic 159771 NM_053157 94043 Mm.331719 NM_053157 ENSMUSG00000028563 Tm2d1 2310026L18Rik|AA990549|Bbp TM2 domain containing 1 protein-coding 0.025000 0.522388 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-254 chr17 59421500 59421700 + -1.28060 NA Intergenic Intergenic -408278 NM_001368393 67993 Mm.36507 NM_026497 ENSMUSG00000024228 Nudt12 0610016O18Rik nudix (nucleoside diphosphate linked moiety X)-type motif 12 protein-coding 0.030000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-817 chr12 69337894 69338094 + -1.28060 NA intron (NM_025441, intron 15 of 32) B1_Mur4|SINE|Alu 19182 NM_025441 66244 Mm.46705 NM_025441 ENSMUSG00000020982 Nemf 1500011I12Rik|4933405E14Rik|Sdccag1 nuclear export mediator factor protein-coding 0.000000 0.348259 -91(AATGCCTATTTATA,-,0.00) -84(ATTTATATAAAAAAAT,-,0.00),-49(ATTTACATAACACCAA,-,0.00),-26(AATAGCATAACAAATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2395 chr3 116216413 116216613 + -1.28060 NA Intergenic Intergenic 36971 NM_022427 64378 Mm.40025 NM_022427 ENSMUSG00000068696 Gpr88 AW061286|Strg G-protein coupled receptor 88 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-166 chr1 96128741 96128941 + -1.28060 NA Intergenic Intergenic -107083 NR_040467 73454 Mm.396229 NR_040467 ENSMUSG00000100062 1700063A18Rik - RIKEN cDNA 1700063A18 gene ncRNA 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-963 chr13 54161805 54162005 + -1.28060 NA Intergenic Intergenic -30224 NM_001010973 15466 Mm.57243 NM_008286 ENSMUSG00000034987 Hrh2 H2R|HH2R histamine receptor H2 protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-29 chr1 23867312 23867512 + -1.28060 NA intron (NM_028534, intron 4 of 9) intron (NM_028534, intron 4 of 9) 42324 NM_001290683 98366 Mm.329963 NM_028534 ENSMUSG00000026155 Smap1 1700056O10Rik|4921514B13Rik|4921525H11Rik|AI462175 small ArfGAP 1 protein-coding 0.010000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3240 chr7 133262262 133262462 + -1.28060 NA Intergenic Intergenic 134111 NR_046279 74970 Mm.491044 NR_046279 ENSMUSG00000109816 4930483O08Rik - RIKEN cDNA 4930483O08 gene ncRNA 0.000000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2134 chr2 136035345 136035545 + -1.28060 NA Intergenic Lx8b|LINE|L1 -16894 NM_001356548 76161 Mm.41638 NM_029530 ENSMUSG00000027270 Lamp5 3110035N03Rik|6330527O06Rik|BAD-LAMP|LAMP-5 lysosomal-associated membrane protein family, member 5 protein-coding 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2466 chr3 141574748 141574948 + -1.28060 NA intron (NM_001293561, intron 1 of 16) intron (NM_001293561, intron 1 of 16) 109284 NM_001293561 22253 Mm.24430 NM_009472 ENSMUSG00000059921 Unc5c B130051O18Rik|Unc5h3|rcm unc-5 netrin receptor C protein-coding 0.000000 0.328358 10(TTATTATCATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1921 chr19 57441573 57441773 + -1.28060 NA Intergenic Intergenic -11233 NM_029839 72133 Mm.258404 NM_028115 ENSMUSG00000025086 Trub1 2610009I02Rik|9030425C13Rik|AI448235|BB118943|C76870 TruB pseudouridine (psi) synthase family member 1 protein-coding 0.025000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2540 chr4 30974313 30974513 + -1.28060 NA Intergenic Lx8|LINE|L1 309817 NR_040655 75332 Mm.108636 NR_040655 4930556G01Rik - RIKEN cDNA 4930556G01 gene ncRNA 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3015 chr6 84078296 84078496 + -1.28060 NA intron (NM_001310152, intron 13 of 53) intron (NM_001310152, intron 13 of 53) 59010 NM_001310152 26903 Mm.220982 NM_021469 ENSMUSG00000033788 Dysf 2310004N10Rik|AI604795|D6Pas3 dysferlin protein-coding 0.000000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-729 chr12 9887156 9887356 + -1.28060 NA Intergenic Intergenic 312814 NM_011859 23967 Mm.45055 NM_011859 ENSMUSG00000048387 Osr1 Odd1|Osr odd-skipped related transcription factor 1 protein-coding 0.005000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-343 chr10 14939892 14940092 + -1.28060 NA Intergenic Intergenic 180045 NM_008703 18101 Mm.487342 NM_008703 ENSMUSG00000019865 Nmbr BB182387 neuromedin B receptor protein-coding 0.000000 0.288557 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2126 chr2 130689109 130689309 + -1.28060 NA intron (NM_001081162, intron 8 of 20) intron (NM_001081162, intron 8 of 20) 8310 NM_001081162 269356 Mm.441391 NM_001081162 ENSMUSG00000074796 Slc4a11 AI503023|BTR1|NaBC1 solute carrier family 4, sodium bicarbonate transporter-like, member 11 protein-coding 0.005000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1687 chr18 13335378 13335578 + -1.28060 NA Intergenic Intergenic 328488 NM_153087 225192 Mm.207073 NM_153087 ENSMUSG00000037346 Hrh4 AXOR35|BG26|GPCR105|GPRv53|H4|H4R|HH4R histamine receptor H4 protein-coding 0.005000 0.348259 7(GCATTTTCTTTGTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2555 chr4 37902491 37902691 + -1.28060 NA Intergenic RLTR13B2|LTR|ERVK 653188 NR_151605 102636890 Mm.109154 NR_151605 ENSMUSG00000086026 Gm12374 - predicted gene 12374 ncRNA 0.030000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1939 chr2 8770556 8770756 + -1.28281 NA Intergenic Intergenic -418859 NR_038180 73438 Mm.23558 NR_038180 ENSMUSG00000085580 1700061F12Rik - RIKEN cDNA 1700061F12 gene ncRNA 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2906 chr5 144411806 144412006 + -1.28281 NA Intergenic Intergenic 53381 NR_102372 100579137 NR_102372 ENSMUSG00000104600 Dmrt1i Dmr Dmrt1 interacting ncRNA ncRNA 0.020000 0.537313 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-339 chr2 146131178 146131378 + -1.28295 NA intron (NM_001369121, intron 22 of 26) ORR1C2|LTR|ERVL-MaLR -90719 NM_016889 53626 Mm.379070 NM_016889 ENSMUSG00000068154 Insm1 IA-1 insulinoma-associated 1 protein-coding 0.005000 0.487562 12(CCATTCTCATTCAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2162 chr2 146131194 146131394 + -1.28295 NA intron (NM_001369121, intron 22 of 26) ORR1C2|LTR|ERVL-MaLR -90703 NM_016889 53626 Mm.379070 NM_016889 ENSMUSG00000068154 Insm1 IA-1 insulinoma-associated 1 protein-coding 0.000000 0.442786 -4(CCATTCTCATTCAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-625 chr11 55795614 55795814 + -1.28544 NA Intergenic L1_Mur3|LINE|L1 -187516 NM_001290821 14654 Mm.89320 NM_020492 ENSMUSG00000000263 Glra1 nmf11|oscillator|ot|spasmodic|spd glycine receptor, alpha 1 subunit protein-coding 0.010000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1094 chr14 29801505 29801705 + -1.28544 NA Intergenic Intergenic -79741 NM_009785 12294 Mm.386754 NM_009785 ENSMUSG00000021991 Cacna2d3 Cacnad3|alapha2delta3 calcium channel, voltage-dependent, alpha2/delta subunit 3 protein-coding 0.005000 0.303483 41(TTTTTTTCATTTAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2462 chr3 139495922 139496122 + -1.28544 NA intron (NM_198659, intron 11 of 13) intron (NM_198659, intron 11 of 13) 284737 NR_153353 102635321 Mm.121751 NR_153353 ENSMUSG00000106505 Gm32693 - predicted gene, 32693 ncRNA 0.015000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3501 chr9 24477915 24478115 + -1.28544 NA intron (NM_001359948, intron 4 of 22) intron (NM_001359948, intron 4 of 22) 25125 NM_172920 244745 Mm.38526 NM_172920 ENSMUSG00000043067 Dpy19l1 1100001I19Rik|6030402K12|AI225861|AW558481 dpy-19-like 1 (C. elegans) protein-coding 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3021 chr6 89452528 89452728 + -1.28544 NA intron (NM_001167736, intron 4 of 6) intron (NM_001167736, intron 4 of 6) -90015 NM_008881 18844 Mm.3789 NM_008881 ENSMUSG00000030084 Plxna1 2600013D04Rik|NOV|PlexA1|Plxn1|mKIAA4053 plexin A1 protein-coding 0.020000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-629 chr11 57628187 57628387 + -1.28544 NA intron (NR_153850, intron 2 of 3) intron (NR_153850, intron 2 of 3) -17155 NM_134189 171212 Mm.271670 NM_134189 ENSMUSG00000020520 Galnt10 AU018154|C330012K04Rik|GalNAc-T10|GalNAc-T9|Galnt9|ppGaNTase polypeptide N-acetylgalactosaminyltransferase 10 protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2437 chr3 127734799 127734999 + -1.28544 NA intron (NM_027808, intron 1 of 13) intron (NM_027808, intron 1 of 13) 45628 NM_027808 71481 Mm.158704 NM_027808 ENSMUSG00000028028 Alpk1 8430410J10Rik|LAK alpha-kinase 1 protein-coding 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2787 chr5 57913579 57913779 + -1.28544 NA intron (NM_001122758, intron 2 of 2) intron (NM_001122758, intron 2 of 2) 195598 NM_018764 54216 Mm.332387 NM_018764 ENSMUSG00000029108 Pcdh7 - protocadherin 7 protein-coding 0.000000 0.353234 59(TTTTTGTCATGCAACT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-572 chr11 21157675 21157875 + -1.28544 NA Intergenic Intergenic 58906 NR_151470 108167888 NR_151470 2610024D14Rik - ATP synthase subunit g, mitochondrial pseudogene pseudo 0.005000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3387 chr8 80821517 80821717 + -1.28544 NA intron (NM_021356, intron 1 of 9) intron (NM_021356, intron 1 of 9) 58862 NM_021356 14388 Mm.277409 NM_021356 ENSMUSG00000031714 Gab1 AA408973|AW107238 growth factor receptor bound protein 2-associated protein 1 protein-coding 0.025000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1798 chr18 74592721 74592921 + -1.28544 NA intron (NM_201600, intron 4 of 38) intron (NM_201600, intron 4 of 38) -61697 NR_045368 73606 Mm.444734 NR_045368 1700120E14Rik - RIKEN cDNA 1700120E14 gene ncRNA 0.015000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2798 chr5 66550426 66550626 + -1.28544 NA intron (NM_001201413, intron 1 of 16) intron (NM_001201413, intron 1 of 16) 68291 NM_001201415 11787 Mm.5159 NM_009686 ENSMUSG00000029207 Apbb2 2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra amyloid beta (A4) precursor protein-binding, family B, member 2 protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1545 chr16 87261604 87261804 + -1.28544 NA Intergenic Intergenic -92481 NM_001159331 67768 Mm.296532 NM_026366 ENSMUSG00000044442 N6amt1 5830445C04Rik|Hemk2|Pred28 N-6 adenine-specific DNA methyltransferase 1 (putative) protein-coding 0.020000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3594 chr9 86055309 86055509 + -1.28544 NA Intergenic Intergenic 212557 NM_001164792 21983 Mm.20864 NM_011627 ENSMUSG00000035274 Tpbg 5T4|AW495680|WAIF1 trophoblast glycoprotein protein-coding 0.010000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3716 chrX 80396798 80396998 + -1.28544 NA Intergenic Intergenic -673746 NM_138751 192216 Mm.490421 NM_138751 ENSMUSG00000025666 Tmem47 3010015F07Rik|AI115536|BCMP1|Tm4sf10 transmembrane protein 47 protein-coding 0.000000 0.308458 -10(TCTTACTTTTTCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2885 chr5 126504788 126504988 + -1.28544 NA Intergenic Intergenic -525901 NR_040685 71247 Mm.399586 NR_040685 ENSMUSG00000105490 4933438B17Rik - RIKEN cDNA 4933438B17 gene ncRNA 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2901 chr5 141102506 141102706 + -1.28544 NA Intergenic Intergenic -102010 NM_175362 108723 Mm.46187 NM_175362 ENSMUSG00000036526 Card11 0610008L17Rik|2410011D02Rik|BIMP3|CARMA1 caspase recruitment domain family, member 11 protein-coding 0.015000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2777 chr5 49848008 49848208 + -1.28558 NA Intergenic Intergenic 210888 NM_133911 70693 Mm.272974 NM_133911 ENSMUSG00000029090 Adgra3 3830613O22Rik|AU044632|Gpr125|Tem5-like adhesion G protein-coupled receptor A3 protein-coding 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1702 chr18 22996786 22996986 + -1.28558 NA intron (NM_001361224, intron 1 of 10) intron (NM_001361224, intron 1 of 10) 41777 NM_001161483 319211 Mm.209896 NM_199024 ENSMUSG00000041923 Nol4 1700013J13Rik|4930568N03Rik|Gm1262 nucleolar protein 4 protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2582 chr4 53578457 53578657 + -1.28558 NA intron (NM_133891, intron 15 of 15) L1M4|LINE|L1 -52867 NM_001369182 319636 Mm.103464 NM_176966 ENSMUSG00000054752 Fsd1l A230072O16Rik|Ccdc10|Csdufd1|Fsd1nl fibronectin type III and SPRY domain containing 1-like protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1295 chr15 36883242 36883442 + -1.28560 NA Intergenic Intergenic -86413 NM_001253806 22631 Mm.3360 NM_011740 ENSMUSG00000022285 Ywhaz 1110013I11Rik|14-3-3zeta|AI596267|AL022924|AU020854 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide protein-coding 0.020000 0.532338 -17(CCTTTGTCAAGCAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1244 chr15 8949999 8950199 + -1.28560 NA Intergenic Lx8|LINE|L1 -17850 NM_198024 223332 Mm.321371 NM_198024 ENSMUSG00000048424 Ranbp3l C130037N17Rik RAN binding protein 3-like protein-coding 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3373 chr8 73894774 73894974 + -1.28560 NA Intergenic Intergenic -541334 NM_010687 16795 Mm.324371 NM_010687 ENSMUSG00000004383 Large1 BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd LARGE xylosyl- and glucuronyltransferase 1 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1163 chr14 80788464 80788664 + -1.28560 NA Intergenic Intergenic 788262 NM_001351947 380924 Mm.26456 NM_001030294 ENSMUSG00000022026 Olfm4 GC1|GW112|Gm296|Gm913|OlfD|pPD4 olfactomedin 4 protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1139 chr14 67742684 67742884 + -1.28560 NA TTS (NM_001285933) TTS (NM_001285933) -2397 NM_008145 14714 Mm.358309 NM_008145 ENSMUSG00000015812 Gnrh1 Gnrh|Gnrh2|LHRH|Lhrh1|Lnrh|hpg gonadotropin releasing hormone 1 protein-coding 0.005000 0.313433 19(CTTTAAAATACAAAGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1995 chr2 46053603 46053803 + -1.28560 NA Intergenic Intergenic 357098 NR_040497 69405 Mm.396184 NR_040497 ENSMUSG00000086202 1700019E08Rik - RIKEN cDNA 1700019E08 gene ncRNA 0.005000 0.338308 -74(ATATAGTCATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3124 chr7 64166802 64167002 + -1.28594 NA intron (NM_001039104, intron 1 of 26) intron (NM_001039104, intron 1 of 26) 13067 NM_001039104 17364 Mm.38875 NM_018752 ENSMUSG00000030523 Trpm1 4732499L03Rik|AI606771|Ltrpc1|Mlsn1 transient receptor potential cation channel, subfamily M, member 1 protein-coding 0.000000 0.502488 21(CCTTTCTCTTGCAGAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1172 chr14 86424530 86424730 + -1.28594 NA Intergenic ORR1D1|LTR|ERVL-MaLR 178660 NR_040457 75155 Mm.399239 NR_040457 ENSMUSG00000115271 4930529K09Rik 4930507G21Rik RIKEN cDNA 4930529K09 gene ncRNA 0.000000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-179 chr14 86424564 86424764 + -1.28594 NA Intergenic ORR1D1|LTR|ERVL-MaLR 178694 NR_040457 75155 Mm.399239 NR_040457 ENSMUSG00000115271 4930529K09Rik 4930507G21Rik RIKEN cDNA 4930529K09 gene ncRNA 0.000000 0.398010 83(CCATTCTTATTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2407 chr3 120237035 120237235 + -1.28688 NA Intergenic Intergenic -453747 NM_019550 56195 Mm.29966 NM_019550 ENSMUSG00000028134 Ptbp2 Ptb2|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 0.015000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-993 chr13 82035631 82035831 + -1.28688 NA Intergenic Intergenic 252484 NM_007684 12626 Mm.12481 NM_007684 ENSMUSG00000021537 Cetn3 MmCEN3 centrin 3 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3039 chr6 103264820 103265020 + -1.28688 NA Intergenic Intergenic -245956 NM_007697 12661 Mm.251288 NM_007697 ENSMUSG00000030077 Chl1 A530023M13Rik|AI465420|CALL|LICAM2 cell adhesion molecule L1-like protein-coding 0.005000 0.393035 40(TGATTCTCATTGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-373 chr10 27574029 27574229 + -1.28688 NA intron (NM_008481, intron 1 of 63) intron (NM_008481, intron 1 of 63) 42813 NM_008481 16773 Mm.256087 NM_008481 ENSMUSG00000019899 Lama2 5830440B04|dy|mKIAA4087|mer|merosin laminin, alpha 2 protein-coding 0.005000 0.248756 -66(CTATTTTCAGTTAAAT,+,0.00),19(CTATGAATGAGAAACA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-61 chr10 54798997 54799197 + -1.28688 NA Intergenic Intergenic 723175 NR_038016 100502920 Mm.403982 NR_038016 ENSMUSG00000097069 Gm16998 - predicted gene, 16998 ncRNA 0.020000 0.407960 2(CTTTGCATACAAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3100 chr7 29061793 29061993 + -1.28688 NA intron (NM_009109, intron 64 of 105) intron (NM_009109, intron 64 of 105) 21801 NR_035489 100316710 NR_035489 ENSMUSG00000089219 Mir1963 mir-1963|mmu-mir-1963 microRNA 1963 ncRNA 0.035000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1068 chr14 14788612 14788812 + -1.28688 NA intron (NM_001360510, intron 23 of 24) RSINE1|SINE|B4 -32103 NM_001195229 674895 Mm.317563 NM_001034865 ENSMUSG00000042567 Nek10 Gm282 NIMA (never in mitosis gene a)- related kinase 10 protein-coding 0.010000 0.393035 10(TCTTTTTCATTCTGAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2277 chr3 58311294 58311494 + -1.28688 NA Intergenic Intergenic -103326 NM_001347233 72033 Mm.218409 NM_001081229 ENSMUSG00000027806 Tsc22d2 1810043J12Rik|5530402M19Rik TSC22 domain family, member 2 protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-300 chr1 183052719 183052919 + -1.28688 NA Intergenic Intergenic 94738 NM_001278220 68897 Mm.327216 NM_026866 ENSMUSG00000030768 Disp1 1190008H24Rik|DispA dispatched RND transporter family member 1 protein-coding 0.025000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-419 chr10 54798976 54799176 + -1.28688 NA Intergenic Intergenic 723154 NR_038016 100502920 Mm.403982 NR_038016 ENSMUSG00000097069 Gm16998 - predicted gene, 16998 ncRNA 0.015000 0.417910 23(CTTTGCATACAAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2366 chr3 101977173 101977373 + -1.29009 NA Intergenic Intergenic -32872 NM_178777 18072 Mm.137286 NM_178777 ENSMUSG00000048540 Nhlh2 6230401I09Rik|Hen2|NSCL2|Nscl-2|bHLHa34 nescient helix loop helix 2 protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2195 chr2 169195261 169195461 + -1.29111 NA Intergenic LFSINE_Vert|SINE|tRNA 217092 NR_040326 75508 Mm.271256 NR_040326 ENSMUSG00000086348 1700017J07Rik - RIKEN cDNA 1700017J07 gene ncRNA 0.020000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-75 chr1 51708591 51708791 + -1.29111 NA Intergenic Intergenic -111973 NR_151621 100045066 Mm.404734 NR_151621 Gm17767 - predicted gene, 17767 ncRNA 0.005000 0.417910 -39(CTGTTGTTATTTAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-255 chr17 60698891 60699091 + -1.29111 NA Intergenic Lx|LINE|L1 -1685669 NM_001368393 67993 Mm.36507 NM_026497 ENSMUSG00000024228 Nudt12 0610016O18Rik nudix (nucleoside diphosphate linked moiety X)-type motif 12 protein-coding 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1024 chr13 103169600 103169800 + -1.29111 NA intron (NM_175171, intron 2 of 28) ID4|SINE|ID 164792 NM_175171 328329 Mm.202606 NM_175171 ENSMUSG00000034751 Mast4 4930420O11Rik|AI642422|mKIAA0303 microtubule associated serine/threonine kinase family member 4 protein-coding 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-677 chr11 91079250 91079450 + -1.29111 NA Intergenic Intergenic 274659 NR_045956 73922 Mm.233289 NR_045956 ENSMUSG00000085940 4930405D11Rik - RIKEN cDNA 4930405D11 gene ncRNA 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3165 chr7 85824234 85824434 + -1.29111 NA Intergenic Intergenic 51604 NM_001105186 620928 Mm.469906 NM_001105186 ENSMUSG00000070458 Vmn2r73 EG620928 vomeronasal 2, receptor 73 protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2712 chr5 4638423 4638623 + -1.29111 NA Intergenic L1MEf|LINE|L1 119693 NM_021457 14362 Mm.246003 NM_021457 ENSMUSG00000044674 Fzd1 AW227548|FZ-1|Fz1 frizzled class receptor 1 protein-coding 0.005000 0.288557 -26(CAAGTGTCTTTCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-356 chr3 67163961 67164161 + -1.29111 NA intron (NM_001356273, intron 4 of 9) intron (NM_001356273, intron 4 of 9) 178094 NM_001356273 66880 Mm.316418 NM_025822 ENSMUSG00000034544 Rsrc1 1200013F24Rik|SRrp53 arginine/serine-rich coiled-coil 1 protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2415 chr3 122061438 122061638 + -1.29111 NA intron (NM_007378, intron 4 of 49) L1M2|LINE|L1 17078 NM_007378 11304 Mm.3918 NM_007378 ENSMUSG00000028125 Abca4 AW050280|Abc10|Abcr|D430003I15Rik|RmP ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-786 chr12 46652126 46652326 + -1.29111 NA Intergenic Intergenic 166541 NM_001364637 664883 Mm.247195 NM_021361 ENSMUSG00000021047 Nova1 9430099M15Rik|G630039L02|Nova-1 neuro-oncological ventral antigen 1 protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-916 chr13 19640370 19640570 + -1.29111 NA Intergenic MTD|LTR|ERVL-MaLR 17295 NM_016687 20379 Mm.42095 NM_016687 ENSMUSG00000021319 Sfrp4 - secreted frizzled-related protein 4 protein-coding 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2467 chr3 142590698 142590898 + -1.29111 NA Intergenic Intergenic -4049 NM_010259 14468 Mm.457978 NM_010259 ENSMUSG00000040264 Gbp2b Gbp-1|Gbp1|Mag-1|Mpa-1|Mpa1 guanylate binding protein 2b protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-705 chr11 108757726 108757926 + -1.29332 NA intron (NM_145688, intron 3 of 6) intron (NM_145688, intron 3 of 6) 75208 NM_029586 76380 Mm.344071 NM_029586 ENSMUSG00000020728 Cep112 1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco centrosomal protein 112 protein-coding 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1861 chr19 25950723 25950923 + -1.29343 NA Intergenic Intergenic 278412 NM_145831 226049 Mm.275572 NM_145831 ENSMUSG00000048138 Dmrt2 Terra doublesex and mab-3 related transcription factor 2 protein-coding 0.010000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1342 chr15 63205226 63205426 + -1.29343 NA Intergenic Intergenic 274282 NR_045279 432958 Mm.255105 NR_045279 ENSMUSG00000115520 Gm20740 - predicted gene, 20740 ncRNA 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-225 chr1 130938239 130938439 + -1.29343 NA intron (NM_001355135, intron 1 of 3) intron (NM_001355135, intron 1 of 3) 1776 NM_001009940 329244 Mm.131480 NM_001009940 ENSMUSG00000016524 Il19 - interleukin 19 protein-coding 0.030000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-26 chr1 21487888 21488088 + -1.29343 NA intron (NM_001160139, intron 5 of 14) L1M3|LINE|L1 104432 NM_001113187 98582 Mm.326336 NM_001113187 ENSMUSG00000085079 Khdc1b AU014713|AU015226|AU024076|AY238603|C85331|C86372|C88118|Khdc1|Khdc1c KH domain containing 1B protein-coding 0.005000 0.288557 45(CTTTTTTTTTTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-363 chr10 24080333 24080533 + -1.29343 NA Intergenic Lx7|LINE|L1 3933 NM_001010830 215859 Mm.377239 NM_001010830 ENSMUSG00000096442 Taar8a Gm230|taR-8a trace amine-associated receptor 8A protein-coding 0.010000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2276 chr3 57776000 57776200 + -1.29343 NA intron (NR_130743, intron 3 of 9) Lx5c|LINE|L1 40043 NM_001304456 24017 Mm.274360 NM_011883 ENSMUSG00000036503 Rnf13 2010001H16Rik|Rzf ring finger protein 13 protein-coding 0.000000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3299 chr8 26239644 26239844 + -1.29343 NA Intergenic Intergenic 81575 NM_199042 73754 Mm.383241 NM_199042 ENSMUSG00000037214 Thap1 4833431A01Rik|AW490810 THAP domain containing, apoptosis associated protein 1 protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2810 chr5 75118941 75119141 + -1.29343 NA intron (NR_045792, intron 1 of 3) intron (NR_045792, intron 1 of 3) 8720 NR_045792 100503184 Mm.386273 NR_045792 ENSMUSG00000107192 Gm19583 - predicted gene, 19583 ncRNA 0.020000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1316 chr15 51225828 51226028 + -1.29343 NA Intergenic L1MC3|LINE|L1 169682 NR_045092 100502643 Mm.131987 NR_045092 ENSMUSG00000115654 Gm19303 - predicted gene, 19303 ncRNA 0.000000 0.338308 -18(ATTTAAATGACAACCT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2138 chr2 136753815 136754015 + -1.29343 NA intron (NM_001355254, intron 1 of 7) intron (NM_001355254, intron 1 of 7) 40229 NM_001355254 20614 Mm.45953 NM_011428 ENSMUSG00000027273 Snap25 Bdr|GENA70|SNAP-25|SUP|sp synaptosomal-associated protein 25 protein-coding 0.010000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3659 chr9 118127366 118127566 + -1.29343 NA intron (NM_026442, intron 1 of 3) (CA)n|Simple_repeat|Simple_repeat 22730 NM_026442 67899 Mm.9953 NM_026442 ENSMUSG00000039163 Cmc1 2010110K16Rik|2010312P05Rik|AI596001 COX assembly mitochondrial protein 1 protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3266 chr8 5676541 5676741 + -1.29343 NA Intergenic Intergenic -571354 NM_011388 20494 Mm.3500 NM_011388 ENSMUSG00000023073 Slc10a2 9130221J18Rik|AI605518|ASBT|IBAT|ISBT solute carrier family 10, member 2 protein-coding 0.005000 0.378109 -22(TCTTAGTCATGAATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3596 chr9 86617270 86617470 + -1.29343 NA intron (NM_008615, intron 7 of 13) intron (NM_008615, intron 7 of 13) 45317 NM_001145968 69519 Mm.272517 NM_027100 ENSMUSG00000032417 Rwdd2a 1700030C20Rik|AI848608|Rwdd2 RWD domain containing 2A protein-coding 0.015000 0.328358 22(ACATTCTTATACATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3228 chr7 126297988 126298188 + -1.29343 NA Intergenic Intergenic 25592 NM_145587 104175 Mm.29660 NM_145587 ENSMUSG00000042978 Sbk1 Sbk SH3-binding kinase 1 protein-coding 0.010000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2038 chr2 72252696 72252896 + -1.29343 NA intron (NM_019688, intron 28 of 29) intron (NM_019688, intron 28 of 29) -32841 NM_023057 65964 Mm.304143 NM_023057 ENSMUSG00000004085 Map3k20 AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak mitogen-activated protein kinase kinase kinase 20 protein-coding 0.015000 0.467662 -71(CATGAATATTCGTT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1425 chr16 18757285 18757485 + -1.29343 NA Intergenic RMER6D|LTR|ERVK -19462 NM_013805 12741 Mm.22768 NM_013805 ENSMUSG00000041378 Cldn5 AI854493|MBEC1|Tmvcf claudin 5 protein-coding 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1726 chr18 33942945 33943145 + -1.29343 NA intron (NM_013512, intron 2 of 23) Lx9|LINE|L1 64161 NM_013512 13824 Mm.3465 NM_013512 ENSMUSG00000024376 Epb41l4a Epb4.1l4|Epb4.1l4a|NBL4 erythrocyte membrane protein band 4.1 like 4a protein-coding 0.020000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2708 chr4 151534403 151534603 + -1.29343 NA intron (NM_001081557, intron 4 of 23) L1ME2z|LINE|L1 327265 NM_001195565 100072 Mm.318846 NM_001081557 ENSMUSG00000014592 Camta1 1810059M14Rik|2310058O09Rik|AI316882|AW987475|mKIAA0833 calmodulin binding transcription activator 1 protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3699 chrX 52853772 52853972 + -1.29343 NA Intergenic L1M4c|LINE|L1 -24859 NR_144496 624936 NR_144496 Pou5f1-rs8 EG624936|Gm6539|Oct4P4|Otf3-rs8|Otf3h POU domain, class 5, transcription factor 1, related sequence 8 pseudo 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2853 chr5 99242165 99242365 + -1.29343 NA intron (NM_145839, intron 2 of 13) intron (NM_145839, intron 2 of 13) 10662 NM_145839 320292 Mm.259074 NM_145839 ENSMUSG00000089809 Rasgef1b 4732452O09Rik|GPIgamma4|Gpig4 RasGEF domain family, member 1B protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3612 chr9 92613237 92613437 + -1.29343 NA Intergenic Intergenic -70468 NR_029474 78575 Mm.407669 NR_029474 ENSMUSG00000103622 B430319G15Rik D530025C14Rik RIKEN cDNA B430319G15 gene ncRNA 0.015000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1288 chr15 33115243 33115443 + -1.29343 NA intron (NM_176073, intron 1 of 7) intron (NM_176073, intron 1 of 7) 32214 NM_018755 54381 Mm.158251 NM_018755 ENSMUSG00000039007 Cpq 1190003P12Rik|2610034C17Rik|Hls2|Lal-1|Pgcp carboxypeptidase Q protein-coding 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1945 chr2 10647305 10647505 + -1.29343 NA Intergenic Intergenic 129250 NR_035418 100316831 NR_035418 ENSMUSG00000080594 Mir669h Mirn669h|mir-669h|mmu-mir-669h microRNA 669h ncRNA 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1836 chr19 11391693 11391893 + -1.29343 NA intron (NM_001310331, intron 6 of 6) RLTR28|LTR|ERVL -15868 NM_029499 64380 Mm.440715 NM_029499 ENSMUSG00000024675 Ms4a4c 5830413L19Rik|AI449185|Ms4a9 membrane-spanning 4-domains, subfamily A, member 4C protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-522 chr10 115618478 115618678 + -1.29343 NA Intergenic Lx8|LINE|L1 -30798 NM_010195 14160 Mm.42103 NM_010195 ENSMUSG00000020140 Lgr5 FEX|Gpr49 leucine rich repeat containing G protein coupled receptor 5 protein-coding 0.025000 0.447761 29(ATTTGCAACAGAAGGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3505 chr9 28446006 28446206 + -1.29343 NA intron (NM_177906, intron 1 of 6) intron (NM_177906, intron 1 of 6) 41778 NM_177906 330908 Mm.379474 NM_177906 ENSMUSG00000062257 Opcml 2900075O15Rik|3732419F12|AI844366|B930023M13Rik|C230027C17|Gm181|Obcam opioid binding protein/cell adhesion molecule-like protein-coding 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2223 chr3 19501215 19501415 + -1.29343 NA Intergenic RLTR13B1|LTR|ERVK -7280 NM_025489 66326 Mm.45615 NM_025489 ENSMUSG00000027606 Dnajc5b 1700008A05Rik DnaJ heat shock protein family (Hsp40) member C5 beta protein-coding 0.020000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-375 chr3 101977089 101977289 + -1.29399 NA Intergenic Intergenic -32956 NM_178777 18072 Mm.137286 NM_178777 ENSMUSG00000048540 Nhlh2 6230401I09Rik|Hen2|NSCL2|Nscl-2|bHLHa34 nescient helix loop helix 2 protein-coding 0.005000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-499 chr7 82363568 82363768 + -1.29478 NA intron (NM_001190374, intron 2 of 29) intron (NM_001190374, intron 2 of 29) 27974 NM_001190374 269959 Mm.65306 NM_001190374 ENSMUSG00000070469 Adamtsl3 9230119C12Rik|C130057K09|mKIAA1233 ADAMTS-like 3 protein-coding 0.020000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3541 chr9 51364116 51364316 + -1.29478 NA Intergenic Intergenic -35299 NM_027217 69809 Mm.75315 NM_027217 ENSMUSG00000036027 1810046K07Rik - RIKEN cDNA 1810046K07 gene protein-coding 0.015000 0.457711 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-558 chr9 51364093 51364293 + -1.29478 NA Intergenic Intergenic -35276 NM_027217 69809 Mm.75315 NM_027217 ENSMUSG00000036027 1810046K07Rik - RIKEN cDNA 1810046K07 gene protein-coding 0.015000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1254 chr15 14262644 14262844 + -1.29478 NA Intergenic Intergenic -1089069 NM_007666 12563 Mm.57048 NM_007666 ENSMUSG00000039385 Cdh6 cad6 cadherin 6 protein-coding 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2319 chr3 76827611 76827811 + -1.29478 NA Intergenic Intergenic 752128 NM_001253719 213262 Mm.379337 NM_178673 ENSMUSG00000034098 Fstl5 9130207J01Rik follistatin-like 5 protein-coding 0.005000 0.368159 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-359 chr3 76827610 76827810 + -1.29478 NA Intergenic Intergenic 752127 NM_001253719 213262 Mm.379337 NM_178673 ENSMUSG00000034098 Fstl5 9130207J01Rik follistatin-like 5 protein-coding 0.005000 0.373134 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-189 chr15 14262688 14262888 + -1.29478 NA Intergenic RLTR20A4|LTR|ERVK -1089113 NM_007666 12563 Mm.57048 NM_007666 ENSMUSG00000039385 Cdh6 cad6 cadherin 6 protein-coding 0.000000 0.358209 50(CATGTATATGTATG,+,0.00),50(CATGTATATGTATG,-,0.00) 43(GTGTTCTCATGTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3655 chr9 116489625 116489825 + -1.29484 NA Intergenic Intergenic 300545 NR_152204 100043817 Mm.404276 NR_152204 Gm4668 - predicted gene 4668 ncRNA 0.015000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-265 chr18 27486398 27486598 + -1.29484 NA Intergenic ORR1C2-int|LTR|ERVL-MaLR -1073666 NR_045398 320624 Mm.50107 NR_045398 ENSMUSG00000117473 4930474G06Rik - RIKEN cDNA 4930474G06 gene ncRNA 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1709 chr18 27486405 27486605 + -1.29484 NA Intergenic ORR1C2-int|LTR|ERVL-MaLR -1073659 NR_045398 320624 Mm.50107 NR_045398 ENSMUSG00000117473 4930474G06Rik - RIKEN cDNA 4930474G06 gene ncRNA 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1150 chr14 73394662 73394862 + -1.29484 NA Intergenic Intergenic -9473 NM_008410 16432 Mm.4266 NM_008410 ENSMUSG00000022108 Itm2b AI256040|Bri|Bri2|Bricd2b|D14Sel6|E25BMM|imBRI2 integral membrane protein 2B protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3112 chr7 51510973 51511173 + -1.29631 NA promoter-TSS (NM_177694) promoter-TSS (NM_177694) 44 NR_073508 233246 Mm.254431 NM_177694 ENSMUSG00000055489 Ano5 9330162L24|Gdd1|Tmem16e anoctamin 5 protein-coding 0.045000 0.611940 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2409 chr3 121463644 121463844 + -1.29631 NA intron (NM_145394, intron 12 of 14) intron (NM_145394, intron 12 of 14) 37203 NM_028044 71994 Mm.275555 NM_028044 ENSMUSG00000053931 Cnn3 1600014M03Rik|C85854|Calpo3 calponin 3, acidic protein-coding 0.015000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3033 chr6 99888141 99888341 + -1.29631 NA Intergenic Intergenic -161849 NM_001037539 50501 Mm.87365 NM_015768 ENSMUSG00000030069 Prok2 Bv8|PK2|Prok1 prokineticin 2 protein-coding 0.015000 0.447761 -19(CTATTCTCATTTAACT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-33 chr1 172921330 172921530 + -1.29857 NA Intergenic Intergenic -26376 NM_011318 20219 Mm.330510 NM_011318 ENSMUSG00000026542 Apcs Sap serum amyloid P-component protein-coding 0.000000 0.417910 -21(TCTTTCTCATGTAAAC,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-343 chr2 160815355 160815555 + -1.30022 NA intron (NM_177263, intron 2 of 3) RMER6C|LTR|ERVK 57535 NM_177263 320799 Mm.436734 NM_177263 ENSMUSG00000035877 Zhx3 1810059C13Rik|4932418O04Rik|9530010N21Rik|Tix1|mKIAA0395 zinc fingers and homeoboxes 3 protein-coding 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1775 chr18 56979496 56979696 + -1.30022 NA Intergenic Intergenic -4217 NM_029909 77422 Mm.256874 NM_029909 ENSMUSG00000024592 C330018D20Rik AU018666 RIKEN cDNA C330018D20 gene protein-coding 0.005000 0.378109 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-242 chr16 87923890 87924090 + -1.30022 NA intron (NM_146072, intron 13 of 16) intron (NM_146072, intron 13 of 16) 14719 NR_155304 105246151 Mm.449986 NR_155304 4930590A17Rik - RIKEN cDNA 4930590A17 gene ncRNA 0.005000 0.258706 -74(TTTTTTTTTTTTAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3023 chr6 92015028 92015228 + -1.30022 NA intron (NM_172731, intron 2 of 20) intron (NM_172731, intron 2 of 20) 36163 NM_172731 232237 Mm.295740 NM_172731 ENSMUSG00000034037 Fgd5 C330025N11Rik|ZFYVE23|mFLJ00274 FYVE, RhoGEF and PH domain containing 5 protein-coding 0.010000 0.616915 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1948 chr2 13391950 13392150 + -1.30022 NA intron (NM_001081084, intron 28 of 66) intron (NM_001081084, intron 28 of 66) 99826 NM_001081084 65969 Mm.313915 NM_001081084 ENSMUSG00000026726 Cubn AA408369|AL022750|D2Wsu88e cubilin (intrinsic factor-cobalamin receptor) protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-812 chr12 64896336 64896536 + -1.30022 NA Intergenic Intergenic -21475 NM_001025605 217648 Mm.341586 NM_001025605 ENSMUSG00000047227 Gm527 - predicted gene 527 protein-coding 0.020000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3482 chr9 9368811 9369011 + -1.30127 NA Intergenic Intergenic -129898 NM_027823 71544 Mm.334955 NM_027823 ENSMUSG00000050730 Arhgap42 9030420J04Rik|BE136619 Rho GTPase activating protein 42 protein-coding 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-192 chr1 109828490 109828690 + -1.30127 NA Intergenic T-rich|Low_complexity|Low_complexity -154310 NM_001316743 241201 Mm.213407 NM_172853 ENSMUSG00000026312 Cdh7 9330156F07Rik|CDH7L1 cadherin 7, type 2 protein-coding 0.000000 0.318408 -8(TTTTTTTTATTTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3574 chr9 78698369 78698569 + -1.30127 NA intron (NM_153098, intron 25 of 32) intron (NM_153098, intron 25 of 32) 82923 NM_153098 235505 Mm.32955 NM_153098 ENSMUSG00000046186 Cd109 9930012E15Rik|AI480638|GARP CD109 antigen protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3127 chr7 66487536 66487736 + -1.30127 NA Intergenic Lx8|LINE|L1 -60159 NM_053080 56847 Mm.140988 NM_053080 ENSMUSG00000015134 Aldh1a3 ALDH6|RALDH3|V1 aldehyde dehydrogenase family 1, subfamily A3 protein-coding 0.000000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3094 chr7 6760442 6760642 + -1.30127 NA intron (NM_001360502, intron 2 of 7) intron (NM_001360502, intron 2 of 7) 29959 NM_001290994 57775 Mm.40752 NM_021323 ENSMUSG00000051527 Usp29 Ocat ubiquitin specific peptidase 29 protein-coding 0.010000 0.432836 -47(CCTTTTGTATGTTAAT,+,0.00),-26(TCTTTCTTTTGAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2287 chr3 62043020 62043220 + -1.30127 NA Intergenic Intergenic -295657 NM_001081295 622434 Mm.153974 NM_001081295 ENSMUSG00000036885 Arhgef26 4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF Rho guanine nucleotide exchange factor (GEF) 26 protein-coding 0.000000 0.308458 30(CATGAAATATGTATT,+,0.00) 61(AGTTGAATGACAAAGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2760 chr5 37999661 37999861 + -1.30127 NA Intergenic Intergenic -39469 NM_026959 71116 Mm.18959 NM_026959 ENSMUSG00000029125 Stx18 1810035L21Rik|4933425D03Rik|AU041562 syntaxin 18 protein-coding 0.000000 0.452736 13(ATATTAATATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-11 chr1 11251914 11252114 + -1.30127 NA intron (NM_029525, intron 35 of 39) intron (NM_029525, intron 35 of 39) -11949 NM_001033636 109294 Mm.123247 NM_029525 ENSMUSG00000048960 Prex2 6230420N16Rik|AI316880|AI553603|C030045D06Rik|D430013K02|Depdc2|P-Rex2 phosphatidylinositol-3,4,5-trisphosphate-dependent Rac exchange factor 2 protein-coding 0.000000 0.422886 -53(AGTTGAAAGAGAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3108 chr7 49189210 49189410 + -1.30127 NA intron (NM_001111016, intron 2 of 38) L1ME2|LINE|L1 -27152 NR_154465 108167511 Mm.400599 NR_154465 9130015G15Rik - RIKEN cDNA 9130015G15 gene ncRNA 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-418 chr10 54556445 54556645 + -1.30127 NA Intergenic Intergenic 480623 NR_038016 100502920 Mm.403982 NR_038016 ENSMUSG00000097069 Gm16998 - predicted gene, 16998 ncRNA 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2144 chr2 139326919 139327119 + -1.30127 NA Intergenic Intergenic -166894 NM_001356507 228677 Mm.100450 NM_175467 ENSMUSG00000039092 Sptlc3 C130053K05Rik serine palmitoyltransferase, long chain base subunit 3 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-898 chr13 14911003 14911203 + -1.30127 NA Intergenic Intergenic 280845 NM_134067 105351 Mm.41450 NM_134067 ENSMUSG00000039182 AW209491 - expressed sequence AW209491 protein-coding 0.000000 0.373134 53(ATATGCAAGATAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3577 chr9 79144909 79145109 + -1.30127 NA Intergenic Lx4A|LINE|L1 374293 NR_045336 100038575 Mm.367838 NR_045336 ENSMUSG00000111765 Gm10635 - predicted gene 10635 ncRNA 0.005000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3502 chr9 25042867 25043067 + -1.30127 NA Intergenic Intergenic 68759 NR_153861 102631612 Mm.410759 NR_153861 E130101E03Rik - RIKEN cDNA E130101E03 gene ncRNA 0.020000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2132 chr2 134494289 134494489 + -1.30127 NA Intergenic Intergenic 59963 NM_010403 15112 Mm.26634 NM_010403 ENSMUSG00000027261 Hao1 GOX|Gox1|Hao-1 hydroxyacid oxidase 1, liver protein-coding 0.005000 0.338308 13(AATAAATTATGGATT,+,0.00),13(AATAAATTATGGATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2083 chr2 108535676 108535876 + -1.30127 NA Intergenic Lx2|LINE|L1 742514 NM_029790 76894 Mm.330451 NM_029790 ENSMUSG00000057234 Mettl15 0610027B03Rik|AI303697|AW049952|Mett5d1 methyltransferase like 15 protein-coding 0.015000 0.552239 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1988 chr2 43535783 43535983 + -1.30127 NA Intergenic Intergenic -19442 NM_001289593 70789 Mm.105278 NM_027552 ENSMUSG00000026866 Kynu 4432411A05Rik kynureninase protein-coding 0.010000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2404 chr3 120020356 120020556 + -1.30127 NA Intergenic Intergenic -237068 NM_019550 56195 Mm.29966 NM_019550 ENSMUSG00000028134 Ptbp2 Ptb2|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 0.005000 0.417910 4(TTATGCTTATGTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2357 chr3 99443394 99443594 + -1.30182 NA Intergenic Intergenic 189734 NM_009323 21384 Mm.88761 NM_009323 ENSMUSG00000027868 Tbx15 Tbx14|Tbx8|de T-box 15 protein-coding 0.000000 0.442786 17(ATAACAATGAGAATAA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-388 chr3 151533640 151533840 + -1.30272 NA intron (NM_133222, intron 13 of 15) ID_B1|SINE|B4 95858 NM_133222 170757 Mm.317261 NM_133222 ENSMUSG00000039167 Adgrl4 1110033N21Rik|ETL1|Eltd1|Etl adhesion G protein-coupled receptor L4 protein-coding 0.005000 0.388060 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-205 chr15 52948268 52948468 + -1.30272 NA Intergenic Intergenic 235923 NM_027212 69790 Mm.195562 NM_027212 ENSMUSG00000038622 Med30 1810038N03Rik|2510044J04Rik|TRAP25|Thrap6 mediator complex subunit 30 protein-coding 0.015000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2913 chr5 151363744 151363944 + -1.30305 NA Intergenic Intergenic -4831 NR_045699 625175 Mm.443286 NR_045699 ENSMUSG00000097321 1700028E10Rik A630054D14|Gm6561 RIKEN cDNA 1700028E10 gene ncRNA 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1895 chr19 43560498 43560698 + -1.30305 NA Intergenic Intergenic -35993 NM_010324 14718 Mm.19039 NM_010324 ENSMUSG00000025190 Got1 AI789014|Got-1|cAspAT|cCAT glutamic-oxaloacetic transaminase 1, soluble protein-coding 0.005000 0.427861 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-302 chr2 8770146 8770346 + -1.30415 NA Intergenic Intergenic -419269 NR_038180 73438 Mm.23558 NR_038180 ENSMUSG00000085580 1700061F12Rik - RIKEN cDNA 1700061F12 gene ncRNA 0.010000 0.293532 53(AATAAATTATTCAAA,-,0.00) -49(TCTTGGTTATTAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1412 chr16 9385489 9385689 + -1.30464 NA Intergenic Intergenic 555489 NM_001081400 69053 Mm.390868 NM_001081400 ENSMUSG00000022507 1810013L24Rik 1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903 RIKEN cDNA 1810013L24 gene protein-coding 0.010000 0.407960 21(TGTTTCCTTTGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1644 chr17 76083504 76083704 + -1.30464 NA Intergenic L1MA5|LINE|L1 222581 NR_033456 100043885 Mm.127562 NR_033456 ENSMUSG00000117539 Gm4710 - predicted gene 4710 ncRNA 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3654 chr9 116489421 116489621 + -1.30464 NA Intergenic Intergenic 300341 NR_152204 100043817 Mm.404276 NR_152204 Gm4668 - predicted gene 4668 ncRNA 0.000000 0.447761 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-373 chr3 101145756 101145956 + -1.30464 NA Intergenic Intergenic -35690 NM_011197 19221 Mm.24807 NM_011197 ENSMUSG00000027864 Ptgfrn 4833445A08Rik|AU042434|CD9P-1|EWI-F|FPRP|Trim45 prostaglandin F2 receptor negative regulator protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-529 chr10 121228156 121228356 + -1.30825 NA Intergenic Intergenic -25607 NR_152796 74647 Mm.370609 NR_152796 ENSMUSG00000112846 4930432O09Rik - RIKEN cDNA 4930432O09 gene ncRNA 0.050000 0.527363 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-404 chr4 70192117 70192317 + -1.30825 NA Intergenic Intergenic 218218 NM_001313762 214444 Mm.370777 NM_145990 ENSMUSG00000039298 Cdk5rap2 2900018K03Rik|an|mKIAA1633 CDK5 regulatory subunit associated protein 2 protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-733 chr12 12549437 12549637 + -1.30825 NA Intergenic Intergenic 120380 NR_136889 102637952 Mm.421393 NR_136889 Gm34637 - predicted gene, 34637 ncRNA 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1247 chr15 10643229 10643429 + -1.30825 NA intron (NM_030690, intron 2 of 17) intron (NM_030690, intron 2 of 17) 43036 NR_033541 100038608 Mm.450744 NR_033541 ENSMUSG00000115667 Gm10389 - predicted gene 10389 ncRNA 0.015000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2034 chr2 70013686 70013886 + -1.30825 NA intron (NM_177783, intron 33 of 38) MTC|LTR|ERVL-MaLR -25340 NM_177376 329421 Mm.99648 NM_177376 ENSMUSG00000042064 Myo3b A430065P19Rik myosin IIIB protein-coding 0.000000 0.373134 -81(CATGAAAATGCACT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3332 chr8 44389269 44389469 + -1.30825 NA Intergenic Intergenic -560839 NM_001081286 14107 Mm.27365 NM_001081286 ENSMUSG00000070047 Fat1 2310038E12Rik|AU023433|Fath|mFat1 FAT atypical cadherin 1 protein-coding 0.000000 0.407960 -24(CCATTGTTTTGTACAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-519 chr8 44389280 44389480 + -1.30825 NA Intergenic Intergenic -560828 NM_001081286 14107 Mm.27365 NM_001081286 ENSMUSG00000070047 Fat1 2310038E12Rik|AU023433|Fath|mFat1 FAT atypical cadherin 1 protein-coding 0.000000 0.402985 -35(CCATTGTTTTGTACAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3123 chr7 64101010 64101210 + -1.30825 NA Intergenic Intergenic -52725 NM_001039104 17364 Mm.38875 NM_018752 ENSMUSG00000030523 Trpm1 4732499L03Rik|AI606771|Ltrpc1|Mlsn1 transient receptor potential cation channel, subfamily M, member 1 protein-coding 0.015000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3680 chrX 19257649 19257849 + -1.30860 NA Intergenic Intergenic -110778 NR_029807 723828 NR_029807 ENSMUSG00000065471 Mir222 Mirn222|mir-222|mmu-mir-222 microRNA 222 ncRNA 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2975 chr6 51289551 51289751 + -1.30860 NA Intergenic MLT1C|LTR|ERVL-MaLR -19741 NR_029719 387166 NR_029719 ENSMUSG00000065505 Mir148a Mirn148|Mirn148a|mir-148a microRNA 148a ncRNA 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2873 chr5 117153918 117154118 + -1.30860 NA intron (NM_001081308, intron 1 of 19) intron (NM_001081308, intron 1 of 19) 20430 NM_183306 330177 Mm.24343 NM_183306 ENSMUSG00000061288 Taok3 2900006A08Rik|A130052D22|A430105I05Rik TAO kinase 3 protein-coding 0.025000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-555 chr11 16161435 16161635 + -1.30860 NA Intergenic Intergenic -96207 NM_145967 211739 Mm.284015 NM_145967 ENSMUSG00000048834 Vstm2a Vstm2 V-set and transmembrane domain containing 2A protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3360 chr8 63380898 63381098 + -1.30860 NA Intergenic Intergenic 429653 NM_001361918 72902 Mm.334552 NM_023689 ENSMUSG00000054162 Spock3 2900045C01Rik|AI428471|mKIAA4039 sparc/osteonectin, cwcv and kazal-like domains proteoglycan 3 protein-coding 0.010000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1356 chr15 77207139 77207339 + -1.30860 NA intron (NM_175387, intron 2 of 12) intron (NM_175387, intron 2 of 12) 38369 NM_001358772 93686 Mm.202774 NM_053104 ENSMUSG00000033565 Rbfox2 Fbm2|Fxh|Hrnbp2|Rbm9 RNA binding protein, fox-1 homolog (C. elegans) 2 protein-coding 0.010000 0.452736 72(ATATACATAAGAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2674 chr4 115877357 115877557 + -1.30860 NA intron (NM_001285488, intron 13 of 13) intron (NM_001285488, intron 13 of 13) -6943 NM_001320545 654462 Mm.388913 NM_001039124 ENSMUSG00000073774 Kncn Kino|L5 kinocilin protein-coding 0.010000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3227 chr7 126266084 126266284 + -1.30860 NA intron (NM_001360811, intron 1 of 3) intron (NM_001360811, intron 1 of 3) -6312 NM_145587 104175 Mm.29660 NM_145587 ENSMUSG00000042978 Sbk1 Sbk SH3-binding kinase 1 protein-coding 0.015000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1917 chr19 53711305 53711505 + -1.30860 NA intron (NM_001170847, intron 1 of 13) intron (NM_001170847, intron 1 of 13) 34099 NM_001170847 73713 Mm.313695 NM_001170847 ENSMUSG00000043639 Rbm20 1110018J23Rik|2010003H22Rik|AI646761 RNA binding motif protein 20 protein-coding 0.020000 0.552239 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1304 chr15 44378337 44378537 + -1.30860 NA intron (NM_001113554, intron 9 of 9) L1MA4A|LINE|L1 -49674 NM_175009 223527 Mm.291828 NM_175009 ENSMUSG00000022338 Eny2 1810057B09Rik|6720481I12|DC6|Ey2 ENY2 transcription and export complex 2 subunit protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-784 chr12 46040786 46040986 + -1.30860 NA Intergenic Intergenic 777881 NM_001364637 664883 Mm.247195 NM_021361 ENSMUSG00000021047 Nova1 9430099M15Rik|G630039L02|Nova-1 neuro-oncological ventral antigen 1 protein-coding 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2549 chr4 34274433 34274633 + -1.30860 NA Intergenic Intergenic -224466 NM_026293 67652 Mm.55848 NM_026293 ENSMUSG00000028264 Spaca1 1700124L11Rik|4930540L03Rik sperm acrosome associated 1 protein-coding 0.010000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2867 chr5 112501294 112501494 + -1.30860 NA intron (NM_001253917, intron 1 of 15) intron (NM_001253917, intron 1 of 15) 51968 NM_001177504 625464 Mm.389676 NM_001177504 ENSMUSG00000072722 Gm6588 EG625464 predicted gene 6588 protein-coding 0.000000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-488 chr10 99297759 99297959 + -1.30860 NA Intergenic L2c|LINE|L2 34628 NM_026268 67603 Mm.1791 NM_026268 ENSMUSG00000019960 Dusp6 1300019I03Rik|MKP-3|MKP3|PYST1 dual specificity phosphatase 6 protein-coding 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-353 chr10 18200734 18200934 + -1.30860 NA intron (NM_001370991, intron 2 of 21) intron (NM_001370991, intron 2 of 21) 9993 NM_001370991 0.035000 0.497512 -37(ATTAACAAAACACAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1322 chr15 53556400 53556600 + -1.30860 NA intron (NM_177225, intron 4 of 4) intron (NM_177225, intron 4 of 4) 57779 NR_039538 100628567 NR_039538 ENSMUSG00000104794 Mir28c mmu-mir-28c microRNA 28c ncRNA 0.015000 0.437811 -23(CTATTGGGATGAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2910 chr5 146445449 146445649 + -1.31044 NA intron (NM_145155, intron 3 of 9) B3|SINE|B2 -36394 NM_001243104 623198 Mm.489582 NM_001243104 ENSMUSG00000096344 Gm6408 - predicted gene 6408 protein-coding 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1864 chr19 27489001 27489201 + -1.31207 NA Intergenic L1MA4|LINE|L1 59064 NR_027987 107372 Mm.17942 NM_175354 C030016D13Rik AW413347 RIKEN cDNA C030016D13 gene ncRNA 0.005000 0.388060 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-220 chr16 16128600 16128800 + -1.31538 NA intron (NM_001355731, intron 3 of 18) L1_Mus3|LINE|L1 18151 NM_146068 224008 Mm.244703 NM_146068 ENSMUSG00000041974 Spidr 2310008H04Rik|Kiaa0146 scaffolding protein involved in DNA repair protein-coding 0.010000 0.333333 -44(TCTTTGTTTTATATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1423 chr16 16128520 16128720 + -1.31538 NA intron (NM_001355731, intron 3 of 18) L1_Mus3|LINE|L1 18231 NM_146068 224008 Mm.244703 NM_146068 ENSMUSG00000041974 Spidr 2310008H04Rik|Kiaa0146 scaffolding protein involved in DNA repair protein-coding 0.010000 0.363184 36(TCTTTGTTTTATATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1650 chr17 79679434 79679634 + -1.31538 NA intron (NM_201361, intron 10 of 10) intron (NM_201361, intron 10 of 10) 35527 NM_001364889 13078 Mm.214016 NM_009994 ENSMUSG00000024087 Cyp1b1 CP1B|CYPIB1|P4501b1 cytochrome P450, family 1, subfamily b, polypeptide 1 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-330 chr10 6055963 6056163 + -1.31538 NA Intergenic Intergenic -133663 NM_019958 56533 Mm.44606 NM_019958 ENSMUSG00000019775 Rgs17 6430507P11Rik|Rgsz2 regulator of G-protein signaling 17 protein-coding 0.005000 0.358209 63(ATATTATGTTGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1116 chr14 56488821 56489021 + -1.31538 NA intron (NM_001033043, intron 25 of 36) intron (NM_001033043, intron 25 of 36) 82925 NM_001014996 219103 Mm.212525 NM_001014996 ENSMUSG00000064128 Cenpj 4932437H03Rik|CPAP|Gm81|LAP|LIP1|Sas4 centromere protein J protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-505 chr10 104730632 104730832 + -1.31538 NA Intergenic L1M2|LINE|L1 443463 NR_105838 102465222 NR_105838 ENSMUSG00000099264 Mir6411 Gm27767|mmu-mir-6411 microRNA 6411 ncRNA 0.000000 0.288557 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3297 chr8 24514109 24514309 + -1.31538 NA Intergenic L1MA4|LINE|L1 62124 NM_145949 209176 Mm.219580 NM_145949 ENSMUSG00000031549 Ido2 AI265623|C230043N17Rik|Ido-2|Indol1 indoleamine 2,3-dioxygenase 2 protein-coding 0.020000 0.353234 73(AATGAATATACATA,+,0.00),73(AATGAATATACATA,-,0.00) 39(TCTTTCATATGTAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1023 chr13 103102654 103102854 + -1.31538 NA intron (NM_175171, intron 3 of 28) intron (NM_175171, intron 3 of 28) 231738 NM_175171 328329 Mm.202606 NM_175171 ENSMUSG00000034751 Mast4 4930420O11Rik|AI642422|mKIAA0303 microtubule associated serine/threonine kinase family member 4 protein-coding 0.020000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2905 chr5 143680094 143680294 + -1.31544 NA intron (NM_001163548, intron 1 of 12) intron (NM_001163548, intron 1 of 12) 28953 NM_001163548 19159 Mm.281003 NM_011182 ENSMUSG00000018001 Cyth3 AI648983|ARNO3|CLM3|Grp1|Pscd3 cytohesin 3 protein-coding 0.020000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1256 chr15 14300237 14300437 + -1.31647 NA Intergenic Intergenic -1126662 NM_007666 12563 Mm.57048 NM_007666 ENSMUSG00000039385 Cdh6 cad6 cadherin 6 protein-coding 0.010000 0.358209 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-308 chr2 20352836 20353036 + -1.31647 NA intron (NM_001081006, intron 2 of 21) intron (NM_001081006, intron 2 of 21) 63023 NM_001081006 208618 Mm.237935 NM_029895 ENSMUSG00000036617 Etl4 6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt enhancer trap locus 4 protein-coding 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1957 chr2 20352824 20353024 + -1.31647 NA intron (NM_001081006, intron 2 of 21) intron (NM_001081006, intron 2 of 21) 63011 NM_001081006 208618 Mm.237935 NM_029895 ENSMUSG00000036617 Etl4 6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt enhancer trap locus 4 protein-coding 0.000000 0.353234 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-393 chr4 14769185 14769385 + -1.31647 NA intron (NM_028499, intron 4 of 7) intron (NM_028499, intron 4 of 7) 26767 NM_028499 73314 Mm.52613 NM_028499 ENSMUSG00000023151 Lrrc69 1700034K16Rik leucine rich repeat containing 69 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2519 chr4 14769306 14769506 + -1.31880 NA intron (NM_028499, intron 4 of 7) intron (NM_028499, intron 4 of 7) 26646 NM_028499 73314 Mm.52613 NM_028499 ENSMUSG00000023151 Lrrc69 1700034K16Rik leucine rich repeat containing 69 protein-coding 0.000000 0.333333 54(CATTCATAATGCAGG,+,0.00),54(CATTCATAATGCAGG,-,0.00) 6(ATTACCAAGACAAATG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-493 chr7 57845242 57845442 + -1.31880 NA Intergenic Intergenic 254169 NM_008071 14402 Mm.8004 NM_008071 ENSMUSG00000033676 Gabrb3 A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3 gamma-aminobutyric acid (GABA) A receptor, subunit beta 3 protein-coding 0.005000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3121 chr7 57845241 57845441 + -1.31880 NA Intergenic Intergenic 254168 NM_008071 14402 Mm.8004 NM_008071 ENSMUSG00000033676 Gabrb3 A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3 gamma-aminobutyric acid (GABA) A receptor, subunit beta 3 protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2591 chr4 64324503 64324703 + -1.32163 NA Intergenic Intergenic -48000 NR_151546 102633436 Mm.411637 NR_151546 Gm11217 - predicted gene 11217 ncRNA 0.000000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-56 chr10 45251724 45251924 + -1.32163 NA Intergenic RLTR25A|LTR|ERVK -37481 NM_024286 78977 Mm.24748 NM_024286 ENSMUSG00000019848 Popdc3 AA682104|Pop3 popeye domain containing 3 protein-coding 0.000000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-94 chr11 35358062 35358262 + -1.32163 NA intron (NM_011412, intron 4 of 35) L1MB7|LINE|L1 236706 NM_011412 20564 Mm.478604 NM_011412 ENSMUSG00000056427 Slit3 Slil2|Slit1|b2b2362.1Clo slit guidance ligand 3 protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-402 chr10 45251674 45251874 + -1.32163 NA Intergenic RLTR25A|LTR|ERVK -37531 NM_024286 78977 Mm.24748 NM_024286 ENSMUSG00000019848 Popdc3 AA682104|Pop3 popeye domain containing 3 protein-coding 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-398 chr10 37351395 37351595 + -1.32163 NA Intergenic L1M5|LINE|L1 -212569 NM_008538 17118 Mm.30059 NM_008538 ENSMUSG00000069662 Marcks Macs|PKCSL myristoylated alanine rich protein kinase C substrate protein-coding 0.010000 0.353234 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-48 chr10 27574115 27574315 + -1.32163 NA intron (NM_008481, intron 1 of 63) intron (NM_008481, intron 1 of 63) 42727 NM_008481 16773 Mm.256087 NM_008481 ENSMUSG00000019899 Lama2 5830440B04|dy|mKIAA4087|mer|merosin laminin, alpha 2 protein-coding 0.005000 0.258706 19(CCTATATTATTCATG,+,0.00) -67(CTATGAATGAGAAACA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-296 chr19 43560774 43560974 + -1.32194 NA Intergenic Intergenic -36269 NM_010324 14718 Mm.19039 NM_010324 ENSMUSG00000025190 Got1 AI789014|Got-1|cAspAT|cCAT glutamic-oxaloacetic transaminase 1, soluble protein-coding 0.000000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-133 chr13 19542867 19543067 + -1.32194 NA Intergenic Intergenic -38600 NR_131037 319466 NR_131037 ENSMUSG00000114189 9330199G10Rik - RIKEN cDNA 9330199G10 gene ncRNA 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-914 chr13 19542826 19543026 + -1.32194 NA Intergenic Intergenic -38559 NR_131037 319466 NR_131037 ENSMUSG00000114189 9330199G10Rik - RIKEN cDNA 9330199G10 gene ncRNA 0.005000 0.378109 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-151 chr13 91936170 91936370 + -1.32194 NA intron (NM_009027, intron 14 of 23) intron (NM_009027, intron 14 of 23) -59385 NM_198415 76722 Mm.316438 NM_198415 ENSMUSG00000021622 Ckmt2 2300008A19Rik|ScCKmit creatine kinase, mitochondrial 2 protein-coding 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3446 chr8 113791963 113792163 + -1.32194 NA intron (NM_172466, intron 3 of 22) MamSINE1|SINE|tRNA 56776 NM_172466 208936 Mm.167471 NM_172466 ENSMUSG00000053399 Adamts18 9630038L21|ADAMTS21|E130314N14Rik a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 18 protein-coding 0.025000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1896 chr19 43560772 43560972 + -1.32194 NA Intergenic Intergenic -36267 NM_010324 14718 Mm.19039 NM_010324 ENSMUSG00000025190 Got1 AI789014|Got-1|cAspAT|cCAT glutamic-oxaloacetic transaminase 1, soluble protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-323 chr1 194930993 194931193 + -1.32234 NA Intergenic Intergenic -7728 NM_133654 12490 Mm.29798 NM_133654 ENSMUSG00000016494 Cd34 AU040960 CD34 antigen protein-coding 0.000000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-222 chr16 37671318 37671518 + -1.32234 NA Intergenic L1MA4|LINE|L1 -17050 NM_026610 68194 Mm.379154 NM_026610 ENSMUSG00000022820 Ndufb4 0610006N12Rik|1300010H20Rik NADH:ubiquinone oxidoreductase subunit B4 protein-coding 0.015000 0.338308 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-288 chr19 12567954 12568154 + -1.32250 NA Intergenic Intergenic -5456 NM_001346545 107373 Mm.1643 NM_026640 ENSMUSG00000024691 Fam111a 4632417K18Rik|AW413625 family with sequence similarity 111, member A protein-coding 0.005000 0.353234 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-284 chr18 71509887 71510087 + -1.32263 NA intron (NM_007831, intron 12 of 28) intron (NM_007831, intron 12 of 28) 841082 NM_007831 13176 Mm.167882 NM_007831 ENSMUSG00000060534 Dcc C030036D22Rik|Igdcc1 deleted in colorectal carcinoma protein-coding 0.005000 0.308458 33(ATAAAAATAACAATTC,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-314 chr2 53605989 53606189 + -1.32327 NA Intergenic Intergenic 414005 NM_022989 65103 Mm.37623 NM_022989 ENSMUSG00000026960 Arl6ip6 2310057C01Rik|2610529A11Rik|Aip-6 ADP-ribosylation factor-like 6 interacting protein 6 protein-coding 0.010000 0.388060 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-155 chr13 109639642 109639842 + -1.32327 NA intron (NM_011056, intron 3 of 16) intron (NM_011056, intron 3 of 16) -264067 NR_035442 100316683 NR_035442 ENSMUSG00000084651 Mir1904 Mirn1904|mmu-mir-1904 microRNA 1904 ncRNA 0.005000 0.368159 -33(TTTTGCATAATAGTGA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-329 chr2 113758583 113758783 + -1.32493 NA promoter-TSS (NM_011824) promoter-TSS (NM_011824) -35 NM_011824 23892 Mm.166318 NM_011824 ENSMUSG00000074934 Grem1 Cktsf1b1|Drm|Grem|ld gremlin 1, DAN family BMP antagonist protein-coding 0.115000 0.681592 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2491 chr3 151533563 151533763 + -1.32493 NA intron (NM_133222, intron 13 of 15) ID_B1|SINE|B4 95781 NM_133222 170757 Mm.317261 NM_133222 ENSMUSG00000039167 Adgrl4 1110033N21Rik|ETL1|Eltd1|Etl adhesion G protein-coupled receptor L4 protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3304 chr8 29208018 29208218 + -1.32499 NA intron (NM_153135, intron 1 of 17) intron (NM_153135, intron 1 of 17) 11518 NM_153135 210801 Mm.248433 NM_153135 ENSMUSG00000063626 Unc5d D930029E11Rik|Unc5h4|mKIAA1777 unc-5 netrin receptor D protein-coding 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2452 chr3 136168120 136168320 + -1.32499 NA intron (NM_001033350, intron 7 of 16) intron (NM_001033350, intron 7 of 16) 157846 NM_001033350 242248 Mm.30832 NM_001033350 ENSMUSG00000037922 Bank1 A530094C12Rik|AI451642|AVIEF|BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 0.015000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2094 chr2 110977670 110977870 + -1.32499 NA Intergenic Intergenic -27526 NM_001355246 228432 Mm.483325 NM_001081556 ENSMUSG00000074968 Ano3 AI838058|B230324K02Rik|Tmem16c anoctamin 3 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3057 chr6 115453678 115453878 + -1.32499 NA intron (NM_001308352, intron 5 of 7) intron (NM_001308352, intron 5 of 7) 31712 NM_011146 19016 Mm.3020 NM_011146 ENSMUSG00000000440 Pparg Nr1c3|PPAR-gamma|PPAR-gamma2|PPARgamma|PPARgamma2 peroxisome proliferator activated receptor gamma protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1581 chr17 12616958 12617158 + -1.32499 NA intron (NM_013667, intron 9 of 10) intron (NM_013667, intron 9 of 10) 32869 NM_001355767 20518 Mm.17322 NM_013667 ENSMUSG00000040966 Slc22a2 Oct2|Orct2 solute carrier family 22 (organic cation transporter), member 2 protein-coding 0.000000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3235 chr7 130202432 130202632 + -1.32499 NA intron (NM_201601, intron 4 of 15) L1MB1|LINE|L1 64276 NM_010207 14183 Mm.16340 NM_010207 ENSMUSG00000030849 Fgfr2 AU043015|AW556123|Bek|Fgfr-2|Fgfr-7|Fgfr7|KGFR|KGFRTr|svs fibroblast growth factor receptor 2 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2111 chr2 124235754 124235954 + -1.32499 NA intron (NM_001290997, intron 2 of 20) intron (NM_001290997, intron 2 of 20) -13496 NR_040612 75946 Mm.415059 NR_040612 ENSMUSG00000086954 4930583P06Rik - RIKEN cDNA 4930583P06 gene ncRNA 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-959 chr13 49044588 49044788 + -1.32499 NA intron (NM_029361, intron 24 of 27) L1MEd|LINE|L1 76576 NR_015601 68128 Mm.426304 NR_015601 Fam120aos C030044B11Rik family with sequence similarity 120A, opposite strand ncRNA 0.015000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1997 chr2 48555883 48556083 + -1.32499 NA Intergenic Tigger17a|DNA|TcMar-Tigger -258126 NM_007396 11480 Mm.314338 NM_007396 ENSMUSG00000052155 Acvr2a ActrIIa|Acvr2|TactrII activin receptor IIA protein-coding 0.015000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1770 chr18 54864485 54864685 + -1.32499 NA Intergenic Intergenic 125595 NM_175751 269023 Mm.192984 NM_175751 ENSMUSG00000052713 Zfp608 4932417D18Rik|D430007A19Rik|Znf608 zinc finger protein 608 protein-coding 0.010000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-125 chr1 71800685 71800885 + -1.32499 NA Intergenic Intergenic -87327 NR_027658 667931 Mm.214128 NR_027658 ENSMUSG00000099707 Gm8883 EG667931|Gm554 predicted gene 8883 ncRNA 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1020 chr13 99551898 99552098 + -1.32499 NA Intergenic RLTR25B|LTR|ERVK -35396 NM_008634 17755 Mm.4173 NM_008634 ENSMUSG00000052727 Map1b A230055D22|AI843217|LC1|MAP5|Mtap-5|Mtap1b|Mtap5 microtubule-associated protein 1B protein-coding 0.015000 0.412935 -42(ATTTACATATCAATTC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2868 chr5 112572209 112572409 + -1.32499 NA intron (NM_001253917, intron 1 of 15) ORR1A2|LTR|ERVL-MaLR 4889 NM_019982 56747 Mm.143742 NM_019982 ENSMUSG00000058153 Sez6l AI843918|AIG1|AW539724|Acig1|BSRP-B|mKIAA0927 seizure related 6 homolog like protein-coding 0.005000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1894 chr19 41870010 41870210 + -1.32499 NA intron (NM_199447, intron 29 of 33) intron (NM_199447, intron 29 of 33) -21978 NM_177603 212398 Mm.222723 NM_177603 ENSMUSG00000047604 Frat2 - frequently rearranged in advanced T cell lymphomas 2 protein-coding 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-818 chr12 69351761 69351961 + -1.32499 NA intron (NM_025441, intron 6 of 32) B2_Mm2|SINE|B2 5315 NM_025441 66244 Mm.46705 NM_025441 ENSMUSG00000020982 Nemf 1500011I12Rik|4933405E14Rik|Sdccag1 nuclear export mediator factor protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3073 chr6 129595207 129595407 + -1.32499 NA intron (NM_010654, intron 3 of 5) intron (NM_010654, intron 3 of 5) 3497 NM_010654 16643 Mm.391515 NM_010654 ENSMUSG00000030165 Klrd1 CD94 killer cell lectin-like receptor, subfamily D, member 1 protein-coding 0.010000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1084 chr14 24232607 24232807 + -1.32499 NA intron (NM_001163513, intron 1 of 31) intron (NM_001163513, intron 1 of 31) 13213 NM_027726 71228 Mm.68971 NM_027726 ENSMUSG00000021782 Dlg5 4933429D20Rik|T25557|mKIAA0583 discs large MAGUK scaffold protein 5 protein-coding 0.010000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2690 chr4 127737023 127737223 + -1.32499 NA Intergenic Intergenic 233718 NM_001134733 635169 Mm.346755 NM_001134733 ENSMUSG00000028813 CK137956 - cDNA sequence CK137956 protein-coding 0.005000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1591 chr17 31762029 31762229 + -1.32499 NA Intergenic Intergenic 84198 NM_001278569 12954 Mm.1228 NM_013501 ENSMUSG00000024041 Cryaa Acry-1|Crya-1|Crya1|DAcry-1|lop18 crystallin, alpha A protein-coding 0.010000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1903 chr19 45637288 45637488 + -1.32499 NA intron (NM_013907, intron 2 of 8) intron (NM_013907, intron 2 of 8) 22805 NM_013907 30838 Mm.254739 NM_013907 ENSMUSG00000040913 Fbxw4 Dac|Fbw4|SHFM3|SHSF3|dactylin|dactylyn F-box and WD-40 domain protein 4 protein-coding 0.035000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3480 chr9 9036826 9037026 + -1.32499 NA intron (NM_027823, intron 7 of 22) intron (NM_027823, intron 7 of 22) 137093 NM_008829 18667 Mm.12798 NM_008829 ENSMUSG00000031870 Pgr 9930019P03Rik|BB114106|NR3C3|PR|PR-A|PR-B progesterone receptor protein-coding 0.000000 0.358209 -26(ATTTGTATTATAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1221 chr14 118514836 118515036 + -1.32499 NA intron (NM_001033336, intron 26 of 30) L1MB2|LINE|L1 77536 NR_105815 102465208 NR_105815 ENSMUSG00000098433 Mir6391 Gm27914|mmu-mir-6391 microRNA 6391 ncRNA 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1056 chr14 9179884 9180084 + -1.32499 NA Intergenic MTD|LTR|ERVL-MaLR 513594 NR_045968 74859 Mm.84041 NR_045968 ENSMUSG00000097898 4930455B14Rik 1700027C12Rik RIKEN cDNA 4930455B14 gene ncRNA 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3717 chrX 81496246 81496446 + -1.32499 NA Intergenic Intergenic -38224 NM_173435 245492 Mm.109633 NM_173435 ENSMUSG00000060673 4930595M18Rik - RIKEN cDNA 4930595M18 gene protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-772 chr12 39830706 39830906 + -1.32608 NA Intergenic Intergenic 206570 NM_007487 11861 Mm.12723 NM_007487 ENSMUSG00000047446 Arl4a AI467555|Arl4 ADP-ribosylation factor-like 4A protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1397 chr15 99432154 99432354 + -1.32608 NA intron (NM_001001884, intron 6 of 12) intron (NM_001001884, intron 6 of 12) 25494 NM_001001884 380969 Mm.22915 NM_001001884 ENSMUSG00000023009 Nckap5l C230021P08Rik|Cep169 NCK-associated protein 5-like protein-coding 0.020000 0.577114 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1276 chr15 25826274 25826474 + -1.32608 NA Intergenic Intergenic -16924 NM_001034851 66270 Mm.25311 NM_025459 ENSMUSG00000022270 Retreg1 1810015C04Rik|AU015349|Fam134b|Retreg1d reticulophagy regulator 1 protein-coding 0.030000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3407 chr8 91282877 91283077 + -1.32608 NA intron (NM_173431, intron 9 of 25) intron (NM_173431, intron 9 of 25) 30245 NM_173431 244585 Mm.324592 NM_173431 ENSMUSG00000033282 Rpgrip1l 1700047E16Rik|4931437C01|Ftm|Nphp8 Rpgrip1-like protein-coding 0.015000 0.447761 -53(CCATTTTCATTGTAAG,+,0.00),11(TTTTATTCATGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3209 chr7 113861974 113862174 + -1.32608 NA intron (NM_145584, intron 3 of 15) intron (NM_145584, intron 3 of 15) 96076 NM_145584 233744 Mm.334160 NM_145584 ENSMUSG00000038156 Spon1 AI666765|AW455831|BC020531|D330035F22Rik|FSP spondin 1, (f-spondin) extracellular matrix protein protein-coding 0.010000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2078 chr2 107113391 107113591 + -1.32608 NA Intergenic Intergenic -53840 NM_008045 14308 Mm.249525 NM_008045 ENSMUSG00000027120 Fshb FSH|FSH-B|FSH-beta|Fshbeta follicle stimulating hormone beta protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2006 chr2 51504484 51504684 + -1.32608 NA Intergenic Intergenic -66684 NR_130155 73375 Mm.396227 NR_130155 ENSMUSG00000086007 1700057H21Rik - RIKEN cDNA 1700057H21 gene ncRNA 0.000000 0.427861 -50(TCTTTGTCATTCACAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-628 chr11 57300445 57300645 + -1.32608 NA intron (NM_001252403, intron 13 of 15) intron (NM_001252403, intron 13 of 15) 218099 NM_001168668 67726 Mm.25632 NM_026342 ENSMUSG00000020523 Fam114a2 1810073G14Rik|9030624B09Rik family with sequence similarity 114, member A2 protein-coding 0.020000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1682 chr18 12889095 12889295 + -1.32608 NA intron (NM_207530, intron 13 of 27) intron (NM_207530, intron 13 of 27) -9216 NM_001252489 64291 Mm.259470 NM_020573 ENSMUSG00000044252 Osbpl1a G430090F17Rik|Gm753|ORP-1|Osbpl1b oxysterol binding protein-like 1A protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1535 chr16 83864627 83864827 + -1.32608 NA Intergenic Intergenic -506416 NR_040567 75247 Mm.417813 NR_040567 ENSMUSG00000116907 4930553E22Rik - RIKEN cDNA 4930553E22 gene ncRNA 0.010000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-259 chr1 151972414 151972614 + -1.32608 NA intron (NM_197990, intron 3 of 5) intron (NM_197990, intron 3 of 5) 117806 NM_197990 69399 Mm.278031 NM_197990 ENSMUSG00000032666 1700025G04Rik 2610510E02Rik|2900042O04Rik RIKEN cDNA 1700025G04 gene protein-coding 0.005000 0.383085 -90(TTTTTCTTATTTTTAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2090 chr2 110328942 110329142 + -1.32608 NA Intergenic Intergenic -23317 NM_130452 170442 Mm.27335 NM_130452 ENSMUSG00000041660 Bbox1 AI874739 butyrobetaine (gamma), 2-oxoglutarate dioxygenase 1 (gamma-butyrobetaine hydroxylase) protein-coding 0.000000 0.353234 59(TCCTTGTTTTTTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1415 chr16 12037642 12037842 + -1.32608 NA intron (NM_028277, intron 2 of 4) intron (NM_028277, intron 2 of 4) 53629 NM_001174086 72555 Mm.310139 NM_028277 ENSMUSG00000022494 Shisa9 2700045P11Rik|Ckamp44 shisa family member 9 protein-coding 0.000000 0.417910 -49(TATCCATATGGATG,-,0.00),50(TATGCATATGGATG,+,0.00),50(TATGCATATGGATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2842 chr5 91282965 91283165 + -1.32608 NA promoter-TSS (NR_040428) promoter-TSS (NR_040428) 11 NR_040428 100503265 Mm.125059 NR_040428 ENSMUSG00000107198 Gm19619 - predicted gene, 19619 ncRNA 0.005000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2010 chr2 53593910 53594110 + -1.32608 NA Intergenic L1_Mus3|LINE|L1 401926 NM_022989 65103 Mm.37623 NM_022989 ENSMUSG00000026960 Arl6ip6 2310057C01Rik|2610529A11Rik|Aip-6 ADP-ribosylation factor-like 6 interacting protein 6 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1130 chr14 65058880 65059080 + -1.32608 NA intron (NM_001360385, intron 4 of 5) intron (NM_001360385, intron 4 of 5) 39126 NM_018788 54616 Mm.103748 NM_018788 ENSMUSG00000021978 Extl3 2900009G18Rik|AU040105|Ext1l|mKIAA0519 exostoses (multiple)-like 3 protein-coding 0.025000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3052 chr6 112210657 112210857 + -1.32608 NA promoter-TSS (NR_027865) promoter-TSS (NR_027865) 49 NR_027865 67336 Mm.378014 NR_027865 ENSMUSG00000100219 1700054K19Rik - RIKEN cDNA 1700054K19 gene ncRNA 0.020000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3042 chr6 103885222 103885422 + -1.32608 NA Intergenic Intergenic 79362 NR_144494 100846987 NR_144494 Pou5f1-rs5 Gm21054|Oct4P5|Otf3-rs5|Otf3e POU domain, class 5, transcription factor 1, related sequence 5 pseudo 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-630 chr11 57820098 57820298 + -1.32608 NA Intergenic Intergenic 11949 NM_008213 15110 Mm.4746 NM_008213 ENSMUSG00000037335 Hand1 Ehand1|Hxt|Th1|Thing1|bHLHa27|eHAND heart and neural crest derivatives expressed 1 protein-coding 0.020000 0.557214 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-527 chr8 73894711 73894911 + -1.32740 NA Intergenic Intergenic -541271 NM_010687 16795 Mm.324371 NM_010687 ENSMUSG00000004383 Large1 BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd LARGE xylosyl- and glucuronyltransferase 1 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-592 chr11 35061322 35061522 + -1.32740 NA Intergenic L2a|LINE|L2 -60034 NM_011412 20564 Mm.478604 NM_011412 ENSMUSG00000056427 Slit3 Slil2|Slit1|b2b2362.1Clo slit guidance ligand 3 protein-coding 0.010000 0.368159 -6(AATGAATGATGGATG,+,0.00),-6(AATGAATGATGGATG,-,0.00) 10(ATTTACAGAAGAATCC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2851 chr5 97444648 97444848 + -1.32740 NA intron (NR_045981, intron 3 of 7) intron (NR_045981, intron 3 of 7) 12275 NM_010294 14626 Mm.61206 NM_010294 ENSMUSG00000050553 Gk2 GKTA|Gk-rs2 glycerol kinase 2 protein-coding 0.010000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-223 chr1 128390780 128390980 + -1.32740 NA intron (NM_177445, intron 5 of 15) intron (NM_177445, intron 5 of 15) 26536 NM_145507 226414 Mm.28693 NM_145507 ENSMUSG00000026356 Dars 5730439G15Rik aspartyl-tRNA synthetase protein-coding 0.000000 0.398010 65(TATGAAAATTTATG,-,0.00) 5(CCCTTGTCTTGAAAAC,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-114 chr12 40434262 40434462 + -1.32807 NA intron (NM_172575, intron 1 of 12) intron (NM_172575, intron 1 of 12) 11428 NM_178845 246196 Mm.26852 NM_172575 ENSMUSG00000055917 Zfp277 2410017E24Rik|NIRF4 zinc finger protein 277 protein-coding 0.010000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-773 chr12 40434283 40434483 + -1.32807 NA intron (NM_172575, intron 1 of 12) intron (NM_172575, intron 1 of 12) 11407 NM_178845 246196 Mm.26852 NM_172575 ENSMUSG00000055917 Zfp277 2410017E24Rik|NIRF4 zinc finger protein 277 protein-coding 0.010000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1109 chr14 46484673 46484873 + -1.32863 NA Intergenic Intergenic 91078 NR_046459 100873094 Mm.318596 NR_046459 ENSMUSG00000085123 Rubie Gm15219|Gm1584 RNA upstream of Bmp4 expressed in inner ear ncRNA 0.010000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2054 chr2 92774373 92774573 + -1.32863 NA Intergenic MIRb|SINE|MIR -140628 NM_030725 80976 Mm.33490 NM_030725 ENSMUSG00000027220 Syt13 5730409J20Rik|AI549909|mKIAA1427 synaptotagmin XIII protein-coding 0.005000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2288 chr3 63270783 63270983 + -1.32863 NA Intergenic Intergenic -24328 NM_001357335 17380 Mm.296022 NM_008604 ENSMUSG00000027820 Mme 6030454K05Rik|C85356|CALLA|CD10|NEP|SFE membrane metallo endopeptidase protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3126 chr7 65621258 65621458 + -1.32863 NA Intergenic Intergenic -23540 NM_172310 272396 Mm.35127 NM_172310 ENSMUSG00000030515 Tarsl2 A530046H20Rik threonyl-tRNA synthetase-like 2 protein-coding 0.030000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-45 chr1 32833651 32833851 + -1.32863 NA Intergenic L1MDa|LINE|L1 -286458 NM_001164286 408191 Mm.479439 NM_001164286 ENSMUSG00000091318 Gm5415 EG408191|Senp14 predicted gene 5415 protein-coding 0.000000 0.422886 -90(CTATTGTATTTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2453 chr3 136265175 136265375 + -1.32863 NA intron (NM_001310749, intron 1 of 15) Charlie1a|DNA|hAT-Charlie 60791 NM_001033350 242248 Mm.30832 NM_001033350 ENSMUSG00000037922 Bank1 A530094C12Rik|AI451642|AVIEF|BANK B cell scaffold protein with ankyrin repeats 1 protein-coding 0.010000 0.373134 43(ATTTCCTTGAGAAAGA,-,0.00),68(CATTTGTCATTTTAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-285 chr1 170403823 170404023 + -1.32863 NA intron (NR_154593, intron 2 of 9) intron (NR_154593, intron 2 of 9) 95104 NM_001039593 76925 Mm.33631 NM_001039593 ENSMUSG00000042800 Spata46 1700015E13Rik spermatogenesis associated 46 protein-coding 0.005000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1659 chr17 84829186 84829386 + -1.32863 NA Intergenic MT2A|LTR|ERVL -38500 NM_028233 72416 Mm.217027 NM_028233 ENSMUSG00000024120 Lrpprc 3110001K13Rik|C76645|Gp130|Lrp130|Lsfc leucine-rich PPR-motif containing protein-coding 0.010000 0.323383 -9(ATTTAATTAAGAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1583 chr17 15477371 15477571 + -1.32863 NA intron (NM_011185, intron 4 of 5) intron (NM_011185, intron 4 of 5) 20805 NM_011185 19170 Mm.32912 NM_011185 ENSMUSG00000014769 Psmb1 AA409053|C81484|Lmpc5 proteasome (prosome, macropain) subunit, beta type 1 protein-coding 0.000000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1297 chr15 38732395 38732595 + -1.32863 NA Intergenic Intergenic -3979 NR_131206 105463124 Mm.432448 NR_131206 ENSMUSG00000115620 Gm45924 Borg predicted gene, 45924 ncRNA 0.000000 0.582090 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1679 chr18 11065547 11065747 + -1.32902 NA intron (NM_010258, intron 6 of 6) MER5A|DNA|hAT-Charlie -13080 NR_105023 68434 Mm.57626 NR_105022 ENSMUSG00000097222 1010001N08Rik Gata6as RIKEN cDNA 1010001N08 gene ncRNA 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1781 chr18 59307120 59307320 + -1.32902 NA intron (NM_001081328, intron 2 of 2) intron (NM_001081328, intron 2 of 2) 131880 NM_001081328 78923 Mm.84007 NM_001081328 ENSMUSG00000058152 Chsy3 4833446K15Rik|AI662215 chondroitin sulfate synthase 3 protein-coding 0.000000 0.313433 29(ATTTAAATAAAACAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-558 chr11 17025761 17025961 + -1.32902 NA Intergenic Intergenic -17143 NM_019549 56193 Mm.98232 NM_019549 ENSMUSG00000020120 Plek 2010300B13Rik pleckstrin protein-coding 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1769 chr18 54551372 54551572 + -1.32902 NA Intergenic Intergenic -60272 NR_045400 328957 Mm.402781 NR_045400 ENSMUSG00000118154 9330117O12Rik 9330117O12 RIKEN cDNA 9330117O12 gene ncRNA 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-386 chr10 33158293 33158493 + -1.32902 NA intron (NM_001364697, intron 4 of 8) intron (NM_001364697, intron 4 of 8) 74887 NM_001364697 76757 Mm.338508 NM_029726 ENSMUSG00000019787 Trdn 2310045H21Rik|EG432451|TDN triadin protein-coding 0.000000 0.303483 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3504 chr9 27632285 27632485 + -1.32902 NA Intergenic Intergenic 235173 NM_001305058 75469 Mm.45824 NM_029299 ENSMUSG00000031991 Spata19 1700001L23Rik|AV047838|spergen-1 spermatogenesis associated 19 protein-coding 0.005000 0.343284 -16(TATACATATGCACA,+,0.00),-16(TATACATATGCACA,-,0.00),25(TATCAATATGTATG,+,0.00),25(TATCAATATGTATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1787 chr18 65742440 65742640 + -1.32902 NA intron (NM_177028, intron 11 of 14) intron (NM_177028, intron 11 of 14) 44272 NM_177028 319888 Mm.183576 NM_177028 ENSMUSG00000046610 Oacyl 5330437I02Rik|Acyl3 O-acyltransferase like protein-coding 0.020000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-212 chr1 123025352 123025552 + -1.32902 NA Intergenic MYSERV6-int|LTR|ERVK 820307 NR_151524 102638832 Mm.112794 NR_151524 ENSMUSG00000099960 Gm28590 - predicted gene 28590 ncRNA 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-153 chr1 83644986 83645186 + -1.32902 NA Intergenic Lx5c|LINE|L1 -236886 NM_001356547 77629 Mm.154303 NM_172430 ENSMUSG00000026163 Sphkap 4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678 SPHK1 interactor, AKAP domain containing protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-71 chr1 49838361 49838561 + -1.32902 NA Intergenic Intergenic 593845 NR_151585 442837 Mm.337149 NM_001002792 ENSMUSG00000051616 C230029F24Rik - RIKEN cDNA C230029F24 gene ncRNA 0.000000 0.328358 -21(TTATTTTCTTGGAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3731 chrX 102292365 102292565 + -1.32902 NA intron (NM_027382, intron 10 of 10) intron (NM_027382, intron 10 of 10) 39814 NR_040285 434825 Mm.447373 NR_040285 ENSMUSG00000085568 Gm14858 - predicted gene 14858 ncRNA 0.010000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2588 chr4 58894758 58894958 + -1.32902 NA intron (NM_172381, intron 1 of 48) (CATATA)n|Simple_repeat|Simple_repeat 17072 NM_001355697 230249 Mm.234801 NM_172381 ENSMUSG00000050812 Ecpas AI314180|AW558785|BB181316|mKIAA0368 Ecm29 proteasome adaptor and scaffold protein-coding 0.005000 0.318408 -27(TATACATATACATA,-,0.00),-21(TATACATATACATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3530 chr9 46175482 46175682 + -1.32902 NA intron (NM_027498, intron 4 of 24) ORR1B2|LTR|ERVL-MaLR -53048 NM_009692 11806 Mm.26743 NM_009692 ENSMUSG00000032083 Apoa1 Alp-1|Apoa-1|Brp-14|Ltw-1|Lvtw-1|Sep-1|Sep-2|Sep2|apo-AI|apoA-I apolipoprotein A-I protein-coding 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-694 chr11 99869193 99869393 + -1.33271 NA Intergenic Intergenic -4096 NM_015741 16705 Mm.422800 NM_015741 ENSMUSG00000070335 Krtap9-1 - keratin associated protein 9-1 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2580 chr4 53206770 53206970 + -1.33271 NA Intergenic L3|LINE|CR1 -39326 NR_040665 78180 Mm.243847 NR_040665 ENSMUSG00000086947 4930522O17Rik - RIKEN cDNA 4930522O17 gene ncRNA 0.020000 0.383085 30(TTATTTTTATTTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-283 chr1 170393157 170393357 + -1.33271 NA intron (NR_154593, intron 2 of 9) intron (NR_154593, intron 2 of 9) 84438 NM_001039593 76925 Mm.33631 NM_001039593 ENSMUSG00000042800 Spata46 1700015E13Rik spermatogenesis associated 46 protein-coding 0.010000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2744 chr5 22384634 22384834 + -1.33271 NA Intergenic Intergenic -40029 NM_011261 19699 Mm.425236 NM_011261 ENSMUSG00000042453 Reln reeler|rl reelin protein-coding 0.005000 0.432836 -43(CCACTATCTTGTAGAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-176 chr14 76324533 76324733 + -1.33271 NA Intergenic Intergenic 73171 NR_152108 72893 Mm.233565 NR_152108 2900040C04Rik - RIKEN cDNA 2900040C04 gene ncRNA 0.005000 0.388060 -4(CATGCATATGCAAG,+,0.00),-4(CATGCATATGCAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3152 chr7 77887682 77887882 + -1.33271 NA Intergenic ID_B1|SINE|B4 690056 NM_008746 18213 Mm.33496 NM_008746 ENSMUSG00000059146 Ntrk3 AW125844|Ntrk3_tv3|TrkC neurotrophic tyrosine kinase, receptor, type 3 protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-48 chr1 33224122 33224322 + -1.33271 NA Intergenic Intergenic 445572 NM_008922 19076 Mm.27705 NM_008922 ENSMUSG00000026134 Prim2 AI323589 DNA primase, p58 subunit protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-35 chr1 26295020 26295220 + -1.33271 NA Intergenic ORR1C1|LTR|ERVL-MaLR 392340 NM_001033764 210940 Mm.297614 NM_001033764 ENSMUSG00000073722 4931408C20Rik - RIKEN cDNA 4931408C20 gene protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2843 chr5 92816856 92817056 + -1.33271 NA intron (NM_001077595, intron 1 of 9) intron (NM_001077595, intron 1 of 9) 7574 NM_001077595 27428 Mm.46014 NM_015756 ENSMUSG00000029381 Shroom3 AL022960|D5Ertd287e|Shrm|Shrm3 shroom family member 3 protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1155 chr14 76324544 76324744 + -1.33271 NA Intergenic Intergenic 73182 NR_152108 72893 Mm.233565 NR_152108 2900040C04Rik - RIKEN cDNA 2900040C04 gene ncRNA 0.005000 0.402985 -15(CATGCATATGCAAG,+,0.00),-15(CATGCATATGCAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1760 chr18 49440746 49440946 + -1.33277 NA Intergenic Intergenic -82443 NR_033785 67321 Mm.245802 NR_033785 ENSMUSG00000100297 1700044K03Rik - RIKEN cDNA 1700044K03 gene ncRNA 0.000000 0.393035 -45(ATCAGCATCAAAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3554 chr9 62915769 62915969 + -1.33277 NA intron (NM_019663, intron 6 of 13) intron (NM_019663, intron 6 of 13) -53845 NR_003965 677044 Mm.422004 NR_003965 ENSMUSG00000074250 Gm10653 - ribsomal protein S2 pseudogene pseudo 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-282 chr1 169903279 169903479 + -1.33277 NA Intergenic Intergenic -25560 NM_001033185 78465 Mm.291078 NM_001033185 ENSMUSG00000070532 Ccdc190 1700084C01Rik coiled-coil domain containing 190 protein-coding 0.005000 0.328358 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-277 chr18 49440749 49440949 + -1.33277 NA Intergenic Intergenic -82440 NR_033785 67321 Mm.245802 NR_033785 ENSMUSG00000100297 1700044K03Rik - RIKEN cDNA 1700044K03 gene ncRNA 0.000000 0.393035 -48(ATCAGCATCAAAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-577 chr11 25050411 25050611 + -1.33277 NA Intergenic Intergenic -275596 NR_045853 71234 Mm.158627 NR_045853 ENSMUSG00000033015 4933427E13Rik - RIKEN cDNA 4933427E13 gene ncRNA 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1909 chr19 50583418 50583618 + -1.33277 NA intron (NM_001360457, intron 1 of 26) intron (NM_001360457, intron 1 of 26) 95128 NM_001290356 58178 Mm.313672 NM_021377 ENSMUSG00000043531 Sorcs1 Sorcs|mSorCS sortilin-related VPS10 domain containing receptor 1 protein-coding 0.005000 0.398010 -64(TTATTATGATGGAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1546 chr16 87923917 87924117 + -1.33669 NA intron (NM_146072, intron 13 of 16) intron (NM_146072, intron 13 of 16) 14746 NR_155304 105246151 Mm.449986 NR_155304 4930590A17Rik - RIKEN cDNA 4930590A17 gene ncRNA 0.005000 0.283582 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-291 chr19 27489080 27489280 + -1.33776 NA Intergenic Intergenic 59143 NR_027987 107372 Mm.17942 NM_175354 C030016D13Rik AW413347 RIKEN cDNA C030016D13 gene ncRNA 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3634 chr9 102972806 102973006 + -1.34062 NA Intergenic Charlie13a|DNA|hAT-Charlie -35581 NR_157194 24059 Mm.207106 NM_033314 ENSMUSG00000032548 Slco2a1 2310021C19Rik|Pgt|Slc21a2 solute carrier organic anion transporter family, member 2a1 protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1837 chr19 12567932 12568132 + -1.34062 NA Intergenic Intergenic -5478 NM_001346545 107373 Mm.1643 NM_026640 ENSMUSG00000024691 Fam111a 4632417K18Rik|AW413625 family with sequence similarity 111, member A protein-coding 0.005000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1699 chr18 20375347 20375547 + -1.34062 NA Intergenic Intergenic -1282 NM_181682 225256 Mm.269128 NM_181682 ENSMUSG00000061928 Dsg1b Dsg5|dsg1-beta desmoglein 1 beta protein-coding 0.015000 0.452736 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-538 chr8 109445827 109446027 + -1.34062 NA Intergenic Intergenic -48100 NM_019938 56523 Mm.42166 NM_019938 ENSMUSG00000031727 Pmfbp1 1700016D22Rik|F77|Stap polyamine modulated factor 1 binding protein 1 protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1994 chr2 45903737 45903937 + -1.34071 NA Intergenic Intergenic 207232 NR_040497 69405 Mm.396184 NR_040497 ENSMUSG00000086202 1700019E08Rik - RIKEN cDNA 1700019E08 gene ncRNA 0.005000 0.407960 20(TAGTTTTGATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-351 chr10 18003774 18003974 + -1.34071 NA Intergenic MLTR25A|LTR|ERVK 19216 NM_001359560 73112 Mm.276041 NM_028440 ENSMUSG00000078453 Abracl 1700028I04Rik|3110003A17Rik ABRA C-terminal like protein-coding 0.000000 0.358209 -56(ATATGCAAAATAAAAG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-268 chr18 30825122 30825322 + -1.34071 NA Intergenic Intergenic 491906 NM_009065 19762 Mm.5163 NM_009065 ENSMUSG00000057455 Rit2 RIBA|Rin|Roc2 Ras-like without CAAX 2 protein-coding 0.000000 0.373134 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-129 chr13 11093154 11093354 + -1.34071 NA Intergenic Intergenic -428798 NR_027813 664793 Mm.410565 NR_027813 ENSMUSG00000113593 Zp4-ps EG664793|Zp4|Zpb zona pellucida glycoprotein 4, pseudogene pseudo 0.015000 0.333333 -49(TCATTTATTTGCAAAT,+,0.00),2(CTATAAATGAGAAAAG,-,0.00),52(TTTTTTTTTTTTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2071 chr2 103606606 103606806 + -1.34071 NA intron (NM_178890, intron 1 of 16) intron (NM_178890, intron 1 of 16) 40396 NM_178890 99382 Mm.35850 NM_178890 ENSMUSG00000032724 Abtb2 AW539457|BPOZ-2 ankyrin repeat and BTB (POZ) domain containing 2 protein-coding 0.005000 0.467662 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-425 chr5 18943500 18943700 + -1.34071 NA Intergenic MER54B|LTR|ERVL 282955 NR_102341 70832 Mm.398993 NR_102341 ENSMUSG00000097626 4921504A21Rik - RIKEN cDNA 4921504A21 gene ncRNA 0.000000 0.338308 27(ATTCTATTATTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-891 chr13 11093121 11093321 + -1.34071 NA Intergenic Intergenic -428831 NR_027813 664793 Mm.410565 NR_027813 ENSMUSG00000113593 Zp4-ps EG664793|Zp4|Zpb zona pellucida glycoprotein 4, pseudogene pseudo 0.010000 0.363184 -16(TCATTTATTTGCAAAT,+,0.00),35(CTATAAATGAGAAAAG,-,0.00),85(TTTTTTTTTTTTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1714 chr18 30825159 30825359 + -1.34071 NA Intergenic Intergenic 491869 NM_009065 19762 Mm.5163 NM_009065 ENSMUSG00000057455 Rit2 RIBA|Rin|Roc2 Ras-like without CAAX 2 protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3187 chr7 97183653 97183853 + -1.34243 NA intron (NM_001162477, intron 1 of 9) intron (NM_001162477, intron 1 of 9) 102002 NM_010248 14389 Mm.42033 NM_010248 ENSMUSG00000004508 Gab2 AI463667|D130058I17Rik|p97 growth factor receptor bound protein 2-associated protein 2 protein-coding 0.010000 0.472637 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-506 chr7 97183660 97183860 + -1.34243 NA intron (NM_001162477, intron 1 of 9) intron (NM_001162477, intron 1 of 9) 102009 NM_010248 14389 Mm.42033 NM_010248 ENSMUSG00000004508 Gab2 AI463667|D130058I17Rik|p97 growth factor receptor bound protein 2-associated protein 2 protein-coding 0.010000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1320 chr15 53171240 53171440 + -1.34243 NA intron (NM_010162, intron 1 of 10) intron (NM_010162, intron 1 of 10) 174843 NM_010162 14042 Mm.309395 NM_010162 ENSMUSG00000061731 Ext1 AA409028 exostoses (multiple) 1 protein-coding 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1034 chr13 109639612 109639812 + -1.34310 NA intron (NM_011056, intron 3 of 16) intron (NM_011056, intron 3 of 16) -264097 NR_035442 100316683 NR_035442 ENSMUSG00000084651 Mir1904 Mirn1904|mmu-mir-1904 microRNA 1904 ncRNA 0.005000 0.368159 -3(TTTTGCATAATAGTGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2963 chr6 40589938 40590138 + -1.34468 NA Intergenic Intergenic -4233 NM_021364 23845 Mm.103765 NM_021364 ENSMUSG00000029915 Clec5a Clecsf5|Ly100|MDL-1|Mdl1 C-type lectin domain family 5, member a protein-coding 0.010000 0.308458 -13(TTTTTTGTATGCTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-720 chr12 5108667 5108867 + -1.34681 NA intron (NM_001164493, intron 5 of 13) intron (NM_001164493, intron 5 of 13) 191414 NM_001362349 320817 Mm.210966 NM_001099628 ENSMUSG00000052812 Atad2b 1110014E10Rik|BC032887|C79189|D530031C13Rik ATPase family, AAA domain containing 2B protein-coding 0.015000 0.517413 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-573 chr9 117156466 117156666 + -1.35093 NA intron (NM_001172123, intron 1 of 14) intron (NM_001172123, intron 1 of 14) 95917 NM_001172126 207181 Mm.326411 NM_178660 ENSMUSG00000039607 Rbms3 6720477E09Rik|8430436O14Rik RNA binding motif, single stranded interacting protein protein-coding 0.020000 0.502488 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-440 chr5 72464958 72465158 + -1.35163 NA intron (NM_016869, intron 2 of 21) RMER15-int|LTR|ERVL 39150 NM_016869 53419 Mm.332425 NM_016869 ENSMUSG00000005220 Corin AV273130|Lrp4 corin, serine peptidase protein-coding 0.005000 0.447761 21(TTAAGCATGAGAAAGG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-492 chr7 51693108 51693308 + -1.35229 NA Intergenic LTR52|LTR|ERVL 68571 NM_001355150 140919 Mm.256618 NM_080853 ENSMUSG00000030500 Slc17a6 2900073D12Rik|DNPI|VGLUT2 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 protein-coding 0.005000 0.373134 2(GTTTTATTTTGTAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1475 chr16 52042443 52042643 + -1.35229 NA intron (NM_001033238, intron 2 of 17) intron (NM_001033238, intron 2 of 17) 10994 NM_001033238 208650 Mm.328206 NM_001033238 ENSMUSG00000022637 Cblb AI429560|AI851073|Cbl-b Casitas B-lineage lymphoma b protein-coding 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-581 chr11 26197893 26198093 + -1.35269 NA intron (NR_027973, intron 1 of 5) (TG)n|Simple_repeat|Simple_repeat -4247 NR_105791 102466154 NR_105791 ENSMUSG00000099015 Mir6372 Gm27358|mmu-mir-6372 microRNA 6372 ncRNA 0.010000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2484 chr3 149784219 149784419 + -1.35269 NA Intergenic Intergenic 509582 NR_040591 381482 Mm.393866 NR_040591 Gm1653 - predicted gene 1653 ncRNA 0.000000 0.373134 -16(ATGTGCATGACACATC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2776 chr5 49366521 49366721 + -1.35269 NA Intergenic MIRb|SINE|MIR -80962 NM_001199244 80334 Mm.160172 NM_030265 ENSMUSG00000029088 Kcnip4 AV032399|Calp|Calp250|KChIP4|KChIP4a Kv channel interacting protein 4 protein-coding 0.010000 0.373134 -9(TTATTACTATGTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3383 chr8 78197368 78197568 + -1.35269 NA Intergenic Intergenic -15874 NM_183096 73301 Mm.61243 NM_183096 ENSMUSG00000037101 Ttc29 1700031F13Rik tetratricopeptide repeat domain 29 protein-coding 0.020000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1926 chr19 60536904 60537104 + -1.35269 NA intron (NM_001172096, intron 5 of 7) intron (NM_001172096, intron 5 of 7) 44019 NM_001172097 78832 Mm.259026 NM_030197 ENSMUSG00000033417 Cacul1 2700078E11Rik|2810417M16Rik|9830127L17Rik|AI450346|D130033C15Rik CDK2 associated, cullin domain 1 protein-coding 0.005000 0.373134 -49(TATGCATATTTACA,+,0.00),-49(TATGCATATTTACA,-,0.00) -56(GTATTCCTATGCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2994 chr6 73326299 73326499 + -1.35269 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 77894 NM_019879 56451 Mm.29845 NM_019879 ENSMUSG00000052738 Suclg1 1500000I01Rik|Sucla1 succinate-CoA ligase, GDP-forming, alpha subunit protein-coding 0.015000 0.402985 20(TGTACATATTCATG,-,0.00) 42(ATTAACAAAAGAAGAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1674 chr18 6613896 6614096 + -1.35269 NA intron (NM_027598, intron 1 of 9) L1_Mus3|LINE|L1 10367 NM_027598 70901 Mm.158484 NM_027598 ENSMUSG00000039540 4921524L21Rik - RIKEN cDNA 4921524L21 gene protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-830 chr12 81236006 81236206 + -1.35269 NA intron (NR_152198, intron 1 of 1) intron (NR_152198, intron 1 of 1) 7822 NR_152198 100042143 Mm.149463 NR_152198 Gm3693 - predicted gene 3693 ncRNA 0.020000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-974 chr13 68737999 68738199 + -1.35269 NA intron (NM_153534, intron 5 of 24) intron (NM_153534, intron 5 of 24) 140660 NM_027035 69315 Mm.272795 NM_027035 ENSMUSG00000021534 1700001L19Rik - RIKEN cDNA 1700001L19 gene protein-coding 0.015000 0.487562 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-431 chr5 49366479 49366679 + -1.35269 NA Intergenic Intergenic -80920 NM_001199244 80334 Mm.160172 NM_030265 ENSMUSG00000029088 Kcnip4 AV032399|Calp|Calp250|KChIP4|KChIP4a Kv channel interacting protein 4 protein-coding 0.015000 0.388060 33(TTATTACTATGTTAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-475 chr6 73326276 73326476 + -1.35269 NA Intergenic Lx9|LINE|L1 77871 NM_019879 56451 Mm.29845 NM_019879 ENSMUSG00000052738 Suclg1 1500000I01Rik|Sucla1 succinate-CoA ligase, GDP-forming, alpha subunit protein-coding 0.020000 0.412935 43(TGTACATATTCATG,-,0.00) 65(ATTAACAAAAGAAGAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-271 chr1 160354221 160354421 + -1.35269 NA intron (NM_013862, intron 18 of 20) Lx9|LINE|L1 -2750 NM_001038621 29809 Mm.25833 NM_013862 ENSMUSG00000026721 Rabgap1l 5830411O09Rik|8430421H08Rik|9630005B12Rik|AW049894|HHL|Hh1|mKIAA0471 RAB GTPase activating protein 1-like protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2456 chr3 137103659 137103859 + -1.35269 NA Intergenic MER20B|DNA|hAT-Charlie -185858 NR_163863 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1664 chr17 88898979 88899179 + -1.35269 NA Intergenic Intergenic -107065 NM_013582 16867 Mm.1644 NM_013582 ENSMUSG00000024107 Lhcgr Gpcr19-rs1|LH-R|LH/CG-R|LSH-R|Lhr luteinizing hormone/choriogonadotropin receptor protein-coding 0.020000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2380 chr3 109911148 109911348 + -1.35310 NA intron (NM_030699, intron 3 of 7) Lx9|LINE|L1 232224 NM_133488 80883 Mm.39262 NM_030699 ENSMUSG00000059857 Ntng1 A930010C08Rik|AI853992|Lmnt1 netrin G1 protein-coding 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-490 chr10 99899360 99899560 + -1.35310 NA Intergenic Intergenic -116361 NM_001347156 17311 Mm.45124 NM_013598 ENSMUSG00000019966 Kitl Clo|Con|Gb|Kitlg|Mgf|SCF|SF|SLF|Sl|blz|contrasted kit ligand protein-coding 0.015000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2763 chr5 41266557 41266757 + -1.35310 NA Intergenic Intergenic 441034 NM_001310592 100972 Mm.41555 NM_027295 ENSMUSG00000029128 Rab28 2700023P08Rik|AW496496 RAB28, member RAS oncogene family protein-coding 0.005000 0.348259 66(CTTTGCAAGGAAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2405 chr3 120152781 120152981 + -1.35310 NA Intergenic Intergenic -369493 NM_019550 56195 Mm.29966 NM_019550 ENSMUSG00000028134 Ptbp2 Ptb2|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 0.005000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1303 chr15 44347266 44347466 + -1.35310 NA Intergenic RMER1B|Other|Other -80745 NM_175009 223527 Mm.291828 NM_175009 ENSMUSG00000022338 Eny2 1810057B09Rik|6720481I12|DC6|Ey2 ENY2 transcription and export complex 2 subunit protein-coding 0.010000 0.442786 -50(ATTTGCAAGTCAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1398 chr15 99614737 99614937 + -1.35310 NA Intergenic Intergenic 13637 NM_175087 11831 Mm.202309 NM_175087 ENSMUSG00000043144 Aqp6 AI790337 aquaporin 6 protein-coding 0.040000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-205 chr1 118334920 118335120 + -1.35310 NA Intergenic Intergenic 13177 NM_026472 67949 Mm.280311 NM_026472 ENSMUSG00000026377 Nifk AI852665|C130020J04Rik|Mki67ip nucleolar protein interacting with the FHA domain of MKI67 protein-coding 0.015000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1248 chr15 11104062 11104262 + -1.35310 NA intron (NM_175501, intron 2 of 23) intron (NM_175501, intron 2 of 23) 39389 NM_175501 239337 Mm.224825 NM_175501 ENSMUSG00000047497 Adamts12 ADAMTS-12|AI605170 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 12 protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2202 chr2 179681370 179681570 + -1.35310 NA intron (NM_001316723, intron 2 of 5) intron (NM_001316723, intron 2 of 5) 239039 NM_009867 12561 Mm.184711 NM_009867 ENSMUSG00000000305 Cdh4 AW120700|R-CAD|R-Cadh|Rcad cadherin 4 protein-coding 0.000000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2368 chr3 102788208 102788408 + -1.35310 NA Intergenic L1MB8|LINE|L1 -5594 NM_009432 22094 Mm.110730 NM_009432 ENSMUSG00000027857 Tshb - thyroid stimulating hormone, beta subunit protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1712 chr18 29091752 29091952 + -1.35310 NA Intergenic Intergenic 219636 NR_155537 102637039 Mm.50107 NR_155537 ENSMUSG00000117473 Gm33948 - predicted gene, 33948 ncRNA 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2544 chr4 31861306 31861506 + -1.35310 NA Intergenic L1MB3|LINE|L1 -102701 NM_009316 26409 Mm.258589 NM_009316 ENSMUSG00000028284 Map3k7 B430101B05|C87327|Tak1 mitogen-activated protein kinase kinase kinase 7 protein-coding 0.010000 0.427861 8(CAACTCTCATGCAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2461 chr3 139224424 139224624 + -1.35310 NA intron (NM_198659, intron 4 of 13) RMER13A1|LTR|ERVK 18631 NM_198659 381476 Mm.188334 NM_198659 ENSMUSG00000047940 Stpg2 B930007M17Rik|Gm1017 sperm tail PG rich repeat containing 2 protein-coding 0.015000 0.552239 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-97 chr1 62317056 62317256 + -1.35310 NA intron (NM_001081050, intron 16 of 22) intron (NM_001081050, intron 16 of 22) -181047 NR_151537 105243940 NR_151537 Pard3bos2 Gm12747 par-3 family cell polarity regulator beta, opposite strand 2 ncRNA 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-725 chr12 7694086 7694286 + -1.35310 NA Intergenic Intergenic -283491 NM_009693 238055 Mm.221239 NM_009693 ENSMUSG00000020609 Apob AI315052|Apo B-100|apob-100|apob-48 apolipoprotein B protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2847 chr5 96620458 96620658 + -1.35310 NA intron (NM_175473, intron 20 of 73) intron (NM_175473, intron 20 of 73) -172827 NM_013470 11745 Mm.7214 NM_013470 ENSMUSG00000029484 Anxa3 Anx3 annexin A3 protein-coding 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-739 chr12 16210726 16210926 + -1.35310 NA Intergenic L1M4|LINE|L1 378944 NM_172950 14245 Mm.153625 NM_015763 ENSMUSG00000020593 Lpin1 Lipin1|fld lipin 1 protein-coding 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1275 chr15 25270038 25270238 + -1.35310 NA Intergenic Intergenic 143626 NM_027395 70350 Mm.29586 NM_027395 ENSMUSG00000045763 Basp1 2610024P12Rik|CAP-23|CAP23|Ckap3|NAP-22|NAP22 brain abundant, membrane attached signal protein 1 protein-coding 0.015000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-706 chr11 108758120 108758320 + -1.35340 NA intron (NM_145688, intron 3 of 6) intron (NM_145688, intron 3 of 6) 75602 NM_029586 76380 Mm.344071 NM_029586 ENSMUSG00000020728 Cep112 1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco centrosomal protein 112 protein-coding 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2897 chr5 137917791 137917991 + -1.35374 NA intron (NM_007819, intron 2 of 12) intron (NM_007819, intron 2 of 12) 3728 NM_007819 13113 Mm.289886 NM_007819 ENSMUSG00000029727 Cyp3a13 IIIAm2 cytochrome P450, family 3, subfamily a, polypeptide 13 protein-coding 0.010000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1032 chr13 108334612 108334812 + -1.35374 NA intron (NM_178683, intron 2 of 10) L1MA4|LINE|L1 18375 NM_178683 218581 Mm.32318 NM_178683 ENSMUSG00000021697 Depdc1b 9830132O03|AW260467|XTP1 DEP domain containing 1B protein-coding 0.020000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-448 chr5 117396726 117396926 + -1.35374 NA Intergenic Intergenic -7803 NM_028128 72151 Mm.27997 NM_028128 ENSMUSG00000029363 Rfc5 2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5 replication factor C (activator 1) 5 protein-coding 0.010000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1044 chr13 114745043 114745243 + -1.35374 NA Intergenic Intergenic -73094 NM_013826 17434 Mm.19027 NM_013826 ENSMUSG00000015536 Mocs2 AI415403 molybdenum cofactor synthesis 2 protein-coding 0.015000 0.383085 30(TTTTTGTTTTGCTAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2525 chr4 20147359 20147559 + -1.35374 NA intron (NM_001290410, intron 5 of 5) intron (NM_001290410, intron 5 of 5) 105407 NM_010281 14590 Mm.20461 NM_010281 ENSMUSG00000073987 Ggh gamma-GH gamma-glutamyl hydrolase protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1882 chr19 36290924 36291124 + -1.35374 NA Intergenic Intergenic -57305 NM_001368690 76073 Mm.259180 NM_029508 ENSMUSG00000024805 Pcgf5 0610009F02Rik|1110054A01Rik|5830406C17Rik|5830443C21Rik|9530023M17Rik|AI324127 polycomb group ring finger 5 protein-coding 0.010000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-571 chr11 21033451 21033651 + -1.35374 NA Intergenic B3A|SINE|B2 -57773 NM_023324 67245 Mm.28957 NM_023324 ENSMUSG00000020134 Peli1 2810468L03Rik|A930031K15Rik|AA409794|AI586297|D11Ertd676e pellino 1 protein-coding 0.015000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2412 chr3 121712244 121712444 + -1.35374 NA Intergenic Intergenic -11193 NM_010171 14066 Mm.273188 NM_010171 ENSMUSG00000028128 F3 AA409063|CD142|Cf-3|Cf3|TF coagulation factor III protein-coding 0.010000 0.572139 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-378 chr3 121712242 121712442 + -1.35374 NA Intergenic Intergenic -11195 NM_010171 14066 Mm.273188 NM_010171 ENSMUSG00000028128 F3 AA409063|CD142|Cf-3|Cf3|TF coagulation factor III protein-coding 0.010000 0.572139 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-141 chr1 80448523 80448723 + -1.35374 NA intron (NR_040460, intron 1 of 2) intron (NR_040460, intron 1 of 2) 2691 NR_040460 72208 Mm.396181 NR_040460 ENSMUSG00000101483 1700016L21Rik CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan RIKEN cDNA 1700016L21 gene ncRNA 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1692 chr18 17491876 17492076 + -1.35374 NA Intergenic Intergenic 89014 NR_045374 75162 Mm.60874 NR_045374 ENSMUSG00000117615 4930545E07Rik - RIKEN cDNA 4930545E07 gene ncRNA 0.010000 0.353234 -43(TTTTTGTGTTTGAAAT,+,0.00),29(GCTTTCTCTTGCTTAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-287 chr1 172921141 172921341 + -1.35483 NA Intergenic Intergenic -26187 NM_011318 20219 Mm.330510 NM_011318 ENSMUSG00000026542 Apcs Sap serum amyloid P-component protein-coding 0.005000 0.527363 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-19 chr1 80644383 80644583 + -1.35483 NA intron (NM_175291, intron 2 of 55) intron (NM_175291, intron 2 of 55) 20869 NM_001285927 210293 Mm.133473 NM_175291 ENSMUSG00000038608 Dock10 9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694 dedicator of cytokinesis 10 protein-coding 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-143 chr1 80644398 80644598 + -1.35483 NA intron (NM_175291, intron 2 of 55) intron (NM_175291, intron 2 of 55) 20854 NM_001285927 210293 Mm.133473 NM_175291 ENSMUSG00000038608 Dock10 9330153B10Rik|A630054M16Rik|Jr4|Jr5|R75174|ZIZ3|Zizimin3|mKIAA0694 dedicator of cytokinesis 10 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3651 chr9 115523586 115523786 + -1.35558 NA Intergenic Intergenic 141867 NR_130329 100316675 NR_130329 ENSMUSG00000080409 Mir467h Mirn467h|mmu-mir-467h microRNA 467h ncRNA 0.005000 0.412935 -66(ATTTGGATGACCAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1780 chr18 59280231 59280431 + -1.35558 NA intron (NM_001081328, intron 2 of 2) intron (NM_001081328, intron 2 of 2) 104991 NM_001081328 78923 Mm.84007 NM_001081328 ENSMUSG00000058152 Chsy3 4833446K15Rik|AI662215 chondroitin sulfate synthase 3 protein-coding 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2304 chr3 68035200 68035400 + -1.35558 NA intron (NM_001113419, intron 1 of 10) intron (NM_001113419, intron 1 of 10) -29502 NM_001113421 30953 Mm.331064 NM_013928 ENSMUSG00000027777 Schip1 Nf2ip|Schip-1 schwannomin interacting protein 1 protein-coding 0.015000 0.487562 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-282 chr18 59280401 59280601 + -1.35558 NA intron (NM_001081328, intron 2 of 2) intron (NM_001081328, intron 2 of 2) 105161 NM_001081328 78923 Mm.84007 NM_001081328 ENSMUSG00000058152 Chsy3 4833446K15Rik|AI662215 chondroitin sulfate synthase 3 protein-coding 0.010000 0.338308 37(ATCACCATGAGAATTA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-839 chr12 91346755 91346955 + -1.35588 NA intron (NM_181815, intron 7 of 25) L1_Mur3|LINE|L1 37554 NM_181815 75216 Mm.312204 NM_181815 ENSMUSG00000061533 Cep128 4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20 centrosomal protein 128 protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2811 chr5 75987511 75987711 + -1.35629 NA Intergenic Intergenic -9156 NM_010612 16542 Mm.285 NM_010612 ENSMUSG00000062960 Kdr 6130401C07|Flk-1|Flk1|Krd-1|Ly73|VEGFR-2|VEGFR2|orv|sVEGFR-2 kinase insert domain protein receptor protein-coding 0.020000 0.328358 40(TTGTTTTCTTTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-274 chr1 162863584 162863784 + -1.35629 NA intron (NM_010231, intron 1 of 8) intron (NM_010231, intron 1 of 8) 2926 NM_010231 14261 Mm.976 NM_010231 ENSMUSG00000040181 Fmo1 - flavin containing monooxygenase 1 protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3377 chr8 76509401 76509601 + -1.35629 NA Intergenic Intergenic 391120 NR_028579 102640923 Mm.367571 NR_028579 ENSMUSG00000074235 Gm10649 - predicted gene 10649 ncRNA 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2440 chr3 129083957 129084157 + -1.35629 NA Intergenic Intergenic -115821 NM_001286942 18741 Mm.246804 NM_011098 ENSMUSG00000028023 Pitx2 9430085M16Rik|Brx1|Brx1b|Munc30|Otlx2|Ptx2|Rieg paired-like homeodomain transcription factor 2 protein-coding 0.010000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1417 chr16 13704078 13704278 + -1.35629 NA TTS (NM_001177552) TTS (NM_001177552) -25658 NR_040574 76684 Mm.491043 NR_040574 ENSMUSG00000086550 Pla2g10os 1810007I06Rik phospholipase A2, group X, opposite strand ncRNA 0.025000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-305 chr1 184748675 184748875 + -1.35629 NA Intergenic Intergenic -16282 NM_008250 15284 Mm.1347 NM_008250 ENSMUSG00000039377 Hlx Hlx1 H2.0-like homeobox protein-coding 0.045000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2131 chr2 134470316 134470516 + -1.35629 NA Intergenic Intergenic 83936 NM_010403 15112 Mm.26634 NM_010403 ENSMUSG00000027261 Hao1 GOX|Gox1|Hao-1 hydroxyacid oxidase 1, liver protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-855 chr12 99497108 99497308 + -1.35629 NA Intergenic Intergenic -47134 NM_183186 71375 Mm.341972 NM_183186 ENSMUSG00000033713 Foxn3 5430426H20Rik|AA589593|AW556347|Ches1|Ches1l|HTLFL1 forkhead box N3 protein-coding 0.010000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2375 chr3 107348376 107348576 + -1.35629 NA Intergenic MLT2B4|LTR|ERVL -15187 NM_001045807 229700 Mm.27966 NM_001045807 ENSMUSG00000048109 Rbm15 C230088J01Rik|mKIAA1438 RNA binding motif protein 15 protein-coding 0.020000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3522 chr9 40422321 40422521 + -1.35629 NA intron (NM_001357617, intron 1 of 20) intron (NM_001357617, intron 1 of 20) 33343 NM_172768 235283 Mm.138434 NM_172768 ENSMUSG00000040111 Gramd1b 3222402H23|A930008A22Rik|AI593249|mKIAA1201 GRAM domain containing 1B protein-coding 0.015000 0.388060 -51(ATTTGAAAGTGAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1326 chr15 54503601 54503801 + -1.35629 NA Intergenic Intergenic -67665 NM_178920 105853 Mm.410994 NM_178920 ENSMUSG00000024479 Mal2 AI461653 mal, T cell differentiation protein 2 protein-coding 0.005000 0.338308 -35(CCATTTTCATGTAAAT,+,0.00),36(ATTTTCTTGACAAATC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1937 chr2 8553423 8553623 + -1.35629 NA Intergenic Intergenic -635992 NR_038180 73438 Mm.23558 NR_038180 ENSMUSG00000085580 1700061F12Rik - RIKEN cDNA 1700061F12 gene ncRNA 0.005000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1842 chr19 15913195 15913395 + -1.35629 NA intron (NM_177420, intron 6 of 8) intron (NM_177420, intron 6 of 8) 11327 NM_001205339 107272 Mm.289936 NM_177420 ENSMUSG00000024640 Psat1 D8Ertd814e|EPIP|PSA|Psat phosphoserine aminotransferase 1 protein-coding 0.010000 0.402985 -53(ATATGCATAAGAAGTG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-269 chr1 159966620 159966820 + -1.35629 NA Intergenic Intergenic -77660 NR_028111 67647 Mm.171518 NM_001024470 ENSMUSG00000090394 4930523C07Rik - RIKEN cDNA 4930523C07 gene protein-coding 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3424 chr8 102598988 102599188 + -1.35629 NA Intergenic Intergenic 186023 NM_009866 12552 Mm.1571 NM_009866 ENSMUSG00000031673 Cdh11 Cad11|OSF-4 cadherin 11 protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2986 chr6 62673447 62673647 + -1.35629 NA Intergenic L1MDa|LINE|L1 -582459 NM_001370966 0.000000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2092 chr2 110893560 110893760 + -1.35629 NA intron (NM_001355246, intron 1 of 3) intron (NM_001355246, intron 1 of 3) -53601 NM_001355244 228432 Mm.483325 NM_001081556 ENSMUSG00000074968 Ano3 AI838058|B230324K02Rik|Tmem16c anoctamin 3 protein-coding 0.005000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-88 chr1 56705029 56705229 + -1.35629 NA Intergenic Intergenic -67678 NM_027661 71066 Mm.152656 NM_027661 ENSMUSG00000045336 Hsfy2 4933413G11Rik|Hspy2l heat shock transcription factor, Y-linked 2 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-591 chr11 33993444 33993644 + -1.35629 NA promoter-TSS (NM_001190886) promoter-TSS (NM_001190886) -351 NM_001190886 70357 Mm.252514 NM_027398 ENSMUSG00000053519 Kcnip1 KCHIP1|Kchip1.2 Kv channel-interacting protein 1 protein-coding 0.020000 0.567164 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2215 chr3 10902834 10903034 + -1.35629 NA Intergenic Intergenic -462804 NM_001127191 74718 Mm.440548 NM_029068 ENSMUSG00000027534 Snx16 4930522N22Rik|AI117577|AI747675 sorting nexin 16 protein-coding 0.000000 0.283582 -7(TATGAATAAGTAATG,-,0.00) 43(ATAAACATGAAAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-939 chr13 35035859 35036059 + -1.35629 NA Intergenic Intergenic -41815 NM_001110331 23986 Mm.491141 NM_011868 ENSMUSG00000021417 Eci2 Acbd2|Drs1|Hca88|Peci enoyl-Coenzyme A delta isomerase 2 protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2759 chr5 35940722 35940922 + -1.35629 NA intron (NM_027373, intron 3 of 16) intron (NM_027373, intron 3 of 16) 47503 NM_027373 70292 Mm.125167 NM_027373 ENSMUSG00000029094 Afap1 2600003E23Rik|9630044L16Rik|AI848729|Afap|mKIAA3018 actin filament associated protein 1 protein-coding 0.010000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2254 chr3 46783599 46783799 + -1.35629 NA Intergenic B3A|SINE|B2 117083 NR_105800 102465199 NR_105800 ENSMUSG00000098417 Mir6379 Gm27730|mmu-mir-6379 microRNA 6379 ncRNA 0.000000 0.278607 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3300 chr8 27213589 27213789 + -1.35629 NA Intergenic Lx6|LINE|L1 -11142 NM_029674 76615 Mm.272794 NM_029674 ENSMUSG00000039720 Got1l1 1700083M11Rik glutamic-oxaloacetic transaminase 1-like 1 protein-coding 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3468 chr8 127792946 127793146 + -1.35629 NA Intergenic Intergenic 485179 NR_105822 102465212 NR_105822 ENSMUSG00000099326 Mir21c Gm28013|mmu-mir-21c microRNA 21c ncRNA 0.015000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3713 chrX 76180411 76180611 + -1.35629 NA Intergenic B1F|SINE|Alu -83795 NM_001013760 238829 Mm.292319 NM_001013760 ENSMUSG00000071738 Cldn34b3 EG238829|Gm4937 claudin 34B3 protein-coding 0.000000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-840 chr12 91476253 91476453 + -1.35629 NA intron (NM_001113404, intron 1 of 8) intron (NM_001113404, intron 1 of 8) 75360 NM_011648 22095 Mm.173847 NM_011648 ENSMUSG00000020963 Tshr AI481368|hypothroid|hyt|pet thyroid stimulating hormone receptor protein-coding 0.025000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1531 chr16 82461307 82461507 + -1.35629 NA Intergenic Intergenic 1260710 NM_010954 17968 Mm.433941 NM_010954 ENSMUSG00000022762 Ncam2 Ncam-2|Ocam|RNCAM neural cell adhesion molecule 2 protein-coding 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3692 chrX 46408448 46408648 + -1.35629 NA Intergenic RMER6A|LTR|ERVK 79541 NM_028514 73360 Mm.60929 NM_028514 ENSMUSG00000046615 Actrt1 1700061J02Rik|Arp-T1 actin-related protein T1 protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-454 chr10 77144507 77144707 + -1.35629 NA intron (NM_009929, intron 2 of 41) MLT1E1|LTR|ERVL-MaLR 21923 NM_009929 12822 Mm.4352 NM_009929 ENSMUSG00000001435 Col18a1 - collagen, type XVIII, alpha 1 protein-coding 0.005000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-301 chr1 183193885 183194085 + -1.35629 NA intron (NM_001278218, intron 1 of 8) intron (NM_001278218, intron 1 of 8) 27544 NM_001278219 68897 Mm.327216 NM_026866 ENSMUSG00000030768 Disp1 1190008H24Rik|DispA dispatched RND transporter family member 1 protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1492 chr16 61841817 61842017 + -1.35629 NA Intergenic Lx9|LINE|L1 944799 NM_178925 106338 Mm.26321 NM_178925 ENSMUSG00000050312 Nsun3 6720484A09Rik|AU022521 NOL1/NOP2/Sun domain family member 3 protein-coding 0.000000 0.343284 -11(TATGCATATGCACA,+,0.00),-11(TATGCATATGCACA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1826 chr19 4675840 4676040 + -1.35629 NA intron (NM_001033447, intron 3 of 14) intron (NM_001033447, intron 3 of 14) 22728 NM_001033447 381196 Mm.297789 NM_001033447 ENSMUSG00000071691 Gm960 TOPOVIBL|Top6bl predicted gene 960 protein-coding 0.010000 0.378109 35(CTCAGAATAACAAAGA,-,0.00),41(ATAACAAAGACAAAGA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-531 chr8 80815403 80815603 + -1.35786 NA intron (NM_021356, intron 1 of 9) intron (NM_021356, intron 1 of 9) 64976 NM_021356 14388 Mm.277409 NM_021356 ENSMUSG00000031714 Gab1 AA408973|AW107238 growth factor receptor bound protein 2-associated protein 1 protein-coding 0.025000 0.373134 -72(AAATGAATAACAAAGA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-441 chr5 80675553 80675753 + -1.35786 NA Intergenic Intergenic -344918 NM_001347368 319387 Mm.273631 NM_198702 ENSMUSG00000037605 Adgrl3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768 adhesion G protein-coupled receptor L3 protein-coding 0.000000 0.273632 -70(ATTTACATAACAATGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1793 chr18 69984647 69984847 + -1.35786 NA 3' UTR (NM_030554, exon 6 of 6) 3' UTR (NM_030554, exon 6 of 6) 59188 NM_201362 381175 Mm.266831 NM_201362 ENSMUSG00000038903 Ccdc68 BC046343 coiled-coil domain containing 68 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2815 chr5 80675538 80675738 + -1.35786 NA Intergenic Intergenic -344933 NM_001347368 319387 Mm.273631 NM_198702 ENSMUSG00000037605 Adgrl3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768 adhesion G protein-coupled receptor L3 protein-coding 0.000000 0.273632 -55(ATTTACATAACAATGT,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-382 chr3 125226922 125227122 + -1.35786 NA Intergenic Lx7|LINE|L1 -177069 NM_022565 64580 Mm.444289 NM_022565 ENSMUSG00000027971 Ndst4 4930439H17Rik N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4 protein-coding 0.005000 0.343284 63(AATTGAAAGACAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1287 chr15 31298849 31299049 + -1.35786 NA intron (NM_001357923, intron 4 of 4) intron (NM_001357923, intron 4 of 4) 68810 NM_001164441 67434 Mm.102470 NM_026153 ENSMUSG00000022237 Ankrd33b 0610012A05Rik|3021401C12Rik|5730557B15Rik ankyrin repeat domain 33B protein-coding 0.015000 0.472637 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-259 chr17 77017302 77017502 + -1.35786 NA Intergenic Intergenic 1156379 NR_033456 100043885 Mm.127562 NR_033456 ENSMUSG00000117539 Gm4710 - predicted gene 4710 ncRNA 0.000000 0.293532 64(GATAAATATTCATA,+,0.00),64(GATAAATATTCATA,-,0.00) 35(TGATTCTGTTTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2964 chr6 40590185 40590385 + -1.35786 NA Intergenic Lx6|LINE|L1 -4480 NM_021364 23845 Mm.103765 NM_021364 ENSMUSG00000029915 Clec5a Clecsf5|Ly100|MDL-1|Mdl1 C-type lectin domain family 5, member a protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2480 chr3 147166407 147166607 + -1.35934 NA Intergenic Intergenic 314140 NM_001357217 70892 Mm.187793 NM_027594 ENSMUSG00000036745 Ttll7 1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7 tubulin tyrosine ligase-like family, member 7 protein-coding 0.005000 0.398010 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-569 chr9 102972396 102972596 + -1.36202 NA Intergenic Charlie13a|DNA|hAT-Charlie -35991 NR_157194 24059 Mm.207106 NM_033314 ENSMUSG00000032548 Slco2a1 2310021C19Rik|Pgt|Slc21a2 solute carrier organic anion transporter family, member 2a1 protein-coding 0.005000 0.447761 -46(ATTTTCTCATTCTTAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-21 chr1 104711020 104711220 + -1.36202 NA Intergenic Intergenic -57400 NM_011800 23836 Mm.103640 NM_011800 ENSMUSG00000050840 Cdh20 Cdh7 cadherin 20 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-469 chr10 84711925 84712125 + -1.36266 NA intron (NM_027423, intron 23 of 27) intron (NM_027423, intron 23 of 27) -44023 NM_001024918 71137 Mm.79070 NM_027689 ENSMUSG00000020037 Rfx4 4933412G19Rik|NYD-sp10 regulatory factor X, 4 (influences HLA class II expression) protein-coding 0.020000 0.398010 5(ATTAAAAAAAAAAAAA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-71 chr10 84711878 84712078 + -1.36266 NA intron (NM_027423, intron 23 of 27) intron (NM_027423, intron 23 of 27) -44070 NM_001024918 71137 Mm.79070 NM_027689 ENSMUSG00000020037 Rfx4 4933412G19Rik|NYD-sp10 regulatory factor X, 4 (influences HLA class II expression) protein-coding 0.010000 0.378109 52(ATTAAAAAAAAAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-603 chr11 41690853 41691053 + -1.36300 NA Intergenic Lx8|LINE|L1 309904 NM_177408 14406 Mm.5309 NM_008073 ENSMUSG00000020436 Gabrg2 GABAA-R|Gabrg-2|gamma2 gamma-aminobutyric acid (GABA) A receptor, subunit gamma 2 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3548 chr9 59669233 59669433 + -1.36528 NA intron (NM_011099, intron 5 of 10) B2_Mm2|SINE|B2 12965 NM_001253883 18746 Mm.326167 NM_011099 ENSMUSG00000032294 Pkm AA414905|AL024370|AL024424|Pk-2|Pk-3|Pk3|Pkm2 pyruvate kinase, muscle protein-coding 0.010000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1729 chr18 35250011 35250211 + -1.36528 NA intron (NM_009818, intron 14 of 17) intron (NM_009818, intron 14 of 17) -35087 NM_178005 107065 Mm.39900 NM_178005 ENSMUSG00000071862 Lrrtm2 AI851755|BB129880|C630011A14Rik|mKIAA0416 leucine rich repeat transmembrane neuronal 2 protein-coding 0.015000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3271 chr8 10848850 10849050 + -1.36528 NA Intergenic Intergenic 33504 NR_040705 320014 Mm.403203 NR_040705 ENSMUSG00000109473 B930025P03Rik - RIKEN cDNA B930025P03 gene ncRNA 0.005000 0.467662 -56(AATCCATATTCAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2686 chr4 126500949 126501149 + -1.36528 NA intron (NM_153177, intron 15 of 17) L1MD3|LINE|L1 32409 NM_153177 76850 Mm.86705 NM_153177 ENSMUSG00000042500 Ago4 5730550L01Rik|AI481660|Eif2c4 argonaute RISC catalytic subunit 4 protein-coding 0.010000 0.358209 9(TATTCATATTTATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-276 chr1 163819590 163819790 + -1.36528 NA intron (NM_010629, intron 8 of 20) L1M5|LINE|L1 40107 NM_001305643 16579 Mm.4651 NM_010629 ENSMUSG00000026585 Kifap3 KAP-3|KAP3|SMAP kinesin-associated protein 3 protein-coding 0.005000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-952 chr13 46678066 46678266 + -1.36528 NA Intergenic Intergenic 8644 NM_001033192 97863 Mm.275934 NM_001033192 ENSMUSG00000069237 Fam8a1 C78339 family with sequence similarity 8, member A1 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3048 chr6 108094934 108095134 + -1.36528 NA Intergenic Intergenic 29989 NM_178391 74729 Mm.56539 NM_178391 ENSMUSG00000034639 Setmar 5830404F24Rik|Etet2 SET domain without mariner transposase fusion protein-coding 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3700 chrX 53100127 53100327 + -1.36528 NA intron (NM_001357802, intron 1 of 2) intron (NM_001357802, intron 1 of 2) 14178 NM_019538 56096 Mm.274842 NM_019538 ENSMUSG00000061082 Plac1 DXWsu72e|Epcs26|Oosp2l placental specific protein 1 protein-coding 0.020000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2372 chr3 104194176 104194376 + -1.36528 NA intron (NM_001159354, intron 1 of 20) L1Md_A|LINE|L1 26130 NM_001159354 99470 Mm.264849 NM_133853 ENSMUSG00000052539 Magi3 4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-680 chr11 92723489 92723689 + -1.36528 NA Intergenic L1_Mus2|LINE|L1 -374777 NM_001361707 72605 Mm.342160 NM_028296 ENSMUSG00000056158 Car10 2700029L05Rik|BB085816|Ca10 carbonic anhydrase 10 protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3736 chrX 128220409 128220609 + -1.36528 NA Intergenic L1_Mus3|LINE|L1 -483955 NM_001281537 73934 Mm.159093 NM_001281537 ENSMUSG00000043569 Cldn34c4 4930412D23Rik claudin 34C4 protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3321 chr8 38399517 38399717 + -1.36528 NA intron (NM_145841, intron 1 of 7) intron (NM_145841, intron 1 of 7) -147415 NR_029884 723860 NR_029884 ENSMUSG00000065457 Mir383 Mirn383|mir-383|mmu-mir-383 microRNA 383 ncRNA 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3628 chr9 101234404 101234604 + -1.36528 NA intron (NM_001161362, intron 1 of 13) L2|LINE|L2 17328 NM_001161362 235542 Mm.335386 NM_172144 ENSMUSG00000043154 Ppp2r3a 3222402P14Rik|A730042E07|C530025M11Rik protein phosphatase 2, regulatory subunit B'', alpha protein-coding 0.005000 0.273632 82(CTATTTTCGTGCAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1755 chr18 48364965 48365165 + -1.36528 NA Intergenic Intergenic 319730 NM_001025388 433182 Mm.70666 NM_001025388 ENSMUSG00000059040 Eno1b EG433182|Eno-1|Eno1|Gm5506|NNE enolase 1B, retrotransposed protein-coding 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-730 chr12 9965837 9966037 + -1.36528 NA Intergenic Intergenic 391495 NM_011859 23967 Mm.45055 NM_011859 ENSMUSG00000048387 Osr1 Odd1|Osr odd-skipped related transcription factor 1 protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1435 chr16 24854352 24854552 + -1.36528 NA intron (NM_178665, intron 9 of 12) intron (NM_178665, intron 9 of 12) 132597 NM_001145954 210126 Mm.209385 NM_178665 ENSMUSG00000033306 Lpp 9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16 LIM domain containing preferred translocation partner in lipoma protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3441 chr8 112198611 112198811 + -1.36528 NA Intergenic Intergenic 187352 NM_020584 57321 Mm.213064 NM_020584 ENSMUSG00000033430 Terf2ip Rap1 telomeric repeat binding factor 2, interacting protein protein-coding 0.015000 0.437811 -67(CTCTACATAATAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3461 chr8 122839471 122839671 + -1.36528 NA Intergenic Intergenic -8803 NM_007662 12555 Mm.1976 NM_007662 ENSMUSG00000031962 Cdh15 AI323380|Cdh14|Mcad cadherin 15 protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2678 chr4 119095113 119095313 + -1.36528 NA Intergenic Intergenic -13532 NM_011400 20525 Mm.21002 NM_011400 ENSMUSG00000028645 Slc2a1 Glut-1|Glut1 solute carrier family 2 (facilitated glucose transporter), member 1 protein-coding 0.010000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3138 chr7 72203234 72203434 + -1.36837 NA intron (NM_001024703, intron 10 of 22) intron (NM_001024703, intron 10 of 22) 103261 NM_001024703 244049 Mm.217412 NM_001024703 ENSMUSG00000032776 Mctp2 Gm489 multiple C2 domains, transmembrane 2 protein-coding 0.010000 0.398010 67(GATGAATATTCAAG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-512 chr7 136876413 136876613 + -1.36837 NA Intergenic Intergenic -18098 NM_008598 17314 Mm.440219 NM_008598 ENSMUSG00000054612 Mgmt AGT|AI267024|Agat O-6-methylguanine-DNA methyltransferase protein-coding 0.000000 0.338308 -1(CATGAATAAATGATA,+,0.00) 22(ATATGAATAAAAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2899 chr5 138783687 138783887 + -1.37103 NA intron (NM_030565, intron 3 of 9) MLT1D|LTR|ERVL-MaLR 28706 NM_030565 80752 Mm.320355 NM_030565 ENSMUSG00000025854 Fam20c C76981|DMP-4|DMP4|GEF-CK|mKIAA4081 family with sequence similarity 20, member C protein-coding 0.040000 0.477612 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-451 chr5 138783712 138783912 + -1.37103 NA intron (NM_030565, intron 3 of 9) MLT1D|LTR|ERVL-MaLR 28731 NM_030565 80752 Mm.320355 NM_030565 ENSMUSG00000025854 Fam20c C76981|DMP-4|DMP4|GEF-CK|mKIAA4081 family with sequence similarity 20, member C protein-coding 0.035000 0.457711 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-181 chr14 98580426 98580626 + -1.37185 NA Intergenic Intergenic -410761 NM_001038610 13134 Mm.320593 NM_007826 ENSMUSG00000055639 Dach1 Dac|Dach dachshund family transcription factor 1 protein-coding 0.010000 0.402985 -21(TCTTTATCATGCATCT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1493 chr16 62635055 62635255 + -1.37227 NA Intergenic Intergenic 151561 NM_178925 106338 Mm.26321 NM_178925 ENSMUSG00000050312 Nsun3 6720484A09Rik|AU022521 NOL1/NOP2/Sun domain family member 3 protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3571 chr9 77312610 77312810 + -1.37227 NA intron (NM_001368978, intron 1 of 7) intron (NM_001368978, intron 1 of 7) 27917 NM_001368966 69642 Mm.35008 NM_027150 ENSMUSG00000032355 Mlip 2310046A06Rik|AI931782|CIP muscular LMNA-interacting protein protein-coding 0.010000 0.313433 84(TATTTACCATGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-976 chr13 70038516 70038716 + -1.37227 NA intron (NR_131156, intron 2 of 2) intron (NR_131156, intron 2 of 2) -10268 NR_045965 74280 Mm.273343 NR_045965 ENSMUSG00000099639 1700084F23Rik 1700003E18Rik|4930589D02Rik RIKEN cDNA 1700084F23 gene ncRNA 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3175 chr7 91285777 91285977 + -1.37227 NA intron (NM_011807, intron 1 of 22) (TTCA)n|Simple_repeat|Simple_repeat 195091 NM_011807 23859 Mm.147213 NM_011807 ENSMUSG00000052572 Dlg2 A330103J02Rik|B230218P12Rik|B330007M19Rik|Dlgh2|Gm1197|Gm21505|PSD93 discs large MAGUK scaffold protein 2 protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1571 chr17 7288126 7288326 + -1.37227 NA intron (NM_011299, intron 14 of 20) intron (NM_011299, intron 14 of 20) -36434 NR_046291 21461 Mm.264651 NM_011553 ENSMUSG00000071322 Tcp10a D17Leh66A|D17Leh66aa|Gm10326|T66A-a|Tcp-10a t-complex protein 10a protein-coding 0.015000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2738 chr5 19035374 19035574 + -1.37227 NA Intergenic Intergenic 191081 NR_102341 70832 Mm.398993 NR_102341 ENSMUSG00000097626 4921504A21Rik - RIKEN cDNA 4921504A21 gene ncRNA 0.005000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2737 chr5 18943584 18943784 + -1.37247 NA Intergenic MER54B|LTR|ERVL 282871 NR_102341 70832 Mm.398993 NR_102341 ENSMUSG00000097626 4921504A21Rik - RIKEN cDNA 4921504A21 gene ncRNA 0.000000 0.348259 -57(ATTCTATTATTCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-174 chr14 74072096 74072296 + -1.37247 NA Intergenic Lx10|LINE|L1 -283331 NR_046059 74425 Mm.399498 NR_046059 ENSMUSG00000115845 4933402J15Rik - RIKEN cDNA 4933402J15 gene ncRNA 0.010000 0.348259 -52(AATAAATATGTATG,+,0.00),-52(AATAAATATGTATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2900 chr5 139585317 139585517 + -1.37318 NA Intergenic Intergenic 41519 NM_013702 22255 Mm.42190 NM_013702 ENSMUSG00000029546 Uncx Chx4|Uncx4.1 UNC homeobox protein-coding 0.045000 0.597015 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-410 chr4 83814015 83814215 + -1.37318 NA intron (NM_001355549, intron 23 of 24) intron (NM_001355549, intron 23 of 24) 230764 NR_130998 78238 Mm.243903 NR_130998 ENSMUSG00000085217 6030471H07Rik - RIKEN cDNA 6030471H07 gene ncRNA 0.010000 0.323383 42(ATTCAATAATTCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2410 chr3 121586708 121586908 + -1.37318 NA Intergenic L1MA6|LINE|L1 -54464 NM_145394 213603 Mm.33062 NM_145394 ENSMUSG00000039865 Slc44a3 BC010552 solute carrier family 44, member 3 protein-coding 0.025000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2998 chr6 73977872 73978072 + -1.37318 NA Intergenic Intergenic -369299 NR_157242 102634075 Mm.78553 NR_157242 ENSMUSG00000107441 Gm31747 - predicted gene, 31747 ncRNA 0.005000 0.273632 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-497 chr10 102553214 102553414 + -1.37318 NA Intergenic Intergenic 41092 NM_146240 237504 Mm.282672 NM_146240 ENSMUSG00000044921 Rassf9 AW322107|Pamci Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 protein-coding 0.005000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1673 chr18 6613589 6613789 + -1.37318 NA intron (NM_027598, intron 1 of 9) L1_Mus3|LINE|L1 10060 NM_027598 70901 Mm.158484 NM_027598 ENSMUSG00000039540 4921524L21Rik - RIKEN cDNA 4921524L21 gene protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-112 chr1 69111174 69111374 + -1.37336 NA Intergenic Intergenic -3215 NM_010154 13869 Mm.442420 NM_010154 ENSMUSG00000062209 Erbb4 Her4|c-erbB-4 erb-b2 receptor tyrosine kinase 4 protein-coding 0.015000 0.412935 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-469 chr6 40590091 40590291 + -1.37336 NA Intergenic Lx6|LINE|L1 -4386 NM_021364 23845 Mm.103765 NM_021364 ENSMUSG00000029915 Clec5a Clecsf5|Ly100|MDL-1|Mdl1 C-type lectin domain family 5, member a protein-coding 0.005000 0.412935 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-219 chr16 9385547 9385747 + -1.37336 NA Intergenic Lx8|LINE|L1 555547 NM_001081400 69053 Mm.390868 NM_001081400 ENSMUSG00000022507 1810013L24Rik 1110017P05Rik|3010002C02Rik|AA792997|AW124177|Gm19906|R74903 RIKEN cDNA 1810013L24 gene protein-coding 0.010000 0.363184 -37(TGTTTCCTTTGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-955 chr13 48073103 48073303 + -1.37364 NA intron (NR_102303, intron 1 of 2) Lx7|LINE|L1 -54595 NR_038004 70971 Mm.158514 NR_038004 ENSMUSG00000047324 4931429P17Rik - RIKEN cDNA 4931429P17 gene ncRNA 0.005000 0.383085 74(ATTTCCAATAAAATGG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-142 chr13 48073081 48073281 + -1.37364 NA intron (NR_102303, intron 1 of 2) Lx7|LINE|L1 -54573 NR_038004 70971 Mm.158514 NR_038004 ENSMUSG00000047324 4931429P17Rik - RIKEN cDNA 4931429P17 gene ncRNA 0.010000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-108 chr11 108758061 108758261 + -1.37468 NA intron (NM_145688, intron 3 of 6) intron (NM_145688, intron 3 of 6) 75543 NM_029586 76380 Mm.344071 NM_029586 ENSMUSG00000020728 Cep112 1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco centrosomal protein 112 protein-coding 0.010000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2613 chr4 76357239 76357439 + -1.37469 NA intron (NR_160919, intron 10 of 39) intron (NR_160919, intron 10 of 39) -13096 NM_001352628 19266 Mm.184021 NM_011211 ENSMUSG00000028399 Ptprd 1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta protein tyrosine phosphatase, receptor type, D protein-coding 0.005000 0.333333 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-407 chr4 76357306 76357506 + -1.37469 NA intron (NR_160919, intron 10 of 39) intron (NR_160919, intron 10 of 39) -13163 NM_001352628 19266 Mm.184021 NM_011211 ENSMUSG00000028399 Ptprd 1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta protein tyrosine phosphatase, receptor type, D protein-coding 0.000000 0.348259 80(TTATTTTTGTGTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1908 chr19 50583322 50583522 + -1.37469 NA intron (NM_001360457, intron 1 of 26) intron (NM_001360457, intron 1 of 26) 95224 NM_001290356 58178 Mm.313672 NM_021377 ENSMUSG00000043531 Sorcs1 Sorcs|mSorCS sortilin-related VPS10 domain containing receptor 1 protein-coding 0.000000 0.373134 32(TTATTATGATGGAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-848 chr12 94735983 94736183 + -1.37591 NA Intergenic Intergenic 808745 NR_106201 102466888 NR_106201 ENSMUSG00000098931 Mir8099-2 Gm27692|mmu-mir-8099-2 microRNA 8099-2 ncRNA 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-934 chr13 32604278 32604478 + -1.37591 NA Intergenic Intergenic 179586 NM_001368880 238564 Mm.60041 NM_001166030 ENSMUSG00000044951 Mylk4 EG238564 myosin light chain kinase family, member 4 protein-coding 0.015000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-922 chr13 26226348 26226548 + -1.37591 NA Intergenic Intergenic 85958 NR_045933 73576 Mm.45473 NR_045933 ENSMUSG00000084811 1700092E19Rik - RIKEN cDNA 1700092E19 gene ncRNA 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2566 chr4 47225965 47226165 + -1.37591 NA intron (NM_009928, intron 2 of 39) intron (NM_009928, intron 2 of 39) 18053 NM_009928 12819 Mm.233547 NM_009928 ENSMUSG00000028339 Col15a1 - collagen, type XV, alpha 1 protein-coding 0.015000 0.492537 39(CATGAATATGCATG,+,0.00),39(CATGAATATGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2076 chr2 105978155 105978355 + -1.37591 NA intron (NR_033993, intron 2 of 3) intron (NR_033993, intron 2 of 3) 25294 NR_033993 99349 Mm.25661 NM_026992 ENSMUSG00000027166 Dnajc24 1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3 DnaJ heat shock protein family (Hsp40) member C24 protein-coding 0.000000 0.452736 -18(TTCTGCATCACAAAGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2894 chr5 133100350 133100550 + -1.37591 NA Intergenic Intergenic -557230 NM_001363480 319974 Mm.409595 NM_177047 ENSMUSG00000029673 Auts2 2700063G02Rik|A730011F23Rik|D830032G16Rik autism susceptibility candidate 2 protein-coding 0.010000 0.412935 -31(AATGCATATGTAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2337 chr3 84646239 84646439 + -1.37591 NA Intergenic Intergenic -19853 NM_177260 320782 Mm.107370 NM_177260 ENSMUSG00000056498 Tmem154 9930117H01Rik transmembrane protein 154 protein-coding 0.015000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-298 chr1 182455247 182455447 + -1.37591 NA intron (NM_173378, intron 15 of 17) B3|SINE|B2 46180 NM_173378 209456 Mm.287450 NM_173378 ENSMUSG00000026510 Trp53bp2 53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550 transformation related protein 53 binding protein 2 protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3558 chr9 63844154 63844354 + -1.37591 NA Intergenic Intergenic -86260 NM_016769 17127 Mm.7320 NM_016769 ENSMUSG00000032402 Smad3 AU022421|Madh3 SMAD family member 3 protein-coding 0.025000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-128 chr1 72008897 72009097 + -1.37591 NA Intergenic Intergenic -3802 NR_040454 71134 Mm.370574 NR_040454 ENSMUSG00000101848 4933417E11Rik - RIKEN cDNA 4933417E11 gene ncRNA 0.005000 0.343284 5(CAATTTTCTTTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-919 chr13 21492917 21493117 + -1.37591 NA Intergenic Intergenic 13507 NR_026798 100038371 Mm.133328 NR_026798 Zfp389 - zinc finger protein 389 pseudo 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1859 chr19 24259792 24259992 + -1.37591 NA non-coding (NR_157400, exon 5 of 5) non-coding (NR_157400, exon 5 of 5) 20698 NM_008044 14297 Mm.7319 NM_008044 ENSMUSG00000059363 Fxn FA|FARR|Frda|X25 frataxin protein-coding 0.020000 0.447761 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-191 chr15 15981217 15981417 + -1.37591 NA Intergenic Intergenic -747598 NM_009869 12565 Mm.439758 NM_009869 ENSMUSG00000025370 Cdh9 - cadherin 9 protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-299 chr1 182455425 182455625 + -1.37591 NA intron (NM_173378, intron 15 of 17) intron (NM_173378, intron 15 of 17) 46358 NM_173378 209456 Mm.287450 NM_173378 ENSMUSG00000026510 Trp53bp2 53BP2|AI746547|ASPP2|PPP1R13A|Tp53bp2|X98550 transformation related protein 53 binding protein 2 protein-coding 0.005000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-63 chr10 63907341 63907541 + -1.37621 NA intron (NM_177612, intron 7 of 17) L1MA7|LINE|L1 86386 NM_001164519 216033 Mm.444692 NM_177612 ENSMUSG00000060843 Ctnna3 4930429L08Rik|4933408A16|Catna3|Vr22 catenin (cadherin associated protein), alpha 3 protein-coding 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1700 chr18 22389555 22389755 + -1.37630 NA intron (NM_001167777, intron 2 of 12) intron (NM_001167777, intron 2 of 12) 44566 NM_001167777 211961 Mm.392310 NM_001167777 ENSMUSG00000045215 Asxl3 C230079D11Rik|D430002O22Rik|D930044O18Rik|Gm329|Gm945 additional sex combs like 3, transcriptional regulator protein-coding 0.000000 0.388060 67(GCTGTTTCATGCTAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-391 chr3 159068834 159069034 + -1.37730 NA Intergenic ORR1B1|LTR|ERVL-MaLR -7430 NR_040750 624759 Mm.491054 NR_040750 ENSMUSG00000106053 Gm20752 - predicted gene, 20752 ncRNA 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2505 chr3 159068837 159069037 + -1.37730 NA Intergenic ORR1B1|LTR|ERVL-MaLR -7427 NR_040750 624759 Mm.491054 NR_040750 ENSMUSG00000106053 Gm20752 - predicted gene, 20752 ncRNA 0.000000 0.402985 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-496 chr7 72203164 72203364 + -1.37809 NA intron (NM_001024703, intron 10 of 22) intron (NM_001024703, intron 10 of 22) 103331 NM_001024703 244049 Mm.217412 NM_001024703 ENSMUSG00000032776 Mctp2 Gm489 multiple C2 domains, transmembrane 2 protein-coding 0.010000 0.477612 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-123 chr12 91346811 91347011 + -1.37809 NA intron (NM_181815, intron 7 of 25) L1_Mur3|LINE|L1 37498 NM_181815 75216 Mm.312204 NM_181815 ENSMUSG00000061533 Cep128 4930534B04Rik|5430424K18Rik|AI449708|AI480494|E230024F20 centrosomal protein 128 protein-coding 0.000000 0.328358 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-452 chr5 144411737 144411937 + -1.37999 NA Intergenic Intergenic 53312 NR_102372 100579137 NR_102372 ENSMUSG00000104600 Dmrt1i Dmr Dmrt1 interacting ncRNA ncRNA 0.015000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-113 chr1 69294498 69294698 + -1.38182 NA Intergenic Intergenic -186539 NM_010154 13869 Mm.442420 NM_010154 ENSMUSG00000062209 Erbb4 Her4|c-erbB-4 erb-b2 receptor tyrosine kinase 4 protein-coding 0.010000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2583 chr4 54440334 54440534 + -1.38182 NA Intergenic MTE2b|LTR|ERVL-MaLR -507511 NM_172867 242466 Mm.102904 NM_172867 ENSMUSG00000060206 Zfp462 6030417H05|9430078C22Rik|Gt4-2|Zfpip|Znf462 zinc finger protein 462 protein-coding 0.005000 0.393035 -78(GCTTTCTTATTTTTAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3380 chr8 77095835 77096035 + -1.38182 NA intron (NM_001083906, intron 3 of 8) intron (NM_001083906, intron 3 of 8) 193605 NM_001083906 110784 Mm.324393 NM_001083906 ENSMUSG00000031618 Nr3c2 MR|Mlr nuclear receptor subfamily 3, group C, member 2 protein-coding 0.000000 0.373134 -7(CAGTTATCATGAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2369 chr3 103241656 103241856 + -1.38182 NA Intergenic RMER15|LTR|ERVL -37537 NM_001079830 94093 Mm.195036 NM_053170 ENSMUSG00000033014 Trim33 8030451N04Rik|AI413936|Ecto|Tif1g tripartite motif-containing 33 protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-612 chr11 46987552 46987752 + -1.38182 NA intron (NM_011891, intron 6 of 7) intron (NM_011891, intron 6 of 7) 176853 NM_178759 276891 Mm.69002 NM_178759 ENSMUSG00000055546 Timd4 B430010N18Rik|TIM-4|Tim4 T cell immunoglobulin and mucin domain containing 4 protein-coding 0.000000 0.427861 45(CCTTTGTTATTCAGTT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-833 chr12 82918021 82918221 + -1.38182 NA intron (NM_015812, intron 2 of 16) intron (NM_015812, intron 2 of 16) 21034 NR_046045 74283 Mm.398247 NR_046045 ENSMUSG00000100890 1700085C21Rik - RIKEN cDNA 1700085C21 gene ncRNA 0.010000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-443 chr10 68705584 68705784 + -1.38182 NA Intergenic Intergenic -18062 NM_177794 327766 Mm.2479 NM_177794 ENSMUSG00000060044 Tmem26 3230401A06|AI195372 transmembrane protein 26 protein-coding 0.005000 0.412935 -68(TCTGACTCATGCAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1820 chr18 88594339 88594539 + -1.38182 NA Intergenic Intergenic 299768 NM_018821 54607 Mm.91920 NM_018821 ENSMUSG00000056153 Socs6 1500012M23Rik|5830401B18Rik|AI447482|Cis4|Cish4|HSPC060|SOCS-4|SOCS-6|SSI4|STAI4|STATI4|Socs4 suppressor of cytokine signaling 6 protein-coding 0.010000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2979 chr6 55245475 55245675 + -1.38182 NA intron (NM_177883, intron 5 of 10) intron (NM_177883, intron 5 of 10) 42192 NM_001142781 330323 Mm.268997 NM_177883 ENSMUSG00000038022 Mindy4 C330043M08Rik|Fam188b|Gm1406 MINDY lysine 48 deubiquitinase 4 protein-coding 0.015000 0.442786 22(GTTTTGTTTTGCAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2508 chr4 6174783 6174983 + -1.38182 NA Intergenic RCHARR1|DNA|hAT-Charlie -16222 NM_026534 68053 Mm.404043 NM_026534 ENSMUSG00000028243 Ubxn2b 3110003A22Rik|6430407D20Rik|AI451665|p37 UBX domain protein 2B protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3296 chr8 24292327 24292527 + -1.38182 NA Intergenic Intergenic 146519 NM_026931 69068 Mm.25775 NM_026931 ENSMUSG00000056313 Tcim 1110065B09Rik|1810011O10Rik|AW121743|AW321058 transcriptional and immune response regulator protein-coding 0.010000 0.388060 -51(AGTTACATGACAAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1862 chr19 26127723 26127923 + -1.38182 NA Intergenic L1MA10|LINE|L1 455412 NM_145831 226049 Mm.275572 NM_145831 ENSMUSG00000048138 Dmrt2 Terra doublesex and mab-3 related transcription factor 2 protein-coding 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3550 chr9 60989796 60989996 + -1.38182 NA Intergenic MTEa|LTR|ERVL-MaLR -27173 NR_040767 330956 Mm.207985 NR_040767 ENSMUSG00000111290 Gm5122 A430102L10 predicted gene 5122 ncRNA 0.010000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3064 chr6 120773303 120773503 + -1.38182 NA promoter-TSS (NM_001081048) promoter-TSS (NM_001081048) -365 NM_001081048 71803 Mm.425340 NM_001081048 ENSMUSG00000004902 Slc25a18 1500015I14Rik|AW125787 solute carrier family 25 (mitochondrial carrier), member 18 protein-coding 0.005000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-449 chr10 73060866 73061066 + -1.38182 NA intron (NR_040646, intron 1 of 4) ORR1C2|LTR|ERVL-MaLR 25739 NR_040646 327768 Mm.417745 NR_040646 ENSMUSG00000111994 A330049N07Rik - RIKEN cDNA A330049N07 gene ncRNA 0.005000 0.358209 -18(CCATTTTTATTCAAAC,+,0.00),4(ATGTAAAAAACAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3154 chr7 79208868 79209068 + -1.38182 NA Intergenic Intergenic -59908 NM_001045489 17304 Mm.1451 NM_008594 ENSMUSG00000030605 Mfge8 AA408458|AI325141|MFG-E8|MP47|Mfgm|P47|SED1|lactadherin milk fat globule-EGF factor 8 protein protein-coding 0.000000 0.398010 80(ATCTCAAAGATAAAGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-875 chr12 118753576 118753776 + -1.38182 NA Intergenic 7SK|RNA|RNA -92653 NM_177082 320145 Mm.51682 NM_177082 ENSMUSG00000048562 Sp8 D930049B17Rik|mBtd trans-acting transcription factor 8 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1785 chr18 63595391 63595591 + -1.38182 NA Intergenic MTE2b-int|LTR|ERVL-MaLR 96868 NM_016792 53382 Mm.19169 NM_016792 ENSMUSG00000024583 Txnl1 32kDa|TRP32|Txnl thioredoxin-like 1 protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-832 chr12 82664654 82664854 + -1.38182 NA intron (NM_015812, intron 2 of 16) intron (NM_015812, intron 2 of 16) 47255 NM_001282061 50779 Mm.126176 NM_015812 ENSMUSG00000021219 Rgs6 - regulator of G-protein signaling 6 protein-coding 0.005000 0.432836 -52(ATTTGAAAGCTAAATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-606 chr11 43586407 43586607 + -1.38182 NA 3' UTR (NM_001045530, exon 6 of 6) 3' UTR (NM_001045530, exon 6 of 6) 15055 NM_008375 16204 Mm.142716 NM_008375 ENSMUSG00000020405 Fabp6 GT|I-15P|I-BABP|ILBP|ILBP3|Illbp fatty acid binding protein 6 protein-coding 0.010000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2212 chr3 6992167 6992367 + -1.38747 NA Intergenic MTE-int|LTR|ERVL-MaLR -371824 NM_027048 69347 Mm.45822 NM_027048 ENSMUSG00000069118 1700008P02Rik - RIKEN cDNA 1700008P02 gene protein-coding 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3386 chr8 80815393 80815593 + -1.38769 NA intron (NM_021356, intron 1 of 9) intron (NM_021356, intron 1 of 9) 64986 NM_021356 14388 Mm.277409 NM_021356 ENSMUSG00000031714 Gab1 AA408973|AW107238 growth factor receptor bound protein 2-associated protein 1 protein-coding 0.025000 0.373134 -62(AAATGAATAACAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1645 chr17 77017120 77017320 + -1.38769 NA Intergenic Intergenic 1156197 NR_033456 100043885 Mm.127562 NR_033456 ENSMUSG00000117539 Gm4710 - predicted gene 4710 ncRNA 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1646 chr17 77017284 77017484 + -1.38769 NA Intergenic Intergenic 1156361 NR_033456 100043885 Mm.127562 NR_033456 ENSMUSG00000117539 Gm4710 - predicted gene 4710 ncRNA 0.000000 0.313433 82(GATAAATATTCATA,+,0.00),82(GATAAATATTCATA,-,0.00) 53(TGATTCTGTTTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1689 chr18 15721176 15721376 + -1.38769 NA intron (NM_199055, intron 1 of 4) intron (NM_199055, intron 1 of 4) 38881 NM_199055 71367 Mm.329304 NM_199055 ENSMUSG00000047161 Chst9 5430438D01Rik|GalNAc4ST-2|galNAc-4-ST2 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3114 chr7 51693169 51693369 + -1.38782 NA Intergenic LTR52|LTR|ERVL 68632 NM_001355150 140919 Mm.256618 NM_080853 ENSMUSG00000030500 Slc17a6 2900073D12Rik|DNPI|VGLUT2 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 protein-coding 0.000000 0.313433 -59(GTTTTATTTTGTAAAC,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-150 chr13 85791228 85791428 + -1.38782 NA Intergenic Lx|LINE|L1 255467 NM_007749 12867 Mm.378898 NM_007749 ENSMUSG00000017778 Cox7c COXVIIc|Cox7c1 cytochrome c oxidase subunit 7C protein-coding 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1182 chr14 93543898 93544098 + -1.38858 NA intron (NM_001271798, intron 2 of 3) intron (NM_001271798, intron 2 of 3) 346671 NM_001271799 211712 Mm.37126 NM_001081377 ENSMUSG00000055421 Pcdh9 - protocadherin 9 protein-coding 0.030000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1074 chr14 18498652 18498852 + -1.38877 NA Intergenic Intergenic -166908 NM_009455 22194 Mm.4429 NM_009455 ENSMUSG00000021774 Ube2e1 UbcM3|Ubce5|ubcM2 ubiquitin-conjugating enzyme E2E 1 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-109 chr1 67859493 67859693 + -1.38877 NA Intergenic Intergenic 736566 NM_001080809 227231 Mm.343942 NM_001080809 ENSMUSG00000025991 Cps1 4732433M03Rik|CPS|D1Ucla3 carbamoyl-phosphate synthetase 1 protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2911 chr5 146648710 146648910 + -1.38877 NA Intergenic Intergenic -63571 NM_001359056 14738 Mm.153539 NM_008151 ENSMUSG00000041468 Gpr12 Gpcr01|Gpcr12|Gpcr20|Gpcr21 G-protein coupled receptor 12 protein-coding 0.000000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-688 chr11 97826520 97826720 + -1.39113 NA intron (NM_010688, intron 4 of 6) intron (NM_010688, intron 4 of 6) -14486 NR_160861 68127 Mm.110270 NM_001080935 ENSMUSG00000050538 B230217C12Rik AI840637 RIKEN cDNA B230217C12 gene ncRNA 0.025000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2670 chr4 111756179 111756379 + -1.39113 NA intron (NM_026470, intron 3 of 12) intron (NM_026470, intron 3 of 12) -21318 NM_001357231 67946 Mm.275526 NM_026470 ENSMUSG00000034401 Spata6 1700062C23Rik|AI790763|Hash|KRP|Mash spermatogenesis associated 6 protein-coding 0.005000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2874 chr5 117396624 117396824 + -1.39113 NA Intergenic Intergenic -7701 NM_028128 72151 Mm.27997 NM_028128 ENSMUSG00000029363 Rfc5 2610020K06Rik|2610209F07Rik|36.5kDa|36kDa|Recc5 replication factor C (activator 1) 5 protein-coding 0.015000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2406 chr3 120236904 120237104 + -1.39113 NA Intergenic Intergenic -453616 NM_019550 56195 Mm.29966 NM_019550 ENSMUSG00000028134 Ptbp2 Ptb2|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 0.010000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-552 chr11 10940344 10940544 + -1.39113 NA Intergenic Lx7|LINE|L1 -173572 NM_177033 319922 Mm.337851 NM_177033 ENSMUSG00000050830 Vwc2 A930041G11Rik|G11|PSST739|UNQ739|cradin von Willebrand factor C domain containing 2 protein-coding 0.005000 0.313433 -64(ATATAAATGAAAAACT,-,0.00),-14(AATTACATCATAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1512 chr16 70255947 70256147 + -1.39113 NA Intergenic B1F|SINE|Alu -57902 NM_028803 74185 Mm.396102 NM_028803 ENSMUSG00000022707 Gbe1 2310045H19Rik|2810426P10Rik|D16Ertd536e glucan (1,4-alpha-), branching enzyme 1 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2578 chr4 52943170 52943370 + -1.39196 NA Intergenic Lx5|LINE|L1 -27359 NM_146607 258600 Mm.377586 NM_146607 ENSMUSG00000070983 Olfr270 MOR262-9 olfactory receptor 270 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1985 chr2 42307598 42307798 + -1.39370 NA intron (NM_053011, intron 2 of 90) intron (NM_053011, intron 2 of 90) 139870 NR_105754 102465171 NR_105754 ENSMUSG00000098660 Mir6336 Gm27584|mmu-mir-6336 microRNA 6336 ncRNA 0.010000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2527 chr4 20900619 20900819 + -1.39370 NA Intergenic L1_Mur3|LINE|L1 -122051 NM_001290410 269513 Mm.317473 NM_172987 ENSMUSG00000055761 Nkain3 C530048M05|E130310K16Rik Na+/K+ transporting ATPase interacting 3 protein-coding 0.010000 0.298507 -54(CTTTTGTTATGTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3696 chrX 52292666 52292866 + -1.39370 NA intron (NM_016697, intron 7 of 7) intron (NM_016697, intron 7 of 7) 85415 NR_105805 102465202 NR_105805 ENSMUSG00000105738 Mir6384 mmu-mir-6384 microRNA 6384 ncRNA 0.010000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2959 chr6 38698920 38699120 + -1.39370 NA intron (NM_001294144, intron 14 of 14) intron (NM_001294144, intron 14 of 14) 35951 NM_001101507 665180 Mm.349066 NM_001101507 ENSMUSG00000079598 Clec2l AI414054|AW122724|Gm1064 C-type lectin domain family 2, member L protein-coding 0.025000 0.611940 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2314 chr3 74319407 74319607 + -1.39370 NA Intergenic L1_Mur2|LINE|L1 -302230 NR_040450 100504692 Mm.394454 NR_040450 ENSMUSG00000104096 Gm20356 - predicted gene, 20356 ncRNA 0.000000 0.298507 10(GTTTTCATAACAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-602 chr11 41238117 41238317 + -1.39370 NA Intergenic Intergenic -482931 NM_009831 12450 Mm.2103 NM_009831 ENSMUSG00000020326 Ccng1 AI314029 cyclin G1 protein-coding 0.005000 0.353234 17(CTCTGAATGATAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-471 chr10 85082684 85082884 + -1.39370 NA Intergenic ERVB3_1-I_MM-int|LTR|ERVK 19711 NM_010214 14202 Mm.46163 NM_010214 ENSMUSG00000050035 Fhl4 - four and a half LIM domains 4 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3180 chr7 93261938 93262138 + -1.39370 NA Intergenic Intergenic -77862 NM_001358087 100040298 Mm.260904 NM_001358087 Gm15501 EyeLinc5 predicted pseudogene 15501 protein-coding 0.010000 0.303483 -34(AATTTCTTTTGAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2676 chr4 117243175 117243375 + -1.39370 NA intron (NM_001145637, intron 1 of 12) RSINE1|SINE|B4 8642 NM_001145637 381544 Mm.23504 NM_001033774 ENSMUSG00000060268 Armh1 1700012C08Rik|Gm1661|Gm1662|Ncrna00082 armadillo-like helical domain containing 1 protein-coding 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3587 chr9 82197976 82198176 + -1.39370 NA intron (NM_001357477, intron 4 of 4) intron (NM_001357477, intron 4 of 4) 334406 NM_001357477 75033 Mm.335329 NM_175213 ENSMUSG00000043289 Mei4 4930486G11Rik meiotic double-stranded break formation protein 4 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-516 chr10 111534277 111534477 + -1.39370 NA Intergenic Intergenic 28091 NM_009344 21664 Mm.3117 NM_009344 ENSMUSG00000020205 Phlda1 DT1P1B11|TDAG51|Tdag pleckstrin homology like domain, family A, member 1 protein-coding 0.015000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2238 chr3 30285951 30286151 + -1.39370 NA intron (NM_001361034, intron 1 of 16) intron (NM_001361034, intron 1 of 16) 223624 NM_021442 14013 Mm.56965 NM_007963 ENSMUSG00000027684 Mecom D630039M04Rik|Evi-1|Evi1|Jbo|Mds|Mds1|Mds1-Evi1|Prdm3|Znfpr1b1 MDS1 and EVI1 complex locus protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2623 chr4 83249766 83249966 + -1.39370 NA intron (NM_027238, intron 8 of 19) B3A|SINE|B2 74323 NM_027238 69863 Mm.5540 NM_025782 ENSMUSG00000038172 Ttc39b 1810054D07Rik|9130422G05Rik|AI450603|AV103077|AW215585 tetratricopeptide repeat domain 39B protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2534 chr4 25610603 25610803 + -1.39370 NA 3' UTR (NM_010243, exon 3 of 3) 3' UTR (NM_010243, exon 3 of 3) 189300 NM_010243 14348 Mm.39101 NM_010243 ENSMUSG00000055373 Fut9 AI746471|AU067636|mFUT9|mFuc-TIX fucosyltransferase 9 protein-coding 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1923 chr19 59248074 59248274 + -1.39370 NA Intergenic Intergenic -12704 NM_172523 214084 Mm.268797 NM_172523 ENSMUSG00000025094 Slc18a2 1110037L13Rik|9330105E13|Vmat2 solute carrier family 18 (vesicular monoamine), member 2 protein-coding 0.015000 0.552239 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2980 chr6 56063793 56063993 + -1.39370 NA Intergenic RLTR21|LTR|ERVK 46396 NM_011153 19051 Mm.42096 NM_011153 ENSMUSG00000002930 Ppp1r17 Gsbs|Ppp1r2 protein phosphatase 1, regulatory subunit 17 protein-coding 0.000000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3535 chr9 48413107 48413307 + -1.39370 NA Intergenic Intergenic -41137 NR_026561 667933 Mm.491076 NR_026561 Gm8884 EG667933 predicted gene 8884 ncRNA 0.010000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2052 chr2 91794851 91795051 + -1.39370 NA intron (NM_001080754, intron 8 of 18) intron (NM_001080754, intron 8 of 18) 64813 NM_001080754 228361 Mm.436667 NM_172669 ENSMUSG00000040506 Ambra1 2310079H06Rik|A130023A14|AA474864|AV021921|D030051N19Rik|mKIAA1736 autophagy/beclin 1 regulator 1 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2193 chr2 168670015 168670215 + -1.39370 NA intron (NM_001354978, intron 13 of 27) intron (NM_001354978, intron 13 of 27) -29356 NR_105971 102466784 NR_105971 ENSMUSG00000105496 Mir7004 mmu-mir-7004 microRNA 7004 ncRNA 0.040000 0.601990 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2045 chr2 80894188 80894388 + -1.39370 NA Intergenic Intergenic 255024 NM_001190179 69482 Mm.29200 NM_027091 ENSMUSG00000026999 Nup35 2310006I24Rik|35kDa|5330402E05Rik|MP44|NO44 nucleoporin 35 protein-coding 0.000000 0.238806 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-767 chr12 36262592 36262792 + -1.39370 NA Intergenic Intergenic -9294 NM_001361098 71156 Mm.250837 NM_027699 ENSMUSG00000020545 Lrrc72 1700108M19Rik|4933421E18Rik leucine rich repeat containing 72 protein-coding 0.010000 0.388060 11(TCTTTGTCATTTATAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1886 chr19 37669379 37669579 + -1.39370 NA intron (NM_175353, intron 20 of 21) intron (NM_175353, intron 20 of 21) -16201 NM_001105201 546726 Mm.457750 NM_001105201 ENSMUSG00000062432 Cyp26c1 EG546726 cytochrome P450, family 26, subfamily c, polypeptide 1 protein-coding 0.010000 0.462687 -58(TTATTTTGATGCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2918 chr6 6372538 6372738 + -1.39370 NA intron (NR_136905, intron 3 of 3) intron (NR_136905, intron 3 of 3) 123979 NR_136904 101056138 Mm.389085 NR_136904 ENSMUSG00000093482 Gm20619 - predicted gene 20619 ncRNA 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-785 chr12 46540193 46540393 + -1.39370 NA Intergenic Intergenic 278474 NM_001364637 664883 Mm.247195 NM_021361 ENSMUSG00000021047 Nova1 9430099M15Rik|G630039L02|Nova-1 neuro-oncological ventral antigen 1 protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1192 chr14 98580415 98580615 + -1.39521 NA Intergenic Intergenic -410750 NM_001038610 13134 Mm.320593 NM_007826 ENSMUSG00000055639 Dach1 Dac|Dach dachshund family transcription factor 1 protein-coding 0.015000 0.402985 -10(TCTTTATCATGCATCT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-882 chr13 5976230 5976430 + -1.39550 NA Intergenic Lx2B|LINE|L1 114841 NM_011803 23849 Mm.275036 NM_011803 ENSMUSG00000000078 Klf6 AI448727|BCD1|C86813|CPBP|Copeb|FM2|FM6|Ierepo1|Ierepo3|R75280|Zf9 Kruppel-like factor 6 protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-38 chr1 30289109 30289309 + -1.39550 NA Intergenic Intergenic -150373 NR_157037 102633704 NR_157037 Gm31465 - predicted gene, 31465 ncRNA 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1641 chr17 72653042 72653242 + -1.39550 NA Intergenic L1MC4|LINE|L1 -48835 NM_007439 11682 Mm.311854 NM_007439 ENSMUSG00000055471 Alk CD246|Tcrz anaplastic lymphoma kinase protein-coding 0.005000 0.353234 33(GGATTTTTATGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1007 chr13 92146821 92147021 + -1.39550 NA Intergenic RLTR13D4|LTR|ERVK -15093 NM_009027 19418 Mm.248630 NM_009027 ENSMUSG00000021708 Rasgrf2 6330417G04Rik|AW048350|Grf2|Ras-GRF2 RAS protein-specific guanine nucleotide-releasing factor 2 protein-coding 0.015000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1849 chr19 18776910 18777110 + -1.39550 NA intron (NR_157571, intron 3 of 38) 7SK|RNA|RNA 27280 NR_157571 225997 Mm.215171 NM_153417 ENSMUSG00000024727 Trpm6 CHAK2|TRPM6/CHAK2 transient receptor potential cation channel, subfamily M, member 6 protein-coding 0.005000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2956 chr6 36832348 36832548 + -1.39550 NA Intergenic Intergenic -22269 NM_008973 19242 Mm.279690 NM_008973 ENSMUSG00000029838 Ptn HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1 pleiotrophin protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3720 chrX 85924095 85924295 + -1.39550 NA Intergenic Intergenic 53922 NM_001163539 71398 Mm.185296 NM_001163539 ENSMUSG00000025058 5430427O19Rik - RIKEN cDNA 5430427O19 gene protein-coding 0.015000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1977 chr2 33555855 33556055 + -1.39550 NA Intergenic RMER1A|Other|Other 85143 NM_010725 16917 Mm.39825 NM_010725 ENSMUSG00000038765 Lmx1b Icst|LMX1.1|LMX1.2 LIM homeobox transcription factor 1 beta protein-coding 0.005000 0.641791 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-580 chr11 25641604 25641804 + -1.39550 NA intron (NR_027973, intron 4 of 5) intron (NR_027973, intron 4 of 5) 315597 NR_045853 71234 Mm.158627 NR_045853 ENSMUSG00000033015 4933427E13Rik - RIKEN cDNA 4933427E13 gene ncRNA 0.005000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1452 chr16 37291699 37291899 + -1.39550 NA intron (NM_172440, intron 5 of 27) intron (NM_172440, intron 5 of 27) 93159 NM_001114612 207227 Mm.80170 NM_172440 ENSMUSG00000022829 Stxbp5l 9430094L02|A830015P08Rik|LLGL4|T2dm1|t2md1|tomosyn-2 syntaxin binding protein 5-like protein-coding 0.000000 0.253731 -50(CTCAAAATGACAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2809 chr5 74433006 74433206 + -1.39550 NA intron (NM_001114660, intron 4 of 8) intron (NM_001114660, intron 4 of 8) 98636 NM_001286437 212986 Mm.134147 NM_178672 ENSMUSG00000062110 Scfd2 E430013M20Rik|STXBP1L1 Sec1 family domain containing 2 protein-coding 0.030000 0.457711 -48(CATTTGTAATGTTTAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-104 chr1 66247112 66247312 + -1.39550 NA intron (NM_008632, intron 2 of 13) intron (NM_008632, intron 2 of 13) 71883 NM_001039934 17756 Mm.256966 NM_008632 ENSMUSG00000015222 Map2 G1-397-34|MAP-2|Mtap-2|Mtap2|repro4 microtubule-associated protein 2 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2576 chr4 52052131 52052331 + -1.39550 NA Intergenic Intergenic -1121 NR_040668 329844 Mm.128934 NR_040668 ENSMUSG00000085515 C630028M04Rik - RIKEN cDNA C630028M04 gene ncRNA 0.010000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3394 chr8 84255942 84256142 + -1.39550 NA intron (NM_026423, intron 2 of 4) B3A|SINE|B2 1282 NM_026423 67873 Mm.278085 NM_026423 ENSMUSG00000004996 Mri1 2410018C20Rik methylthioribose-1-phosphate isomerase 1 protein-coding 0.005000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-51 chr1 34250086 34250286 + -1.39550 NA intron (NM_001276764, intron 65 of 102) intron (NM_001276764, intron 65 of 102) 89926 NM_010081 13518 Mm.336625 NM_010081 ENSMUSG00000026131 Dst 2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339 dystonin protein-coding 0.015000 0.343284 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-24 chr1 109812722 109812922 + -1.39678 NA Intergenic Intergenic -170078 NM_001316743 241201 Mm.213407 NM_172853 ENSMUSG00000026312 Cdh7 9330156F07Rik|CDH7L1 cadherin 7, type 2 protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-999 chr13 85791543 85791743 + -1.39997 NA Intergenic MIRb|SINE|MIR 255152 NM_007749 12867 Mm.378898 NM_007749 ENSMUSG00000017778 Cox7c COXVIIc|Cox7c1 cytochrome c oxidase subunit 7C protein-coding 0.010000 0.363184 -90(CTTTTCTTGTGTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3002 chr6 77479706 77479906 + -1.40036 NA intron (NM_145732, intron 8 of 18) intron (NM_145732, intron 8 of 18) -97331 NR_045141 70753 Mm.490700 NR_045141 ENSMUSG00000108077 6330415B21Rik - RIKEN cDNA 6330415B21 gene ncRNA 0.000000 0.378109 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-477 chr6 77479669 77479869 + -1.40036 NA intron (NM_145732, intron 8 of 18) intron (NM_145732, intron 8 of 18) -97294 NR_045141 70753 Mm.490700 NR_045141 ENSMUSG00000108077 6330415B21Rik - RIKEN cDNA 6330415B21 gene ncRNA 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-808 chr12 60574179 60574379 + -1.40037 NA Intergenic Lx2|LINE|L1 947541 NR_045049 100504101 Mm.235026 NR_045049 ENSMUSG00000113429 Gm20063 - predicted gene, 20063 ncRNA 0.000000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3158 chr7 82363627 82363827 + -1.40037 NA intron (NM_001190374, intron 2 of 29) L1M4|LINE|L1 28033 NM_001190374 269959 Mm.65306 NM_001190374 ENSMUSG00000070469 Adamtsl3 9230119C12Rik|C130057K09|mKIAA1233 ADAMTS-like 3 protein-coding 0.005000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1191 chr14 98580201 98580401 + -1.40102 NA Intergenic Intergenic -410536 NM_001038610 13134 Mm.320593 NM_007826 ENSMUSG00000055639 Dach1 Dac|Dach dachshund family transcription factor 1 protein-coding 0.015000 0.378109 -91(CATGCATATTAATA,+,0.00),-91(CATGCATATTAATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1791 chr18 67460935 67461135 + -1.40149 NA Intergenic Intergenic -3814 NM_144867 225655 Mm.221420 NM_144867 ENSMUSG00000024530 Prelid3a A230074A19Rik|BC019561|Slmo1 PRELI domain containing 3A protein-coding 0.015000 0.572139 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-74 chr10 97655028 97655228 + -1.40149 NA intron (NM_007884, intron 3 of 7) Charlie1a|DNA|hAT-Charlie 11060 NM_007884 13516 Mm.148886 NM_007884 ENSMUSG00000019936 Epyc Dspg3|PG-Lb|SLRR3B epiphycan protein-coding 0.015000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-576 chr11 25050218 25050418 + -1.40149 NA Intergenic Intergenic -275789 NR_045853 71234 Mm.158627 NR_045853 ENSMUSG00000033015 4933427E13Rik - RIKEN cDNA 4933427E13 gene ncRNA 0.000000 0.333333 19(CCATTGTGGTGCTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3633 chr9 102972380 102972580 + -1.40286 NA Intergenic Charlie13a|DNA|hAT-Charlie -36007 NR_157194 24059 Mm.207106 NM_033314 ENSMUSG00000032548 Slco2a1 2310021C19Rik|Pgt|Slc21a2 solute carrier organic anion transporter family, member 2a1 protein-coding 0.005000 0.452736 -30(ATTTTCTCATTCTTAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-107 chr1 67502741 67502941 + -1.40316 NA Intergenic ORR1C1|LTR|ERVL-MaLR 379814 NM_001080809 227231 Mm.343942 NM_001080809 ENSMUSG00000025991 Cps1 4732433M03Rik|CPS|D1Ucla3 carbamoyl-phosphate synthetase 1 protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1866 chr19 28490794 28490994 + -1.40316 NA intron (NM_175459, intron 4 of 10) intron (NM_175459, intron 4 of 10) -187330 NR_045330 320176 Mm.406716 NR_045330 ENSMUSG00000097735 D930032P07Rik - RIKEN cDNA D930032P07 gene ncRNA 0.015000 0.402985 -5(CCAGTATTATGCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-827 chr12 80154012 80154212 + -1.40316 NA Intergenic Intergenic -21268 NR_033514 69548 Mm.269712 NR_033514 2310015A10Rik 5330419I17Rik RIKEN cDNA 2310015A10 gene ncRNA 0.025000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2302 chr3 67564794 67564994 + -1.40316 NA Intergenic Intergenic -17874 NM_025813 66868 Mm.491153 NM_025813 ENSMUSG00000027775 Mfsd1 1200003O06Rik major facilitator superfamily domain containing 1 protein-coding 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1436 chr16 24883932 24884132 + -1.40316 NA intron (NM_178665, intron 9 of 12) L1_Mur3|LINE|L1 162177 NM_001145954 210126 Mm.209385 NM_178665 ENSMUSG00000033306 Lpp 9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16 LIM domain containing preferred translocation partner in lipoma protein-coding 0.005000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3174 chr7 90312492 90312692 + -1.40316 NA intron (NM_001368878, intron 1 of 19) intron (NM_001368878, intron 1 of 19) 10163 NM_001368878 83671 Mm.26751 NM_031394 ENSMUSG00000030616 Sytl2 AI266830|Slp2|mKIAA1597 synaptotagmin-like 2 protein-coding 0.015000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1347 chr15 68278550 68278750 + -1.40316 NA Intergenic Lx3_Mus|LINE|L1 -19794 NM_001145888 380993 Mm.309526 NM_198644 ENSMUSG00000022335 Zfat Gm922|Zfat1|Zfp406 zinc finger and AT hook domain containing protein-coding 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3203 chr7 111198753 111198953 + -1.40316 NA Intergenic Intergenic -76178 NR_015573 75479 Mm.381620 NR_015573 ENSMUSG00000110424 1700012D14Rik - RIKEN cDNA 1700012D14 gene ncRNA 0.015000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-586 chrX 168454181 168454381 + -1.40356 NA intron (NM_001033330, intron 2 of 19) URR1B|DNA|hAT-Charlie 122950 NM_001033330 333605 Mm.426168 NM_001033330 ENSMUSG00000049176 Frmpd4 Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso FERM and PDZ domain containing 4 protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1153 chr14 74072160 74072360 + -1.40356 NA Intergenic Lx10|LINE|L1 -283267 NR_046059 74425 Mm.399498 NR_046059 ENSMUSG00000115845 4933402J15Rik - RIKEN cDNA 4933402J15 gene ncRNA 0.010000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3772 chrX 168454154 168454354 + -1.40356 NA intron (NM_001033330, intron 2 of 19) URR1B|DNA|hAT-Charlie 122977 NM_001033330 333605 Mm.426168 NM_001033330 ENSMUSG00000049176 Frmpd4 Gm196|PKAP1|Pdzd10|Pdzk10|Preso1|preso FERM and PDZ domain containing 4 protein-coding 0.005000 0.318408 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-473 chr6 48587018 48587218 + -1.40395 NA Intergenic RMER1B|Other|Other -2327 NM_183309 330305 Mm.123868 NM_183309 Gm5111 A630038D02|EG330305 predicted gene 5111 protein-coding 0.015000 0.482587 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-420 chr5 3889210 3889410 + -1.40639 NA Intergenic B2_Mm2|SINE|B2 4623 NM_001013023 545725 Mm.99593 NM_172135 ENSMUSG00000040429 Mterf1a 4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b mitochondrial transcription termination factor 1a protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-316 chr1 189225940 189226140 + -1.40702 NA intron (NM_001281847, intron 6 of 6) intron (NM_001281847, intron 6 of 6) 117313 NM_001357119 16526 Mm.33304 NM_010607 ENSMUSG00000037624 Kcnk2 A430027H14Rik|AI848635|TREK-1 potassium channel, subfamily K, member 2 protein-coding 0.000000 0.253731 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1803 chr18 76069611 76069811 + -1.40702 NA intron (NM_001357506, intron 1 of 2) intron (NM_001357506, intron 1 of 2) 10385 NM_001357506 207259 Mm.159332 NM_145356 ENSMUSG00000044646 Zbtb7c B230208J24Rik|Kr-pok|Zbtb36 zinc finger and BTB domain containing 7C protein-coding 0.020000 0.472637 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-22 chr1 105701410 105701610 + -1.40702 NA intron (NM_173187, intron 10 of 28) intron (NM_173187, intron 10 of 28) 37649 NM_029349 227446 Mm.337339 NM_029349 ENSMUSG00000026319 Relch 2310035C23Rik|6430401N10|Kiaa1468|mKIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 0.000000 0.363184 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-322 chr2 81803711 81803911 + -1.40702 NA Intergenic Intergenic -249847 NM_175513 241514 Mm.119383 NM_175513 ENSMUSG00000070866 Zfp804a C630007C17Rik|Znf804a zinc finger protein 804A protein-coding 0.010000 0.363184 35(GATGAATATGTATA,+,0.00),35(GATGAATATGTATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1291 chr15 34693695 34693895 + -1.40702 NA Intergenic Intergenic -15089 NM_145469 223473 Mm.258402 NM_145469 ENSMUSG00000038879 Nipal2 9330161F08Rik|Npal2 NIPA-like domain containing 2 protein-coding 0.015000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2802 chr5 71248459 71248659 + -1.41041 NA Intergenic Intergenic -152710 NM_008066 14395 Mm.5304 NM_008066 ENSMUSG00000000560 Gabra2 C630048P16Rik|Gabra-2 gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2 protein-coding 0.000000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-437 chr5 71248444 71248644 + -1.41041 NA Intergenic Intergenic -152695 NM_008066 14395 Mm.5304 NM_008066 ENSMUSG00000000560 Gabra2 C630048P16Rik|Gabra-2 gamma-aminobutyric acid (GABA) A receptor, subunit alpha 2 protein-coding 0.000000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-459 chr6 11581894 11582094 + -1.41096 NA Intergenic Intergenic 325456 NM_010886 17992 Mm.415865 NM_010886 ENSMUSG00000029632 Ndufa4 MLRQ Ndufa4, mitochondrial complex associated protein-coding 0.005000 0.383085 44(TCATTGTTATGGATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2923 chr6 11581918 11582118 + -1.41096 NA Intergenic Intergenic 325432 NM_010886 17992 Mm.415865 NM_010886 ENSMUSG00000029632 Ndufa4 MLRQ Ndufa4, mitochondrial complex associated protein-coding 0.005000 0.368159 20(TCATTGTTATGGATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3433 chr8 109445957 109446157 + -1.41096 NA Intergenic Intergenic -47970 NM_019938 56523 Mm.42166 NM_019938 ENSMUSG00000031727 Pmfbp1 1700016D22Rik|F77|Stap polyamine modulated factor 1 binding protein 1 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3137 chr7 72203126 72203326 + -1.41113 NA intron (NM_001024703, intron 10 of 22) intron (NM_001024703, intron 10 of 22) 103369 NM_001024703 244049 Mm.217412 NM_001024703 ENSMUSG00000032776 Mctp2 Gm489 multiple C2 domains, transmembrane 2 protein-coding 0.005000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-178 chr1 104711117 104711317 + -1.41153 NA Intergenic Lx5c|LINE|L1 -57303 NM_011800 23836 Mm.103640 NM_011800 ENSMUSG00000050840 Cdh20 Cdh7 cadherin 20 protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-998 chr13 85791224 85791424 + -1.41223 NA Intergenic L1Md_F2|LINE|L1 255471 NM_007749 12867 Mm.378898 NM_007749 ENSMUSG00000017778 Cox7c COXVIIc|Cox7c1 cytochrome c oxidase subunit 7C protein-coding 0.000000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-740 chr12 16298340 16298540 + -1.41256 NA Intergenic Intergenic 291330 NM_172950 14245 Mm.153625 NM_015763 ENSMUSG00000020593 Lpin1 Lipin1|fld lipin 1 protein-coding 0.000000 0.398010 36(CATTCCTAATGCATT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-518 chr8 44370056 44370256 + -1.41256 NA Intergenic L1M5|LINE|L1 -580052 NM_001081286 14107 Mm.27365 NM_001081286 ENSMUSG00000070047 Fat1 2310038E12Rik|AU023433|Fath|mFat1 FAT atypical cadherin 1 protein-coding 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-147 chr1 82093953 82094153 + -1.41256 NA Intergenic Intergenic -37863 NR_105762 102466629 NR_105762 ENSMUSG00000098797 Mir6344 Gm27840|mmu-mir-6344 microRNA 6344 ncRNA 0.025000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2854 chr5 101104330 101104530 + -1.41256 NA Intergenic Intergenic 258201 NM_172715 231510 Mm.271911 NM_172715 ENSMUSG00000029314 Gpat3 1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3 glycerol-3-phosphate acyltransferase 3 protein-coding 0.015000 0.393035 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-226 chr16 52042760 52042960 + -1.41408 NA intron (NM_001033238, intron 2 of 17) intron (NM_001033238, intron 2 of 17) 11311 NM_001033238 208650 Mm.328206 NM_001033238 ENSMUSG00000022637 Cblb AI429560|AI851073|Cbl-b Casitas B-lineage lymphoma b protein-coding 0.025000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-358 chr10 20409159 20409359 + -1.41657 NA intron (NM_001347366, intron 10 of 11) intron (NM_001347366, intron 10 of 11) 61440 NM_027930 71804 Mm.262151 NM_027930 ENSMUSG00000019992 Mtfr2 2610016C23Rik|4933412C16Rik|Dufd1|Fam54a mitochondrial fission regulator 2 protein-coding 0.030000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1946 chr2 11486305 11486505 + -1.41657 NA intron (NM_001177755, intron 6 of 15) intron (NM_001177755, intron 6 of 15) 15685 NM_133232 170768 Mm.19669 NM_133232 ENSMUSG00000026773 Pfkfb3 E330010H22Rik|iPFK-2|uPFK-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 0.010000 0.437811 70(ATTAAAAAAAGAAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2216 chr3 12065623 12065823 + -1.41657 NA Intergenic Intergenic -221364 NR_040751 100038545 Mm.388494 NR_040751 ENSMUSG00000104015 Gm10745 - predicted gene 10745 ncRNA 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-856 chr12 100063181 100063381 + -1.41657 NA TTS (NM_146037) TTS (NM_146037) -49050 NM_008947 19179 Mm.157105 NM_008947 ENSMUSG00000021178 Psmc1 AI325227|P26s4|Rpt2/S4|S4|rpt2 protease (prosome, macropain) 26S subunit, ATPase 1 protein-coding 0.000000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-464 chr10 83803793 83803993 + -1.41657 NA Intergenic Intergenic 81028 NM_001145198 69784 Mm.271188 NM_001145198 ENSMUSG00000087651 1500009L16Rik 2700050C19Rik|OCC-1 RIKEN cDNA 1500009L16 gene protein-coding 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3178 chr7 92884057 92884257 + -1.41657 NA intron (NM_028243, intron 1 of 8) intron (NM_028243, intron 1 of 8) 8904 NM_028243 72461 Mm.389969 NM_028243 ENSMUSG00000061119 Prcp 2510048K03Rik|2610104A14Rik|AI451719|HUMPCP|PCP prolylcarboxypeptidase (angiotensinase C) protein-coding 0.000000 0.432836 -56(CCTTTATCATTCTCAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1158 chr14 78061395 78061595 + -1.41657 NA Intergenic Intergenic 27512 NM_177629 219170 Mm.320428 NM_177629 ENSMUSG00000045655 Fam216b 9330158N17|AU021034 family with sequence similarity 216, member B protein-coding 0.000000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1006 chr13 92104558 92104758 + -1.41657 NA intron (NM_009027, intron 1 of 23) intron (NM_009027, intron 1 of 23) 27170 NM_009027 19418 Mm.248630 NM_009027 ENSMUSG00000021708 Rasgrf2 6330417G04Rik|AW048350|Grf2|Ras-GRF2 RAS protein-specific guanine nucleotide-releasing factor 2 protein-coding 0.010000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1930 chr2 5371597 5371797 + -1.41657 NA intron (NM_001290374, intron 2 of 9) intron (NM_001290374, intron 2 of 9) -7693 NR_030601 100124465 NR_030601 ENSMUSG00000078031 Mir466d Mirn466d microRNA 466d ncRNA 0.010000 0.398010 67(AGTGCATATGCATT,+,0.00),67(AGTGCATATGCATT,-,0.00) 78(ATTTACATAAACAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-719 chr12 4066813 4067013 + -1.41657 NA Intergenic Intergenic -15661 NM_153082 217378 Mm.271656 NM_153082 ENSMUSG00000020657 Dnajc27 AI639580|C330021A05Rik|Rabj|Rbj DnaJ heat shock protein family (Hsp40) member C27 protein-coding 0.005000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1777 chr18 58826617 58826817 + -1.41657 NA Intergenic Lx5c|LINE|L1 -9646 NM_175506 240322 Mm.71963 NM_175506 ENSMUSG00000053441 Adamts19 4831407I23Rik|AU015154|D230034E10Rik a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 19 protein-coding 0.005000 0.452736 -85(CCATTTTCATTCAGAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2699 chr4 137540500 137540700 + -1.41657 NA intron (NM_008305, intron 49 of 96) intron (NM_008305, intron 49 of 96) 2314 NR_105985 102465616 NR_105985 ENSMUSG00000099134 Mir7018 Gm27606|mmu-mir-7018 microRNA 7018 ncRNA 0.035000 0.616915 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-307 chr1 185612753 185612953 + -1.41657 NA intron (NR_030555, intron 4 of 6) L1ME1|LINE|L1 75517 NR_030555 100124483 NR_030555 ENSMUSG00000076976 Mir297c Mirn297c microRNA 297c ncRNA 0.025000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2731 chr5 14471687 14471887 + -1.41657 NA Intergenic Intergenic -43131 NM_001110796 26875 Mm.146275 NM_011995 ENSMUSG00000061601 Pclo Acz|Pico piccolo (presynaptic cytomatrix protein) protein-coding 0.010000 0.318408 38(CTTTTCATGAAAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2770 chr5 46429958 46430158 + -1.41657 NA Intergenic L1Md_F2|LINE|L1 -497649 NR_110478 78106 Mm.243807 NR_110478 ENSMUSG00000106602 4930405L22Rik - RIKEN cDNA 4930405L22 gene ncRNA 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-862 chr12 103142583 103142783 + -1.41657 NA exon (NM_001081017, exon 38 of 49) exon (NM_001081017, exon 38 of 49) 99463 NM_133364 170952 Mm.217019 NM_133364 ENSMUSG00000041669 Prima1 B230212M13Rik|BB120497|PRiMA proline rich membrane anchor 1 protein-coding 0.010000 0.437811 -95(GTCTAAATAACAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2032 chr2 67884702 67884902 + -1.41657 NA Intergenic Intergenic 103759 NR_105752 102466627 NR_105752 ENSMUSG00000098734 Mir6335 Gm27836|mmu-mir-6335 microRNA 6335 ncRNA 0.000000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3543 chr9 53890213 53890413 + -1.41657 NA Intergenic Intergenic 40062 NM_025540 66402 Mm.29132 NM_025540 ENSMUSG00000042045 Sln 2310045A07Rik sarcolipin protein-coding 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-620 chr11 52521977 52522177 + -1.41657 NA Intergenic Intergenic 125649 NM_153117 213673 Mm.291979 NM_153117 ENSMUSG00000036275 9530068E07Rik C85061|Kct2 RIKEN cDNA 9530068E07 gene protein-coding 0.005000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2949 chr6 30937456 30937656 + -1.41657 NA Intergenic Intergenic 21434 NM_001135093 619665 Mm.204671 NM_001135093 ENSMUSG00000073209 Klf14 5330411L03Rik|AL022736|BTEB5 Kruppel-like factor 14 protein-coding 0.000000 0.378109 3(CTTTGTAAGAGAAATG,-,0.00),24(ATTTACATGTCTAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2429 chr3 125226884 125227084 + -1.41694 NA Intergenic Lx7|LINE|L1 -177107 NM_022565 64580 Mm.444289 NM_022565 ENSMUSG00000027971 Ndst4 4930439H17Rik N-deacetylase/N-sulfotransferase (heparin glucosaminyl) 4 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1992 chr2 45693839 45694039 + -1.41694 NA Intergenic Intergenic -2666 NR_040497 69405 Mm.396184 NR_040497 ENSMUSG00000086202 1700019E08Rik - RIKEN cDNA 1700019E08 gene ncRNA 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-451 chr10 74419255 74419455 + -1.41694 NA intron (NM_001142747, intron 19 of 26) RLTR22_Mur|LTR|ERVK -547822 NM_010311 14687 Mm.32595 NM_010311 ENSMUSG00000040009 Gnaz AI847979|Gz guanine nucleotide binding protein, alpha z subunit protein-coding 0.005000 0.373134 72(ACTGCATATGTATC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-499 chr10 102881193 102881393 + -1.41694 NA Intergenic (CAAAA)n|Simple_repeat|Simple_repeat 147484 NM_172553 216285 Mm.19287 NM_172553 ENSMUSG00000036602 Alx1 AI314867|C130005I02|Cart1 ALX homeobox 1 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1043 chr13 114496716 114496916 + -1.41694 NA Intergenic Lx3B|LINE|L1 -37865 NM_001301375 14313 Mm.4913 NM_008046 ENSMUSG00000021765 Fst AL033346|FS follistatin protein-coding 0.005000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1694 chr18 18610788 18610988 + -1.41816 NA Intergenic RLTR13G|LTR|ERVK -1029898 NR_045374 75162 Mm.60874 NR_045374 ENSMUSG00000117615 4930545E07Rik - RIKEN cDNA 4930545E07 gene ncRNA 0.010000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1739 chr18 40233374 40233574 + -1.41816 NA Intergenic RLTR13G|LTR|ERVK -14075 NM_023311 67180 Mm.270382 NM_023311 ENSMUSG00000024487 Yipf5 2610311I19Rik|AA408236|Yip1a Yip1 domain family, member 5 protein-coding 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-627 chr11 56957688 56957888 + -1.41816 NA Intergenic Intergenic -53830 NM_008165 14799 Mm.4920 NM_008165 ENSMUSG00000020524 Gria1 2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1 glutamate receptor, ionotropic, AMPA1 (alpha 1) protein-coding 0.015000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2249 chr3 42900907 42901107 + -1.41816 NA Intergenic Intergenic 1158389 NM_028667 73852 Mm.29006 NM_027271 ENSMUSG00000025766 D3Ertd751e 2810009O15Rik|4930415G15Rik DNA segment, Chr 3, ERATO Doi 751, expressed protein-coding 0.005000 0.343284 -93(TATACATATGCATA,+,0.00),-93(TATACATATGCATA,-,0.00),-87(TATGCATATGTATA,+,0.00),-87(TATGCATATGTATA,-,0.00),-64(TATGTATATGCACA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2229 chr3 23212281 23212481 + -1.41816 NA Intergenic Lx10|LINE|L1 961011 NR_004439 19784 NR_004439 Rprl2 RPRH3|Rmrp3 ribonuclease P RNA-like 2 ncRNA 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2989 chr6 66786730 66786930 + -1.41816 NA Intergenic Intergenic -9700 NM_134168 171186 Mm.377167 NM_134168 ENSMUSG00000115170 Vmn1r38 V1rc13 vomeronasal 1 receptor 38 protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2859 chr5 104382477 104382677 + -1.41816 NA Intergenic Lx8|LINE|L1 -52534 NM_001204203 20750 Mm.288474 NM_009263 ENSMUSG00000029304 Spp1 2AR|Apl-1|BNSP|BSPI|Bsp|ETA-1|Eta|OP|Opn|Opnl|Ric|Spp-1 secreted phosphoprotein 1 protein-coding 0.005000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1156 chr14 76829098 76829298 + -1.41816 NA Intergenic Intergenic 69067 NR_153763 73883 Mm.489041 NR_153763 4930431P22Rik - RIKEN cDNA 4930431P22 gene ncRNA 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2635 chr4 89682436 89682636 + -1.41816 NA Intergenic Intergenic -5662 NM_175647 242523 Mm.130167 NM_175647 ENSMUSG00000043753 Dmrta1 Dmrt4 doublesex and mab-3 related transcription factor like family A1 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3102 chr7 34764941 34765141 + -1.41816 NA intron (NM_175140, intron 1 of 3) intron (NM_175140, intron 1 of 3) 47670 NM_175140 68947 Mm.29380 NM_175140 ENSMUSG00000060402 Chst8 1500011J21Rik|AI426009 carbohydrate sulfotransferase 8 protein-coding 0.020000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-66 chr1 45767561 45767761 + -1.41816 NA Intergenic Intergenic -27505 NM_028599 73674 Mm.270376 NM_028599 ENSMUSG00000025995 Wdr75 1300003A18Rik|2410118I19Rik|C77608 WD repeat domain 75 protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2342 chr3 88704215 88704415 + -1.41816 NA intron (NR_151825, intron 10 of 12) RLTR18-int|LTR|ERVK -12539 NM_001163310 19769 Mm.4009 NM_009069 ENSMUSG00000028057 Rit1 RIBB|ROC1|Rit Ras-like without CAAX 1 protein-coding 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-137 chr1 79348633 79348833 + -1.41816 NA Intergenic Intergenic 91293 NM_001310680 20254 Mm.5038 NM_009129 ENSMUSG00000050711 Scg2 Chgc|SgII secretogranin II protein-coding 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1528 chr16 79142450 79142650 + -1.41816 NA Intergenic Lx5b|LINE|L1 -51453 NM_178855 19146 Mm.5184 NM_008941 ENSMUSG00000022857 Tmprss15 Entk|Prss7 transmembrane protease, serine 15 protein-coding 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2069 chr2 102469771 102469971 + -1.41816 NA Intergenic Intergenic -18079 NM_010218 14221 Mm.29730 NM_010218 ENSMUSG00000075012 Fjx1 - four jointed box 1 protein-coding 0.000000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1309 chr15 48616348 48616548 + -1.41816 NA intron (NM_001081391, intron 3 of 70) intron (NM_001081391, intron 3 of 70) 175541 NM_001081391 239420 Mm.309363 NM_001081391 ENSMUSG00000022311 Csmd3 4930500N14Rik|mKIAA1894 CUB and Sushi multiple domains 3 protein-coding 0.005000 0.298507 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-456 chr10 77268866 77269066 + -1.41816 NA 3' UTR (NM_030262, exon 9 of 9) 3' UTR (NM_030262, exon 9 of 9) 9666 NM_030262 80294 Mm.203556 NM_030262 ENSMUSG00000020260 Pofut2 2310011G23Rik|AI256847|BC003494|C21orf80|FUT13 protein O-fucosyltransferase 2 protein-coding 0.025000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1206 chr14 110602083 110602283 + -1.41816 NA Intergenic Intergenic 152966 NM_175499 239250 Mm.49728 NM_175499 ENSMUSG00000045871 Slitrk6 4832410J21Rik|Sltk6 SLIT and NTRK-like family, member 6 protein-coding 0.010000 0.388060 63(CTTTGCATAACAACTC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1198 chr14 103929206 103929406 + -1.41816 NA Intergenic RLTR17B_Mm|LTR|ERVK -84830 NM_001136061 13618 Mm.229532 NM_007904 ENSMUSG00000022122 Ednrb ET-B|ET-BR|ETR-b|ETb|Sox10m1 endothelin receptor type B protein-coding 0.010000 0.422886 -31(TATACATAATGTATA,+,0.00),-31(TATACATAATGTATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2808 chr5 73570005 73570205 + -1.41816 NA Intergenic L1MEg|LINE|L1 62316 NM_153568 231296 Mm.168948 NM_153568 ENSMUSG00000067206 Lrrc66 - leucine rich repeat containing 66 protein-coding 0.015000 0.318408 -76(TAATTGTAATGATAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2974 chr6 48586988 48587188 + -1.41975 NA Intergenic RMER1B|Other|Other -2357 NM_183309 330305 Mm.123868 NM_183309 Gm5111 A630038D02|EG330305 predicted gene 5111 protein-coding 0.010000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2321 chr3 77058597 77058797 + -1.41983 NA Intergenic Intergenic 983114 NM_001253719 213262 Mm.379337 NM_178673 ENSMUSG00000034098 Fstl5 9130207J01Rik follistatin-like 5 protein-coding 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2323 chr3 77483621 77483821 + -1.42013 NA Intergenic Lx3_Mus|LINE|L1 1408138 NM_001253719 213262 Mm.379337 NM_178673 ENSMUSG00000034098 Fstl5 9130207J01Rik follistatin-like 5 protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2602 chr4 70192083 70192283 + -1.42122 NA Intergenic Intergenic 218252 NM_001313762 214444 Mm.370777 NM_145990 ENSMUSG00000039298 Cdk5rap2 2900018K03Rik|an|mKIAA1633 CDK5 regulatory subunit associated protein 2 protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2862 chr5 106295836 106296036 + -1.42122 NA Intergenic Intergenic -25404 NR_136913 102635633 Mm.383511 NR_136913 ENSMUSG00000105508 Gm32921 - predicted gene, 32921 ncRNA 0.000000 0.398010 44(ACATTGTCATTAAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1450 chr16 36675343 36675543 + -1.42122 NA Intergenic Intergenic -9366 NM_019388 12524 Mm.1452 NM_019388 ENSMUSG00000022901 Cd86 B7|B7-2|B7.2|B70|CLS1|Cd28l2|ETC-1|Ly-58|Ly58|MB7|MB7-2|TS/A-2 CD86 antigen protein-coding 0.010000 0.477612 -72(AACTACATGACAAAAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2682 chr4 120188561 120188761 + -1.42122 NA Intergenic Intergenic 27455 NM_007902 13615 Mm.284855 NM_007902 ENSMUSG00000028635 Edn2 ET-2|PPET2|VIC endothelin 2 protein-coding 0.015000 0.477612 2(ATATGAATGAACAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3575 chr9 78860933 78861133 + -1.42122 NA Intergenic Intergenic 245487 NM_153098 235505 Mm.32955 NM_153098 ENSMUSG00000046186 Cd109 9930012E15Rik|AI480638|GARP CD109 antigen protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2322 chr3 77483359 77483559 + -1.42126 NA Intergenic Intergenic 1407876 NM_001253719 213262 Mm.379337 NM_178673 ENSMUSG00000034098 Fstl5 9130207J01Rik follistatin-like 5 protein-coding 0.000000 0.298507 -40(TTGTTCTTTTTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1355 chr15 77206958 77207158 + -1.42135 NA intron (NM_175387, intron 2 of 12) intron (NM_175387, intron 2 of 12) 38550 NM_001358772 93686 Mm.202774 NM_053104 ENSMUSG00000033565 Rbfox2 Fbm2|Fxh|Hrnbp2|Rbm9 RNA binding protein, fox-1 homolog (C. elegans) 2 protein-coding 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2807 chr5 72732336 72732536 + -1.42135 NA intron (NM_013698, intron 3 of 13) intron (NM_013698, intron 3 of 13) 4166 NM_013698 22165 Mm.3264 NM_013698 ENSMUSG00000054892 Txk A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk TXK tyrosine kinase protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3201 chr7 110715739 110715939 + -1.42135 NA Intergenic Intergenic -52367 NM_001276301 11717 Mm.3238 NM_009667 ENSMUSG00000005686 Ampd3 - adenosine monophosphate deaminase 3 protein-coding 0.020000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1178 chr14 91549653 91549853 + -1.42135 NA Intergenic Intergenic 1422862 NR_045712 74967 Mm.390704 NR_045712 ENSMUSG00000115001 4930474H20Rik - RIKEN cDNA 4930474H20 gene ncRNA 0.005000 0.333333 57(CTTCAGTTATTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3583 chr9 81538508 81538708 + -1.42135 NA Intergenic Intergenic -93322 NR_040395 319405 Mm.246494 NR_040393 ENSMUSG00000097466 D430036J16Rik - RIKEN cDNA D430036J16 gene ncRNA 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2446 chr3 133491479 133491679 + -1.42135 NA intron (NM_001040400, intron 2 of 10) intron (NM_001040400, intron 2 of 10) 52811 NM_001346736 214133 Mm.347816 NM_145989 ENSMUSG00000040943 Tet2 Ayu17-449|E130014J05Rik|mKIAA1546 tet methylcytosine dioxygenase 2 protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2532 chr4 24753558 24753758 + -1.42135 NA intron (NM_001033531, intron 3 of 9) intron (NM_001033531, intron 3 of 9) 97466 NM_001355618 212390 Mm.409581 NM_001033531 ENSMUSG00000040387 Klhl32 6430524H05Rik|D4Ertd389e|Gm1356|mKIAA1900 kelch-like 32 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2915 chr6 5791476 5791676 + -1.42135 NA intron (NM_010063, intron 5 of 16) ORR1B1|LTR|ERVL-MaLR 65937 NM_001191023 13426 Mm.20893 NM_010063 ENSMUSG00000029757 Dync1i1 DH IC-1|DHIC-1|DIC|Dncic1|IC74 dynein cytoplasmic 1 intermediate chain 1 protein-coding 0.010000 0.422886 -29(ATTTACATTACAAGAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-716 chr11 118916779 118916979 + -1.42135 NA Intergenic Intergenic -5282 NM_001285437 52897 Mm.341103 NM_001024931 ENSMUSG00000025576 Rbfox3 Fox-3|Hrnbp3|NeuN|Neuna60 RNA binding protein, fox-1 homolog (C. elegans) 3 protein-coding 0.020000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1259 chr15 15981179 15981379 + -1.42135 NA Intergenic Intergenic -747636 NM_009869 12565 Mm.439758 NM_009869 ENSMUSG00000025370 Cdh9 - cadherin 9 protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-644 chr11 64753202 64753402 + -1.42135 NA Intergenic Intergenic -225733 NM_023479 68626 Mm.157711 NM_023479 ENSMUSG00000020549 Elac2 1110017O07Rik|D11Wsu80e|Hpc2 elaC ribonuclease Z 2 protein-coding 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-257 chr1 150862809 150863009 + -1.42135 NA intron (NM_001024720, intron 2 of 106) intron (NM_001024720, intron 2 of 106) 130526 NM_001024720 545370 Mm.379425 NM_001024720 ENSMUSG00000066842 Hmcn1 EG545370|FIBL-6|Gm201 hemicentin 1 protein-coding 0.010000 0.343284 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-542 chr8 113761220 113761420 + -1.42153 NA intron (NM_172466, intron 10 of 22) intron (NM_172466, intron 10 of 22) -84862 NR_136914 102631810 Mm.412563 NR_136914 ENSMUSG00000110582 Gm30052 - predicted gene, 30052 ncRNA 0.010000 0.447761 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-521 chr8 45448234 45448434 + -1.42153 NA Intergenic Intergenic -37715 NM_001357317 142980 Mm.33874 NM_126166 ENSMUSG00000031639 Tlr3 AI957183 toll-like receptor 3 protein-coding 0.010000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3445 chr8 113761185 113761385 + -1.42153 NA intron (NM_172466, intron 10 of 22) intron (NM_172466, intron 10 of 22) -84827 NR_136914 102631810 Mm.412563 NR_136914 ENSMUSG00000110582 Gm30052 - predicted gene, 30052 ncRNA 0.010000 0.457711 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-206 chr15 53171165 53171365 + -1.42319 NA intron (NM_010162, intron 1 of 10) intron (NM_010162, intron 1 of 10) 174918 NM_010162 14042 Mm.309395 NM_010162 ENSMUSG00000061731 Ext1 AA409028 exostoses (multiple) 1 protein-coding 0.005000 0.477612 -48(AATCCATGATTCATG,+,0.00),-48(AATCCATGATTCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2097 chr2 113758756 113758956 + -1.42319 NA promoter-TSS (NM_011824) promoter-TSS (NM_011824) -208 NM_011824 23892 Mm.166318 NM_011824 ENSMUSG00000074934 Grem1 Cktsf1b1|Drm|Grem|ld gremlin 1, DAN family BMP antagonist protein-coding 0.060000 0.676617 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-924 chr13 26358622 26358822 + -1.42562 NA Intergenic Lx7|LINE|L1 -46316 NR_045933 73576 Mm.45473 NR_045933 ENSMUSG00000084811 1700092E19Rik - RIKEN cDNA 1700092E19 gene ncRNA 0.000000 0.338308 -95(TGTGAATTATTTATT,+,0.00),-95(TGTGAATTATTTATT,-,0.00) 80(ATATTGTTTTGGAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3019 chr6 88776631 88776831 + -1.42759 NA intron (NM_001166249, intron 3 of 7) intron (NM_001166249, intron 3 of 7) 52027 NM_001166250 23945 Mm.272197 NM_011844 ENSMUSG00000033174 Mgll AA589436|Magl|Mgl monoglyceride lipase protein-coding 0.035000 0.582090 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-763 chr12 34350164 34350364 + -1.42759 NA intron (NM_001271386, intron 14 of 27) intron (NM_001271386, intron 14 of 27) 178625 NM_024124 79221 Mm.310551 NM_024124 ENSMUSG00000004698 Hdac9 AV022454|D030072B18Rik|HD7B|HD9|HDRP|Hdac7b|Mitr|mKIAA0744 histone deacetylase 9 protein-coding 0.005000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1033 chr13 108693567 108693767 + -1.42759 NA intron (NM_011056, intron 1 of 16) intron (NM_011056, intron 1 of 16) 39490 NM_011056 238871 Mm.434429 NM_011056 ENSMUSG00000021699 Pde4d 9630011N22Rik|Dpde3 phosphodiesterase 4D, cAMP specific protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2243 chr3 33779282 33779482 + -1.42759 NA Intergenic ORR1D1-int|LTR|ERVL-MaLR -20801 NM_027619 67120 Mm.275710 NM_025978 ENSMUSG00000027677 Ttc14 2700016E08Rik|4930434D01Rik|4931403I22Rik|4933402I15Rik|AI662468|AU014779|AW561908|cI-44|mKIAA1980 tetratricopeptide repeat domain 14 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2301 chr3 67510579 67510779 + -1.42759 NA intron (NM_001164763, intron 1 of 5) intron (NM_001164763, intron 1 of 5) 4844 NM_001164763 109222 Mm.38002 NM_001164763 ENSMUSG00000049404 Rarres1 5430417P09Rik|AI662122 retinoic acid receptor responder (tazarotene induced) 1 protein-coding 0.015000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-11 chr1 51798241 51798441 + -1.42803 NA intron (NM_001161817, intron 9 of 30) L1MC5|LINE|L1 117637 NM_001161817 17912 Mm.3390 NM_010863 ENSMUSG00000018417 Myo1b AA406997|MIH-L|MMIa myosin IB protein-coding 0.015000 0.497512 -51(TTTCTGTTATGGAAAT,+,0.00),-27(ATATACATGAGCAATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-76 chr1 51798196 51798396 + -1.42803 NA intron (NM_001161817, intron 9 of 30) L1MC5|LINE|L1 117682 NM_001161817 17912 Mm.3390 NM_010863 ENSMUSG00000018417 Myo1b AA406997|MIH-L|MMIa myosin IB protein-coding 0.015000 0.437811 -6(TTTCTGTTATGGAAAT,+,0.00),18(ATATACATGAGCAATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1698 chr18 20375146 20375346 + -1.42868 NA Intergenic Intergenic -1483 NM_181682 225256 Mm.269128 NM_181682 ENSMUSG00000061928 Dsg1b Dsg5|dsg1-beta desmoglein 1 beta protein-coding 0.010000 0.492537 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-263 chr18 20375136 20375336 + -1.42868 NA Intergenic Intergenic -1493 NM_181682 225256 Mm.269128 NM_181682 ENSMUSG00000061928 Dsg1b Dsg5|dsg1-beta desmoglein 1 beta protein-coding 0.010000 0.482587 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-58 chr10 46045752 46045952 + -1.42868 NA Intergenic Intergenic -198896 NR_028274 100302593 NR_028274 ENSMUSG00000095118 Snord14d Gm23710 small nucleolar RNA, C/D box 14D snoRNA 0.025000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-347 chr2 178815268 178815468 + -1.42910 NA Intergenic Intergenic 384853 NM_001291189 381409 Mm.330860 NM_198656 ENSMUSG00000039155 Cdh26 Gm1010 cadherin-like 26 protein-coding 0.025000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-485 chr10 97655096 97655296 + -1.42910 NA intron (NM_007884, intron 3 of 7) intron (NM_007884, intron 3 of 7) 11128 NM_007884 13516 Mm.148886 NM_007884 ENSMUSG00000019936 Epyc Dspg3|PG-Lb|SLRR3B epiphycan protein-coding 0.015000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-910 chr13 18428086 18428286 + -1.42910 NA Intergenic Lx9|LINE|L1 -46147 NM_175006 218030 Mm.352263 NM_175006 ENSMUSG00000009734 Pou6f2 D130006K24Rik|RPF-1 POU domain, class 6, transcription factor 2 protein-coding 0.000000 0.338308 49(GATGAATATAAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3193 chr7 102438751 102438951 + -1.42971 NA Intergenic Intergenic -2844 NM_009103 20133 Mm.197486 NM_009103 ENSMUSG00000030978 Rrm1 RnrM1 ribonucleotide reductase M1 protein-coding 0.015000 0.363184 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-419 chr5 3889007 3889207 + -1.42984 NA Intergenic Lx9|LINE|L1 4826 NM_001013023 545725 Mm.99593 NM_172135 ENSMUSG00000040429 Mterf1a 4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b mitochondrial transcription termination factor 1a protein-coding 0.000000 0.422886 55(ATCTGGAAGACAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2711 chr5 3889019 3889219 + -1.42984 NA Intergenic Lx9|LINE|L1 4814 NM_001013023 545725 Mm.99593 NM_172135 ENSMUSG00000040429 Mterf1a 4931431L11Rik|9230106K09Rik|Mterf|Mterf1|mTERF1b mitochondrial transcription termination factor 1a protein-coding 0.000000 0.427861 43(ATCTGGAAGACAATGG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-121 chr12 60574256 60574456 + -1.43334 NA Intergenic Lx2|LINE|L1 947464 NR_045049 100504101 Mm.235026 NR_045049 ENSMUSG00000113429 Gm20063 - predicted gene, 20063 ncRNA 0.000000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2152 chr2 142560532 142560732 + -1.43401 NA Intergenic Intergenic 340832 NM_001355123 16558 Mm.251934 NM_001081133 ENSMUSG00000038844 Kif16b 8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590 kinesin family member 16B protein-coding 0.005000 0.402985 57(ATTTCCATAAAAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2396 chr3 116330484 116330684 + -1.43401 NA intron (NM_001080818, intron 8 of 15) L1MA5|LINE|L1 23660 NM_001355646 229776 Mm.17647 NM_001080818 ENSMUSG00000033502 Cdc14a A830059A17Rik|CDC14A2|CDC14a1|Cdc14 CDC14 cell division cycle 14A protein-coding 0.010000 0.378109 -2(CATCCATATTTATT,+,0.00),-2(CATCCATATTTATT,-,0.00) 20(ATTTACAATAGAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3479 chr9 8494817 8495017 + -1.43401 NA Intergenic Intergenic -49225 NM_001282086 22068 Mm.325086 NM_013838 ENSMUSG00000031997 Trpc6 AV025995|LLHWJM002|LLHWJM003|LLHWJM004|TRP-6|Trrp6|mtrp6 transient receptor potential cation channel, subfamily C, member 6 protein-coding 0.005000 0.328358 42(CATAAATATGAATG,+,0.00),42(CATAAATATGAATG,-,0.00) -41(TTCAGCATGACAATGA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-304 chr2 10645697 10645897 + -1.43401 NA Intergenic Intergenic 127642 NR_035418 100316831 NR_035418 ENSMUSG00000080594 Mir669h Mirn669h|mir-669h|mmu-mir-669h microRNA 669h ncRNA 0.005000 0.273632 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3439 chr8 111759129 111759329 + -1.43401 NA Intergenic Intergenic -15380 NM_009954 12927 Mm.3758 NM_009954 ENSMUSG00000031955 Bcar1 AI385681|Cas|Crkas breast cancer anti-estrogen resistance 1 protein-coding 0.020000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-496 chr10 102292225 102292425 + -1.43553 NA intron (NM_001162369, intron 1 of 5) intron (NM_001162369, intron 1 of 5) -82112 NM_026243 67569 Mm.25252 NM_026243 ENSMUSG00000019888 Mgat4c 9130411I17Rik|GntIVh MGAT4 family, member C protein-coding 0.005000 0.303483 44(TATGAATAAGTATG,+,0.00),44(TATGAATAAGTATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3327 chr8 43176002 43176202 + -1.43553 NA Intergenic Intergenic -7020 NM_001160412 622117 Mm.390031 NM_001160412 ENSMUSG00000091490 Triml2 EG622117|Tu4 tripartite motif family-like 2 protein-coding 0.020000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3749 chrX 139978171 139978371 + -1.43553 NA intron (NM_153586, intron 4 of 6) L1ME3B|LINE|L1 20324 NM_001290630 237073 Mm.256670 NM_153586 ENSMUSG00000031433 Rbm41 BB131279|D330023I21Rik RNA binding motif protein 41 protein-coding 0.005000 0.368159 67(CATGCATGTTCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-511 chr10 108419946 108420146 + -1.43553 NA intron (NR_155870, intron 1 of 2) Lx9|LINE|L1 2795 NR_155870 102640148 Mm.336104 NR_155870 ENSMUSG00000112532 Gm36283 - predicted gene, 36283 ncRNA 0.010000 0.402985 -67(TTTTGCAAGATAATCT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1834 chr19 10875764 10875964 + -1.43553 NA intron (NM_134142, intron 1 of 3) MER21C|LTR|ERVL 5879 NM_134142 68539 Mm.251890 NM_134142 ENSMUSG00000034659 Tmem109 1110006I15Rik|AA958958|C77652 transmembrane protein 109 protein-coding 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3490 chr9 18435964 18436164 + -1.43553 NA intron (NM_144934, intron 1 of 2) intron (NM_144934, intron 1 of 2) 5449 NM_144934 234988 Mm.17563 NM_144934 ENSMUSG00000047508 Mbd3l2 - methyl-CpG binding domain protein 3-like 2 protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-728 chr12 8709003 8709203 + -1.43553 NA intron (NM_030723, intron 3 of 20) intron (NM_030723, intron 3 of 20) 34422 NM_030723 80913 Mm.341243 NM_030723 ENSMUSG00000020594 Pum2 5730503J23Rik|Pumm2 pumilio RNA-binding family member 2 protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3097 chr7 16418948 16419148 + -1.43553 NA intron (NM_198631, intron 3 of 13) intron (NM_198631, intron 3 of 13) 17852 NM_198631 330474 Mm.333594 NM_198631 ENSMUSG00000059273 Zc3h4 Bwq1|Gm768|Kiaa1064-hp zinc finger CCCH-type containing 4 protein-coding 0.010000 0.437811 53(GTTTTTTCTTATAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1249 chr15 11552103 11552303 + -1.43553 NA Intergenic Intergenic -152545 NM_033074 110960 Mm.286061 NM_033074 ENSMUSG00000022241 Tars D15Wsu59e|ThrRS threonyl-tRNA synthetase protein-coding 0.010000 0.388060 49(CATGCCTTATACATT,+,0.00),49(CATGCCTTATACATT,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-127 chr12 102276421 102276621 + -1.43625 NA Intergenic Intergenic -6553 NM_177620 217835 Mm.24145 NM_177620 ENSMUSG00000044456 Rin3 6430500K07|C86933 Ras and Rab interactor 3 protein-coding 0.000000 0.383085 27(ATTTGACTGACAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-416 chr10 53765628 53765828 + -1.43710 NA Intergenic ERVL-B4-int|LTR|ERVL -14819 NM_001081428 75906 Mm.436785 NM_001081428 ENSMUSG00000019856 Fam184a 3110012E06Rik|4930438C08Rik|4930589M24Rik family with sequence similarity 184, member A protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3758 chrX 147373998 147374198 + -1.43710 NA Intergenic Lx5b|LINE|L1 55094 NM_008356 16165 Mm.368330 NM_008356 ENSMUSG00000031289 Il13ra2 CD213a2|IL-13R-alpha-2 interleukin 13 receptor, alpha 2 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2625 chr4 83813984 83814184 + -1.43710 NA intron (NM_001355549, intron 23 of 24) intron (NM_001355549, intron 23 of 24) 230795 NR_130998 78238 Mm.243903 NR_130998 ENSMUSG00000085217 6030471H07Rik - RIKEN cDNA 6030471H07 gene ncRNA 0.010000 0.333333 73(ATTCAATAATTCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2451 chr3 134664192 134664392 + -1.43710 NA Intergenic Intergenic -164715 NM_021382 21338 Mm.103810 NM_021382 ENSMUSG00000028172 Tacr3 Nk3r|Nkr|Tac3r tachykinin receptor 3 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-176 chr1 104550966 104551166 + -1.43710 NA Intergenic Lx|LINE|L1 -217454 NM_011800 23836 Mm.103640 NM_011800 ENSMUSG00000050840 Cdh20 Cdh7 cadherin 20 protein-coding 0.000000 0.383085 -57(GCTTTGTTTTGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2955 chr6 36658324 36658524 + -1.43710 NA Intergenic Lx9|LINE|L1 151755 NM_008973 19242 Mm.279690 NM_008973 ENSMUSG00000029838 Ptn HARP|HB-GAM|HBBM|HBBN|HBGF-8|HBNF|OSF|Osf-1|Osf1 pleiotrophin protein-coding 0.010000 0.348259 -27(TAGGAATATGCATA,+,0.00),-21(TATGCATATGTAAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1386 chr15 93449621 93449821 + -1.43710 NA intron (NM_001358749, intron 5 of 8) intron (NM_001358749, intron 5 of 8) 51257 NM_001285863 223828 Mm.74208 NM_146062 ENSMUSG00000036167 Pphln1 CR|HSPC206|HSPC232 periphilin 1 protein-coding 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3315 chr8 36710791 36710991 + -1.44022 NA intron (NM_001194940, intron 5 of 17) intron (NM_001194940, intron 5 of 17) 22163 NM_001194941 50768 Mm.125155 NM_015802 ENSMUSG00000031523 Dlc1 A730069N07Rik|Arhgap7|HP|STARD12|dlc-1 deleted in liver cancer 1 protein-coding 0.005000 0.407960 -22(CCTTTAATTTGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2846 chr5 96479371 96479571 + -1.44022 NA intron (NM_175473, intron 2 of 73) intron (NM_175473, intron 2 of 73) 105516 NM_175473 231470 Mm.291120 NM_175473 ENSMUSG00000034687 Fras1 E130113P14Rik|bl|mKIAA1500 Fraser extracellular matrix complex subunit 1 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2460 chr3 137483004 137483204 + -1.44022 NA Intergenic Intergenic 69558 NM_177665 229862 Mm.246591 NM_177665 Gm4861 9230109N16|EG229862 predicted gene 4861 protein-coding 0.005000 0.398010 67(GCTTTATCTTTCAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1408 chr16 7174880 7175080 + -1.44022 NA intron (NM_183188, intron 1 of 12) intron (NM_183188, intron 1 of 12) 105145 NM_183188 268859 Mm.370334 NM_021477 ENSMUSG00000008658 Rbfox1 A2bp|A2bp1|Hrnbp1|fox-1 RNA binding protein, fox-1 homolog (C. elegans) 1 protein-coding 0.000000 0.298507 -42(CCTTTGTTTATCAAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-444 chr5 96479295 96479495 + -1.44022 NA intron (NM_175473, intron 2 of 73) intron (NM_175473, intron 2 of 73) 105440 NM_175473 231470 Mm.291120 NM_175473 ENSMUSG00000034687 Fras1 E130113P14Rik|bl|mKIAA1500 Fraser extracellular matrix complex subunit 1 protein-coding 0.005000 0.328358 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-351 chr3 28675698 28675898 + -1.44028 NA Intergenic Intergenic -22105 NM_031197 20526 Mm.18443 NM_031197 ENSMUSG00000027690 Slc2a2 AI266973|Glut-2|Glut2 solute carrier family 2 (facilitated glucose transporter), member 2 protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2234 chr3 28675745 28675945 + -1.44028 NA Intergenic Intergenic -22058 NM_031197 20526 Mm.18443 NM_031197 ENSMUSG00000027690 Slc2a2 AI266973|Glut-2|Glut2 solute carrier family 2 (facilitated glucose transporter), member 2 protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1460 chr16 43401126 43401326 + -1.44097 NA intron (NM_181058, intron 2 of 6) MIR3|SINE|MIR 18970 NR_046026 626693 Mm.447083 NR_046026 ENSMUSG00000085499 Gm15713 - predicted gene 15713 ncRNA 0.005000 0.363184 31(TATGCATATGCAGA,+,0.00),31(TATGCATATGCAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-182 chr1 105701399 105701599 + -1.44097 NA intron (NM_173187, intron 10 of 28) intron (NM_173187, intron 10 of 28) 37638 NM_029349 227446 Mm.337339 NM_029349 ENSMUSG00000026319 Relch 2310035C23Rik|6430401N10|Kiaa1468|mKIAA1468 RAB11 binding and LisH domain, coiled-coil and HEAT repeat containing protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2047 chr2 81803663 81803863 + -1.44097 NA Intergenic Intergenic -249895 NM_175513 241514 Mm.119383 NM_175513 ENSMUSG00000070866 Zfp804a C630007C17Rik|Znf804a zinc finger protein 804A protein-coding 0.015000 0.328358 83(GATGAATATGTATA,+,0.00),83(GATGAATATGTATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3549 chr9 60526964 60527164 + -1.44097 NA intron (NR_040464, intron 2 of 3) intron (NR_040464, intron 2 of 3) -16029 NM_001040426 207596 Mm.28791 NM_172444 ENSMUSG00000032289 Thsd4 ADAMTSL-6|ADAMTSL6|AI585901|Adamtsl4|B230114P05Rik thrombospondin, type I, domain containing 4 protein-coding 0.010000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2795 chr5 62865704 62865904 + -1.44097 NA intron (NM_001170705, intron 8 of 9) RMER15|LTR|ERVL 54148 NM_001170705 100322896 NM_001170705 ENSMUSG00000090326 Dthd1 Gm17384 death domain containing 1 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2891 chr5 131594459 131594659 + -1.44097 NA intron (NM_001363480, intron 5 of 19) intron (NM_001363480, intron 5 of 19) -179841 NR_152164 545809 Mm.357553 NR_152164 ENSMUSG00000105387 Gm29681 Gm42590 predicted gene, 29681 ncRNA 0.010000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1893 chr19 41772290 41772490 + -1.44097 NA intron (NM_001163495, intron 10 of 10) intron (NM_001163495, intron 10 of 10) 25429 NR_040320 100502871 Mm.394485 NR_040320 Gm19424 - predicted gene, 19424 ncRNA 0.010000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3728 chrX 97570697 97570897 + -1.44103 NA Intergenic Lx2B|LINE|L1 -193588 NM_001161433 245527 Mm.189270 NM_175540 ENSMUSG00000034457 Eda2r 9430060M22Rik|TNFRSF27|Xedar ectodysplasin A2 receptor protein-coding 0.010000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3164 chr7 85251395 85251595 + -1.44103 NA Intergenic Intergenic -13791 NM_001105181 620697 Mm.389945 NM_001105181 ENSMUSG00000096861 Vmn2r68 EG620697|Vmn2r68-ps vomeronasal 2, receptor 68 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2785 chr5 56440411 56440611 + -1.44103 NA Intergenic Intergenic 1277408 NR_015588 319216 Mm.332387 NR_015588 ENSMUSG00000097216 4932441J04Rik - RIKEN cDNA 4932441J04 gene ncRNA 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1827 chr19 6513860 6514060 + -1.44103 NA intron (NM_001369363, intron 20 of 22) intron (NM_001369363, intron 20 of 22) 29110 NM_009203 20521 Mm.391146 NM_009203 ENSMUSG00000061742 Slc22a12 AI987855|OAT4L|Rst|Slc22al2|URAT1 solute carrier family 22 (organic anion/cation transporter), member 12 protein-coding 0.020000 0.572139 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1146 chr14 71609682 71609882 + -1.44103 NA Intergenic Intergenic -246927 NR_046274 74667 Mm.159286 NR_046274 ENSMUSG00000115304 4930434J06Rik - RIKEN cDNA 4930434J06 gene ncRNA 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1314 chr15 49937426 49937626 + -1.44103 NA Intergenic Intergenic 951523 NM_001310481 83925 Mm.30466 NM_032000 ENSMUSG00000038679 Trps1 AI115454|AI447310|D15Ertd586e transcriptional repressor GATA binding 1 protein-coding 0.005000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1844 chr19 16075508 16075708 + -1.44103 NA Intergenic Intergenic -57076 NM_008139 14682 Mm.439701 NM_008139 ENSMUSG00000024639 Gnaq 1110005L02Rik|6230401I02Rik|AA408290|AW060788|Dsk1|Dsk10|Galphaq|Gq|GqI guanine nucleotide binding protein, alpha q polypeptide protein-coding 0.010000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2621 chr4 82090605 82090805 + -1.44103 NA intron (NR_040659, intron 2 of 2) intron (NR_040659, intron 2 of 2) -24815 NR_151604 102635575 Mm.403314 NR_151604 ENSMUSG00000087110 Gm11264 - predicted gene 11264 ncRNA 0.010000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2630 chr4 86513310 86513510 + -1.44103 NA intron (NM_001081096, intron 1 of 3) RLTR13B2|LTR|ERVK 44893 NM_001081096 75811 Mm.56451 NM_001081096 ENSMUSG00000028492 Saxo1 4930500O09Rik|Fam154a stabilizer of axonemal microtubules 1 protein-coding 0.045000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-262 chr1 155670840 155671040 + -1.44103 NA intron (NM_028250, intron 6 of 7) intron (NM_028250, intron 6 of 7) 71087 NM_010712 16872 Mm.103624 NM_010712 ENSMUSG00000026468 Lhx4 A330062J17Rik|Gsh-4|Gsh4 LIM homeobox protein 4 protein-coding 0.005000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3619 chr9 95921049 95921249 + -1.44103 NA intron (NM_019864, intron 32 of 46) intron (NM_019864, intron 32 of 46) -33611 NM_011916 24127 Mm.291179 NM_011916 ENSMUSG00000032410 Xrn1 Dhm2|exo|mXrn1 5'-3' exoribonuclease 1 protein-coding 0.005000 0.303483 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2878 chr5 120080516 120080716 + -1.44103 NA Intergenic Intergenic -35897 NM_028762 74111 Mm.41022 NM_028762 ENSMUSG00000029594 Rbm19 1200009A02Rik|AV302714|NPO RNA binding motif protein 19 protein-coding 0.005000 0.582090 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1165 chr14 81963469 81963669 + -1.44103 NA Intergenic Lx4A|LINE|L1 1963267 NM_001351947 380924 Mm.26456 NM_001030294 ENSMUSG00000022026 Olfm4 GC1|GW112|Gm296|Gm913|OlfD|pPD4 olfactomedin 4 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2428 chr3 124976456 124976656 + -1.44103 NA Intergenic Intergenic -395465 NM_001368235 384775 Mm.489851 NM_001368235 ENSMUSG00000039174 1700003H04Rik 4930538K10Rik|4933400D22Rik RIKEN cDNA 1700003H04 gene protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2562 chr4 44262420 44262620 + -1.44103 NA Intergenic Tigger12A|DNA|TcMar-Tigger -38397 NM_010790 17279 Mm.268668 NM_010790 ENSMUSG00000035683 Melk AI327312|MPK38|mKIAA0175 maternal embryonic leucine zipper kinase protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1458 chr16 43172921 43173121 + -1.44103 NA intron (NM_001285805, intron 2 of 10) AmnSINE2|SINE|Deu -74263 NM_181058 56490 Mm.136238 NM_019778 ENSMUSG00000022708 Zbtb20 1300017A20Rik|7330412A13Rik|A930017C21Rik|D16Wsu73e|DPZF|HOF|J20|ODA-8S|Oda8|Tg(PDGFB-APPSwInd)20Lms|Zfp288 zinc finger and BTB domain containing 20 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3553 chr9 62111957 62112157 + -1.44103 NA intron (NR_160774, intron 1 of 2) intron (NR_160774, intron 1 of 2) 10537 NR_039595 100628602 NR_039595 ENSMUSG00000092696 Mir5133 mir-5133|mmu-mir-5133|mu-mir-5133 microRNA 5133 ncRNA 0.005000 0.333333 -2(GTATTCTTTTGCTTAT,+,0.00),50(ATCTGCACGCCAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3010 chr6 80301951 80302151 + -1.44103 NA intron (NM_001134743, intron 2 of 2) intron (NM_001134743, intron 2 of 2) 282408 NM_001347261 243499 Mm.483425 NM_178731 ENSMUSG00000052581 Lrrtm4 7530419J18Rik|A230052N11 leucine rich repeat transmembrane neuronal 4 protein-coding 0.000000 0.437811 -28(TTCTGAATGAGAAACA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3661 chr9 120971027 120971227 + -1.44103 NA intron (NM_177589, intron 35 of 36) L1_Mur3|LINE|L1 16041 NR_106058 102465661 NR_106058 ENSMUSG00000106193 Mir7090 mmu-mir-7090 microRNA 7090 ncRNA 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2417 chr3 123206419 123206619 + -1.44103 NA intron (NM_080451, intron 1 of 4) L1ME3Cz|LINE|L1 29630 NM_080451 118449 Mm.34359 NM_080451 ENSMUSG00000050315 Synpo2 1110069I04Rik|2310068J10Rik|9530006G20Rik|AI848603|Myo synaptopodin 2 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-468 chr10 84657629 84657829 + -1.44103 NA intron (NM_027423, intron 12 of 27) intron (NM_027423, intron 12 of 27) 35431 NM_027423 70428 Mm.335007 NM_027423 ENSMUSG00000034453 Polr3b 2700078H01Rik|A330032P03Rik|C128|C85372|RPC2 polymerase (RNA) III (DNA directed) polypeptide B protein-coding 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3322 chr8 39181260 39181460 + -1.44103 NA Intergenic ORR1A2|LTR|ERVL-MaLR -116620 NR_044988 621335 Mm.208080 NR_044988 ENSMUSG00000109827 Gm6213 EG621335 predicted gene 6213 ncRNA 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3335 chr8 45448145 45448345 + -1.44278 NA Intergenic Intergenic -37626 NM_001357317 142980 Mm.33874 NM_126166 ENSMUSG00000031639 Tlr3 AI957183 toll-like receptor 3 protein-coding 0.010000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1984 chr2 41638562 41638762 + -1.44278 NA intron (NM_053011, intron 7 of 90) intron (NM_053011, intron 7 of 90) 808906 NR_105754 102465171 NR_105754 ENSMUSG00000098660 Mir6336 Gm27584|mmu-mir-6336 microRNA 6336 ncRNA 0.000000 0.263682 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-809 chr12 60574593 60574793 + -1.44278 NA Intergenic Intergenic 947127 NR_045049 100504101 Mm.235026 NR_045049 ENSMUSG00000113429 Gm20063 - predicted gene, 20063 ncRNA 0.005000 0.358209 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-125 chr12 93099659 93099859 + -1.44278 NA Intergenic RMER4A|LTR|ERVK 345064 NR_126436 75295 Mm.243878 NR_126436 ENSMUSG00000113164 4930559C10Rik - RIKEN cDNA 4930559C10 gene ncRNA 0.010000 0.368159 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-472 chr6 48586848 48587048 + -1.45084 NA Intergenic RMER1B|Other|Other -2497 NM_183309 330305 Mm.123868 NM_183309 Gm5111 A630038D02|EG330305 predicted gene 5111 protein-coding 0.010000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2855 chr5 101104559 101104759 + -1.45092 NA Intergenic Intergenic 258430 NM_172715 231510 Mm.271911 NM_172715 ENSMUSG00000029314 Gpat3 1-AGPAT|1-AGPAT 9|4933407I02Rik|4933408F15|A230097K15Rik|Agpat9|GPAT-3|mGPAT3 glycerol-3-phosphate acyltransferase 3 protein-coding 0.010000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-58 chr1 40808817 40809017 + -1.45092 NA intron (NM_001081198, intron 3 of 4) intron (NM_001081198, intron 3 of 4) 3316 NM_001081198 381339 Mm.334678 NM_001081198 ENSMUSG00000079588 Tmem182 2310079P10Rik|AI414494 transmembrane protein 182 protein-coding 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-53 chr1 35435769 35435969 + -1.45092 NA Intergenic MER21B|LTR|ERVL 585880 NM_001357425 226971 Mm.292751 NM_145516 ENSMUSG00000026123 Plekhb2 2310009M15Rik|AU018239|Evt2|Phdc|evt-2 pleckstrin homology domain containing, family B (evectins) member 2 protein-coding 0.015000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-284 chr1 170393351 170393551 + -1.45092 NA intron (NR_154593, intron 2 of 9) intron (NR_154593, intron 2 of 9) 84632 NM_001039593 76925 Mm.33631 NM_001039593 ENSMUSG00000042800 Spata46 1700015E13Rik spermatogenesis associated 46 protein-coding 0.015000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1265 chr15 18495477 18495677 + -1.45092 NA Intergenic L1_Mur3|LINE|L1 -125950 NR_045711 70886 Mm.399021 NR_045711 ENSMUSG00000098150 4921515E04Rik - RIKEN cDNA 4921515E04 gene ncRNA 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3330 chr8 44369951 44370151 + -1.45092 NA Intergenic Intergenic -580157 NM_001081286 14107 Mm.27365 NM_001081286 ENSMUSG00000070047 Fat1 2310038E12Rik|AU023433|Fath|mFat1 FAT atypical cadherin 1 protein-coding 0.000000 0.298507 -91(CATACATATGAATG,+,0.00),-91(CATACATATGAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2769 chr5 45267587 45267787 + -1.45092 NA intron (NR_131933, intron 4 of 5) intron (NR_131933, intron 4 of 5) 156713 NR_131933 52401 Mm.33854 NR_131933 ENSMUSG00000029092 D5Ertd615e 4930435H24Rik DNA segment, Chr 5, ERATO Doi 615, expressed ncRNA 0.015000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3683 chrX 19556995 19557195 + -1.45092 NA Intergenic Intergenic -75776 NM_207524 278255 Mm.303203 NM_207524 ENSMUSG00000068149 Tex13c3 Gm720 TEX13 family member C3 protein-coding 0.005000 0.333333 -92(GGATTATCATTTAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-73 chr1 50195651 50195851 + -1.45092 NA Intergenic Lx2|LINE|L1 -731772 NM_019790 56363 Mm.245154 NM_019790 ENSMUSG00000026109 Tmeff2 4832418D20Rik|7630402F16Rik|TR-2 transmembrane protein with EGF-like and two follistatin-like domains 2 protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-14 chr1 13343266 13343466 + -1.45092 NA intron (NM_008678, intron 1 of 22) intron (NM_008678, intron 1 of 22) 29063 NM_001302702 17978 Mm.2537 NM_008678 ENSMUSG00000005886 Ncoa2 D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2543 chr4 31805284 31805484 + -1.45092 NA Intergenic Intergenic -158723 NM_009316 26409 Mm.258589 NM_009316 ENSMUSG00000028284 Map3k7 B430101B05|C87327|Tak1 mitogen-activated protein kinase kinase kinase 7 protein-coding 0.005000 0.442786 -84(TCCTTGTGTTTCAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1594 chr17 32463264 32463464 + -1.45158 NA intron (NM_177307, intron 1 of 13) PB1D7|SINE|Alu 10641 NM_177307 320997 Mm.130900 NM_177307 ENSMUSG00000061126 Cyp4f39 4732474A20Rik cytochrome P450, family 4, subfamily f, polypeptide 39 protein-coding 0.000000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2951 chr6 32955302 32955502 + -1.45158 NA intron (NM_001355667, intron 4 of 8) intron (NM_001355667, intron 4 of 8) 104858 NM_001355667 66075 Mm.21501 NM_025336 ENSMUSG00000053768 Chchd3 0610041L09Rik|1700039J09Rik|AW558177|Micos19 coiled-coil-helix-coiled-coil-helix domain containing 3 protein-coding 0.010000 0.422886 -27(CATGCATTTGTATC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2816 chr5 81164113 81164313 + -1.45158 NA intron (NM_001359828, intron 2 of 26) intron (NM_001359828, intron 2 of 26) 142620 NM_198702 319387 Mm.273631 NM_198702 ENSMUSG00000037605 Adgrl3 5430402I23Rik|CIRL-3|D130075K09Rik|Gm1379|LEC3|Lphn3|mKIAA0768 adhesion G protein-coupled receptor L3 protein-coding 0.005000 0.333333 -19(CTTTGAATGAAAGAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-667 chr11 84512425 84512625 + -1.45158 NA intron (NM_019816, intron 1 of 12) intron (NM_019816, intron 1 of 12) 976 NM_019816 56321 Mm.257482 NM_019816 ENSMUSG00000018697 Aatf 4933415H02Rik|5830465M17Rik|Che-1|Trb apoptosis antagonizing transcription factor protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-751 chr12 27320779 27320979 + -1.45158 NA Intergenic Intergenic 21839 NM_009234 20666 Mm.41702 NM_009234 ENSMUSG00000063632 Sox11 1110038H03Rik|6230403H02Rik|AI836553|end1 SRY (sex determining region Y)-box 11 protein-coding 0.000000 0.497512 -33(CCTTCATATGCATG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2665 chr4 105606778 105606978 + -1.45158 NA Intergenic Intergenic 449531 NM_080555 67916 Mm.348326 NM_080555 ENSMUSG00000028517 Plpp3 1110003O22Rik|2610002D05Rik|AV025606|D4Bwg0538e|D4Bwg1535e|Lpp3|PRG-2|Ppab2b|Ppap2b phospholipid phosphatase 3 protein-coding 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-695 chr11 100055811 100056011 + -1.45158 NA Intergenic Intergenic -5360 NM_010659 16660 Mm.439673 NM_010659 ENSMUSG00000048981 Krt31 Ha1|Kha1|Krt1-1|MKHA-1 keratin 31 protein-coding 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2017 chr2 57839308 57839508 + -1.45158 NA Intergenic Intergenic -158747 NM_172855 241391 Mm.484118 NM_172855 ENSMUSG00000026828 Galnt5 4832424J23 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 0.000000 0.288557 43(TTTTTCATAACAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2103 chr2 118088641 118088841 + -1.45158 NA intron (NR_126479, intron 2 of 9) intron (NR_126479, intron 2 of 9) 22461 NR_126479 329496 Mm.235844 NR_126479 ENSMUSG00000087203 Gm13986 C230060E24 predicted gene 13986 ncRNA 0.000000 0.393035 -28(ACATTATTATGGTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-622 chr11 54066915 54067115 + -1.45158 NA intron (NM_019417, intron 1 of 6) intron (NM_019417, intron 1 of 6) 2002 NM_019417 30794 Mm.21830 NM_019417 ENSMUSG00000020388 Pdlim4 Ril PDZ and LIM domain 4 protein-coding 0.010000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2292 chr3 63799598 63799798 + -1.45158 NA intron (NM_001370984, intron 3 of 23) intron (NM_001370984, intron 3 of 23) 51587 NM_183191 269437 Mm.316391 NM_183191 ENSMUSG00000036834 Plch1 BC042549|PLC-eta-1|PLCeta1|Plcl3 phospholipase C, eta 1 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3364 chr8 67646824 67647024 + -1.45298 NA Intergenic Intergenic 123070 NM_008674 17962 Mm.57193 NM_008674 ENSMUSG00000056426 Nat3 - N-acetyltransferase 3 protein-coding 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3526 chr9 43729618 43729818 + -1.45298 NA Intergenic Intergenic -14236 NM_021424 58235 Mm.335096 NM_021424 ENSMUSG00000032012 Nectin1 AI835281|AW549174|Cd111|HIgR|HveC|PRR|PRR1|Pvrl1|nectin-1 nectin cell adhesion molecule 1 protein-coding 0.015000 0.601990 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3730 chrX 100449419 100449619 + -1.45430 NA Intergenic Intergenic -6802 NM_001290395 245532 Mm.118171 NM_177746 ENSMUSG00000031220 Awat2 9430062J17Rik|ARAT|Dgat2l4|WS acyl-CoA wax alcohol acyltransferase 2 protein-coding 0.015000 0.412935 -8(TCTTTTTCATGTACAC,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-399 chr4 52943214 52943414 + -1.45520 NA Intergenic Intergenic -27315 NM_146607 258600 Mm.377586 NM_146607 ENSMUSG00000070983 Olfr270 MOR262-9 olfactory receptor 270 protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3001 chr6 74844338 74844538 + -1.45934 NA Intergenic Intergenic -1235765 NR_157242 102634075 Mm.78553 NR_157242 ENSMUSG00000107441 Gm31747 - predicted gene, 31747 ncRNA 0.000000 0.303483 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1187 chr14 96348372 96348572 + -1.45934 NA intron (NM_053105, intron 3 of 10) MER68B|LTR|ERVL 170562 NM_053105 93688 Mm.308735 NM_053105 ENSMUSG00000022076 Klhl1 mKIAA1490 kelch-like 1 protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-642 chr11 64001118 64001318 + -1.45934 NA intron (NM_178379, intron 4 of 6) intron (NM_178379, intron 4 of 6) 36992 NR_131111 78883 Mm.410764 NR_131111 ENSMUSG00000086359 9630013K17Rik - RIKEN cDNA 9630013K17 gene ncRNA 0.005000 0.407960 8(TCATTCTCATTGAGAT,+,0.00),85(TGGTTTTCATGCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3592 chr9 85195994 85196194 + -1.45934 NA Intergenic Intergenic 131030 NM_001160378 212943 Mm.74610 NM_001160378 ENSMUSG00000032265 Tent5a BAP014|D930050G01Rik|Fam46a terminal nucleotidyltransferase 5A protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3206 chr7 113126992 113127192 + -1.45934 NA intron (NR_045978, intron 2 of 5) intron (NR_045978, intron 2 of 5) 14923 NR_045978 75239 Mm.381688 NR_045978 ENSMUSG00000110009 4930543E12Rik 4930545H14Rik RIKEN cDNA 4930543E12 gene ncRNA 0.010000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1471 chr16 50290555 50290755 + -1.45934 NA intron (NM_027444, intron 3 of 16) intron (NM_027444, intron 3 of 16) 141734 NM_027444 70508 Mm.28940 NM_027444 ENSMUSG00000022641 Bbx 5530401J07Rik|5730403O13Rik bobby sox HMG box containing protein-coding 0.000000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3671 chrUn_GL456239 671 871 + -1.45934 NA NA Intergenic NA NA 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2019 chr2 58323136 58323336 + -1.45934 NA intron (NM_001111030, intron 1 of 8) intron (NM_001111030, intron 1 of 8) 1571 NM_001033369 269275 Mm.77751 NM_001033369 ENSMUSG00000026834 Acvr1c ACTR-IC|ACVRLK7|ALK7|Alk-7|C230097P10 activin A receptor, type IC protein-coding 0.020000 0.363184 -1(TCTTTGTTATGATCAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3168 chr7 87712837 87713037 + -1.45934 NA intron (NM_001081414, intron 3 of 9) Lx7|LINE|L1 128769 NM_001081414 108071 Mm.235018 NM_001033224 ENSMUSG00000049583 Grm5 6430542K11Rik|AI850523|Glu5R|Gprc1e|mGluR5|mGluR5b glutamate receptor, metabotropic 5 protein-coding 0.010000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1125 chr14 60588404 60588604 + -1.45934 NA Intergenic Intergenic -46201 NM_001033272 219140 Mm.149776 NM_001033272 ENSMUSG00000021990 Spata13 C79050|ESTM11|X83327|mFLJ00298 spermatogenesis associated 13 protein-coding 0.020000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2908 chr5 145150516 145150716 + -1.45934 NA intron (NM_133735, intron 8 of 8) intron (NM_133735, intron 8 of 8) 10179 NM_001310770 231889 Mm.277413 NM_001008705 ENSMUSG00000038722 Bud31 C77604|EDG-2|EDG2|G10 BUD31 homolog protein-coding 0.015000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3533 chr9 47792298 47792498 + -1.45934 NA intron (NM_001025600, intron 3 of 8) intron (NM_001025600, intron 3 of 8) 25810 NR_046048 100038460 Mm.447649 NR_046048 Gm10677 - predicted gene 10677 ncRNA 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2728 chr5 13926416 13926616 + -1.45934 NA Intergenic Intergenic -98760 NM_011348 20349 Mm.134093 NM_011348 ENSMUSG00000063531 Sema3e 6430702L12|AA408817|Semah|mKIAA0331 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3E protein-coding 0.000000 0.393035 -61(AATGAATATGAATC,+,0.00),-61(AATGAATATGAATC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1103 chr14 36353172 36353372 + -1.45934 NA Intergenic L1_Mur2|LINE|L1 258307 NM_175008 218921 Mm.212464 NM_175008 ENSMUSG00000096405 4930474N05Rik - RIKEN cDNA 4930474N05 gene protein-coding 0.000000 0.343284 29(AATACATATGGATC,+,0.00),29(AATACATATGGATC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2925 chr6 12016443 12016643 + -1.45934 NA intron (NM_001362122, intron 15 of 16) intron (NM_001362122, intron 15 of 16) 90662 NM_001168382 75725 Mm.212411 NM_029404 ENSMUSG00000029629 Phf14 1110001C23Rik|4932409F11Rik|5730446A07Rik|AA623952|AV297001|mKIAA0783 PHD finger protein 14 protein-coding 0.015000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1813 chr18 82888918 82889118 + -1.45934 NA Intergenic Intergenic -21861 NM_183033 329003 Mm.326526 NM_183033 ENSMUSG00000058881 Zfp516 C330029B10Rik|D230016L03|Zfp26l|Znf516|mKIAA0222 zinc finger protein 516 protein-coding 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2012 chr2 53606115 53606315 + -1.45984 NA Intergenic Intergenic 414131 NM_022989 65103 Mm.37623 NM_022989 ENSMUSG00000026960 Arl6ip6 2310057C01Rik|2610529A11Rik|Aip-6 ADP-ribosylation factor-like 6 interacting protein 6 protein-coding 0.010000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-360 chr3 77058653 77058853 + -1.45984 NA Intergenic Intergenic 983170 NM_001253719 213262 Mm.379337 NM_178673 ENSMUSG00000034098 Fstl5 9130207J01Rik follistatin-like 5 protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-860 chr12 102276406 102276606 + -1.45988 NA Intergenic Intergenic -6568 NM_177620 217835 Mm.24145 NM_177620 ENSMUSG00000044456 Rin3 6430500K07|C86933 Ras and Rab interactor 3 protein-coding 0.000000 0.383085 42(ATTTGACTGACAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1120 chr14 58488798 58488998 + -1.46318 NA Intergenic Intergenic 416212 NM_013518 14180 Mm.8846 NM_013518 ENSMUSG00000021974 Fgf9 Eks fibroblast growth factor 9 protein-coding 0.020000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-687 chr11 97826235 97826435 + -1.46318 NA intron (NM_010688, intron 4 of 6) intron (NM_010688, intron 4 of 6) -14771 NR_160861 68127 Mm.110270 NM_001080935 ENSMUSG00000050538 B230217C12Rik AI840637 RIKEN cDNA B230217C12 gene ncRNA 0.010000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3390 chr8 81760162 81760362 + -1.46318 NA intron (NM_001297593, intron 4 of 23) intron (NM_001297593, intron 4 of 23) 417700 NM_001297596 234515 Mm.324468 NM_001024617 ENSMUSG00000037940 Inpp4b E130107I17Rik inositol polyphosphate-4-phosphatase, type II protein-coding 0.020000 0.298507 -16(ATCTACAAGAATAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1902 chr19 45582307 45582507 + -1.46318 NA intron (NM_013907, intron 6 of 8) intron (NM_013907, intron 6 of 8) 21822 NM_001356947 226162 Mm.21978 NM_172639 ENSMUSG00000041035 Dpcd Ndac deleted in primary ciliary dyskinesia protein-coding 0.025000 0.572139 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2048 chr2 81803769 81803969 + -1.46318 NA Intergenic Intergenic -249789 NM_175513 241514 Mm.119383 NM_175513 ENSMUSG00000070866 Zfp804a C630007C17Rik|Znf804a zinc finger protein 804A protein-coding 0.010000 0.388060 -23(GATGAATATGTATA,+,0.00),-23(GATGAATATGTATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3191 chr7 101677035 101677235 + -1.46318 NA intron (NM_001363991, intron 2 of 16) intron (NM_001363991, intron 2 of 16) 13384 NM_001363991 20480 Mm.3990 NM_009191 ENSMUSG00000001829 Clpb AL118244|Skd3 ClpB caseinolytic peptidase B protein-coding 0.010000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2960 chr6 39211843 39212043 + -1.46318 NA Intergenic L3|LINE|CR1 -5170 NM_001033430 338523 Mm.293175 NM_001033430 ENSMUSG00000042599 Kdm7a A630082K20Rik|BB041802|Jhdm1d|mKIAA1718 lysine (K)-specific demethylase 7A protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1841 chr19 14505607 14505807 + -1.46385 NA intron (NM_001302947, intron 8 of 19) intron (NM_001302947, intron 8 of 19) -67201 NR_003027 19862 NR_003027 ENSMUSG00000095132 Rnu6 - U6 small nuclear RNA snRNA 0.010000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1479 chr16 55393528 55393728 + -1.46385 NA Intergenic Intergenic -101103 NR_039578 100628589 NR_039578 ENSMUSG00000093292 Mir5118 mmu-mir-5118|mu-mir-5118 microRNA 5118 ncRNA 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-436 chr10 63907414 63907614 + -1.46427 NA intron (NM_177612, intron 7 of 17) L1MA7|LINE|L1 86459 NM_001164519 216033 Mm.444692 NM_177612 ENSMUSG00000060843 Ctnna3 4930429L08Rik|4933408A16|Catna3|Vr22 catenin (cadherin associated protein), alpha 3 protein-coding 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2756 chr5 33512030 33512230 + -1.46544 NA Intergenic Intergenic -78040 NM_011320 672284 NM_011320 ENSMUSG00000029112 Nkx1-1 Nkx-1.1|Sax2 NK1 homeobox 1 protein-coding 0.045000 0.592040 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1388 chr15 93783678 93783878 + -1.46544 NA Intergenic Intergenic 143333 NR_045737 77248 Mm.410768 NR_045737 ENSMUSG00000116360 9430014N10Rik - RIKEN cDNA 9430014N10 gene ncRNA 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3134 chr7 69889606 69889806 + -1.46544 NA Intergenic Intergenic 393612 NR_045940 73796 Mm.410832 NR_045940 ENSMUSG00000108885 4930402F11Rik - RIKEN cDNA 4930402F11 gene ncRNA 0.010000 0.378109 -56(TATGAAATATTCATT,+,0.00),-56(TATGAAATATTCATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2718 chr5 8393758 8393958 + -1.46544 NA Intergenic Intergenic -25698 NM_001310440 11496 Mm.275895 NM_001007220 ENSMUSG00000040537 Adam22 2900022I03Rik|AI854032|MDC2 a disintegrin and metallopeptidase domain 22 protein-coding 0.000000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1268 chr15 21168047 21168247 + -1.46544 NA intron (NM_001008420, intron 1 of 11) intron (NM_001008420, intron 1 of 11) 56695 NM_001008420 215654 Mm.300909 NM_001008420 ENSMUSG00000040452 Cdh12 Cdhb cadherin 12 protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2242 chr3 33337213 33337413 + -1.46544 NA Intergenic L1M2|LINE|L1 -194122 NM_001163516 58869 Mm.151332 NM_021483 ENSMUSG00000027674 Pex5l 1700016J08Rik|PXR2|Pex2|TRIP8b|pex5Rp peroxisomal biogenesis factor 5-like protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-378 chr10 30702853 30703053 + -1.46544 NA intron (NM_001358842, intron 4 of 14) intron (NM_001358842, intron 4 of 14) -47086 NM_001111267 211329 Mm.297903 NM_172495 ENSMUSG00000039697 Ncoa7 9030406N13Rik nuclear receptor coactivator 7 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2362 chr3 101145810 101146010 + -1.46590 NA Intergenic (CA)n|Simple_repeat|Simple_repeat -35744 NM_011197 19221 Mm.24807 NM_011197 ENSMUSG00000027864 Ptgfrn 4833445A08Rik|AU042434|CD9P-1|EWI-F|FPRP|Trim45 prostaglandin F2 receptor negative regulator protein-coding 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-190 chr1 109812624 109812824 + -1.46850 NA Intergenic ORR1E|LTR|ERVL-MaLR -170176 NM_001316743 241201 Mm.213407 NM_172853 ENSMUSG00000026312 Cdh7 9330156F07Rik|CDH7L1 cadherin 7, type 2 protein-coding 0.000000 0.348259 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-77 chr10 102881295 102881495 + -1.47374 NA Intergenic Intergenic 147382 NM_172553 216285 Mm.19287 NM_172553 ENSMUSG00000036602 Alx1 AI314867|C130005I02|Cart1 ALX homeobox 1 protein-coding 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3555 chr9 62916160 62916360 + -1.47416 NA intron (NM_019663, intron 6 of 13) B1_Mur1|SINE|Alu -54236 NR_003965 677044 Mm.422004 NR_003965 ENSMUSG00000074250 Gm10653 - ribsomal protein S2 pseudogene pseudo 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1444 chr16 30172305 30172505 + -1.47416 NA Intergenic Intergenic 95127 NM_027904 71756 Mm.290614 NM_027904 ENSMUSG00000023176 Cpn2 1300018K11Rik carboxypeptidase N, polypeptide 2 protein-coding 0.015000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2863 chr5 109865539 109865739 + -1.47416 NA Intergenic RLTR22_Mus|LTR|ERVK -31497 NR_027964 667213 Mm.454429 NR_027964 ENSMUSG00000105044 Gm10416 EG667213 zinc finger protein pseudogene pseudo 0.000000 0.333333 -11(GTTTGAATAAAAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3294 chr8 23900173 23900373 + -1.47416 NA intron (NM_001277239, intron 4 of 7) Lx9|LINE|L1 230612 NM_177086 320158 Mm.121274 NM_177086 ENSMUSG00000037492 Zmat4 9630048M01Rik zinc finger, matrin type 4 protein-coding 0.000000 0.348259 -17(ATTTGAAAGAGAGCAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2722 chr5 9486352 9486552 + -1.47449 NA intron (NM_181850, intron 5 of 5) intron (NM_181850, intron 5 of 5) 110748 NR_030537 100124492 NR_030537 ENSMUSG00000077896 Mir879 Mirn879|mir-879|mmu-mir-879 microRNA 879 ncRNA 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2137 chr2 136666718 136666918 + -1.47449 NA Intergenic Intergenic -46632 NR_149318 20614 Mm.45953 NM_011428 ENSMUSG00000027273 Snap25 Bdr|GENA70|SNAP-25|SUP|sp synaptosomal-associated protein 25 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-483 chr10 94588935 94589135 + -1.47449 NA 3' UTR (NM_001168684, exon 4 of 4) 3' UTR (NM_001168684, exon 4 of 4) -2836 NR_106070 102466817 NR_106070 ENSMUSG00000098544 Mir7211 Gm27536|mmu-mir-7211 microRNA 7211 ncRNA 0.030000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1199 chr14 107909121 107909321 + -1.47449 NA Intergenic ORR1C1|LTR|ERVL-MaLR 1005018 NM_199065 76965 Mm.257268 NM_199065 ENSMUSG00000075478 Slitrk1 3200001I04Rik SLIT and NTRK-like family, member 1 protein-coding 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3050 chr6 110025132 110025332 + -1.47449 NA Intergenic Intergenic -620280 NM_001346640 108073 Mm.240881 NM_177328 ENSMUSG00000056755 Grm7 6330570A01Rik|BB176677|C030018L03|E130018M02Rik|Gpr1g|Gprc1g|SMN2|Tg(SMN2)89Ahmb|mGluR7 glutamate receptor, metabotropic 7 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3024 chr6 92521440 92521640 + -1.47449 NA intron (NM_001081146, intron 2 of 8) intron (NM_001081146, intron 2 of 8) 13321 NM_001134459 243548 Mm.248820 NM_001081146 ENSMUSG00000030020 Prickle2 6230400G14Rik|6720451F06Rik|mpk2 prickle planar cell polarity protein 2 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2886 chr5 126667579 126667779 + -1.47449 NA Intergenic Intergenic -363110 NR_040685 71247 Mm.399586 NR_040685 ENSMUSG00000105490 4933438B17Rik - RIKEN cDNA 4933438B17 gene ncRNA 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-525 chr10 118437129 118437329 + -1.47449 NA Intergenic Intergenic -3817 NM_008337 15978 Mm.240327 NM_008337 ENSMUSG00000055170 Ifng IFN-g|Ifg interferon gamma protein-coding 0.005000 0.343284 -52(TTTTTCTCTTTTACAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3326 chr8 42415704 42415904 + -1.47449 NA Intergenic Intergenic 588537 NR_045497 69966 Mm.416903 NR_045497 ENSMUSG00000102046 2810404M03Rik - RIKEN cDNA 2810404M03 gene ncRNA 0.005000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2606 chr4 71466309 71466509 + -1.47449 NA Intergenic Intergenic 734484 NM_001285532 21885 Mm.278444 NM_011599 ENSMUSG00000008305 Tle1 C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l transducin-like enhancer of split 1 protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1543 chr16 86836255 86836455 + -1.47449 NA Intergenic Lx9|LINE|L1 -29842 NR_153789 102635020 Mm.132956 NR_153789 Gm32461 - predicted gene, 32461 ncRNA 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3652 chr9 115548980 115549180 + -1.47449 NA Intergenic Intergenic 167261 NR_130329 100316675 NR_130329 ENSMUSG00000080409 Mir467h Mirn467h|mmu-mir-467h microRNA 467h ncRNA 0.005000 0.601990 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2115 chr2 126236998 126237198 + -1.47449 NA Intergenic Lx8|LINE|L1 84957 NM_026981 69185 Mm.29019 NM_026981 ENSMUSG00000023330 Dtwd1 1810033A06Rik DTW domain containing 1 protein-coding 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1931 chr2 5430102 5430302 + -1.47449 NA intron (NR_030601, intron 1 of 1) intron (NR_030601, intron 1 of 1) 50812 NR_030601 100124465 NR_030601 ENSMUSG00000078031 Mir466d Mirn466d microRNA 466d ncRNA 0.020000 0.467662 9(TATGCATAATTTAGT,+,0.00),9(TATGCATAATTTAGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1860 chr19 24526987 24527187 + -1.47449 NA intron (NM_008846, intron 1 of 14) intron (NM_008846, intron 1 of 14) 28785 NM_008846 18719 Mm.217214 NM_008846 ENSMUSG00000024867 Pip5k1b PI4P5K-I[b]|PIP5K1-beta|PIP5KIbeta|Pipk5b|STM7 phosphatidylinositol-4-phosphate 5-kinase, type 1 beta protein-coding 0.010000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1087 chr14 25338947 25339147 + -1.47449 NA Intergenic Intergenic -120138 NM_001310666 328365 Mm.227484 NM_183208 ENSMUSG00000007817 Zmiz1 BC065120|E330020C23|Gm10397|I920194n01|Rai17|Zimp10 zinc finger, MIZ-type containing 1 protein-coding 0.025000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2757 chr5 34271812 34272012 + -1.47449 NA intron (NM_001015039, intron 1 of 12) B3|SINE|B2 16412 NM_001015039 231125 Mm.113388 NM_001015039 ENSMUSG00000037224 Zfyve28 9630058O20Rik|Gm146|mKIAA1643 zinc finger, FYVE domain containing 28 protein-coding 0.020000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-375 chr10 29065503 29065703 + -1.47677 NA Intergenic L1_Mus4|LINE|L1 -78393 NM_026138 67412 Mm.390264 NM_026138 ENSMUSG00000038916 Soga3 6330407J23Rik SOGA family member 3 protein-coding 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2626 chr4 83814114 83814314 + -1.47756 NA intron (NM_001355549, intron 23 of 24) intron (NM_001355549, intron 23 of 24) 230665 NR_130998 78238 Mm.243903 NR_130998 ENSMUSG00000085217 6030471H07Rik - RIKEN cDNA 6030471H07 gene ncRNA 0.000000 0.283582 -57(ATTCAATAATTCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1906 chr19 48308447 48308647 + -1.47756 NA intron (NM_025696, intron 1 of 26) intron (NM_025696, intron 1 of 26) 102522 NM_025696 66673 Mm.70980 NM_025696 ENSMUSG00000063434 Sorcs3 6330404A12Rik|AW045579 sortilin-related VPS10 domain containing receptor 3 protein-coding 0.025000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1863 chr19 26327606 26327806 + -1.47756 NA Intergenic Intergenic -277454 NM_011416 67155 Mm.491146 NM_011416 ENSMUSG00000024921 Smarca2 2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2977 chr6 53862908 53863108 + -1.47756 NA Intergenic Intergenic -42183 NM_025817 66873 Mm.422727 NM_025817 ENSMUSG00000043496 Tril 1200009O22Rik|AI316813|mKIAA0644 TLR4 interactor with leucine-rich repeats protein-coding 0.010000 0.467662 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-49 chr10 29065344 29065544 + -1.48438 NA Intergenic L1_Mus4|LINE|L1 -78552 NM_026138 67412 Mm.390264 NM_026138 ENSMUSG00000038916 Soga3 6330407J23Rik SOGA family member 3 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-374 chr10 29065346 29065546 + -1.48438 NA Intergenic L1_Mus4|LINE|L1 -78550 NM_026138 67412 Mm.390264 NM_026138 ENSMUSG00000038916 Soga3 6330407J23Rik SOGA family member 3 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3537 chr9 49092942 49093142 + -1.48735 NA Intergenic Intergenic -9686 NM_001359460 80893 Mm.72799 NM_030709 ENSMUSG00000032268 Tmprss5 spinesin transmembrane protease, serine 5 (spinesin) protein-coding 0.010000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-859 chr12 101364235 101364435 + -1.48735 NA Intergenic Intergenic -40338 NM_173023 271036 Mm.84218 NM_173023 ENSMUSG00000047014 Catsperb 4931410B03|4932415G16Rik cation channel sperm associated auxiliary subunit beta protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2887 chr5 126673174 126673374 + -1.48735 NA Intergenic Intergenic -357515 NR_040685 71247 Mm.399586 NR_040685 ENSMUSG00000105490 4933438B17Rik - RIKEN cDNA 4933438B17 gene ncRNA 0.000000 0.398010 26(ATTTACATCAGACACA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2438 chr3 127994076 127994276 + -1.48735 NA Intergenic Intergenic 78005 NR_040552 329753 Mm.119720 NR_040552 ENSMUSG00000104763 9830132P13Rik 9830132P13 RIKEN cDNA 9830132P13 gene ncRNA 0.000000 0.328358 23(ATATGTATGACAGAAG,-,0.00),77(TTTTTTTAATTCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3729 chrX 98874968 98875168 + -1.48735 NA intron (NM_001313756, intron 2 of 2) intron (NM_001313756, intron 2 of 2) 15957 NM_001313754 94190 Mm.33536 NM_052976 ENSMUSG00000031214 Ophn1 C130037N19Rik|Wtgr oligophrenin 1 protein-coding 0.010000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-742 chr12 21357507 21357707 + -1.48735 NA intron (NR_102380, intron 1 of 15) intron (NR_102380, intron 1 of 15) 16025 NM_001291871 11491 Mm.27681 NM_009615 ENSMUSG00000052593 Adam17 CD156b|Tace a disintegrin and metallopeptidase domain 17 protein-coding 0.010000 0.442786 31(TTTAGCATGACAGTGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3766 chrX 159616698 159616898 + -1.48735 NA Intergenic RLTR22_Mur|LTR|ERVK -10474 NM_001135727 58194 Mm.286495 NM_021389 ENSMUSG00000040990 Sh3kbp1 1200007H22Rik|1700125L08Rik|5830464D22Rik|AI447724|Cin85|IN85|Ruk|Seta SH3-domain kinase binding protein 1 protein-coding 0.000000 0.343284 37(AATGCACATGCATG,-,0.00),77(TATGCATATTCACT,+,0.00),77(TATGCATATTCACT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3519 chr9 35159322 35159522 + -1.48735 NA intron (NM_027030, intron 2 of 5) intron (NM_027030, intron 2 of 5) 16565 NM_027030 69305 Mm.229110 NM_027030 ENSMUSG00000032040 Dcps 1700001E16Rik|AA408441 decapping enzyme, scavenger protein-coding 0.000000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2082 chr2 108023186 108023386 + -1.48735 NA Intergenic Intergenic 732697 NM_021275 16492 Mm.142718 NM_021275 ENSMUSG00000042604 Kcna4 Kv1.4 potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding 0.010000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2548 chr4 34262255 34262455 + -1.48735 NA Intergenic Intergenic -212288 NM_026293 67652 Mm.55848 NM_026293 ENSMUSG00000028264 Spaca1 1700124L11Rik|4930540L03Rik sperm acrosome associated 1 protein-coding 0.010000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3771 chrX 164972767 164972967 + -1.48735 NA intron (NM_029730, intron 2 of 14) intron (NM_029730, intron 2 of 14) 7508 NM_029730 76763 Mm.291758 NM_029730 ENSMUSG00000061778 Mospd2 2410013I23Rik motile sperm domain containing 2 protein-coding 0.000000 0.268657 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1701 chr18 22844856 22845056 + -1.48735 NA intron (NM_001361223, intron 6 of 11) MIRc|SINE|MIR 193707 NM_001161483 319211 Mm.209896 NM_199024 ENSMUSG00000041923 Nol4 1700013J13Rik|4930568N03Rik|Gm1262 nucleolar protein 4 protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3313 chr8 36142873 36143073 + -1.48735 NA intron (NM_172911, intron 5 of 5) intron (NM_172911, intron 5 of 5) -13037 NR_151736 330738 Mm.128075 NR_151736 ENSMUSG00000109704 Gm38414 A230084N10|Gm45568 predicted gene, 38414 ncRNA 0.005000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1004 chr13 90739903 90740103 + -1.48735 NA Intergenic Intergenic 165352 NM_001145879 435376 Mm.292579 NM_001145879 ENSMUSG00000078958 Atp6ap1l EG435376 ATPase, H+ transporting, lysosomal accessory protein 1-like protein-coding 0.005000 0.412935 35(ATTTCCATTACATAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-921 chr13 25986319 25986519 + -1.48735 NA Intergenic Intergenic -20103 NR_045062 100503530 Mm.86763 NR_045062 ENSMUSG00000086531 Gm11351 - predicted gene 11351 ncRNA 0.000000 0.417910 -50(TTATAAATGACAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2764 chr5 41930832 41931032 + -1.48831 NA Intergenic Intergenic 39590 NR_105842 102465225 NR_105842 ENSMUSG00000098264 Mir6414 Gm27518|mmu-mir-6414 microRNA 6414 ncRNA 0.005000 0.353234 5(TCATTTTTATGTAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-52 chr1 34250306 34250506 + -1.48831 NA intron (NM_001276764, intron 65 of 102) intron (NM_001276764, intron 65 of 102) 90146 NM_010081 13518 Mm.336625 NM_010081 ENSMUSG00000026131 Dst 2310001O04Rik|A830042E19Rik|AW554249|BP230|BPAG1-n|Bpag|Bpag1|Macf2|ah|athetoid|dt|mKIAA0728|nmf203|nmf339 dystonin protein-coding 0.025000 0.462687 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-362 chr3 77483483 77483683 + -1.48998 NA Intergenic Intergenic 1408000 NM_001253719 213262 Mm.379337 NM_178673 ENSMUSG00000034098 Fstl5 9130207J01Rik follistatin-like 5 protein-coding 0.000000 0.278607 11(TATGTATATGCATA,+,0.00),11(TATGTATATGCATA,-,0.00) -9(ATTTACATGACTAAGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-754 chr12 29985691 29985891 + -1.49014 NA intron (NM_181395, intron 8 of 22) intron (NM_181395, intron 8 of 22) 47755 NM_181395 69675 Mm.251774 NM_181395 ENSMUSG00000020674 Pxdn 2310075M15Rik|C85409|E330004E07|VPO1|mKIAA0230 peroxidasin protein-coding 0.010000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1434 chr16 24712955 24713155 + -1.49014 NA intron (NM_178665, intron 7 of 12) intron (NM_178665, intron 7 of 12) -8800 NM_001145954 210126 Mm.209385 NM_178665 ENSMUSG00000033306 Lpp 9430020K16Rik|AA959454|AU024130|B130055L10Rik|C79715|D630048H16 LIM domain containing preferred translocation partner in lipoma protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1792 chr18 68711259 68711459 + -1.49014 NA Intergenic Intergenic -28041 NR_105774 102465183 NR_105774 ENSMUSG00000099300 Mir6356 Gm27461|mmu-mir-6356 microRNA 6356 ncRNA 0.025000 0.587065 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-94 chr1 60936493 60936693 + -1.49014 NA Intergenic Intergenic 27568 NM_001281976 12477 Mm.390 NM_009843 ENSMUSG00000026011 Ctla4 Cd152|Ctla-4|Ly-56 cytotoxic T-lymphocyte-associated protein 4 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2741 chr5 19387625 19387825 + -1.49014 NA intron (NM_001170746, intron 1 of 22) Lx7|LINE|L1 160679 NM_001170746 50791 Mm.332231 NM_015823 ENSMUSG00000040003 Magi2 AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705 membrane associated guanylate kinase, WW and PDZ domain containing 2 protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3250 chr7 136840525 136840725 + -1.49014 NA Intergenic Intergenic -53986 NM_008598 17314 Mm.440219 NM_008598 ENSMUSG00000054612 Mgmt AGT|AI267024|Agat O-6-methylguanine-DNA methyltransferase protein-coding 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1811 chr18 81186389 81186589 + -1.49014 NA Intergenic Intergenic -199468 NM_001369133 20689 Mm.215917 NM_178280 ENSMUSG00000024565 Sall3 B130022O04Rik|Msal|Msal-1|Sal|Salt|Spalt spalt like transcription factor 3 protein-coding 0.010000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-566 chr11 19633153 19633353 + -1.49084 NA Intergenic L1M5|LINE|L1 -291189 NM_033523 114716 Mm.266627 NM_033523 ENSMUSG00000045671 Spred2 C79158 sprouty-related EVH1 domain containing 2 protein-coding 0.000000 0.273632 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1474 chr16 52042303 52042503 + -1.49115 NA intron (NM_001033238, intron 2 of 17) intron (NM_001033238, intron 2 of 17) 10854 NM_001033238 208650 Mm.328206 NM_001033238 ENSMUSG00000022637 Cblb AI429560|AI851073|Cbl-b Casitas B-lineage lymphoma b protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-782 chr12 45791613 45791813 + -1.49115 NA Intergenic Intergenic -717230 NM_144552 217517 Mm.285400 NM_144552 ENSMUSG00000046314 Stxbp6 BC024598|C85317 syntaxin binding protein 6 (amisyn) protein-coding 0.005000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-354 chr3 57677871 57678071 + -1.49277 NA intron (NM_001033349, intron 2 of 3) RMER1B|Other|Other 14566 NM_001033349 242037 Mm.291091 NM_001033349 ENSMUSG00000074591 Ankub1 Gm410 ankrin repeat and ubiquitin domain containing 1 protein-coding 0.000000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-407 chr10 46045840 46046040 + -1.49277 NA Intergenic Intergenic -198808 NR_028274 100302593 NR_028274 ENSMUSG00000095118 Snord14d Gm23710 small nucleolar RNA, C/D box 14D snoRNA 0.020000 0.517413 16(CTATTGGCATGCTGAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-491 chr7 51539405 51539605 + -1.49309 NA intron (NR_073508, intron 5 of 20) intron (NR_073508, intron 5 of 20) 28476 NR_073508 233246 Mm.254431 NM_177694 ENSMUSG00000055489 Ano5 9330162L24|Gdd1|Tmem16e anoctamin 5 protein-coding 0.000000 0.407960 -80(TTATTTTCATGCACAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-67 chr10 74419305 74419505 + -1.49309 NA intron (NM_001142747, intron 19 of 26) RLTR22_Mur|LTR|ERVK -547772 NM_010311 14687 Mm.32595 NM_010311 ENSMUSG00000040009 Gnaz AI847979|Gz guanine nucleotide binding protein, alpha z subunit protein-coding 0.010000 0.393035 22(ACTGCATATGTATC,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-540 chr8 111758998 111759198 + -1.49309 NA Intergenic Intergenic -15249 NM_009954 12927 Mm.3758 NM_009954 ENSMUSG00000031955 Bcar1 AI385681|Cas|Crkas breast cancer anti-estrogen resistance 1 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1944 chr2 10645805 10646005 + -1.49309 NA Intergenic Intergenic 127750 NR_035418 100316831 NR_035418 ENSMUSG00000080594 Mir669h Mirn669h|mir-669h|mmu-mir-669h microRNA 669h ncRNA 0.005000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2579 chr4 52943435 52943635 + -1.49530 NA Intergenic Intergenic -27094 NM_146607 258600 Mm.377586 NM_146607 ENSMUSG00000070983 Olfr270 MOR262-9 olfactory receptor 270 protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-849 chr12 94764475 94764675 + -1.49793 NA Intergenic Lx5|LINE|L1 837237 NR_106201 102466888 NR_106201 ENSMUSG00000098931 Mir8099-2 Gm27692|mmu-mir-8099-2 microRNA 8099-2 ncRNA 0.000000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2716 chr5 7254575 7254775 + -1.49793 NA intron (NM_001163223, intron 1 of 3) intron (NM_001163223, intron 1 of 3) -49489 NM_027603 70920 Mm.158494 NM_027603 ENSMUSG00000040514 Tex47 4921511H03Rik testis expressed 47 protein-coding 0.010000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2715 chr5 5700556 5700756 + -1.49793 NA Intergenic Intergenic -6088 NM_028734 74051 Mm.274956 NM_028734 ENSMUSG00000015653 Steap2 4921538B17Rik|AI930049|AW045895|IPCA-1|IPCA1|PCANAP1|STAMP1|STMP six transmembrane epithelial antigen of prostate 2 protein-coding 0.000000 0.452736 1(CCAATCTTATGCAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1360 chr15 81164971 81165171 + -1.49793 NA intron (NM_001082536, intron 1 of 13) intron (NM_001082536, intron 1 of 13) 25665 NM_001082536 223701 Mm.439814 NM_153049 ENSMUSG00000042292 Mrtfa AMKL|Bsac|Mal|Mkl1|Mrtf-A myocardin related transcription factor A protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1516 chr16 72855023 72855223 + -1.49793 NA intron (NM_019413, intron 2 of 28) intron (NM_019413, intron 2 of 28) 191974 NM_019413 19876 Mm.310772 NM_019413 ENSMUSG00000022883 Robo1 AW494633|AW742721|DUTT1|Gm310 roundabout guidance receptor 1 protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1401 chr15 102146969 102147169 + -1.49793 NA intron (NM_008344, intron 1 of 3) intron (NM_008344, intron 1 of 3) 2883 NM_008344 16012 Mm.358609 NM_008344 ENSMUSG00000023046 Igfbp6 IGFBP-6 insulin-like growth factor binding protein 6 protein-coding 0.000000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3427 chr8 104753356 104753556 + -1.49793 NA Intergenic Intergenic 19453 NM_001190330 102022 Mm.212983 NM_133960 ENSMUSG00000055730 Ces2a 9130231C15Rik|AI266984|Ces6 carboxylesterase 2A protein-coding 0.005000 0.338308 -42(TTTTGCATAAAAATAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3721 chrX 88459144 88459344 + -1.49793 NA Intergenic Intergenic 300309 NR_035440 100316809 NR_035440 ENSMUSG00000084535 Mir1906-1 Mir1906|Mirn1906|mmu-mir-1906|mmu-mir-1906-1 microRNA 1906-1 ncRNA 0.000000 0.303483 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-193 chr1 110725007 110725207 + -1.49793 NA Intergenic Intergenic 252486 NM_001081386 227485 Mm.322070 NM_001081386 ENSMUSG00000047216 Cdh19 - cadherin 19, type 2 protein-coding 0.000000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1308 chr15 48089083 48089283 + -1.49793 NA intron (NM_001081391, intron 13 of 70) intron (NM_001081391, intron 13 of 70) 702806 NM_001081391 239420 Mm.309363 NM_001081391 ENSMUSG00000022311 Csmd3 4930500N14Rik|mKIAA1894 CUB and Sushi multiple domains 3 protein-coding 0.005000 0.313433 60(TTATTCTCTTGCATAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-12 chr1 12683237 12683437 + -1.49802 NA Intergenic Intergenic -9093 NM_001198566 240725 Mm.45563 NM_172294 ENSMUSG00000016918 Sulf1 AI467640|AW121680|mKIAA1077 sulfatase 1 protein-coding 0.010000 0.378109 37(CTATTATTTTGCAGAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2618 chr4 80980567 80980767 + -1.49847 NA Intergenic Intergenic 69981 NM_026821 52829 Mm.273986 NM_026821 ENSMUSG00000048706 Lurap1l 1110029A09Rik|AV077978|AV175137|D4Bwg0951e|WI-13707|bM350F23.1 leucine rich adaptor protein 1-like protein-coding 0.000000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2954 chr6 36365285 36365485 + -1.49847 NA intron (NR_015589, intron 3 of 5) intron (NR_015589, intron 3 of 5) -22699 NM_203491 243764 Mm.448632 NM_203491 ENSMUSG00000045613 Chrm2 AChR-M2|Chrm-2|M2 cholinergic receptor, muscarinic 2, cardiac protein-coding 0.005000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3374 chr8 74333085 74333285 + -1.49847 NA Intergenic Intergenic -539989 NM_027837 71597 Mm.158735 NM_027837 ENSMUSG00000031621 Isx 9130012O13Rik|Pix-1 intestine specific homeobox protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-992 chr13 81970905 81971105 + -1.49847 NA Intergenic Intergenic 187758 NM_007684 12626 Mm.12481 NM_007684 ENSMUSG00000021537 Cetn3 MmCEN3 centrin 3 protein-coding 0.005000 0.298507 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2413 chr3 121920955 121921155 + -1.49847 NA Intergenic Intergenic -32174 NM_172525 214137 Mm.229287 NM_172525 ENSMUSG00000039831 Arhgap29 6720461J18Rik|A830014I19|AU040217|B130017I01Rik|C76601|Parg1 Rho GTPase activating protein 29 protein-coding 0.010000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3471 chr9 3344087 3344287 + -1.49847 NA intron (NM_026303, intron 3 of 11) L1_Mur3|LINE|L1 8956 NM_026303 67667 Mm.116968 NM_026303 ENSMUSG00000025899 Alkbh8 4930562C03Rik|8030431D03Rik|9430088N01Rik|Abh8 alkB homolog 8, tRNA methyltransferase protein-coding 0.005000 0.298507 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2784 chr5 56013013 56013213 + -1.49847 NA Intergenic ORR1D1|LTR|ERVL-MaLR 1663121 NR_038045 330086 Mm.254449 NM_177871 ENSMUSG00000105912 Gm10440 D130065D13 predicted gene 10440 ncRNA 0.005000 0.432836 23(CATTCAAATGCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1598 chr17 34917890 34918090 + -1.49847 NA intron (NM_023557, intron 4 of 20) intron (NM_023557, intron 4 of 20) 3524 NM_023557 70129 Mm.183126 NM_023557 ENSMUSG00000007034 Slc44a4 2210409B01Rik|NG22|mTPPT1 solute carrier family 44, member 4 protein-coding 0.025000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3763 chrX 153127123 153127323 + -1.49847 NA intron (NM_001034894, intron 3 of 3) intron (NM_001034894, intron 3 of 3) 8435 NM_001034894 436240 Mm.373353 NM_001034894 ENSMUSG00000071665 Foxr2 EG436240|Foxn6 forkhead box R2 protein-coding 0.000000 0.248756 -19(TATAAATAATGGATT,+,0.00),-19(TATAAATAATGGATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-594 chr11 35948593 35948793 + -1.49847 NA intron (NM_170779, intron 1 of 22) intron (NM_170779, intron 1 of 22) 31834 NM_170779 211652 Mm.31267 NM_170779 ENSMUSG00000018849 Wwc1 AA408228|AU017197|BC037006|Kibra WW, C2 and coiled-coil domain containing 1 protein-coding 0.010000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1654 chr17 81402602 81402802 + -1.49847 NA intron (NM_001286684, intron 10 of 11) intron (NM_001286684, intron 10 of 11) 335685 NM_001286684 20541 Mm.265834 NM_011406 ENSMUSG00000054640 Slc8a1 AI852629|AV344025|D930008O12Rik|Ncx1 solute carrier family 8 (sodium/calcium exchanger), member 1 protein-coding 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1321 chr15 53171401 53171601 + -1.49886 NA intron (NM_010162, intron 1 of 10) intron (NM_010162, intron 1 of 10) 174682 NM_010162 14042 Mm.309395 NM_010162 ENSMUSG00000061731 Ext1 AA409028 exostoses (multiple) 1 protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1409 chr16 7175105 7175305 + -1.50135 NA intron (NM_183188, intron 1 of 12) intron (NM_183188, intron 1 of 12) 105370 NM_183188 268859 Mm.370334 NM_021477 ENSMUSG00000008658 Rbfox1 A2bp|A2bp1|Hrnbp1|fox-1 RNA binding protein, fox-1 homolog (C. elegans) 1 protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-365 chr10 24165579 24165779 + -1.50135 NA intron (NM_001358563, intron 2 of 9) intron (NM_001358563, intron 2 of 9) 16362 NM_016797 53331 Mm.248042 NM_016797 ENSMUSG00000019998 Stx7 AI315064|AI317144|AW107239|Syn7 syntaxin 7 protein-coding 0.005000 0.398010 -69(CTTTATTCATGAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-428 chr10 58901636 58901836 + -1.50135 NA intron (NM_172788, intron 1 of 9) L1_Mur3|LINE|L1 88377 NM_172788 237353 Mm.333078 NM_172788 ENSMUSG00000037990 Sh3rf3 4831416G18Rik|Igfbp5-ip|Sh3md4|Sh3rf31 SH3 domain containing ring finger 3 protein-coding 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2903 chr5 142415689 142415889 + -1.50257 NA intron (NM_199068, intron 1 of 8) intron (NM_199068, intron 1 of 8) 14292 NM_199068 17425 Mm.24214 NM_010812 ENSMUSG00000056493 Foxk1 A630048H08Rik|AI463295|Gm10868|Mnf forkhead box K1 protein-coding 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2169 chr2 150711531 150711731 + -1.50257 NA Intergenic Intergenic -22494 NM_054068 114889 Mm.207061 NM_054068 ENSMUSG00000033080 Vsx1 CHX10-like visual system homeobox 1 protein-coding 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2945 chr6 27369022 27369222 + -1.50257 NA intron (NM_008174, intron 8 of 10) intron (NM_008174, intron 8 of 10) 567628 NR_030420 735266 NR_030420 ENSMUSG00000076067 Mir592 Mirn592|mir-592|mmu-mir-592 microRNA 592 ncRNA 0.000000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-533 chr10 123184154 123184354 + -1.50257 NA intron (NM_001301628, intron 1 of 20) intron (NM_001301628, intron 1 of 20) 12765 NM_001301628 14479 Mm.244209 NM_027604 ENSMUSG00000020124 Usp15 4921514G19Rik|AI327321|E430033I05Rik|Gcap18 ubiquitin specific peptidase 15 protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3369 chr8 72343228 72343428 + -1.50257 NA intron (NM_001289859, intron 21 of 21) intron (NM_001289859, intron 21 of 21) 24266 NM_008452 16598 Mm.26938 NM_008452 ENSMUSG00000055148 Klf2 Lklf Kruppel-like factor 2 (lung) protein-coding 0.010000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-210 chr1 119730978 119731178 + -1.50257 NA intron (NM_019933, intron 10 of 26) RLTR13G|LTR|ERVK -82078 NM_145506 226352 Mm.253156 NM_145506 ENSMUSG00000026383 Epb41l5 1700030C16Rik|AL022914|BE37|E230025E14Rik|Epb4.1l5|Lulu1|NBL5 erythrocyte membrane protein band 4.1 like 5 protein-coding 0.010000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-977 chr13 73071687 73071887 + -1.50257 NA Intergenic Intergenic 157313 NR_126459 75361 Mm.385732 NR_126459 4930555K05Rik - RIKEN cDNA 4930555K05 gene ncRNA 0.010000 0.492537 0(CCTTCATATTCATC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2496 chr3 153710850 153711050 + -1.50257 NA intron (NM_011372, intron 1 of 4) (CAGA)n|Simple_repeat|Simple_repeat 14183 NM_011372 20447 Mm.296453 NM_011372 ENSMUSG00000052544 St6galnac3 Siat7c ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3 protein-coding 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3022 chr6 91942888 91943088 + -1.50257 NA intron (NM_198668, intron 15 of 19) intron (NM_198668, intron 15 of 19) -35977 NM_172731 232237 Mm.295740 NM_172731 ENSMUSG00000034037 Fgd5 C330025N11Rik|ZFYVE23|mFLJ00274 FYVE, RhoGEF and PH domain containing 5 protein-coding 0.025000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3072 chr6 127834424 127834624 + -1.50257 NA Intergenic Intergenic -46381 NR_106092 102466996 NR_106092 ENSMUSG00000104804 Mir7233 mmu-mir-7233 microRNA 7233 ncRNA 0.010000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1328 chr15 54776641 54776841 + -1.50257 NA Intergenic Intergenic 30831 NM_010930 18133 Mm.5167 NM_010930 ENSMUSG00000037362 Ccn3 C130088N23Rik|Nov cellular communication network factor 3 protein-coding 0.005000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1037 chr13 112136620 112136820 + -1.50257 NA Intergenic L1MEd|LINE|L1 -151731 NM_029898 77318 Mm.159895 NM_029898 ENSMUSG00000049985 Ankrd55 C030011J08Rik ankyrin repeat domain 55 protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1636 chr17 70010152 70010352 + -1.50257 NA intron (NM_001347411, intron 1 of 14) intron (NM_001347411, intron 1 of 14) 41179 NM_001347412 224997 Mm.311840 NM_027712 ENSMUSG00000003279 Dlgap1 4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162 DLG associated protein 1 protein-coding 0.000000 0.358209 30(TATACTTATGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3197 chr7 108992300 108992500 + -1.50257 NA Intergenic Intergenic -18480 NM_021885 22141 Mm.439722 NM_021885 ENSMUSG00000031028 Tub rd5|tub tubby bipartite transcription factor protein-coding 0.015000 0.572139 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3091 chr6 149078764 149078964 + -1.50257 NA intron (NM_177192, intron 2 of 20) ORR1B1|LTR|ERVL-MaLR 22816 NM_177192 320560 Mm.426874 NM_177192 ENSMUSG00000030313 Dennd5b 9330160C06Rik|AI852444|D030011O10Rik|Gm17524 DENN/MADD domain containing 5B protein-coding 0.000000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-846 chr12 93100018 93100218 + -1.50475 NA Intergenic Intergenic 344705 NR_126436 75295 Mm.243878 NR_126436 ENSMUSG00000113164 4930559C10Rik - RIKEN cDNA 4930559C10 gene ncRNA 0.005000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1602 chr17 42150105 42150305 + -1.50662 NA Intergenic Intergenic -165742 NM_028474 627626 Mm.390999 NM_028474 ENSMUSG00000042256 Ptchd4 3110082D06Rik|Gm321 patched domain containing 4 protein-coding 0.015000 0.398010 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-515 chr8 23900257 23900457 + -1.50662 NA intron (NM_001277239, intron 4 of 7) intron (NM_001277239, intron 4 of 7) 230696 NM_177086 320158 Mm.121274 NM_177086 ENSMUSG00000037492 Zmat4 9630048M01Rik zinc finger, matrin type 4 protein-coding 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3043 chr6 104135789 104135989 + -1.50662 NA Intergenic Intergenic -171205 NR_144494 100846987 NR_144494 Pou5f1-rs5 Gm21054|Oct4P5|Otf3-rs5|Otf3e POU domain, class 5, transcription factor 1, related sequence 5 pseudo 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2827 chr5 86630581 86630781 + -1.50825 NA intron (NM_178730, intron 1 of 10) intron (NM_178730, intron 1 of 10) 1743 NM_178730 243083 Mm.106867 NM_178730 ENSMUSG00000048764 Tmprss11f 4631408C20|4732406D01Rik transmembrane protease, serine 11f protein-coding 0.000000 0.293532 -11(ATTTCCATGACAAAAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-446 chr10 70108995 70109195 + -1.50825 NA intron (NM_001111121, intron 1 of 8) intron (NM_001111121, intron 1 of 8) 11974 NM_001111121 76551 Mm.281741 NM_001111121 ENSMUSG00000048701 Ccdc6 2810012H18Rik|AA536681|AA960498|AW061011 coiled-coil domain containing 6 protein-coding 0.010000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2416 chr3 122130792 122130992 + -1.50825 NA intron (NM_007378, intron 24 of 49) intron (NM_007378, intron 24 of 49) 86432 NM_007378 11304 Mm.3918 NM_007378 ENSMUSG00000028125 Abca4 AW050280|Abc10|Abcr|D430003I15Rik|RmP ATP-binding cassette, sub-family A (ABC1), member 4 protein-coding 0.010000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3194 chr7 105458724 105458924 + -1.50825 NA Intergenic Intergenic 23373 NM_028444 109042 Mm.3124 NM_028444 ENSMUSG00000037060 Cavin3 3110015B12Rik|6330514M23Rik|Prkcdbp|SRBC caveolae associated 3 protein-coding 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-197 chr1 112043124 112043324 + -1.50825 NA Intergenic Intergenic -178306 NM_001081316 319901 Mm.103468 NM_001081316 ENSMUSG00000038702 Dsel 9330132E09Rik|DS-epi2 dermatan sulfate epimerase-like protein-coding 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2541 chr4 31750227 31750427 + -1.50825 NA Intergenic Intergenic -213780 NM_009316 26409 Mm.258589 NM_009316 ENSMUSG00000028284 Map3k7 B430101B05|C87327|Tak1 mitogen-activated protein kinase kinase kinase 7 protein-coding 0.005000 0.368159 -10(TTATAGTCATGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2515 chr4 11493870 11494070 + -1.50825 NA intron (NM_001081183, intron 1 of 24) intron (NM_001081183, intron 1 of 24) 8012 NM_001081183 66185 Mm.331487 NM_001081183 ENSMUSG00000040720 Virma 1110037F02Rik|4930422M05Rik|Kiaa1429|mKIAA1429 vir like m6A methyltransferase associated protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3648 chr9 112799766 112799966 + -1.50894 NA Intergenic Intergenic 543292 NR_033433 620760 Mm.259863 NR_015468 ENSMUSG00000087038 2900079G21Rik C130083B14|Gm6179 RIKEN cDNA 2900079G21 gene ncRNA 0.000000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-478 chr6 78907530 78907730 + -1.50894 NA Intergenic Intergenic -124412 NR_040301 100504701 Mm.400420 NR_040301 ENSMUSG00000108072 Gm20362 - predicted gene, 20362 ncRNA 0.000000 0.338308 77(TTTAAAATGACAAAGT,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-572 chr9 112799693 112799893 + -1.50894 NA Intergenic Intergenic 543219 NR_033433 620760 Mm.259863 NR_015468 ENSMUSG00000087038 2900079G21Rik C130083B14|Gm6179 RIKEN cDNA 2900079G21 gene ncRNA 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3372 chr8 73571370 73571570 + -1.51046 NA Intergenic RLTR13D4|LTR|ERVK -217930 NM_010687 16795 Mm.324371 NM_010687 ENSMUSG00000004383 Large1 BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd LARGE xylosyl- and glucuronyltransferase 1 protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1255 chr15 14299831 14300031 + -1.51046 NA Intergenic L1Md_F2|LINE|L1 -1126256 NM_007666 12563 Mm.57048 NM_007666 ENSMUSG00000039385 Cdh6 cad6 cadherin 6 protein-coding 0.015000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-845 chr12 93099621 93099821 + -1.51272 NA Intergenic RMER4A|LTR|ERVK 345102 NR_126436 75295 Mm.243878 NR_126436 ENSMUSG00000113164 4930559C10Rik - RIKEN cDNA 4930559C10 gene ncRNA 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2109 chr2 123799763 123799963 + -1.51272 NA Intergenic Intergenic -290106 NM_001290997 214968 Mm.330536 NM_172537 ENSMUSG00000027200 Sema6d 1110067B02Rik|AA409156|D330011G23|mKIAA1479 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D protein-coding 0.005000 0.318408 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-331 chr2 123799839 123800039 + -1.51272 NA Intergenic Intergenic -290030 NM_001290997 214968 Mm.330536 NM_172537 ENSMUSG00000027200 Sema6d 1110067B02Rik|AA409156|D330011G23|mKIAA1479 sema domain, transmembrane domain (TM), and cytoplasmic domain, (semaphorin) 6D protein-coding 0.000000 0.338308 66(CTATTGTTGTGGTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2946 chr6 27606529 27606729 + -1.51309 NA intron (NM_008174, intron 7 of 10) intron (NM_008174, intron 7 of 10) 330121 NR_030420 735266 NR_030420 ENSMUSG00000076067 Mir592 Mirn592|mir-592|mmu-mir-592 microRNA 592 ncRNA 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-170 chr1 99690213 99690413 + -1.51309 NA Intergenic Intergenic -82088 NM_172851 241175 Mm.251301 NM_172851 ENSMUSG00000067028 Cntnap5b C230078M14Rik|Caspr5-2 contactin associated protein-like 5B protein-coding 0.005000 0.373134 -16(CTCTTCTCATTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2857 chr5 101834013 101834213 + -1.51309 NA 3' UTR (NM_172882, exon 67 of 67) 3' UTR (NM_172882, exon 67 of 67) 68983 NM_173370 74596 Mm.46764 NM_173370 ENSMUSG00000029330 Cds1 4833409J18Rik|AI314024|AW125888 CDP-diacylglycerol synthase 1 protein-coding 0.025000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1888 chr19 38364065 38364265 + -1.51309 NA Intergenic Intergenic -31815 NM_175507 240660 Mm.262085 NM_175507 ENSMUSG00000044026 Slc35g1 AA590464|D330039I19Rik|Tmem20 solute carrier family 35, member G1 protein-coding 0.020000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-362 chr10 23974533 23974733 + -1.51309 NA Intergenic Intergenic 3927 NM_001009574 215854 Mm.377236 NM_001009574 ENSMUSG00000069706 Taar5 Gm227|taR-5 trace amine-associated receptor 5 protein-coding 0.015000 0.407960 39(CATAAATTAGTCATG,+,0.00),39(CATAAATTAGTCATG,-,0.00) 43(AATTAGTCATGCTAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-553 chr11 12606065 12606265 + -1.51309 NA Intergenic Intergenic -141205 NM_172496 12808 Mm.22847 NM_172496 ENSMUSG00000020173 Cobl - cordon-bleu WH2 repeat protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2535 chr4 26645164 26645364 + -1.51309 NA intron (NR_040656, intron 2 of 2) (CA)n|Simple_repeat|Simple_repeat 60185 NR_040656 75360 Mm.67233 NR_040656 ENSMUSG00000086257 4930548K13Rik - RIKEN cDNA 4930548K13 gene ncRNA 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-151 chr1 83634818 83635018 + -1.51309 NA Intergenic MTD|LTR|ERVL-MaLR -226718 NM_001356547 77629 Mm.154303 NM_172430 ENSMUSG00000026163 Sphkap 4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678 SPHK1 interactor, AKAP domain containing protein-coding 0.000000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2992 chr6 71415317 71415517 + -1.51309 NA intron (NM_001355745, intron 2 of 9) intron (NM_001355745, intron 2 of 9) 25220 NM_024288 68477 Mm.28474 NM_024288 ENSMUSG00000002222 Rmnd5a 1110007A06Rik|AJ237586|AW125795|Gid2|MTA.D02.090 required for meiotic nuclear division 5 homolog A protein-coding 0.000000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-541 chr10 129103070 129103270 + -1.51309 NA Intergenic Intergenic -9198 NM_146864 258863 Mm.377725 NM_146864 ENSMUSG00000050198 Olfr768 MOR114-4 olfactory receptor 768 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1129 chr14 64757099 64757299 + -1.51309 NA intron (NM_001081177, intron 21 of 39) intron (NM_001081177, intron 21 of 39) 104658 NM_001081177 16554 Mm.23611 NM_001081177 ENSMUSG00000060012 Kif13b 5330429L19Rik|6030414C01|AI429803|C130021D12Rik|GAKIN kinesin family member 13B protein-coding 0.005000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2749 chr5 29071317 29071517 + -1.51309 NA Intergenic L1_Mus1|LINE|L1 -124576 NM_001289757 56874 Mm.87352 NM_021470 ENSMUSG00000029130 Rnf32 1700009J01Rik|2700025B22Rik|4930542N22Rik|Lmbr2 ring finger protein 32 protein-coding 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-16 chr1 13702599 13702799 + -1.51309 NA TTS (NM_001011873) TTS (NM_001011873) 33928 NM_001011873 381246 Mm.311142 NM_001011873 ENSMUSG00000067813 Xkr9 Gm1620|XRG9 X-linked Kx blood group related 9 protein-coding 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-202 chr1 113163328 113163528 + -1.51309 NA Intergenic Intergenic -746510 NR_157044 102635484 NR_157044 Gm32810 Gm18406 predicted gene, 32810 ncRNA 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2574 chr4 50666110 50666310 + -1.51309 NA Intergenic Intergenic -550468 NM_001162865 74914 Mm.159368 NM_001162865 ENSMUSG00000039555 Cylc2 4930488P18Rik cylicin, basic protein of sperm head cytoskeleton 2 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3542 chr9 52772320 52772520 + -1.51309 NA intron (NR_045333, intron 2 of 4) L1MA6|LINE|L1 92557 NR_045333 382139 Mm.335162 NR_045333 ENSMUSG00000111020 Gm1715 - predicted gene 1715 ncRNA 0.000000 0.368159 -75(ATATAAATGACTAACA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-272 chr18 39911003 39911203 + -1.51597 NA Intergenic Intergenic 137606 NM_011033 18459 Mm.9493 NM_011033 ENSMUSG00000051732 Pabpc2 Pabp|Pabp+|Pabp2 poly(A) binding protein, cytoplasmic 2 protein-coding 0.005000 0.487562 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-579 chrX 100449390 100449590 + -1.51609 NA Intergenic Intergenic -6773 NM_001290395 245532 Mm.118171 NM_177746 ENSMUSG00000031220 Awat2 9430062J17Rik|ARAT|Dgat2l4|WS acyl-CoA wax alcohol acyltransferase 2 protein-coding 0.000000 0.422886 21(TCTTTTTCATGTACAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-966 chr13 56306598 56306798 + -1.51695 NA Intergenic Intergenic -10147 NM_019568 57266 Mm.30211 NM_019568 ENSMUSG00000021508 Cxcl14 1110031L23Rik|1200006I23Rik|AI414372|BMAC|BRAK|KS1|Kec|MIP-2g|MIP2gamma|NJAC|Scyb14|bolekine chemokine (C-X-C motif) ligand 14 protein-coding 0.005000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1677 chr18 8778913 8779113 + -1.51695 NA Intergenic Intergenic -433843 NM_008058 14370 Mm.184289 NM_008058 ENSMUSG00000036904 Fzd8 Fz8 frizzled class receptor 8 protein-coding 0.015000 0.368159 -82(TATCCATATTTATA,+,0.00),-82(TATCCATATTTATA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-290 chr19 26327704 26327904 + -1.51695 NA Intergenic Intergenic -277356 NM_011416 67155 Mm.491146 NM_011416 ENSMUSG00000024921 Smarca2 2610209L14Rik|SNF2alpha|Snf2l2|brahma|brm SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2 protein-coding 0.005000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3058 chr6 116325676 116325876 + -1.52219 NA intron (NM_001290338, intron 7 of 8) intron (NM_001290338, intron 7 of 8) -12246 NM_001302385 71779 Mm.27064 NM_027920 ENSMUSG00000025702 March8 1300017E09Rik|MARCH-VIII|Mir membrane-associated ring finger (C3HC4) 8 protein-coding 0.000000 0.383085 -58(GATGACTAATGCATA,+,0.00),-58(GATGACTAATGCATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2449 chr3 134473729 134473929 + -1.52219 NA Intergenic Intergenic -50194 NR_040600 75208 Mm.84580 NR_040600 ENSMUSG00000105765 4930539C22Rik - RIKEN cDNA 4930539C22 gene ncRNA 0.000000 0.253731 -80(CTATTACTATGCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3597 chr9 86859112 86859312 + -1.52219 NA intron (NM_013669, intron 2 of 29) intron (NM_013669, intron 2 of 29) 21237 NM_001277983 20616 Mm.281651 NM_013669 ENSMUSG00000033419 Snap91 91kDa|AP180|F1-20|mKIAA0656 synaptosomal-associated protein 91 protein-coding 0.000000 0.432836 5(TCTTTCTGCTGCTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-775 chr12 41857609 41857809 + -1.52219 NA intron (NM_053122, intron 6 of 6) intron (NM_053122, intron 6 of 6) -371652 NM_010733 16981 Mm.404786 NM_010733 ENSMUSG00000036295 Lrrn3 NLRR-3 leucine rich repeat protein 3, neuronal protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-49 chr1 33625993 33626193 + -1.52219 NA intron (NM_008922, intron 7 of 13) intron (NM_008922, intron 7 of 13) 43701 NM_008922 19076 Mm.27705 NM_008922 ENSMUSG00000026134 Prim2 AI323589 DNA primase, p58 subunit protein-coding 0.020000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2194 chr2 169169386 169169586 + -1.52219 NA Intergenic Intergenic 191217 NR_040326 75508 Mm.271256 NR_040326 ENSMUSG00000086348 1700017J07Rik - RIKEN cDNA 1700017J07 gene ncRNA 0.015000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3356 chr8 60209217 60209417 + -1.52219 NA Intergenic Intergenic -296807 NM_011834 23923 Mm.35020 NM_011834 ENSMUSG00000057228 Aadat AI875679|Aadt|KATII|Kat2|Kyat2|mKat-2 aminoadipate aminotransferase protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3262 chr8 3327989 3328189 + -1.52219 NA Intergenic MTD|LTR|ERVL-MaLR -25348 NM_001370668 102098 Mm.170461 NM_133962 ENSMUSG00000004568 Arhgef18 A430078G23Rik|AI467246|D030053O22Rik rho/rac guanine nucleotide exchange factor (GEF) 18 protein-coding 0.005000 0.502488 -86(CATGCCTATGCAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1989 chr2 44707491 44707691 + -1.52219 NA intron (NM_001362986, intron 5 of 10) intron (NM_001362986, intron 5 of 10) 154031 NM_172662 227835 Mm.314312 NM_172662 ENSMUSG00000036890 Gtdc1 E330008O22Rik glycosyltransferase-like domain containing 1 protein-coding 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2884 chr5 125486005 125486205 + -1.52219 NA intron (NM_030210, intron 3 of 17) L2a|LINE|L2 10232 NM_030210 78894 Mm.431573 NM_030210 ENSMUSG00000029482 Aacs 2210408B16Rik|SUR5 acetoacetyl-CoA synthetase protein-coding 0.005000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2376 chr3 107707376 107707576 + -1.52219 NA Intergenic Intergenic -10916 NM_145542 229709 Mm.220328 NM_145542 ENSMUSG00000027893 Ahcyl1 1110034F20Rik|AA409031|AA414901|Ahcy-rs3|DCAL|Irbit S-adenosylhomocysteine hydrolase-like 1 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-789 chr12 49563725 49563925 + -1.52219 NA Intergenic Intergenic -82963 NR_045472 69054 Mm.417838 NR_045472 ENSMUSG00000100844 1810007C17Rik - RIKEN cDNA 1810007C17 gene ncRNA 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3066 chr6 122317967 122318167 + -1.52219 NA TTS (NM_010749) TTS (NM_010749) 9347 NM_010749 17113 Mm.249225 NM_010749 ENSMUSG00000007458 M6pr CD-MPR|Mpr46 mannose-6-phosphate receptor, cation dependent protein-coding 0.005000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2742 chr5 19970259 19970459 + -1.52219 NA intron (NM_015823, intron 1 of 21) intron (NM_015823, intron 1 of 21) 62841 NM_015823 50791 Mm.332231 NM_015823 ENSMUSG00000040003 Magi2 AIP-1|Acvri1|Acvrinp1|Acvrip1|Magi-2|S-SCAM|mKIAA0705 membrane associated guanylate kinase, WW and PDZ domain containing 2 protein-coding 0.010000 0.353234 36(CATGACTTATTTATG,+,0.00),36(CATGACTTATTTATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1204 chr14 110390430 110390630 + -1.52219 NA Intergenic Intergenic 364619 NM_175499 239250 Mm.49728 NM_175499 ENSMUSG00000045871 Slitrk6 4832410J21Rik|Sltk6 SLIT and NTRK-like family, member 6 protein-coding 0.005000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2408 chr3 121363096 121363296 + -1.52219 NA TTS (NM_024178) TTS (NM_024178) -63345 NM_028044 71994 Mm.275555 NM_028044 ENSMUSG00000053931 Cnn3 1600014M03Rik|C85854|Calpo3 calponin 3, acidic protein-coding 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3432 chr8 109057501 109057701 + -1.52219 NA Intergenic Intergenic -17621 NR_126329 628686 Mm.203332 NR_126329 ENSMUSG00000097393 D030068K23Rik - RIKEN cDNA D030068K23 gene ncRNA 0.030000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1067 chr14 14659560 14659760 + -1.52219 NA Intergenic Intergenic -43365 NM_001360513 218756 Mm.258893 NM_001033270 ENSMUSG00000021733 Slc4a7 E430014N10Rik|NBC3|NBCn1|NBCn1-G|Tg(Thy1-SNCA)12Mjff solute carrier family 4, sodium bicarbonate cotransporter, member 7 protein-coding 0.005000 0.388060 -52(CTTTACAAGAAAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1880 chr19 35327105 35327305 + -1.52219 NA Intergenic L1M2|LINE|L1 361809 NR_035473 100316775 NR_035473 ENSMUSG00000089151 Mir1950 mmu-mir-1950 microRNA 1950 ncRNA 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1368 chr15 84949573 84949773 + -1.52219 NA exon (NM_001368660, exon 8 of 9) exon (NM_001368660, exon 8 of 9) 1950 NR_037206 100526461 NR_037206 ENSMUSG00000080441 Mir1249 mir-1249|mmu-mir-1249 microRNA 1249 ncRNA 0.030000 0.592040 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2778 chr5 50779828 50780028 + -1.52219 NA Intergenic Intergenic 527166 NR_106197 102465903 NR_106197 ENSMUSG00000099124 Mir8117 Gm27323|mmu-mir-8117 microRNA 8117 ncRNA 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-264 chr1 158031201 158031401 + -1.52219 NA Intergenic Intergenic 324959 NM_207583 240843 Mm.329579 NM_207583 ENSMUSG00000004031 Brinp2 6430517E21Rik|BB361039|Fam5b|mKIAA1747 bone morphogenic protein/retinoic acid inducible neural-specific 2 protein-coding 0.030000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2190 chr2 167640393 167640593 + -1.52219 NA Intergenic B3|SINE|B2 -8488 NM_001311131 66589 Mm.278783 NM_023230 ENSMUSG00000078923 Ube2v1 0610011J09Rik|AI256840|CROC-1|CROC1|D7Bwg1382e|UEV-1 ubiquitin-conjugating enzyme E2 variant 1 protein-coding 0.005000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1503 chr16 66182545 66182745 + -1.52478 NA Intergenic Intergenic 367456 NM_001368760 73569 Mm.25670 NM_028572 ENSMUSG00000091243 Vgll3 1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2 vestigial like family member 3 protein-coding 0.005000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1177 chr14 90402397 90402597 + -1.52478 NA Intergenic Intergenic 275606 NR_045712 74967 Mm.390704 NR_045712 ENSMUSG00000115001 4930474H20Rik - RIKEN cDNA 4930474H20 gene ncRNA 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3723 chrX 88463081 88463281 + -1.52478 NA Intergenic MLTR25A|LTR|ERVK 296372 NR_035440 100316809 NR_035440 ENSMUSG00000084535 Mir1906-1 Mir1906|Mirn1906|mmu-mir-1906|mmu-mir-1906-1 microRNA 1906-1 ncRNA 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3534 chr9 48077950 48078150 + -1.52478 NA Intergenic Intergenic -259842 NR_046048 100038460 Mm.447649 NR_046048 Gm10677 - predicted gene 10677 ncRNA 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1986 chr2 42347023 42347223 + -1.52478 NA intron (NM_053011, intron 1 of 90) ORR1A4|LTR|ERVL-MaLR 100445 NR_105754 102465171 NR_105754 ENSMUSG00000098660 Mir6336 Gm27584|mmu-mir-6336 microRNA 6336 ncRNA 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-681 chr11 94933776 94933976 + -1.52478 NA Intergenic Intergenic -2348 NM_007742 12842 Mm.277735 NM_007742 ENSMUSG00000001506 Col1a1 Col1a-1|Cola-1|Cola1|Mov-13|Mov13 collagen, type I, alpha 1 protein-coding 0.020000 0.567164 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2201 chr2 178815234 178815434 + -1.52844 NA Intergenic Intergenic 384819 NM_001291189 381409 Mm.330860 NM_198656 ENSMUSG00000039155 Cdh26 Gm1010 cadherin-like 26 protein-coding 0.020000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3111 chr7 49861156 49861356 + -1.53023 NA Intergenic Intergenic -49043 NM_001146013 104245 Mm.207053 NM_148931 ENSMUSG00000039728 Slc6a5 Glyt2|prestin solute carrier family 6 (neurotransmitter transporter, glycine), member 5 protein-coding 0.015000 0.318408 -89(AATACATTTTTCATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1010 chr13 94687401 94687601 + -1.53023 NA Intergenic Intergenic -101419 NM_009321 21371 Mm.379025 NM_009321 ENSMUSG00000042043 Tbca Tbca13 tubulin cofactor A protein-coding 0.010000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3084 chr6 141537438 141537638 + -1.53023 NA intron (NR_149743, intron 3 of 14) intron (NR_149743, intron 3 of 14) 13184 NM_021471 58807 Mm.284495 NM_021471 ENSMUSG00000030235 Slco1c1 OATP-14|OATP-F|Oatp2|Oatpf|Slc21a14 solute carrier organic anion transporter family, member 1c1 protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1077 chr14 21136947 21137147 + -1.53023 NA intron (NM_134079, intron 3 of 10) intron (NM_134079, intron 3 of 10) 60895 NM_001243041 11534 Mm.188734 NM_134079 ENSMUSG00000039197 Adk 2310026J05Rik|5033405D03Rik|AI255373|AI987814|Ak adenosine kinase protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-493 chr10 100996190 100996390 + -1.53023 NA Intergenic Intergenic -254655 NR_152765 102639396 Mm.404529 NR_152765 Gm35722 - predicted gene, 35722 ncRNA 0.005000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1790 chr18 67180472 67180672 + -1.53023 NA intron (NM_177137, intron 4 of 11) intron (NM_177137, intron 4 of 11) -24787 NM_024190 67064 Mm.73777 NM_024190 ENSMUSG00000109901 Chmp1b 2810405I11Rik|Chmp1b1 charged multivesicular body protein 1B protein-coding 0.010000 0.378109 -65(CTTTTATTATGCAGAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-874 chr12 118583510 118583710 + -1.53023 NA Intergenic Intergenic -53417 NR_045947 100384890 Mm.484658 NR_045947 ENSMUSG00000113875 D230030E09Rik Npe Riken cDNA D230030E09 gene ncRNA 0.030000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2747 chr5 27394305 27394505 + -1.53023 NA intron (NM_010075, intron 2 of 25) intron (NM_010075, intron 2 of 25) 106987 NM_028561 73526 Mm.389608 NM_028561 ENSMUSG00000048703 Speer4b 1700081O22Rik|SPEER-4B spermatogenesis associated glutamate (E)-rich protein 4B protein-coding 0.005000 0.378109 13(AATTAATATGCATC,+,0.00),13(AATTAATATGCATC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1592 chr17 31928059 31928259 + -1.53023 NA Intergenic L1MD|LINE|L1 -72355 NM_010831 17691 Mm.290941 NM_010831 ENSMUSG00000024042 Sik1 Hrt-20|Msk|Sik|Sik-1|Snf1lk salt inducible kinase 1 protein-coding 0.015000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2247 chr3 40391708 40391908 + -1.53023 NA Intergenic Intergenic 131104 NR_040445 100040882 Mm.272869 NR_040445 ENSMUSG00000037884 1700017G19Rik - RIKEN cDNA 1700017G19 gene ncRNA 0.015000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2483 chr3 148806081 148806281 + -1.53023 NA Intergenic Intergenic 148454 NM_001081298 99633 Mm.9776 NM_001081298 ENSMUSG00000028184 Adgrl2 AI450192|CIRL-2|Gm619|Lec1|Lphh1|Lphn2|mKIAA0786 adhesion G protein-coupled receptor L2 protein-coding 0.025000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2403 chr3 119733650 119733850 + -1.53023 NA intron (NM_001310711, intron 8 of 13) intron (NM_001310711, intron 8 of 13) 49638 NM_001310711 56195 Mm.29966 NM_019550 ENSMUSG00000028134 Ptbp2 Ptb2|brPTB|nPTB polypyrimidine tract binding protein 2 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1111 chr14 47981292 47981492 + -1.53023 NA Intergenic Intergenic 82528 NR_045959 73961 Mm.390702 NR_045959 ENSMUSG00000115609 4930447J18Rik 4930425M13Rik RIKEN cDNA 4930447J18 gene ncRNA 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2279 chr3 60253833 60254033 + -1.53023 NA Intergenic Lx5|LINE|L1 172064 NM_032400 84112 Mm.125110 NM_032400 ENSMUSG00000027762 Sucnr1 Gpr91 succinate receptor 1 protein-coding 0.010000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-55 chr1 36986709 36986909 + -1.53188 NA Intergenic B3|SINE|B2 -42504 NM_001370829 70853 Mm.148848 NM_027580 ENSMUSG00000050122 Vwa3b 4921511C04Rik|A230074B11Rik|Gm555 von Willebrand factor A domain containing 3B protein-coding 0.005000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1524 chr16 78060639 78060839 + -1.53188 NA Intergenic Intergenic 194715 NR_045698 100503619 Mm.387531 NR_045698 ENSMUSG00000109841 E330011O21Rik - RIKEN cDNA E330011O21 gene ncRNA 0.020000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2459 chr3 137482900 137483100 + -1.53463 NA Intergenic Intergenic 69662 NM_177665 229862 Mm.246591 NM_177665 Gm4861 9230109N16|EG229862 predicted gene 4861 protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3005 chr6 78907677 78907877 + -1.53463 NA Intergenic Intergenic -124265 NR_040301 100504701 Mm.400420 NR_040301 ENSMUSG00000108072 Gm20362 - predicted gene, 20362 ncRNA 0.000000 0.328358 -70(TTTAAAATGACAAAGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3307 chr8 31891287 31891487 + -1.53463 NA intron (NM_001364429, intron 2 of 7) intron (NM_001364429, intron 2 of 7) 27456 NM_001364427 211323 Mm.153432 NM_178591 ENSMUSG00000062991 Nrg1 6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF neuregulin 1 protein-coding 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-824 chr12 71740782 71740982 + -1.53741 NA Intergenic Intergenic -90186 NM_026102 208846 Mm.87417 NM_026102 ENSMUSG00000034574 Daam1 - dishevelled associated activator of morphogenesis 1 protein-coding 0.000000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3338 chr8 46048933 46049133 + -1.53741 NA intron (NM_207213, intron 10 of 17) intron (NM_207213, intron 10 of 17) 38431 NM_026278 67620 Mm.383914 NM_026278 ENSMUSG00000031637 Lrp2bp 1700113N17Rik|2310006J04Rik|4930479L12Rik|MegBP Lrp2 binding protein protein-coding 0.005000 0.303483 10(AATAACAAGAGAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3083 chr6 141399649 141399849 + -1.53741 NA intron (NM_018779, intron 1 of 15) intron (NM_018779, intron 1 of 15) 59196 NR_033555 100093700 Mm.483778 NR_033555 ENSMUSG00000107456 Gm10400 - predicted gene 10400 ncRNA 0.005000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3524 chr9 40939327 40939527 + -1.53741 NA intron (NM_001081121, intron 3 of 8) L1MC5a|LINE|L1 23607 NM_001357360 70989 Mm.335087 NM_001081121 ENSMUSG00000032023 Jhy 4931429I11Rik|BB239335 junctional cadherin complex regulator protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3216 chr7 117709335 117709535 + -1.53741 NA Intergenic Intergenic 328456 NM_175645 233781 Mm.461427 NM_175645 ENSMUSG00000030657 Xylt1 8030490L12 xylosyltransferase 1 protein-coding 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-400 chr10 40067102 40067302 + -1.53741 NA intron (NM_001114332, intron 3 of 5) intron (NM_001114332, intron 3 of 5) -41934 NM_144821 215929 Mm.55513 NM_144821 ENSMUSG00000038522 Mfsd4b1 AI317395|AI482555|Naglt1a major facilitator superfamily domain containing 4B1 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2740 chr5 19214835 19215035 + -1.53741 NA intron (NR_102341, intron 1 of 3) intron (NR_102341, intron 1 of 3) 11620 NR_102341 70832 Mm.398993 NR_102341 ENSMUSG00000097626 4921504A21Rik - RIKEN cDNA 4921504A21 gene ncRNA 0.005000 0.318408 42(ATTTGCAAAACACAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3013 chr6 82613298 82613498 + -1.53741 NA Intergenic ORR1C2-int|LTR|ERVL-MaLR 39467 NM_025882 66979 Mm.195753 NM_025882 ENSMUSG00000030042 Pole4 2400007P05Rik|5830430F06Rik polymerase (DNA-directed), epsilon 4 (p12 subunit) protein-coding 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3565 chr9 69167107 69167307 + -1.53741 NA intron (NM_013646, intron 1 of 10) intron (NM_013646, intron 1 of 10) -122634 NM_001289916 19883 Mm.378450 NM_013646 ENSMUSG00000032238 Rora 9530021D13Rik|Nr1f1|ROR1|ROR2|ROR3|nmf267|sg|staggerer|tmgc26 RAR-related orphan receptor alpha protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3759 chrX 147417451 147417651 + -1.53741 NA intron (NM_008356, intron 1 of 13) intron (NM_008356, intron 1 of 13) 11641 NM_008356 16165 Mm.368330 NM_008356 ENSMUSG00000031289 Il13ra2 CD213a2|IL-13R-alpha-2 interleukin 13 receptor, alpha 2 protein-coding 0.010000 0.393035 -58(ATTTACACAAAAATTG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3284 chr8 18417931 18418131 + -1.53741 NA Intergenic MTEa|LTR|ERVL-MaLR -177100 NM_173189 244329 Mm.235296 NM_173189 ENSMUSG00000039842 Mcph1 5430437K10Rik|BRIT1|D030046N04Rik|MCT|Tg(HLA-A2.1)1Enge microcephaly, primary autosomal recessive 1 protein-coding 0.005000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1956 chr2 20196074 20196274 + -1.53838 NA Intergenic Intergenic -93739 NM_001081006 208618 Mm.237935 NM_029895 ENSMUSG00000036617 Etl4 6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt enhancer trap locus 4 protein-coding 0.000000 0.273632 78(CCATTTTATTGAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-256 chr1 150410184 150410384 + -1.53838 NA intron (NM_133780, intron 13 of 51) intron (NM_133780, intron 13 of 51) -17204 NM_001357579 226499 Mm.222093 NM_145511 ENSMUSG00000006010 Odr4 1810053E15Rik|odr-4 odr4 GPCR localization factor homolog protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1058 chr14 9285141 9285341 + -1.53838 NA Intergenic RMER1A|Other|Other -598854 NR_030680 100042415 Mm.235938 NR_030680 ENSMUSG00000089686 Mnd1-ps Gm3833 Mnd1 retrotransposed pseudogene pseudo 0.005000 0.542289 -76(CCTGTGTCATGGAGAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-159 chr14 9285132 9285332 + -1.53838 NA Intergenic RMER1A|Other|Other -598863 NR_030680 100042415 Mm.235938 NR_030680 ENSMUSG00000089686 Mnd1-ps Gm3833 Mnd1 retrotransposed pseudogene pseudo 0.005000 0.537313 -67(CCTGTGTCATGGAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1374 chr15 90272625 90272825 + -1.53838 NA Intergenic Intergenic 48365 NR_106106 102466838 NR_106106 ENSMUSG00000099319 Mir7648 Gm27736|mmu-mir-7648 microRNA 7648 ncRNA 0.020000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2060 chr2 95839652 95839852 + -1.54038 NA Intergenic Intergenic -478417 NM_001289742 241568 Mm.241682 NM_178725 ENSMUSG00000050587 Lrrc4c 6430556C10Rik|NGL-1 leucine rich repeat containing 4C protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1738 chr18 39911028 39911228 + -1.54038 NA Intergenic Intergenic 137631 NM_011033 18459 Mm.9493 NM_011033 ENSMUSG00000051732 Pabpc2 Pabp|Pabp+|Pabp2 poly(A) binding protein, cytoplasmic 2 protein-coding 0.005000 0.497512 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-380 chr3 124434502 124434702 + -1.54231 NA Intergenic Intergenic -8563 NM_001357195 71824 Mm.331353 NM_027939 ENSMUSG00000027973 1700006A11Rik - RIKEN cDNA 1700006A11 gene protein-coding 0.000000 0.333333 -20(ATTTGCATTAGTATTA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2898 chr5 137966628 137966828 + -1.54391 NA Intergenic Intergenic -3630 NR_151611 118446 Mm.332771 NM_080450 ENSMUSG00000056966 Gjc3 Cx29|Gje1 gap junction protein, gamma 3 protein-coding 0.000000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2806 chr5 72732135 72732335 + -1.54391 NA intron (NM_013698, intron 3 of 13) intron (NM_013698, intron 3 of 13) 4367 NM_013698 22165 Mm.3264 NM_013698 ENSMUSG00000054892 Txk A130089B16Rik|Btkl|PTK-RL-18|PTK4|Rlk TXK tyrosine kinase protein-coding 0.015000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-235 chr1 137853449 137853649 + -1.54391 NA Intergenic B3|SINE|B2 -112906 NR_029795 735252 NR_029795 ENSMUSG00000065565 Mir181a-1 Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213 microRNA 181a-1 ncRNA 0.020000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1230 chr14 122796976 122797176 + -1.54391 NA intron (NR_153443, intron 21 of 24) intron (NR_153443, intron 21 of 24) -115954 NR_155286 105245866 Mm.390754 NM_001039531 ENSMUSG00000075463 4930594M22Rik F930011C10Rik|Gm15735 RIKEN cDNA 4930594M22 gene ncRNA 0.015000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-440 chr10 67946875 67947075 + -1.54391 NA Intergenic Intergenic 26733 NR_152797 75067 Mm.416933 NR_152797 ENSMUSG00000112899 4930521O17Rik - RIKEN cDNA 4930521O17 gene ncRNA 0.025000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2707 chr4 151389668 151389868 + -1.54391 NA intron (NM_001081557, intron 5 of 23) intron (NM_001081557, intron 5 of 23) 300198 NM_001308446 105704528 Mm.415128 NM_001308446 ENSMUSG00000078491 Gm13090 - predicted gene 13090 protein-coding 0.020000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3453 chr8 119925600 119925800 + -1.54391 NA intron (NM_009462, intron 1 of 13) intron (NM_009462, intron 1 of 13) 15340 NM_001310630 22224 Mm.256910 NM_009462 ENSMUSG00000031826 Usp10 2610014N07Rik|UBPO|Uchrp|mKIAA0190 ubiquitin specific peptidase 10 protein-coding 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3303 chr8 27975530 27975730 + -1.54436 NA Intergenic Intergenic 109223 NR_033590 666422 Mm.484413 NR_033590 ENSMUSG00000110372 Gm8096 EG666422 3-phosphoglycerate dehydrogenase pseudogene pseudo 0.000000 0.303483 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2360 chr3 99536884 99537084 + -1.54436 NA Intergenic Intergenic 283224 NM_009323 21384 Mm.88761 NM_009323 ENSMUSG00000027868 Tbx15 Tbx14|Tbx8|de T-box 15 protein-coding 0.010000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2826 chr5 86435819 86436019 + -1.54436 NA intron (NM_001033233, intron 3 of 8) intron (NM_001033233, intron 3 of 8) 33071 NM_001033233 194597 Mm.249106 NM_001033233 ENSMUSG00000072845 Tmprss11a Gm7 transmembrane protease, serine 11a protein-coding 0.010000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2275 chr3 57678063 57678263 + -1.54521 NA intron (NM_001033349, intron 2 of 3) RMER1B|Other|Other 14374 NM_001033349 242037 Mm.291091 NM_001033349 ENSMUSG00000074591 Ankub1 Gm410 ankrin repeat and ubiquitin domain containing 1 protein-coding 0.000000 0.492537 19(ATCTCCATGACATAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3568 chr9 75486640 75486840 + -1.54985 NA Intergenic MLT1A|LTR|ERVL-MaLR 45216 NM_001039522 235497 Mm.41508 NM_001006122 ENSMUSG00000042487 Leo1 Gm185 Leo1, Paf1/RNA polymerase II complex component protein-coding 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1750 chr18 45799529 45799729 + -1.54985 NA intron (NR_040342, intron 3 of 3) intron (NR_040342, intron 3 of 3) 239475 NM_080465 140492 Mm.411614 NM_080465 ENSMUSG00000054477 Kcnn2 KCa2.2|SK2|SKCA2|bc|fri potassium intermediate/small conductance calcium-activated channel, subfamily N, member 2 protein-coding 0.010000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1394 chr15 98056717 98056917 + -1.54985 NA intron (NM_144851, intron 13 of 17) intron (NM_144851, intron 13 of 17) -35772 NM_001163488 18642 Mm.272582 NM_021514 ENSMUSG00000033065 Pfkm AI131669|ATP-PFK|PFK-A|PFK-M|Pfk-4|Pfk4|Pfka|Pfkx phosphofructokinase, muscle protein-coding 0.015000 0.437811 -17(ATTTGCATACAAAGGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-738 chr12 15603473 15603673 + -1.54985 NA Intergenic Intergenic 197528 NR_105809 102465204 NR_105809 ENSMUSG00000098480 Mir6387 Gm27281|mmu-mir-6387 microRNA 6387 ncRNA 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3113 chr7 51539352 51539552 + -1.54990 NA intron (NR_073508, intron 5 of 20) L1M1|LINE|L1 28423 NR_073508 233246 Mm.254431 NM_177694 ENSMUSG00000055489 Ano5 9330162L24|Gdd1|Tmem16e anoctamin 5 protein-coding 0.000000 0.407960 -27(TTATTTTCATGCACAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-312 chr2 45693706 45693906 + -1.54990 NA Intergenic Intergenic -2799 NR_040497 69405 Mm.396184 NR_040497 ENSMUSG00000086202 1700019E08Rik - RIKEN cDNA 1700019E08 gene ncRNA 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-747 chr12 24890644 24890844 + -1.55079 NA intron (NM_001083341, intron 3 of 11) MTC|LTR|ERVL-MaLR 59145 NM_026037 67216 Mm.167671 NM_026037 ENSMUSG00000020646 Mboat2 2810049G06Rik|AU022889|AW547221|LPCAT4|Moact2|Oact2 membrane bound O-acyltransferase domain containing 2 protein-coding 0.010000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2095 chr2 111753104 111753304 + -1.55531 NA Intergenic Intergenic -1047 NM_146887 258889 Mm.473590 NM_146887 ENSMUSG00000057149 Olfr1301 MOR248-5 olfactory receptor 1301 protein-coding 0.005000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2423 chr3 124434505 124434705 + -1.55794 NA Intergenic Intergenic -8566 NM_001357195 71824 Mm.331353 NM_027939 ENSMUSG00000027973 1700006A11Rik - RIKEN cDNA 1700006A11 gene protein-coding 0.000000 0.333333 -23(ATTTGCATTAGTATTA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-536 chr8 103994979 103995179 + -1.55901 NA Intergenic B4A|SINE|B4 -106546 NM_009868 12562 Mm.21767 NM_009868 ENSMUSG00000031871 Cdh5 7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec cadherin 5 protein-coding 0.010000 0.502488 81(GCATGCTCTTTCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2823 chr5 85004454 85004654 + -1.55987 NA Intergenic Lx5|LINE|L1 -587172 NM_007937 13839 Mm.137991 NM_007937 ENSMUSG00000029245 Epha5 AI854630|AW125296|Cek7|Ehk1|Els1|Hek7|Rek7|bsk Eph receptor A5 protein-coding 0.000000 0.452736 -15(CTTTCCATCACAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1285 chr15 30693842 30694042 + -1.56036 NA intron (NM_008729, intron 9 of 22) intron (NM_008729, intron 9 of 22) -345184 NR_045186 73784 Mm.66947 NR_045186 ENSMUSG00000115474 4930430F21Rik - RIKEN cDNA 4930430F21 gene ncRNA 0.015000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1809 chr18 78896159 78896359 + -1.56036 NA intron (NM_053099, intron 3 of 5) intron (NM_053099, intron 3 of 5) 213132 NM_053099 240427 Mm.312871 NM_053099 ENSMUSG00000024548 Setbp1 C130092E12|Seb|mKIAA0437 SET binding protein 1 protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1547 chr16 87924138 87924338 + -1.56036 NA intron (NM_146072, intron 13 of 16) intron (NM_146072, intron 13 of 16) 14967 NR_155304 105246151 Mm.449986 NR_155304 4930590A17Rik - RIKEN cDNA 4930590A17 gene ncRNA 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3362 chr8 65677689 65677889 + -1.56036 NA intron (NM_175188, intron 1 of 7) intron (NM_175188, intron 1 of 7) 59264 NM_175188 72925 Mm.380457 NM_175188 ENSMUSG00000036469 March1 2900024D24Rik|BB085186 membrane-associated ring finger (C3HC4) 1 protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-903 chr13 16223213 16223413 + -1.56036 NA Intergenic L2c|LINE|L2 -199890 NR_155430 100503142 Mm.359204 NR_155430 B230303A05Rik B230303A05|EG328191 U1 small nuclear ribonucleoprotein 1C pseudogene pseudo 0.000000 0.407960 -47(ACTTTGTCTTGCAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1456 chr16 37670855 37671055 + -1.56180 NA Intergenic RLTR21|LTR|ERVK -16587 NM_026610 68194 Mm.379154 NM_026610 ENSMUSG00000022820 Ndufb4 0610006N12Rik|1300010H20Rik NADH:ubiquinone oxidoreductase subunit B4 protein-coding 0.005000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-31 chr1 24071204 24071404 + -1.56224 NA intron (NM_026604, intron 3 of 20) intron (NM_026604, intron 3 of 20) 29037 NM_026604 68187 Mm.87130 NM_026604 ENSMUSG00000026153 Fam135a 4921533L14Rik|AI256732|AI835491 family with sequence similarity 135, member A protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3641 chr9 109630550 109630750 + -1.56423 NA Intergenic Intergenic -4591 NM_001013776 382106 Mm.441401 NM_001013776 ENSMUSG00000062275 Fbxw24 EG382106|Gm5162 F-box and WD-40 domain protein 24 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1772 chr18 55536563 55536763 + -1.56423 NA Intergenic Intergenic -544072 NM_001360787 269023 Mm.192984 NM_175751 ENSMUSG00000052713 Zfp608 4932417D18Rik|D430007A19Rik|Znf608 zinc finger protein 608 protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3688 chrX 38344250 38344450 + -1.56507 NA Intergenic Intergenic 28228 NM_001290389 67821 Mm.60134 NM_133690 ENSMUSG00000016327 Atp1b4 1110020B02Rik ATPase, (Na+)/K+ transporting, beta 4 polypeptide protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2542 chr4 31804788 31804988 + -1.56507 NA Intergenic L1MA9|LINE|L1 -159219 NM_009316 26409 Mm.258589 NM_009316 ENSMUSG00000028284 Map3k7 B430101B05|C87327|Tak1 mitogen-activated protein kinase kinase kinase 7 protein-coding 0.000000 0.398010 -26(TTATTTTTATGTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3478 chr9 8494462 8494662 + -1.56507 NA Intergenic Intergenic -49580 NM_001282086 22068 Mm.325086 NM_013838 ENSMUSG00000031997 Trpc6 AV025995|LLHWJM002|LLHWJM003|LLHWJM004|TRP-6|Trrp6|mtrp6 transient receptor potential cation channel, subfamily C, member 6 protein-coding 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1804 chr18 76069988 76070188 + -1.56507 NA intron (NM_001357506, intron 1 of 2) intron (NM_001357506, intron 1 of 2) 10762 NM_001357506 207259 Mm.159332 NM_145356 ENSMUSG00000044646 Zbtb7c B230208J24Rik|Kr-pok|Zbtb36 zinc finger and BTB domain containing 7C protein-coding 0.005000 0.487562 26(TTTTTCTCTTTTTAAC,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-4 chr1 24071128 24071328 + -1.56574 NA intron (NM_026604, intron 3 of 20) intron (NM_026604, intron 3 of 20) 29113 NM_026604 68187 Mm.87130 NM_026604 ENSMUSG00000026153 Fam135a 4921533L14Rik|AI256732|AI835491 family with sequence similarity 135, member A protein-coding 0.010000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3213 chr7 116457114 116457314 + -1.56947 NA Intergenic L4_A_Mam|LINE|RTE-X -13756 NM_011083 18704 Mm.3810 NM_011083 ENSMUSG00000030660 Pik3c2a Cpk-m|PI3KC2 phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha protein-coding 0.010000 0.442786 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-34 chr1 176750671 176750871 + -1.57267 NA intron (NM_001099637, intron 13 of 19) intron (NM_001099637, intron 13 of 19) 21652 NR_029775 723921 NR_029775 ENSMUSG00000065573 Mir350 Mirn350|mir-350|mmu-mir-350 microRNA 350 ncRNA 0.000000 0.343284 -43(CTTTACATGGTAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-294 chr1 176750616 176750816 + -1.57267 NA intron (NM_001099637, intron 13 of 19) intron (NM_001099637, intron 13 of 19) 21707 NR_029775 723921 NR_029775 ENSMUSG00000065573 Mir350 Mirn350|mir-350|mmu-mir-350 microRNA 350 ncRNA 0.005000 0.348259 12(CTTTACATGGTAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1605 chr17 44308351 44308551 + -1.57361 NA Intergenic Intergenic 119879 NM_172621 224796 Mm.37666 NM_172621 ENSMUSG00000023959 Clic5 5730531E12Rik|B330005L24|Gm322|jbg|nmf318 chloride intracellular channel 5 protein-coding 0.010000 0.402985 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-387 chr3 147166730 147166930 + -1.57569 NA Intergenic Intergenic 314463 NM_001357217 70892 Mm.187793 NM_027594 ENSMUSG00000036745 Ttll7 1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7 tubulin tyrosine ligase-like family, member 7 protein-coding 0.015000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-438 chr10 64618710 64618910 + -1.57751 NA intron (NM_177612, intron 12 of 17) intron (NM_177612, intron 12 of 17) 501557 NR_152621 102632700 NR_152621 ENSMUSG00000100528 Gm28881 - predicted gene 28881 ncRNA 0.015000 0.432836 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-190 chr15 14299937 14300137 + -1.57916 NA Intergenic Intergenic -1126362 NM_007666 12563 Mm.57048 NM_007666 ENSMUSG00000039385 Cdh6 cad6 cadherin 6 protein-coding 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1175 chr14 88395177 88395377 + -1.58119 NA Intergenic Intergenic 76119 NM_178685 219257 Mm.128861 NM_178685 ENSMUSG00000050505 Pcdh20 C630015B17Rik|Pcdh13 protocadherin 20 protein-coding 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2062 chr2 97053143 97053343 + -1.58179 NA intron (NM_001363047, intron 3 of 8) intron (NM_001363047, intron 3 of 8) -414414 NM_001289744 241568 Mm.241682 NM_178725 ENSMUSG00000050587 Lrrc4c 6430556C10Rik|NGL-1 leucine rich repeat containing 4C protein-coding 0.005000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1223 chr14 118795625 118795825 + -1.58179 NA intron (NM_001160097, intron 1 of 3) intron (NM_001160097, intron 1 of 3) 7854 NM_001160096 58187 Mm.390755 NM_021386 ENSMUSG00000022132 Cldn10 6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e claudin 10 protein-coding 0.010000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1050 chr13 116854612 116854812 + -1.58179 NA 3' UTR (NM_001081009, exon 27 of 27) 3' UTR (NM_001081009, exon 27 of 27) -16534 NR_153406 74680 Mm.488118 NR_153406 ENSMUSG00000114290 4930435F18Rik - RIKEN cDNA 4930435F18 gene ncRNA 0.015000 0.462687 -1(CCTATGGCATTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-480 chr10 92578182 92578382 + -1.58179 NA Intergenic Intergenic 144136 NM_008682 17997 Mm.2998 NM_008682 ENSMUSG00000019988 Nedd1 - neural precursor cell expressed, developmentally down-regulated gene 1 protein-coding 0.005000 0.298507 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3718 chrX 84671441 84671641 + -1.58179 NA intron (NM_007868, intron 55 of 78) RLTR13B1|LTR|ERVK -376754 NM_001314034 13405 Mm.275608 NM_007868 ENSMUSG00000045103 Dmd DXSmh7|DXSmh9|Dp427|Dp71|dys|mdx|pke dystrophin, muscular dystrophy protein-coding 0.005000 0.343284 66(ATAAGCATAAGAAGGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2374 chr3 105227094 105227294 + -1.58179 NA Intergenic Intergenic 160350 NM_029228 75269 Mm.307994 NM_029228 ENSMUSG00000051788 4930564D02Rik - RIKEN cDNA 4930564D02 gene protein-coding 0.015000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1457 chr16 38132646 38132846 + -1.58179 NA intron (NM_001347232, intron 1 of 11) intron (NM_001347232, intron 1 of 11) -43486 NR_033221 414072 Mm.483602 NR_033221 BC031361 - cDNA sequence BC031361 ncRNA 0.000000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-701 chr11 106911379 106911579 + -1.58179 NA intron (NM_025481, intron 1 of 18) Lx7|LINE|L1 9236 NM_001362894 66313 Mm.340955 NM_025481 ENSMUSG00000018363 Smurf2 2810411E22Rik|AI558114|AI649275 SMAD specific E3 ubiquitin protein ligase 2 protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-124 chr1 71567896 71568096 + -1.58179 NA intron (NM_026195, intron 8 of 15) intron (NM_026195, intron 8 of 15) 10840 NM_026195 108147 Mm.38010 NM_026195 ENSMUSG00000026192 Atic 2610509C24Rik|AA536954|AW212393 5-aminoimidazole-4-carboxamide ribonucleotide formyltransferase/IMP cyclohydrolase protein-coding 0.025000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3697 chrX 52531476 52531676 + -1.58179 NA intron (NM_016697, intron 2 of 7) intron (NM_016697, intron 2 of 7) -44267 NR_045367 100504594 Mm.447008 NR_045367 ENSMUSG00000055110 A630012P03Rik - RIKEN cDNA A630012P03 gene ncRNA 0.005000 0.358209 -90(ATTTGCATGTCAACAC,-,0.00),51(TATTTATGATGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3586 chr9 82180783 82180983 + -1.58179 NA intron (NM_001357477, intron 4 of 4) intron (NM_001357477, intron 4 of 4) 317213 NM_001357477 75033 Mm.335329 NM_175213 ENSMUSG00000043289 Mei4 4930486G11Rik meiotic double-stranded break formation protein 4 protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-711 chr11 115580970 115581170 + -1.58179 NA exon (NM_001002929, exon 14 of 19) exon (NM_001002929, exon 14 of 19) 16626 NM_001002929 445007 Mm.4379 NM_001002929 ENSMUSG00000020739 Nup85 Pcnt1|frount nucleoporin 85 protein-coding 0.025000 0.552239 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2002 chr2 50696148 50696348 + -1.58179 NA Intergenic Intergenic -213436 NR_033595 227885 Mm.301654 NR_033595 ENSMUSG00000083270 Gm13498 - heat shock protein 90 alpha (cytosolic), class B member 1 pseudogene pseudo 0.005000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-536 chr10 125139072 125139272 + -1.58179 NA Intergenic Intergenic 169644 NM_001358915 20503 Mm.29161 NM_011391 ENSMUSG00000020102 Slc16a7 4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2 solute carrier family 16 (monocarboxylic acid transporters), member 7 protein-coding 0.000000 0.417910 12(TGATAGTGATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2237 chr3 29296993 29297193 + -1.58179 NA intron (NR_151638, intron 4 of 13) Lx7|LINE|L1 -119730 NR_030422 791072 NR_030422 ENSMUSG00000076120 Mir551b Mirn551b|mir-551b microRNA 551b ncRNA 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2679 chr4 119621227 119621427 + -1.58179 NA intron (NM_172699, intron 9 of 12) intron (NM_172699, intron 9 of 12) -16405 NM_008190 14915 Mm.2614 NM_008190 ENSMUSG00000023247 Guca2a Guca2 guanylate cyclase activator 2a (guanylin) protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1947 chr2 11524323 11524523 + -1.58179 NA intron (NM_001177758, intron 1 of 14) intron (NM_001177758, intron 1 of 14) -22333 NM_001177753 170768 Mm.19669 NM_133232 ENSMUSG00000026773 Pfkfb3 E330010H22Rik|iPFK-2|uPFK-2 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase 3 protein-coding 0.030000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-84 chr1 54332973 54333173 + -1.58242 NA intron (NM_030025, intron 17 of 27) L1M2|LINE|L1 82390 NM_030025 78016 Mm.67455 NM_030025 ENSMUSG00000025983 Ccdc150 4930511H11Rik coiled-coil domain containing 150 protein-coding 0.015000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1933 chr2 5860448 5860648 + -1.58242 NA intron (NM_016918, intron 3 of 9) intron (NM_016918, intron 3 of 9) 2386 NR_152181 791411 Mm.442531 NR_152181 Gm13199 - predicted gene 13199 ncRNA 0.020000 0.467662 79(CTTTGTTCTTGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-345 chr10 15541958 15542158 + -1.58242 NA Intergenic Intergenic -249719 NR_131087 77538 Mm.128235 NR_131087 ENSMUSG00000112227 C330004P14Rik - RIKEN cDNA C330004P14 gene ncRNA 0.005000 0.388060 -75(ATCTGAATCAAAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2129 chr2 133876514 133876714 + -1.58242 NA Intergenic Intergenic 311906 NR_037273 100526500 NR_037273 ENSMUSG00000093338 Mir3090 mmu-mir-3090 microRNA 3090 ncRNA 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-758 chr12 32460358 32460558 + -1.58242 NA Intergenic Intergenic 81669 NM_001162903 72123 Mm.341352 NM_028111 ENSMUSG00000090946 Ccdc71l 2010109K11Rik|AV375874 coiled-coil domain containing 71 like protein-coding 0.005000 0.393035 4(AATGACTAATGCAAG,-,0.00) -33(GTTTTGTTTTGTTAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-761 chr12 33323332 33323532 + -1.58242 NA intron (NM_001033436, intron 1 of 7) intron (NM_001033436, intron 1 of 7) 20917 NM_001033436 380753 Mm.41540 NM_028139 ENSMUSG00000020564 Atxn7l1 2810423G08Rik|Atxn7l4 ataxin 7-like 1 protein-coding 0.005000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-123 chr1 71437484 71437684 + -1.58242 NA Intergenic B3A|SINE|B2 -22674 NM_175210 74591 Mm.159251 NM_175210 ENSMUSG00000050296 Abca12 4832428G11Rik|4833417A11Rik ATP-binding cassette, sub-family A (ABC1), member 12 protein-coding 0.015000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1441 chr16 26096609 26096809 + -1.58242 NA intron (NM_173379, intron 1 of 14) intron (NM_173379, intron 1 of 14) 9104 NM_173379 210530 Mm.326869 NM_173379 ENSMUSG00000038168 P3h2 4832416N06|AW553532|Leprel1|Mlat4 prolyl 3-hydroxylase 2 protein-coding 0.005000 0.412935 -16(ATTTGCATCACTAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-851 chr12 96459002 96459202 + -1.58242 NA Intergenic Intergenic -411880 NR_103800 69423 Mm.46121 NM_027076 1700019M22Rik - NFX-like protein pseudo 0.010000 0.273632 19(TTTCTATAATGTAAAT,+,0.00),69(CTTTTTTGATTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1635 chr17 69839458 69839658 + -1.58242 NA Intergenic Intergenic -129515 NM_001347411 224997 Mm.311840 NM_027712 ENSMUSG00000003279 Dlgap1 4933422O14Rik|9630002F18|AI845682|AI848168|BB075781|D17Bwg0511e|GKAP/SAPAP|GKPA/SAPAP|Gkap|Sapap1|mKIAA4162 DLG associated protein 1 protein-coding 0.000000 0.333333 -62(ATCTACATTAAAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2972 chr6 47992408 47992608 + -1.58242 NA Intergenic Intergenic 39118 NM_178898 101197 Mm.241063 NM_178898 ENSMUSG00000045466 Zfp956 AI894139 zinc finger protein 956 protein-coding 0.015000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1310 chr15 48990481 48990681 + -1.58242 NA Intergenic Intergenic -198592 NM_001081391 239420 Mm.309363 NM_001081391 ENSMUSG00000022311 Csmd3 4930500N14Rik|mKIAA1894 CUB and Sushi multiple domains 3 protein-coding 0.005000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3775 chrX 169667345 169667545 + -1.58242 NA Intergenic L1_Mus1|LINE|L1 -17754 NM_001290512 17318 Mm.34441 NM_010797 ENSMUSG00000035299 Mid1 61B3-R|DXHXS1141|Fxy|Trim18 midline 1 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3666 chr9 122437959 122438159 + -1.58242 NA Intergenic L1M5|LINE|L1 -39258 NR_045967 654800 Mm.393956 NR_045967 A730085K08Rik - RIKEN cDNA A730085K08 gene ncRNA 0.020000 0.388060 -60(ATTAGAAAGGAAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1982 chr2 38251904 38252104 + -1.58242 NA intron (NM_001362973, intron 1 of 22) intron (NM_001362973, intron 1 of 22) 35380 NM_001362977 227801 Mm.314245 NM_146122 ENSMUSG00000035392 Dennd1a 6030446I19Rik|connecdenn DENN/MADD domain containing 1A protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3258 chr7 139503935 139504135 + -1.58242 NA intron (NM_001355162, intron 4 of 15) intron (NM_001355162, intron 4 of 15) 78762 NR_027857 14912 Mm.28308 NM_183248 ENSMUSG00000041309 Nkx6-2 Gtx|Nkx6.2 NK6 homeobox 2 protein-coding 0.010000 0.502488 -10(CATGAATTCTGCATT,+,0.00),-10(CATGAATTCTGCATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-810 chr12 60921253 60921453 + -1.58242 NA Intergenic Intergenic 600467 NR_045049 100504101 Mm.235026 NR_045049 ENSMUSG00000113429 Gm20063 - predicted gene, 20063 ncRNA 0.015000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3585 chr9 82150447 82150647 + -1.58248 NA intron (NM_001357477, intron 4 of 4) Lx10|LINE|L1 286877 NM_001357477 75033 Mm.335329 NM_175213 ENSMUSG00000043289 Mei4 4930486G11Rik meiotic double-stranded break formation protein 4 protein-coding 0.000000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-325 chr10 5079715 5079915 + -1.58248 NA intron (NM_001079686, intron 37 of 54) intron (NM_001079686, intron 37 of 54) -10752 NM_022027 64009 Mm.331626 NM_022027 ENSMUSG00000096054 Syne1 8B|A330049M09Rik|BE692247|C130039F11Rik|CPG2|KASH1|Myne1|mKIAA1756|myne-1 spectrin repeat containing, nuclear envelope 1 protein-coding 0.000000 0.393035 -97(CATACAAATGCATA,+,0.00),-91(AATGCATATACATG,+,0.00),-91(AATGCATATACATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-933 chr13 32502580 32502780 + -1.58248 NA Intergenic tRNA-Ala-GCA|tRNA|tRNA -164136 NM_146041 218138 Mm.247143 NM_146041 ENSMUSG00000038372 Gmds BC031788|C87208 GDP-mannose 4, 6-dehydratase protein-coding 0.005000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-465 chr10 83934546 83934746 + -1.58248 NA Intergenic Intergenic 166051 NR_152790 102637349 Mm.402869 NR_152790 ENSMUSG00000111049 Gm34184 - predicted gene, 34184 ncRNA 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2601 chr4 69244287 69244487 + -1.58248 NA Intergenic Intergenic -289990 NM_019967 56710 Mm.248788 NM_019967 ENSMUSG00000028351 Brinp1 BRINP|Dbc1|Dbccr1|Fam5a bone morphogenic protein/retinoic acid inducible neural specific 1 protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2563 chr4 44808177 44808377 + -1.58248 NA intron (NM_138590, intron 2 of 8) intron (NM_138590, intron 2 of 8) 51718 NM_138590 319885 Mm.331576 NM_138590 ENSMUSG00000035649 Zcchc7 4930572I07Rik|D4Wsu132e zinc finger, CCHC domain containing 7 protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3560 chr9 67140586 67140786 + -1.58248 NA intron (NR_045748, intron 1 of 2) intron (NR_045748, intron 1 of 2) 7125 NR_045748 100502636 Mm.412607 NR_045748 ENSMUSG00000111556 Gm19299 - predicted gene, 19299 ncRNA 0.005000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1621 chr17 59760514 59760714 + -1.58248 NA Intergenic Intergenic -747292 NM_001368393 67993 Mm.36507 NM_026497 ENSMUSG00000024228 Nudt12 0610016O18Rik nudix (nucleoside diphosphate linked moiety X)-type motif 12 protein-coding 0.000000 0.373134 30(CTATGCATCAAAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-15 chr1 13416880 13417080 + -1.58248 NA Intergenic Intergenic -42897 NM_008678 17978 Mm.2537 NM_008678 ENSMUSG00000005886 Ncoa2 D1Ertd433e|GRIP-1|Grip1|KAT13C|NCoA-2|SRC-2|TIF2|bHLHe75 nuclear receptor coactivator 2 protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2835 chr5 89943225 89943425 + -1.58248 NA Intergenic Intergenic -59991 NM_001081401 330119 Mm.133062 NM_177872 ENSMUSG00000043635 Adamts3 1100001H14Rik|6330442E02Rik a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 3 protein-coding 0.005000 0.373134 -62(GATGAATAAGTCATA,+,0.00),-62(GATGAATAAGTCATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-390 chr10 34848848 34849048 + -1.58248 NA Intergenic ORR1F|LTR|ERVL-MaLR 365548 NM_010237 14302 Mm.332432 NM_010237 ENSMUSG00000019779 Frk BSK|BSK/IYK|C85044|GTK|RAK fyn-related kinase protein-coding 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-145 chr1 81474366 81474566 + -1.58248 NA Intergenic MIR|SINE|MIR 397059 NM_001356397 241134 Mm.313904 NM_172849 ENSMUSG00000054976 Nyap2 9430031J16Rik|Jr6|Kiaa1486 neuronal tyrosine-phophorylated phosphoinositide 3-kinase adaptor 2 protein-coding 0.000000 0.402985 -21(TATGAAGATGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-844 chr12 92928352 92928552 + -1.58248 NA Intergenic Intergenic 516371 NR_126436 75295 Mm.243878 NR_126436 ENSMUSG00000113164 4930559C10Rik - RIKEN cDNA 4930559C10 gene ncRNA 0.010000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3047 chr6 107626539 107626739 + -1.58248 NA Intergenic Intergenic 96913 NM_008516 16979 Mm.428543 NM_008516 ENSMUSG00000034648 Lrrn1 2810047E21Rik|NLRR-1 leucine rich repeat protein 1, neuronal protein-coding 0.000000 0.293532 36(TTTTACATGACAGAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1468 chr16 47888838 47889038 + -1.58248 NA Intergenic RMER1B|Other|Other 269561 NR_152166 619300 Mm.384092 NR_152166 6430553K19Rik - RIKEN cDNA 6430553K19 gene ncRNA 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-871 chr12 117375146 117375346 + -1.58394 NA Intergenic RLTR21|LTR|ERVK -38234 NR_044987 432713 Mm.459210 NR_044987 ENSMUSG00000101930 Gm5441 - predicted gene 5441 ncRNA 0.000000 0.273632 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3667 chr9 122558266 122558466 + -1.58394 NA Intergenic ORR1A2|LTR|ERVL-MaLR -14135 NR_015610 319626 Mm.186748 NR_015610 ENSMUSG00000097736 9530059O14Rik - RIKEN cDNA 9530059O14 gene ncRNA 0.005000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2550 chr4 34320818 34321018 + -1.58394 NA Intergenic Intergenic -229697 NM_001007589 433693 Mm.389532 NM_026019 ENSMUSG00000028291 Akirin2 2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2 akirin 2 protein-coding 0.015000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-474 chr10 86615018 86615218 + -1.58394 NA Intergenic Lx2A1|LINE|L1 -70409 NR_015572 66263 Mm.392261 NR_015572 ENSMUSG00000097412 1810014B01Rik - RIKEN cDNA 1810014B01 gene pseudo 0.005000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3616 chr9 94760905 94761105 + -1.58394 NA intron (NM_177909, intron 4 of 15) intron (NM_177909, intron 4 of 15) 9176 NR_106116 102465763 NR_106116 ENSMUSG00000098251 Mir7656 Gm27614|mmu-mir-7656 microRNA 7656 ncRNA 0.010000 0.383085 61(CATTTATATTCATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-626 chr11 56623234 56623434 + -1.58394 NA Intergenic Intergenic -388284 NM_008165 14799 Mm.4920 NM_008165 ENSMUSG00000020524 Gria1 2900051M01Rik|Glr-1|Glr1|GluA1|GluR-A|GluRA|Glur-1|Glur1|HIPA1|gluR-K1 glutamate receptor, ionotropic, AMPA1 (alpha 1) protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-906 chr13 17070712 17070912 + -1.58394 NA intron (NM_138654, intron 12 of 13) Lx8|LINE|L1 623953 NM_138654 192136 Mm.364180 NM_138654 ENSMUSG00000055137 Sugct 5033411D12Rik|D17907 succinyl-CoA glutarate-CoA transferase protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-621 chr11 53040139 53040339 + -1.58394 NA intron (NM_177059, intron 4 of 15) Lx9|LINE|L1 79817 NR_046047 790909 Mm.404626 NR_046047 ENSMUSG00000087668 Gm11186 - predicted gene 11186 ncRNA 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-879 chr13 4508238 4508438 + -1.58394 NA intron (NM_001311132, intron 5 of 8) AT_rich|Low_complexity|Low_complexity 15006 NM_001311132 116852 Mm.37605 NM_054080 ENSMUSG00000054757 Akr1c20 2610528B18Rik aldo-keto reductase family 1, member C20 protein-coding 0.005000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2920 chr6 8663034 8663234 + -1.58469 NA intron (NM_001252266, intron 7 of 11) intron (NM_001252266, intron 7 of 11) 95324 NM_001252266 15893 Mm.275683 NM_010492 ENSMUSG00000062995 Ica1 69kDa|ICA69 islet cell autoantigen 1 protein-coding 0.015000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-777 chr12 43132674 43132874 + -1.58545 NA Intergenic Intergenic -98557 NR_148724 102636207 NR_148724 Gm33340 Gm40882 predicted gene, 33340 ncRNA 0.005000 0.288557 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2220 chr3 16202937 16203137 + -1.58545 NA intron (NM_001358042, intron 2 of 3) Lx8|LINE|L1 19872 NM_001358042 229096 Mm.23834 NM_172677 ENSMUSG00000047213 Ythdf3 9130022A11Rik YTH N6-methyladenosine RNA binding protein 3 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1881 chr19 35953553 35953753 + -1.58545 NA Intergenic RLTR12A|LTR|ERVK -29075 NR_152130 329056 Mm.238105 NR_152130 ENSMUSG00000094707 A830019P07Rik - RIKEN cDNA A830019P07 gene ncRNA 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1557 chr16 93999132 93999332 + -1.58545 NA intron (NM_019500, intron 1 of 2) intron (NM_019500, intron 1 of 2) 9605 NM_019500 56173 Mm.328716 NM_019500 ENSMUSG00000047109 Cldn14 AI851731 claudin 14 protein-coding 0.025000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2902 chr5 142167674 142167874 + -1.58545 NA intron (NM_177879, intron 38 of 44) intron (NM_177879, intron 38 of 44) -233723 NM_199068 17425 Mm.24214 NM_010812 ENSMUSG00000056493 Foxk1 A630048H08Rik|AI463295|Gm10868|Mnf forkhead box K1 protein-coding 0.005000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2331 chr3 81750089 81750289 + -1.58545 NA Intergenic Intergenic -51836 NR_138586 320566 Mm.208417 NR_138586 ENSMUSG00000103695 A830029E22Rik - RIKEN cDNA A830029E22 gene ncRNA 0.005000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1558 chr16 94287940 94288140 + -1.58545 NA intron (NM_139145, intron 1 of 10) intron (NM_139145, intron 1 of 10) 2251 NM_001360045 110948 Mm.30921 NM_139145 ENSMUSG00000040820 Hlcs 410I21.SP6|D16Jhu34 holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase) protein-coding 0.020000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-275 chr1 163443947 163444147 + -1.58584 NA Intergenic Intergenic -40378 NM_001313738 98376 Mm.32901 NM_178883 ENSMUSG00000040124 Gorab NTKL-BP1|SCYL1-BP1|Scyl1bp1 golgin, RAB6-interacting protein-coding 0.010000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-268 chr1 159409534 159409734 + -1.58584 NA Intergenic Tigger7|DNA|TcMar-Tigger 69276 NR_039543 100628622 NR_039543 ENSMUSG00000105399 Mir1843b mir-1843b|mmu-mir-1843b microRNA 1843b ncRNA 0.005000 0.467662 66(CTATGAATGAAAAAGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-975 chr13 69592610 69592810 + -1.58584 NA intron (NM_175283, intron 3 of 4) B1_Mur1|SINE|Alu 18753 NM_175283 78925 Mm.451912 NM_175283 ENSMUSG00000021594 Srd5a1 0610031P22Rik|4930435F02Rik|S5AR 1|Srd5a-1 steroid 5 alpha-reductase 1 protein-coding 0.010000 0.547264 12(TTTTGAATGAAAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2510 chr4 7385158 7385358 + -1.58584 NA Intergenic Lx9|LINE|L1 -175430 NR_040645 71510 Mm.410775 NR_040645 ENSMUSG00000086070 8430436N08Rik - RIKEN cDNA 8430436N08 gene ncRNA 0.000000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-565 chr11 19372081 19372281 + -1.58584 NA Intergenic Intergenic 306906 NR_046037 74059 Mm.292321 NR_046037 ENSMUSG00000086025 4933406G16Rik - RIKEN cDNA 4933406G16 gene ncRNA 0.015000 0.412935 -5(ATTTACATGATCATAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2099 chr2 114962457 114962657 + -1.58584 NA Intergenic Intergenic -307593 NM_001356438 66632 Mm.117809 NM_025675 ENSMUSG00000057147 Dph6 5730421E18Rik|Atpbd4 diphthamine biosynthesis 6 protein-coding 0.000000 0.373134 -27(TGTTTTTTATGCTGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1980 chr2 37527792 37527992 + -1.58584 NA intron (NR_156419, intron 13 of 25) intron (NR_156419, intron 13 of 25) 11266 NM_177383 338346 Mm.445325 NM_177383 ENSMUSG00000053164 Gpr21 C230004C13Rik G protein-coupled receptor 21 protein-coding 0.000000 0.333333 47(CTTACATATTCATC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3316 chr8 36904863 36905063 + -1.58584 NA intron (NM_001194940, intron 2 of 17) intron (NM_001194940, intron 2 of 17) 47479 NM_001194940 50768 Mm.125155 NM_015802 ENSMUSG00000031523 Dlc1 A730069N07Rik|Arhgap7|HP|STARD12|dlc-1 deleted in liver cancer 1 protein-coding 0.015000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3283 chr8 15993353 15993553 + -1.58584 NA intron (NM_053171, intron 46 of 69) intron (NM_053171, intron 46 of 69) 175385 NR_037214 100526464 NR_037214 ENSMUSG00000093142 Mir3106 mir-3106|mmu-mir-3106 microRNA 3106 ncRNA 0.010000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1918 chr19 53722985 53723185 + -1.58584 NA intron (NM_001170847, intron 1 of 13) L1M4|LINE|L1 45779 NM_001170847 73713 Mm.313695 NM_001170847 ENSMUSG00000043639 Rbm20 1110018J23Rik|2010003H22Rik|AI646761 RNA binding motif protein 20 protein-coding 0.015000 0.388060 48(TCCTTGTGTTGTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2271 chr3 56500215 56500415 + -1.58800 NA Intergenic L1MA4|LINE|L1 -316614 NM_030595 26422 Mm.384353 NM_030595 ENSMUSG00000027799 Nbea Lyst2|mKIAA1544 neurobeachin protein-coding 0.005000 0.298507 -85(AATGCATATGAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3484 chr9 9949317 9949517 + -1.58800 NA intron (NM_001033359, intron 9 of 20) intron (NM_001033359, intron 9 of 20) 54986 NR_105745 102466147 NR_105745 ENSMUSG00000098408 Mir6237 Gm27411|mmu-mir-6237 microRNA 6237 ncRNA 0.005000 0.407960 -9(TTATTCTCATGGAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3311 chr8 34869274 34869474 + -1.58800 NA intron (NM_175091, intron 9 of 26) intron (NM_175091, intron 9 of 26) 61764 NM_176933 319520 Mm.170276 NM_176933 ENSMUSG00000031530 Dusp4 2700078F24Rik|AI844617|BB104621|E130306H24Rik|MKP2 dual specificity phosphatase 4 protein-coding 0.015000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-984 chr13 77729183 77729383 + -1.59031 NA intron (NM_001163419, intron 1 of 9) Lx5c|LINE|L1 20593 NM_001163419 68675 Mm.343005 NM_138312 ENSMUSG00000064138 Fam172a 1110033M05Rik|2610318O14Rik|53-E6|9430037D06Rik|AF064782|pEN87 family with sequence similarity 172, member A protein-coding 0.015000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3381 chr8 77783783 77783983 + -1.59031 NA Intergenic Zaphod2|DNA|hAT-Tip100 -59431 NM_010332 13617 Mm.283168 NM_010332 ENSMUSG00000031616 Ednra AEA001|ET-AR|ETa|Gpcr10|Mhdaaea1 endothelin receptor type A protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-501 chr10 103448374 103448574 + -1.59031 NA Intergenic Intergenic 80666 NM_001358821 103098 Mm.458408 NM_175328 ENSMUSG00000019894 Slc6a15 AA536730|AI326450|AI326451|v7-3 solute carrier family 6 (neurotransmitter transporter), member 15 protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3144 chr7 75100506 75100706 + -1.59031 NA Intergenic Intergenic 70395 NR_131122 75205 Mm.399304 NR_131122 ENSMUSG00000108803 4930533N22Rik Gm44904 RIKEN cDNA 4930533N22 gene ncRNA 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3038 chr6 103264385 103264585 + -1.59031 NA Intergenic Lx9|LINE|L1 -246391 NM_007697 12661 Mm.251288 NM_007697 ENSMUSG00000030077 Chl1 A530023M13Rik|AI465420|CALL|LICAM2 cell adhesion molecule L1-like protein-coding 0.010000 0.313433 -72(AATACATATGCATA,+,0.00),-72(AATACATATGCATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2691 chr4 128597062 128597262 + -1.59031 NA intron (NM_177758, intron 2 of 7) Lx8|LINE|L1 12936 NM_177758 269585 Mm.153291 NM_177758 ENSMUSG00000061894 Zscan20 C130001F22|Zfp31|Zkscan20 zinc finger and SCAN domains 20 protein-coding 0.005000 0.373134 -43(ATTCCATAATTCATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2146 chr2 139626603 139626803 + -1.59031 NA intron (NM_175467, intron 11 of 12) intron (NM_175467, intron 11 of 12) -51475 NM_001276489 319909 Mm.41113 NM_001126490 ENSMUSG00000074766 Ism1 5430433G21Rik|Ism isthmin 1, angiogenesis inhibitor protein-coding 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1817 chr18 86580353 86580553 + -1.59031 NA Intergenic Intergenic -130608 NM_001302356 12405 Mm.70775 NM_172633 ENSMUSG00000024647 Cbln2 6330593N19Rik|A730004O05 cerebellin 2 precursor protein protein-coding 0.005000 0.323383 65(AATACATATTTATT,+,0.00),65(AATACATATTTATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3644 chr9 111136124 111136324 + -1.59119 NA intron (NM_027742, intron 2 of 13) L1M4|LINE|L1 18113 NM_001164838 71268 Mm.302287 NM_027742 ENSMUSG00000032497 Lrrfip2 5133400F20Rik|AI850587 leucine rich repeat (in FLII) interacting protein 2 protein-coding 0.000000 0.293532 -99(TAATTGCCATTTTAAT,+,0.00),-69(TCTTTGTCATTTATTT,+,0.00),-53(ATTAAAAAAAAAAAAA,-,0.00),-22(ATTTACATGGAAGTGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1808 chr18 78895880 78896080 + -1.59270 NA intron (NM_053099, intron 3 of 5) MTEa|LTR|ERVL-MaLR 213411 NM_053099 240427 Mm.312871 NM_053099 ENSMUSG00000024548 Setbp1 C130092E12|Seb|mKIAA0437 SET binding protein 1 protein-coding 0.000000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3516 chr9 34472964 34473164 + -1.59270 NA Intergenic Intergenic -15667 NM_001190911 67703 Mm.220710 NM_026324 ENSMUSG00000032036 Kirrel3 1500010O20Rik|2900036G11Rik|NEPH2|SST4|mKIAA1867 kirre like nephrin family adhesion molecule 3 protein-coding 0.025000 0.452736 49(ATATCCAGGACAAAGT,-,0.00),71(CTCTGCATGCCAAAGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1266 chr15 20261661 20261861 + -1.59270 NA Intergenic Lx2|LINE|L1 404989 NM_022816 64833 Mm.352763 NM_022816 ENSMUSG00000047565 Acot10 Acate3|MT-ACT48|p48 acyl-CoA thioesterase 10 protein-coding 0.005000 0.402985 -56(ATTTGCACAACAAAGT,-,0.00),-11(AAATTCTTAGGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2799 chr5 66579168 66579368 + -1.59270 NA intron (NM_001201413, intron 1 of 16) MIRc|SINE|MIR 39549 NM_001201415 11787 Mm.5159 NM_009686 ENSMUSG00000029207 Apbb2 2310007D03Rik|FE65L1|Rirl1|TR2L|Zfra amyloid beta (A4) precursor protein-binding, family B, member 2 protein-coding 0.005000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2457 chr3 137267146 137267346 + -1.59270 NA Intergenic Intergenic -22371 NR_163863 0.005000 0.323383 -11(TCTTTATCATTCTATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1744 chr18 42328826 42329026 + -1.59312 NA intron (NM_172626, intron 16 of 19) L1_Mus3|LINE|L1 53573 NM_172626 225432 Mm.329400 NM_172626 ENSMUSG00000024491 Rbm27 A730010I06|AI043120|Psc1|mKIAA1311 RNA binding motif protein 27 protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1366 chr15 84286701 84286901 + -1.59312 NA intron (NM_133167, intron 4 of 12) intron (NM_133167, intron 4 of 12) -37919 NM_022321 64099 Mm.251356 NM_022321 ENSMUSG00000022439 Parvg AI413459 parvin, gamma protein-coding 0.015000 0.552239 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1465 chr16 47078704 47078904 + -1.59312 NA Intergenic L1MA9|LINE|L1 -581837 NM_021496 58998 Mm.40477 NM_021495 ENSMUSG00000022656 Nectin3 2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3 nectin cell adhesion molecule 3 protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1313 chr15 49773076 49773276 + -1.59511 NA Intergenic L1_Mur2|LINE|L1 -981187 NM_001081391 239420 Mm.309363 NM_001081391 ENSMUSG00000022311 Csmd3 4930500N14Rik|mKIAA1894 CUB and Sushi multiple domains 3 protein-coding 0.000000 0.348259 -34(ATCAACAAAATAATAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1018 chr13 99102417 99102617 + -1.59511 NA Intergenic Intergenic -14596 NR_045495 69603 Mm.390632 NR_045495 ENSMUSG00000100410 2310020H05Rik - RIKEN cDNA 2310020H05 gene ncRNA 0.020000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1773 chr18 55536925 55537125 + -1.59713 NA Intergenic L1M2|LINE|L1 -544434 NM_001360787 269023 Mm.192984 NM_175751 ENSMUSG00000052713 Zfp608 4932417D18Rik|D430007A19Rik|Znf608 zinc finger protein 608 protein-coding 0.000000 0.318408 23(TCTTTGCTATGCAGAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-755 chr12 30061883 30062083 + -1.59753 NA intron (NM_009417, intron 16 of 16) RLTR9A3A|LTR|ERVK 70641 NM_009417 22018 Mm.4991 NM_009417 ENSMUSG00000020673 Tpo - thyroid peroxidase protein-coding 0.005000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2283 chr3 60748473 60748673 + -1.59753 NA Intergenic Lx5b|LINE|L1 247394 NM_001253708 56758 Mm.255723 NM_020007 ENSMUSG00000027763 Mbnl1 Mbnl|mKIAA0428 muscleblind like splicing factor 1 protein-coding 0.010000 0.368159 70(TATTTATTATGTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-956 chr13 48074657 48074857 + -1.59753 NA intron (NR_102303, intron 1 of 2) intron (NR_102303, intron 1 of 2) -56149 NR_038004 70971 Mm.158514 NR_038004 ENSMUSG00000047324 4931429P17Rik - RIKEN cDNA 4931429P17 gene ncRNA 0.000000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-884 chr13 6214295 6214495 + -1.59753 NA Intergenic L1MA5|LINE|L1 -333762 NM_001360106 69617 Mm.41933 NM_145131 ENSMUSG00000021193 Pitrm1 2310012C15Rik|AA410010|MP-1|MP1|Ntup1|PreP|mKIAA1104 pitrilysin metallepetidase 1 protein-coding 0.005000 0.373134 -53(CATCACTATGCATT,+,0.00) -15(AGTTCCATGAGAATGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2732 chr5 15871321 15871521 + -1.59992 NA intron (NR_045974, intron 2 of 5) ORR1B2|LTR|ERVL-MaLR 12345 NR_045974 75058 Mm.183467 NR_045974 ENSMUSG00000105185 4930519H02Rik - RIKEN cDNA 4930519H02 gene ncRNA 0.005000 0.407960 -31(GTTTGAAAGAAAATGA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-252 chr17 44308298 44308498 + -1.60228 NA Intergenic Intergenic 119826 NM_172621 224796 Mm.37666 NM_172621 ENSMUSG00000023959 Clic5 5730531E12Rik|B330005L24|Gm322|jbg|nmf318 chloride intracellular channel 5 protein-coding 0.005000 0.358209 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-238 chr16 85207023 85207223 + -1.60386 NA Intergenic L1MC4a|LINE|L1 -33416 NM_001198825 11820 Mm.277585 NM_007471 ENSMUSG00000022892 App Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp amyloid beta (A4) precursor protein protein-coding 0.005000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1617 chr17 57509874 57510074 + -1.60460 NA intron (NM_001104591, intron 6 of 6) intron (NM_001104591, intron 6 of 6) 35340 NM_001104591 224916 Mm.469889 NM_001104591 ENSMUSG00000090655 Vmn2r120 EG224916 vomeronasal 2, receptor 120 protein-coding 0.005000 0.348259 -95(ATATTCATAATAAAAC,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-266 chr18 27928369 27928569 + -1.60460 NA Intergenic Intergenic -631695 NR_045398 320624 Mm.50107 NR_045398 ENSMUSG00000117473 4930474G06Rik - RIKEN cDNA 4930474G06 gene ncRNA 0.015000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2224 chr3 20218554 20218754 + -1.60516 NA intron (NM_007753, intron 10 of 10) intron (NM_007753, intron 10 of 10) 3705 NR_105974 102465609 NR_105974 ENSMUSG00000099105 Mir7007 Gm27897|mmu-mir-7007 microRNA 7007 ncRNA 0.000000 0.343284 4(TGTTTATGTTGTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3426 chr8 103995137 103995337 + -1.60549 NA Intergenic Intergenic -106388 NM_009868 12562 Mm.21767 NM_009868 ENSMUSG00000031871 Cdh5 7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec cadherin 5 protein-coding 0.005000 0.363184 -77(GCATGCTCTTTCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2481 chr3 147166831 147167031 + -1.60764 NA Intergenic Intergenic 314564 NM_001357217 70892 Mm.187793 NM_027594 ENSMUSG00000036745 Ttll7 1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7 tubulin tyrosine ligase-like family, member 7 protein-coding 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1538 chr16 85207227 85207427 + -1.60873 NA Intergenic Intergenic -33620 NM_001198825 11820 Mm.277585 NM_007471 ENSMUSG00000022892 App Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp amyloid beta (A4) precursor protein protein-coding 0.015000 0.462687 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-239 chr16 85207253 85207453 + -1.60873 NA Intergenic Intergenic -33646 NM_001198825 11820 Mm.277585 NM_007471 ENSMUSG00000022892 App Abeta|Abpp|Adap|Ag|Cvap|E030013M08Rik|betaApp amyloid beta (A4) precursor protein protein-coding 0.010000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-923 chr13 26358371 26358571 + -1.60910 NA Intergenic Intergenic -46065 NR_045933 73576 Mm.45473 NR_045933 ENSMUSG00000084811 1700092E19Rik - RIKEN cDNA 1700092E19 gene ncRNA 0.005000 0.398010 -81(TCATTCTCATTCATAA,+,0.00),81(CTGTTCTCATGCAGAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-946 chr13 40523124 40523324 + -1.60910 NA Intergenic Intergenic -204584 NR_125899 102633805 NR_125899 ENSMUSG00000097752 Gm26688 Tfap2a-as1 predicted gene, 26688 ncRNA 0.005000 0.427861 -55(GCATTGTAATGCACAG,+,0.00),-6(ATTAGAAAGAAAAAGG,-,0.00),12(TGTTTGTCTTGTAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3308 chr8 31891459 31891659 + -1.61128 NA intron (NM_001364429, intron 2 of 7) intron (NM_001364429, intron 2 of 7) 27284 NM_001364427 211323 Mm.153432 NM_178591 ENSMUSG00000062991 Nrg1 6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF neuregulin 1 protein-coding 0.015000 0.363184 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-122 chr12 68360929 68361129 + -1.61128 NA Intergenic Intergenic 798157 NM_009093 20090 Mm.379006 NM_009093 ENSMUSG00000034892 Rps29 - ribosomal protein S29 protein-coding 0.005000 0.298507 -98(CATTTATTATTCAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2422 chr3 124434276 124434476 + -1.61235 NA Intergenic L1_Mur3|LINE|L1 -8337 NM_001357195 71824 Mm.331353 NM_027939 ENSMUSG00000027973 1700006A11Rik - RIKEN cDNA 1700006A11 gene protein-coding 0.000000 0.313433 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-91 chr11 19633123 19633323 + -1.61340 NA Intergenic L1M5|LINE|L1 -291219 NM_033523 114716 Mm.266627 NM_033523 ENSMUSG00000045671 Spred2 C79158 sprouty-related EVH1 domain containing 2 protein-coding 0.005000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-152 chr1 83643643 83643843 + -1.61547 NA Intergenic Intergenic -235543 NM_001356547 77629 Mm.154303 NM_172430 ENSMUSG00000026163 Sphkap 4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678 SPHK1 interactor, AKAP domain containing protein-coding 0.020000 0.417910 -26(AACAGCATGACAATGA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-20 chr1 83643595 83643795 + -1.61547 NA Intergenic Intergenic -235495 NM_001356547 77629 Mm.154303 NM_172430 ENSMUSG00000026163 Sphkap 4930544G21Rik|A930009L15Rik|AI852220|SKIP|mKIAA1678 SPHK1 interactor, AKAP domain containing protein-coding 0.015000 0.373134 22(AACAGCATGACAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2120 chr2 128163302 128163502 + -1.61947 NA TTS (NM_009754) TTS (NM_009754) 35827 NM_001284410 12125 Mm.141083 NM_009754 ENSMUSG00000027381 Bcl2l11 1500006F24Rik|Bim|Bod|bcl2-L-11 BCL2-like 11 (apoptosis facilitator) protein-coding 0.015000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3642 chr9 109630722 109630922 + -1.62140 NA Intergenic Intergenic -4763 NM_001013776 382106 Mm.441401 NM_001013776 ENSMUSG00000062275 Fbxw24 EG382106|Gm5162 F-box and WD-40 domain protein 24 protein-coding 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1486 chr16 57532312 57532512 + -1.62906 NA intron (NM_001040397, intron 4 of 4) intron (NM_001040397, intron 4 of 4) -16830 NM_001177871 78749 Mm.328360 NM_001040397 ENSMUSG00000043336 Filip1l 4631422O05Rik|Doc1 filamin A interacting protein 1-like protein-coding 0.015000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3678 chrX 17565476 17565676 + -1.62906 NA intron (NM_001313746, intron 3 of 4) intron (NM_001313746, intron 3 of 4) 6431 NM_001313746 72018 Mm.41558 NM_028058 ENSMUSG00000025040 Fundc1 1500005J14Rik|1810033P05Rik FUN14 domain containing 1 protein-coding 0.010000 0.383085 65(ATTAAAAAGAAAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3722 chrX 88462819 88463019 + -1.62916 NA Intergenic MLTR25A|LTR|ERVK 296634 NR_035440 100316809 NR_035440 ENSMUSG00000084535 Mir1906-1 Mir1906|Mirn1906|mmu-mir-1906|mmu-mir-1906-1 microRNA 1906-1 ncRNA 0.005000 0.378109 -71(GTTTGCATAATAGTGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1318 chr15 52836592 52836792 + -1.62916 NA Intergenic Intergenic 124247 NM_027212 69790 Mm.195562 NM_027212 ENSMUSG00000038622 Med30 1810038N03Rik|2510044J04Rik|TRAP25|Thrap6 mediator complex subunit 30 protein-coding 0.005000 0.368159 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-160 chr14 18498331 18498531 + -1.62929 NA Intergenic L1MA5A|LINE|L1 -166587 NM_009455 22194 Mm.4429 NM_009455 ENSMUSG00000021774 Ube2e1 UbcM3|Ubce5|ubcM2 ubiquitin-conjugating enzyme E2E 1 protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1264 chr15 18495309 18495509 + -1.62970 NA Intergenic L1_Mur3|LINE|L1 -125782 NR_045711 70886 Mm.399021 NR_045711 ENSMUSG00000098150 4921515E04Rik - RIKEN cDNA 4921515E04 gene ncRNA 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-498 chr10 102553613 102553813 + -1.62970 NA Intergenic Intergenic 41491 NM_146240 237504 Mm.282672 NM_146240 ENSMUSG00000044921 Rassf9 AW322107|Pamci Ras association (RalGDS/AF-6) domain family (N-terminal) member 9 protein-coding 0.000000 0.278607 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2830 chr5 87799570 87799770 + -1.62970 NA Intergenic L1M2|LINE|L1 -8451 NM_009973 12992 Mm.153308 NM_009973 ENSMUSG00000061388 Csn1s2b AW987150|Csnd|Csne casein alpha s2-like B protein-coding 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3640 chr9 108684523 108684723 + -1.62976 NA TTS (NM_020520) TTS (NM_020520) -7520 NM_008924 19087 Mm.253102 NM_008924 ENSMUSG00000032601 Prkar2a 1110061A24Rik|AI317181|AI836829|RII(alpha) protein kinase, cAMP dependent regulatory, type II alpha protein-coding 0.010000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2829 chr5 87593496 87593696 + -1.62976 NA Intergenic L1MC3|LINE|L1 -1985 NM_023135 20860 Mm.89655 NM_023135 ENSMUSG00000029272 Sult1e1 EST|ST1E1|Ste sulfotransferase family 1E, member 1 protein-coding 0.000000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2359 chr3 99536688 99536888 + -1.63041 NA Intergenic Lx7|LINE|L1 283028 NM_009323 21384 Mm.88761 NM_009323 ENSMUSG00000027868 Tbx15 Tbx14|Tbx8|de T-box 15 protein-coding 0.010000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2622 chr4 82351712 82351912 + -1.63081 NA intron (NM_001113209, intron 5 of 11) intron (NM_001113209, intron 5 of 11) 153967 NM_001113210 18028 Mm.317947 NM_008687 ENSMUSG00000008575 Nfib 6720429L07Rik|CTF|E030026I10Rik|NF-I/B|NF1-B|NFI-B nuclear factor I/B protein-coding 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-584 chr11 27799922 27800122 + -1.63081 NA Intergenic Lx7|LINE|L1 784302 NM_001166661 216613 Mm.93759 NM_181577 ENSMUSG00000032878 Ccdc85a - coiled-coil domain containing 85A protein-coding 0.005000 0.348259 -88(TTTTAAAAGAAAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1513 chr16 71991492 71991692 + -1.63081 NA Intergenic Intergenic 242735 NR_131116 319533 Mm.373754 NR_131115 ENSMUSG00000116769 8030451O07Rik - RIKEN cDNA 8030451O07 gene ncRNA 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2730 chr5 14426970 14427170 + -1.63081 NA Intergenic MLT1A1|LTR|ERVL-MaLR -87848 NM_001110796 26875 Mm.146275 NM_011995 ENSMUSG00000061601 Pclo Acz|Pico piccolo (presynaptic cytomatrix protein) protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1732 chr18 35722108 35722308 + -1.63081 NA promoter-TSS (NM_001033141) promoter-TSS (NM_001033141) 165 NM_001368651 68545 Mm.329362 NM_001033141 ENSMUSG00000073599 Ecscr 1110006O17Rik|ARIA endothelial cell surface expressed chemotaxis and apoptosis regulator protein-coding 0.035000 0.601990 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3370 chr8 73567013 73567213 + -1.63121 NA Intergenic Intergenic -213573 NM_010687 16795 Mm.324371 NM_010687 ENSMUSG00000004383 Large1 BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd LARGE xylosyl- and glucuronyltransferase 1 protein-coding 0.000000 0.328358 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-525 chr8 73566987 73567187 + -1.63121 NA Intergenic Charlie2b|DNA|hAT-Charlie -213547 NM_010687 16795 Mm.324371 NM_010687 ENSMUSG00000004383 Large1 BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd LARGE xylosyl- and glucuronyltransferase 1 protein-coding 0.000000 0.288557 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3415 chr8 98315979 98316179 + -1.63272 NA Intergenic Intergenic -695808 NR_110579 100873092 Mm.414599 NR_110579 ENSMUSG00000089819 Gm15679 - predicted gene 15679 ncRNA 0.000000 0.338308 74(TATGCATATGTAGA,+,0.00),74(TATGCATATGTAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2793 chr5 61718749 61718949 + -1.63272 NA Intergenic RLTR42-int|LTR|ERVK -89994 NM_019468 14380 Mm.347430 NM_019468 ENSMUSG00000089992 G6pd2 G6pdx-ps1|Gpd-2|Gpd2 glucose-6-phosphate dehydrogenase 2 protein-coding 0.010000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3431 chr8 106247164 106247364 + -1.63272 NA intron (NM_145404, intron 14 of 17) intron (NM_145404, intron 14 of 17) -34965 NR_126090 75044 Mm.445896 NR_126090 4930506A18Rik - RIKEN cDNA 4930506A18 gene ncRNA 0.020000 0.557214 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3120 chr7 57687808 57688008 + -1.63272 NA intron (NM_001038701, intron 3 of 8) intron (NM_001038701, intron 3 of 8) 96735 NM_008071 14402 Mm.8004 NM_008071 ENSMUSG00000033676 Gabrb3 A230092K12Rik|AW049585|Cp1|Gabrb-3|beta3 gamma-aminobutyric acid (GABA) A receptor, subunit beta 3 protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-174 chr1 103135958 103136158 + -1.63272 NA Intergenic Intergenic -1632462 NM_011800 23836 Mm.103640 NM_011800 ENSMUSG00000050840 Cdh20 Cdh7 cadherin 20 protein-coding 0.000000 0.333333 -24(TTTTGAAAAACAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1856 chr19 22693655 22693855 + -1.63272 NA intron (NM_001362512, intron 1 of 8) intron (NM_001362512, intron 1 of 8) 1154 NM_001362512 226025 Mm.131943 NM_177341 ENSMUSG00000052387 Trpm3 6330504P12Rik|9330180E14|AU018608|B930001P07Rik|LTRPC3|MLSN2 transient receptor potential cation channel, subfamily M, member 3 protein-coding 0.010000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1814 chr18 84273134 84273334 + -1.63272 NA intron (NM_001033341, intron 8 of 8) intron (NM_001033341, intron 8 of 8) 185076 NM_146090 225791 Mm.147052 NM_146090 ENSMUSG00000049090 Zadh2 C530046K17Rik|PTGR-3|Pthr3 zinc binding alcohol dehydrogenase, domain containing 2 protein-coding 0.025000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2158 chr2 145048743 145048943 + -1.63272 NA Intergenic Intergenic -118932 NM_001356497 94249 Mm.217171 NM_053195 ENSMUSG00000063873 Slc24a3 NCKX3 solute carrier family 24 (sodium/potassium/calcium exchanger), member 3 protein-coding 0.000000 0.288557 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2942 chr6 25260566 25260766 + -1.63272 NA Intergenic L2a|LINE|L2 -304541 NM_177013 319832 Mm.127446 NM_177013 ENSMUSG00000048022 Tmem229a 6332401O19Rik transmembrane protein 229A protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3161 chr7 82429296 82429496 + -1.63272 NA intron (NM_001190374, intron 4 of 29) intron (NM_001190374, intron 4 of 29) 93702 NM_001190374 269959 Mm.65306 NM_001190374 ENSMUSG00000070469 Adamtsl3 9230119C12Rik|C130057K09|mKIAA1233 ADAMTS-like 3 protein-coding 0.000000 0.343284 -93(ATCAGCATGAAAATTG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-607 chr11 44626780 44626980 + -1.63272 NA intron (NM_001362579, intron 5 of 16) intron (NM_001362579, intron 5 of 16) 6652 NM_001362569 13591 Mm.439662 NM_007897 ENSMUSG00000057098 Ebf1 Ebf|O/E-1|OE-1|Olf-1|Olf1 early B cell factor 1 protein-coding 0.015000 0.457711 -70(ATTTGAATAATAGAAG,-,0.00),-45(ATCTTCAAGACAGAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2487 chr3 149963868 149964068 + -1.63528 NA Intergenic MTC|LTR|ERVL-MaLR 689231 NR_040591 381482 Mm.393866 NR_040591 Gm1653 - predicted gene 1653 ncRNA 0.020000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2173 chr2 153747068 153747268 + -1.63576 NA intron (NM_007896, intron 2 of 6) intron (NM_007896, intron 2 of 6) 5881 NM_007896 13589 Mm.143877 NM_007896 ENSMUSG00000027479 Mapre1 5530600P05Rik|AI462499|AI504412|AW260097|BIM1p|D2Ertd459e|Eb1 microtubule-associated protein, RP/EB family, member 1 protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1996 chr2 46820602 46820802 + -1.63576 NA Intergenic Intergenic 1124097 NR_040497 69405 Mm.396184 NR_040497 ENSMUSG00000086202 1700019E08Rik - RIKEN cDNA 1700019E08 gene ncRNA 0.000000 0.308458 70(AATACATATGTATA,+,0.00),70(AATACATATGTATA,-,0.00) 28(TCTTGGTCATGTAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2117 chr2 127350591 127350791 + -1.63576 NA intron (NM_172539, intron 8 of 8) intron (NM_172539, intron 8 of 8) 9055 NM_001291003 215095 Mm.31313 NM_172539 ENSMUSG00000050468 Astl 7420700F21|C87576|Sas1b astacin-like metalloendopeptidase (M12 family) protein-coding 0.015000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2703 chr4 141382738 141382938 + -1.63576 NA exon (NM_001085513, exon 6 of 7) exon (NM_001085513, exon 6 of 7) 14646 NM_001085513 277743 Mm.294614 NM_001085513 ENSMUSG00000006218 Fam131c Gm693 family with sequence similarity 131, member C protein-coding 0.030000 0.616915 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-704 chr11 108584811 108585011 + -1.63576 NA intron (NM_029606, intron 19 of 27) intron (NM_029606, intron 19 of 27) -97698 NM_145688 76380 Mm.344071 NM_029586 ENSMUSG00000020728 Cep112 1700001M19Rik|1700029K01Rik|8430407H02Rik|AV043680|AV207351|Ccdc46|Macoco centrosomal protein 112 protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2889 chr5 130641841 130642041 + -1.63576 NA intron (NM_181045, intron 4 of 6) intron (NM_181045, intron 4 of 6) 193149 NM_021371 140904 Mm.40875 NM_021371 ENSMUSG00000060371 Caln1 9630012C17Rik|Cabp8|MNCb-0849 calneuron 1 protein-coding 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1451 chr16 37134026 37134226 + -1.63576 NA intron (NM_172440, intron 24 of 27) intron (NM_172440, intron 24 of 27) 122340 NM_029977 77782 Mm.259114 NM_029977 ENSMUSG00000034206 Polq A430110D14Rik polymerase (DNA directed), theta protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3014 chr6 83931157 83931357 + -1.63576 NA intron (NM_001355286, intron 2 of 26) intron (NM_001355286, intron 2 of 26) 16904 NM_001355284 18139 Mm.132392 NM_008717 ENSMUSG00000030016 Zfp638 AI323587|Np220|Zfml|Znf638|mNP220 zinc finger protein 638 protein-coding 0.010000 0.353234 -100(TTTAGCAAAAGAAAAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3105 chr7 39691470 39691670 + -1.63576 NA Intergenic Intergenic 173804 NM_001004139 70227 Mm.333800 NM_001004139 ENSMUSG00000068959 Zfp619 3000002G13Rik zinc finger protein 619 protein-coding 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3248 chr7 136213345 136213545 + -1.63576 NA Intergenic Intergenic -54879 NR_102277 77383 Mm.227745 NR_102277 ENSMUSG00000110027 C030029H02Rik - RIKEN cDNA C030029H02 gene ncRNA 0.010000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3325 chr8 41634480 41634680 + -1.63576 NA Intergenic ORR1C1|LTR|ERVL-MaLR -192687 NR_045497 69966 Mm.416903 NR_045497 ENSMUSG00000102046 2810404M03Rik - RIKEN cDNA 2810404M03 gene ncRNA 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1912 chr19 51833869 51834069 + -1.63642 NA Intergenic Intergenic -430328 NM_008386 16333 Mm.46269 NM_008386 ENSMUSG00000035804 Ins1 Ins-1|Ins2-rs1 insulin I protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2615 chr4 78132648 78132848 + -1.64040 NA intron (NR_160919, intron 1 of 39) intron (NR_160919, intron 1 of 39) 78994 NM_011211 19266 Mm.184021 NM_011211 ENSMUSG00000028399 Ptprd 1110002J03Rik|3000002J10Rik|B230219D21Rik|R-PTP-delta protein tyrosine phosphatase, receptor type, D protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-864 chr12 103988735 103988935 + -1.64040 NA intron (NM_001166350, intron 1 of 4) intron (NM_001166350, intron 1 of 4) 1108 NM_199314 380780 Mm.201338 NM_199314 ENSMUSG00000063232 Serpina11 Gm895 serine (or cysteine) peptidase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 11 protein-coding 0.015000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-393 chr10 36472736 36472936 + -1.64040 NA Intergenic Intergenic -33971 NM_001253355 319415 Mm.332442 NM_001081208 ENSMUSG00000044499 Hs3st5 D930005L05Rik|Gm1151|Hs3ost5 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1250 chr15 12222195 12222395 + -1.64040 NA intron (NM_172958, intron 1 of 15) B4A|SINE|B4 17267 NM_172958 268783 Mm.54460 NM_172958 ENSMUSG00000039458 Mtmr12 3Pap|4932703C11|C730015A02Rik|Pip3ap|mKIAA1682 myotubularin related protein 12 protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-195 chr1 111670439 111670639 + -1.64040 NA Intergenic L1_Mus3|LINE|L1 194379 NM_001081316 319901 Mm.103468 NM_001081316 ENSMUSG00000038702 Dsel 9330132E09Rik|DS-epi2 dermatan sulfate epimerase-like protein-coding 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1428 chr16 23255543 23255743 + -1.64040 NA intron (NM_001252505, intron 1 of 7) intron (NM_001252505, intron 1 of 7) 29622 NM_001252505 20440 Mm.149029 NM_145933 ENSMUSG00000022885 St6gal1 AW742324|Siat1|St6Gal-I|St6gal|St6galI beta galactoside alpha 2,6 sialyltransferase 1 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-951 chr13 46001507 46001707 + -1.64040 NA Intergenic Intergenic -36616 NM_001199305 20238 Mm.342683 NM_009124 ENSMUSG00000046876 Atxn1 2900016G23Rik|Atx1|C85907|Gm10786|Sca1 ataxin 1 protein-coding 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2347 chr3 93135398 93135598 + -1.64040 NA Intergenic Intergenic -9291 NM_001081200 381457 Mm.458570 NM_001081200 ENSMUSG00000078657 Crnn Gm1015 cornulin protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-80 chr1 53882991 53883191 + -1.64040 NA intron (NM_001001883, intron 17 of 28) intron (NM_001001883, intron 17 of 28) 33667 NR_106149 102465783 NR_106149 ENSMUSG00000098443 Mir7681 Gm27806|mmu-mir-7681 microRNA 7681 ncRNA 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3508 chr9 29276133 29276333 + -1.64040 NA intron (NM_001357597, intron 2 of 8) PB1D10|SINE|Alu 136452 NM_001357601 235106 Mm.283138 NM_172290 ENSMUSG00000059974 Ntm 6230410L23Rik|B230210G24Rik|Hnt|Igdcc2|R75390 neurotrimin protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1039 chr13 113159685 113159885 + -1.64040 NA Intergenic Intergenic 21180 NM_008196 14945 Mm.56993 NM_008196 ENSMUSG00000042385 Gzmk - granzyme K protein-coding 0.000000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1472 chr16 50784199 50784399 + -1.64040 NA TTS (NR_131005) TTS (NR_131005) 890 NR_131006 78639 Mm.160109 NR_131005 ENSMUSG00000092276 1700116B05Rik - RIKEN cDNA 1700116B05 gene ncRNA 0.020000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2928 chr6 14511959 14512159 + -1.64040 NA Intergenic Lx3_Mus|LINE|L1 243215 NM_080464 140491 Mm.209429 NM_080464 ENSMUSG00000042717 Ppp1r3a GM|RG1|RGL protein phosphatase 1, regulatory subunit 3A protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1949 chr2 13431039 13431239 + -1.64040 NA intron (NM_001081084, intron 22 of 66) intron (NM_001081084, intron 22 of 66) 60737 NM_001081084 65969 Mm.313915 NM_001081084 ENSMUSG00000026726 Cubn AA408369|AL022750|D2Wsu88e cubilin (intrinsic factor-cobalamin receptor) protein-coding 0.000000 0.273632 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3027 chr6 94557119 94557319 + -1.64040 NA intron (NM_026255, intron 5 of 9) L1M2|LINE|L1 49196 NR_106008 102466992 NR_106008 ENSMUSG00000098531 Mir7041 Gm27872|mmu-mir-7041 microRNA 7041 ncRNA 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1806 chr18 76937851 76938051 + -1.64743 NA intron (NM_025409, intron 1 of 2) RLTR21|LTR|ERVK -6164 NM_001039202 76987 Mm.236127 NM_029826 ENSMUSG00000025421 Hdhd2 0610039H12Rik|3110052N05Rik haloacid dehalogenase-like hydrolase domain containing 2 protein-coding 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2500 chr3 155984659 155984859 + -1.64743 NA intron (NR_040553, intron 1 of 4) LTR55|LTR|ERVL? 8405 NR_040553 329780 Mm.119000 NR_040553 ENSMUSG00000104553 9330178D15Rik 9330178D15 RIKEN cDNA 9330178D15 gene ncRNA 0.000000 0.343284 -77(TCCTTTTCATTCAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1145 chr14 70708064 70708264 + -1.64743 NA promoter-TSS (NM_001359888) promoter-TSS (NM_001359888) -129 NM_001359888 65246 Mm.152987 NM_023045 ENSMUSG00000022100 Xpo7 4930506C02Rik|BB164534|Ranbp16|exp7 exportin 7 protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2971 chr6 46146331 46146531 + -1.64743 NA intron (NM_001004357, intron 8 of 23) intron (NM_001004357, intron 8 of 23) 1086370 NM_001004357 66797 Mm.440084 NM_025771 ENSMUSG00000039419 Cntnap2 5430425M22Rik|Caspr2|mKIAA0868 contactin associated protein-like 2 protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1454 chr16 37365826 37366026 + -1.64743 NA intron (NM_172440, intron 2 of 27) intron (NM_172440, intron 2 of 27) 19032 NM_001114612 207227 Mm.80170 NM_172440 ENSMUSG00000022829 Stxbp5l 9430094L02|A830015P08Rik|LLGL4|T2dm1|t2md1|tomosyn-2 syntaxin binding protein 5-like protein-coding 0.005000 0.348259 67(CATGAATTTTTATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3744 chrX 136903390 136903590 + -1.64743 NA Intergenic HERVL40-int|LTR|ERVL -23835 NM_027067 69389 Mm.302721 NM_027067 ENSMUSG00000048155 H2bfm 1700014N06Rik|H2bfw|H2bl2 H2B histone family, member M protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2107 chr2 121628413 121628613 + -1.64743 NA intron (NM_001360084, intron 1 of 13) intron (NM_001360084, intron 1 of 13) 120020 NM_001369185 241627 Mm.293284 NM_030234 ENSMUSG00000027242 Wdr76 5830411K18Rik|6030457D09|AA517836 WD repeat domain 76 protein-coding 0.025000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1922 chr19 57811908 57812108 + -1.64743 NA intron (NM_181415, intron 26 of 28) intron (NM_181415, intron 26 of 28) 200974 NM_181415 226255 Mm.245340 NM_181415 ENSMUSG00000054843 Atrnl1 AI504415|AW555641|Alp|Atrnl|Atrnlp attractin like 1 protein-coding 0.035000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3470 chr8 128617224 128617424 + -1.64743 NA Intergenic Intergenic -68330 NM_010578 16412 Mm.263396 NM_010578 ENSMUSG00000025809 Itgb1 4633401G24Rik|AA409975|AA960159|CD29|Fnrb|Gm9863|gpIIa integrin beta 1 (fibronectin receptor beta) protein-coding 0.005000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3166 chr7 86991782 86991982 + -1.64743 NA Intergenic Intergenic -4583 NM_001105190 621430 Mm.469903 NM_001105190 ENSMUSG00000090362 Vmn2r79 EG621430 vomeronasal 2, receptor 79 protein-coding 0.000000 0.283582 79(ATTTGATAGACAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-89 chr1 56893100 56893300 + -1.64743 NA intron (NM_139146, intron 5 of 10) intron (NM_139146, intron 5 of 10) 78134 NM_139146 212712 Mm.145599 NM_139146 ENSMUSG00000038331 Satb2 BAP002|mKIAA1034 special AT-rich sequence binding protein 2 protein-coding 0.025000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3208 chr7 113568092 113568292 + -1.64743 NA exon (NM_001285831, exon 13 of 13) exon (NM_001285831, exon 13 of 13) -3205 NR_126544 69295 Mm.396150 NR_126544 ENSMUSG00000084984 Far1os 1700006P19Rik fatty acyl CoA reductase 1, opposite strand ncRNA 0.020000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2724 chr5 12390907 12391107 + -1.64743 NA intron (NM_028882, intron 1 of 17) intron (NM_028882, intron 1 of 17) 7841 NM_028882 108151 Mm.89313 NM_028882 ENSMUSG00000040254 Sema3d 4631426B19Rik sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D protein-coding 0.000000 0.333333 -44(GCATGATTATGTTAAT,+,0.00),31(ATATTCATAACAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2845 chr5 95906276 95906476 + -1.64743 NA Intergenic Intergenic -50563 NM_018866 55985 Mm.10116 NM_018866 ENSMUSG00000023078 Cxcl13 4631412M08Rik|ANGIE2|Angie|BCA-1|BLC|BLR1L|Scyb13 chemokine (C-X-C motif) ligand 13 protein-coding 0.005000 0.318408 1(GATCCATAATGCAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2611 chr4 75140519 75140719 + -1.64743 NA Intergenic L1_Mus2|LINE|L1 137673 NM_025849 66928 Mm.24332 NM_025849 ENSMUSG00000028398 Dmac1 1700027K24Rik|3110001D03Rik|Tmem261 distal membrane arm assembly complex 1 protein-coding 0.005000 0.373134 -40(CCTTGGTCTTGCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-30 chr1 24070884 24071084 + -1.65302 NA intron (NM_026604, intron 3 of 20) L1MA7|LINE|L1 29357 NM_026604 68187 Mm.87130 NM_026604 ENSMUSG00000026153 Fam135a 4921533L14Rik|AI256732|AI835491 family with sequence similarity 135, member A protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-68 chr1 47472493 47472693 + -1.65674 NA Intergenic Intergenic -5468 NR_105768 102466969 NR_105768 ENSMUSG00000098876 Mir6350 Gm27958|mmu-mir-6350 microRNA 6350 ncRNA 0.000000 0.308458 46(ATTAGCATCAAAATAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3309 chr8 31891566 31891766 + -1.65674 NA intron (NM_001364429, intron 2 of 7) A-rich|Low_complexity|Low_complexity 27177 NM_001364427 211323 Mm.153432 NM_178591 ENSMUSG00000062991 Nrg1 6030402G23Rik|ARIA|D230005F13Rik|GGF|GGFII|HRG|HRGalpha|Hgl|NDF|SMDF neuregulin 1 protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2441 chr3 129295965 129296165 + -1.65735 NA intron (NM_007934, intron 10 of 19) intron (NM_007934, intron 10 of 19) 36684 NM_007934 13809 Mm.1193 NM_007934 ENSMUSG00000028024 Enpep 6030431M22Rik|APA|Bp-1/6C3|Ly-51|Ly51 glutamyl aminopeptidase protein-coding 0.010000 0.482587 -79(TTTTGCAAGACAGAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3204 chr7 112290159 112290359 + -1.65802 NA intron (NM_001193305, intron 3 of 25) intron (NM_001193305, intron 3 of 25) 64423 NM_001193305 320878 Mm.52312 NM_177282 ENSMUSG00000038244 Mical2 5330438E18Rik|9530064J02|MICAL-2|mKIAA0750 microtubule associated monooxygenase, calponin and LIM domain containing 2 protein-coding 0.015000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-504 chr10 104600240 104600440 + -1.65817 NA Intergenic L1MB5|LINE|L1 313071 NR_105838 102465222 NR_105838 ENSMUSG00000099264 Mir6411 Gm27767|mmu-mir-6411 microRNA 6411 ncRNA 0.005000 0.338308 -84(TTTTAATTATGCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1400 chr15 100314457 100314657 + -1.65817 NA TTS (NM_027334) TTS (NM_027334) 9740 NM_027334 70152 Mm.488086 NM_027334 ENSMUSG00000054619 Mettl7a1 2210414H16Rik|3300001H21Rik|Aam-B|Mettl7a|UbiE1 methyltransferase like 7A1 protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2373 chr3 104253941 104254141 + -1.65817 NA Intergenic Intergenic -33635 NM_133853 99470 Mm.264849 NM_133853 ENSMUSG00000052539 Magi3 4732496O19Rik|6530407C02Rik|AA407180|AI120132|mKIAA1634 membrane associated guanylate kinase, WW and PDZ domain containing 3 protein-coding 0.005000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1815 chr18 84329288 84329488 + -1.65817 NA intron (NM_001033341, intron 7 of 8) intron (NM_001033341, intron 7 of 8) 241230 NM_146090 225791 Mm.147052 NM_146090 ENSMUSG00000049090 Zadh2 C530046K17Rik|PTGR-3|Pthr3 zinc binding alcohol dehydrogenase, domain containing 2 protein-coding 0.030000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1461 chr16 43480237 43480437 + -1.65817 NA intron (NM_181058, intron 3 of 6) intron (NM_181058, intron 3 of 6) -60141 NR_046026 626693 Mm.447083 NR_046026 ENSMUSG00000085499 Gm15713 - predicted gene 15713 ncRNA 0.010000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-377 chr10 30081490 30081690 + -1.65817 NA Intergenic Intergenic 118950 NM_001109747 66311 Mm.251779 NM_001109747 ENSMUSG00000075266 Cenpw 2610036L11Rik|Cug2 centromere protein W protein-coding 0.005000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-980 chr13 74748631 74748831 + -1.65817 NA intron (NM_001301156, intron 2 of 28) intron (NM_001301156, intron 2 of 28) -14470 NM_001301160 12380 Mm.29163 NM_009817 ENSMUSG00000021585 Cast - calpastatin protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2933 chr6 18312515 18312715 + -1.65817 NA intron (NM_021050, intron 23 of 26) L2|LINE|L2 141928 NM_021050 12638 Mm.15621 NM_021050 ENSMUSG00000041301 Cftr AW495489|Abcc7 cystic fibrosis transmembrane conductance regulator protein-coding 0.000000 0.368159 -1(ATATAAATGACCAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3669 chr9 123793113 123793313 + -1.65817 NA intron (NM_148925, intron 18 of 18) intron (NM_148925, intron 18 of 18) -13264 NM_030712 80901 Mm.124289 NM_030712 ENSMUSG00000048521 Cxcr6 BB217514|BONZO|STRL33 chemokine (C-X-C motif) receptor 6 protein-coding 0.010000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1519 chr16 74480338 74480538 + -1.65817 NA intron (NM_001358491, intron 1 of 27) intron (NM_001358491, intron 1 of 27) -68613 NM_175549 268902 Mm.171736 NM_175549 ENSMUSG00000052516 Robo2 2600013A04Rik|9430089E08Rik|BB097918|D230004I22Rik|mKIAA1568 roundabout guidance receptor 2 protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1121 chr14 59760169 59760369 + -1.65817 NA intron (NM_015803, intron 32 of 35) intron (NM_015803, intron 32 of 35) 134988 NM_145463 219134 Mm.275409 NM_145463 ENSMUSG00000044461 Shisa2 9430059P22Rik|MAd2|Tmem46|mShisa|shisa shisa family member 2 protein-coding 0.015000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2312 chr3 73520560 73520760 + -1.65817 NA intron (NR_040557, intron 2 of 4) intron (NR_040557, intron 2 of 4) -39009 NR_040547 74693 Mm.292227 NR_040547 ENSMUSG00000102362 4930509J09Rik - RIKEN cDNA 4930509J09 gene ncRNA 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3623 chr9 97867450 97867650 + -1.65817 NA intron (NM_022319, intron 1 of 17) intron (NM_022319, intron 1 of 17) -135870 NR_110443 66737 Mm.445908 NR_110443 ENSMUSG00000090255 4921534H16Rik - RIKEN cDNA 4921534H16 gene ncRNA 0.025000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1733 chr18 36033943 36034143 + -1.65817 NA intron (NM_001167891, intron 4 of 9) intron (NM_001167891, intron 4 of 9) 69213 NM_028707 74002 Mm.196944 NM_028707 ENSMUSG00000024347 Psd2 6330404E20Rik|AW125584|EFA6C pleckstrin and Sec7 domain containing 2 protein-coding 0.020000 0.537313 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1138 chr14 67741710 67741910 + -1.65900 NA 3' UTR (NM_001285933, exon 12 of 12) 3' UTR (NM_001285933, exon 12 of 12) -3371 NM_008145 14714 Mm.358309 NM_008145 ENSMUSG00000015812 Gnrh1 Gnrh|Gnrh2|LHRH|Lhrh1|Lnrh|hpg gonadotropin releasing hormone 1 protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2253 chr3 45534704 45534904 + -1.66038 NA Intergenic Lx3C|LINE|L1 -95495 NR_040594 72274 Mm.396202 NR_040594 ENSMUSG00000100799 1700027H10Rik - RIKEN cDNA 1700027H10 gene ncRNA 0.000000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1373 chr15 90272446 90272646 + -1.66038 NA Intergenic Intergenic 48186 NR_106106 102466838 NR_106106 ENSMUSG00000099319 Mir7648 Gm27736|mmu-mir-7648 microRNA 7648 ncRNA 0.015000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-913 chr13 19537444 19537644 + -1.66038 NA Intergenic L1_Mus4|LINE|L1 -33177 NR_131037 319466 NR_131037 ENSMUSG00000114189 9330199G10Rik - RIKEN cDNA 9330199G10 gene ncRNA 0.005000 0.348259 45(ATTAGAATTACAATAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1073 chr14 18498435 18498635 + -1.66038 NA Intergenic L1MA5A|LINE|L1 -166691 NM_009455 22194 Mm.4429 NM_009455 ENSMUSG00000021774 Ube2e1 UbcM3|Ubce5|ubcM2 ubiquitin-conjugating enzyme E2E 1 protein-coding 0.000000 0.323383 33(TCTCTCACATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-303 chr1 184689869 184690069 + -1.66219 NA Intergenic Intergenic -22528 NR_040627 74971 Mm.410816 NR_040627 ENSMUSG00000092578 4930488B22Rik - RIKEN cDNA 4930488B22 gene ncRNA 0.015000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1332 chr15 56594071 56594271 + -1.66225 NA Intergenic Intergenic -95773 NR_002874 594843 Mm.484850 NR_002874 ENSMUSG00000086541 Has2os EG594843|Has2as|Hasnt hyaluronan synthase 2, opposite strand ncRNA 0.000000 0.328358 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-303 chr2 10453524 10453724 + -1.66225 NA intron (NM_177386, intron 9 of 22) RLTR1C|LTR|ERV1 -13039 NR_130333 100526481 NR_130333 ENSMUSG00000092793 Mir466m mmu-mir-466m microRNA 466m ncRNA 0.010000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2284 chr3 60916225 60916425 + -1.66225 NA Intergenic Intergenic -86460 NM_001282016 18441 Mm.281452 NM_008772 ENSMUSG00000027765 P2ry1 P2Y1 purinergic receptor P2Y, G-protein coupled 1 protein-coding 0.000000 0.303483 -29(ATGTTTTTATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1742 chr18 42049026 42049226 + -1.66225 NA Intergenic Intergenic -4584 NM_001146299 269016 Mm.45472 NM_172966 ENSMUSG00000057719 Sh3rf2 2310046K19|9130023G24Rik|AI452083|Ppp1r39|RNF158 SH3 domain containing ring finger 2 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2157 chr2 144941851 144942051 + -1.66475 NA Intergenic RLTR13A1|LTR|ERVK 118285 NM_025490 66328 Mm.45377 NM_025490 ENSMUSG00000027431 Scp2d1 1700010M22Rik SCP2 sterol-binding domain containing 1 protein-coding 0.010000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-902 chr13 16223040 16223240 + -1.66475 NA Intergenic L2c|LINE|L2 -199717 NR_155430 100503142 Mm.359204 NR_155430 B230303A05Rik B230303A05|EG328191 U1 small nuclear ribonucleoprotein 1C pseudogene pseudo 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1333 chr15 56594318 56594518 + -1.66475 NA Intergenic Intergenic -95526 NR_002874 594843 Mm.484850 NR_002874 ENSMUSG00000086541 Has2os EG594843|Has2as|Hasnt hyaluronan synthase 2, opposite strand ncRNA 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2039 chr2 72322305 72322505 + -1.66475 NA intron (NM_023057, intron 2 of 19) intron (NM_023057, intron 2 of 19) 36704 NM_001164791 65964 Mm.304143 NM_023057 ENSMUSG00000004085 Map3k20 AV006891|B230120H23Rik|HCCS-4|MLTK|MLTKalpha|MLTKbeta|Zak mitogen-activated protein kinase kinase kinase 20 protein-coding 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2545 chr4 32723363 32723563 + -1.66475 NA intron (NM_001081392, intron 48 of 101) intron (NM_001081392, intron 48 of 101) 66344 NM_001081392 100019 Mm.24627 NM_133874 ENSMUSG00000058006 Mdn1 4833432B22Rik|A130070M06|AA958993|D4Abb1e|Gm135 midasin AAA ATPase 1 protein-coding 0.025000 0.388060 -51(CTTTTGTCTTTTTTAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3155 chr7 80047991 80048191 + -1.66475 NA intron (NM_175433, intron 1 of 4) L1M5|LINE|L1 21863 NM_175433 209225 Mm.290925 NM_175433 ENSMUSG00000048897 Zfp710 5430400N05Rik|9830165K13|AI324798|Znf710 zinc finger protein 710 protein-coding 0.005000 0.398010 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-537 chr8 103995405 103995605 + -1.66577 NA Intergenic Lx9|LINE|L1 -106120 NM_009868 12562 Mm.21767 NM_009868 ENSMUSG00000031871 Cdh5 7B4|AA408225|Cd144|VE-Cad|VECD|VEcad|Vec cadherin 5 protein-coding 0.005000 0.348259 22(TGTACATATTCATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1497 chr16 64092650 64092850 + -1.66806 NA Intergenic Intergenic -228575 NM_001362452 13837 Mm.1977 NM_010140 ENSMUSG00000052504 Epha3 AW492086|Cek4|EK4|ETK1|End3|Hek|Hek4|Mek4|Tyro4 Eph receptor A3 protein-coding 0.005000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2792 chr5 61636925 61637125 + -1.66806 NA Intergenic Intergenic -171818 NM_019468 14380 Mm.347430 NM_019468 ENSMUSG00000089992 G6pd2 G6pdx-ps1|Gpd-2|Gpd2 glucose-6-phosphate dehydrogenase 2 protein-coding 0.000000 0.273632 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2067 chr2 100260563 100260763 + -1.66806 NA Intergenic Intergenic 1360383 NM_001362687 68170 Mm.31263 NM_026592 ENSMUSG00000027165 B230118H07Rik NWC RIKEN cDNA B230118H07 gene protein-coding 0.000000 0.338308 -72(TGTGAATATGTATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3481 chr9 9346515 9346715 + -1.67241 NA Intergenic L1_Mus3|LINE|L1 -107602 NM_027823 71544 Mm.334955 NM_027823 ENSMUSG00000050730 Arhgap42 9030420J04Rik|BE136619 Rho GTPase activating protein 42 protein-coding 0.005000 0.527363 -78(AGTTACAAGACAAAGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2119 chr2 128055207 128055407 + -1.67241 NA intron (NM_028765, intron 14 of 17) RLTR20C1_MM|LTR|ERVK -70731 NM_207681 12125 Mm.141083 NM_009754 ENSMUSG00000027381 Bcl2l11 1500006F24Rik|Bim|Bod|bcl2-L-11 BCL2-like 11 (apoptosis facilitator) protein-coding 0.005000 0.373134 20(TATTCATATTCATT,+,0.00),20(TATTCATATTCATT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2358 chr3 99459138 99459338 + -1.67241 NA Intergenic Intergenic 205478 NM_009323 21384 Mm.88761 NM_009323 ENSMUSG00000027868 Tbx15 Tbx14|Tbx8|de T-box 15 protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1515 chr16 72841638 72841838 + -1.67241 NA intron (NM_019413, intron 2 of 28) intron (NM_019413, intron 2 of 28) 178589 NM_019413 19876 Mm.310772 NM_019413 ENSMUSG00000022883 Robo1 AW494633|AW742721|DUTT1|Gm310 roundabout guidance receptor 1 protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2641 chr4 94191040 94191240 + -1.67498 NA Intergenic Intergenic 365656 NM_026368 67770 Mm.35170 NM_026368 ENSMUSG00000028578 Caap1 5830433M19Rik|AI536248|CAAP caspase activity and apoptosis inhibitor 1 protein-coding 0.005000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1054 chr14 5927273 5927473 + -1.67498 NA Intergenic RMER13A2|LTR|ERVK -119434 NM_001291094 100041515 Mm.443041 NM_001205306 ENSMUSG00000096629 Gm3383 - predicted gene 3383 protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-162 chr1 94623544 94623744 + -1.67498 NA Intergenic L1_Mur3|LINE|L1 -173798 NR_040473 74689 Mm.399187 NR_040473 ENSMUSG00000100518 4930440C22Rik - RIKEN cDNA 4930440C22 gene ncRNA 0.000000 0.303483 -64(CTAGTGTTATTCTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1136 chr14 66082064 66082264 + -1.67498 NA Intergenic Intergenic -4395 NM_009618 11495 Mm.422850 NM_009618 ENSMUSG00000022039 Adam2 AI323749|Ftnb|Ph30-beta a disintegrin and metallopeptidase domain 2 protein-coding 0.005000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-429 chr10 59102506 59102706 + -1.67498 NA intron (NM_172788, intron 7 of 9) intron (NM_172788, intron 7 of 9) 119241 NM_001024910 103080 Mm.346842 NM_001024910 ENSMUSG00000019917 Sept10 4921515A04Rik|9430099J10Rik|AA408298|AI874685 septin 10 protein-coding 0.025000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1788 chr18 65841932 65842132 + -1.67498 NA Intergenic Intergenic -31454 NM_175012 225642 Mm.20298 NM_175012 ENSMUSG00000024517 Grp BLP gastrin releasing peptide protein-coding 0.010000 0.338308 -36(TTTTTATTTTTTAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1660 chr17 85604635 85604835 + -1.67498 NA intron (NR_038085, intron 3 of 3) intron (NR_038085, intron 3 of 3) 13661 NR_038086 100043902 Mm.150838 NR_015385 ENSMUSG00000093460 Six3os1 D17Mgi26|E130112H22Rik|Rncr1|Six3os SIX homeobox 3, opposite strand 1 ncRNA 0.010000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2995 chr6 73768513 73768713 + -1.67498 NA Intergenic Lx9|LINE|L1 -159940 NR_157242 102634075 Mm.78553 NR_157242 ENSMUSG00000107441 Gm31747 - predicted gene, 31747 ncRNA 0.000000 0.383085 -88(TATGCATATACAAA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-332 chr2 128163352 128163552 + -1.67697 NA TTS (NM_009754) TTS (NM_009754) 35877 NM_001284410 12125 Mm.141083 NM_009754 ENSMUSG00000027381 Bcl2l11 1500006F24Rik|Bim|Bod|bcl2-L-11 BCL2-like 11 (apoptosis facilitator) protein-coding 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2916 chr6 5791674 5791874 + -1.67817 NA intron (NM_010063, intron 5 of 16) intron (NM_010063, intron 5 of 16) 66135 NM_001191023 13426 Mm.20893 NM_010063 ENSMUSG00000029757 Dync1i1 DH IC-1|DHIC-1|DIC|Dncic1|IC74 dynein cytoplasmic 1 intermediate chain 1 protein-coding 0.000000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1666 chr17 90836802 90837002 + -1.67817 NA intron (NM_001346957, intron 3 of 18) intron (NM_001346957, intron 3 of 18) -24267 NR_045463 78800 Mm.410772 NR_045463 ENSMUSG00000090160 4930480K15Rik - RIKEN cDNA 4930480K15 gene ncRNA 0.005000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1213 chr14 115282357 115282557 + -1.67817 NA intron (NM_175500, intron 2 of 7) intron (NM_175500, intron 2 of 7) 127095 NR_045761 75088 Mm.444706 NR_045761 ENSMUSG00000093551 4930505G20Rik - RIKEN cDNA 4930505G20 gene ncRNA 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3205 chr7 112797728 112797928 + -1.67817 NA intron (NM_001166584, intron 2 of 13) intron (NM_001166584, intron 2 of 13) 118472 NM_001166584 21676 Mm.24685 NM_009346 ENSMUSG00000055320 Tead1 2610024B07Rik|B230114H05Rik|Gtrgeo5|TEAD-1|TEF-1|Tcf13|mTEF-1 TEA domain family member 1 protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-25 chr1 20188267 20188467 + -1.68000 NA intron (NM_153179, intron 60 of 66) intron (NM_153179, intron 60 of 66) -168087 NR_045734 75028 Mm.417820 NR_045734 ENSMUSG00000089914 4930486I03Rik - RIKEN cDNA 4930486I03 gene ncRNA 0.000000 0.427861 25(AATGCATATGCTTA,+,0.00),25(AATGCATATGCTTA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3 chr1 20188192 20188392 + -1.68000 NA intron (NM_153179, intron 60 of 66) intron (NM_153179, intron 60 of 66) -168162 NR_045734 75028 Mm.417820 NR_045734 ENSMUSG00000089914 4930486I03Rik - RIKEN cDNA 4930486I03 gene ncRNA 0.000000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-815 chr12 68360943 68361143 + -1.68000 NA Intergenic Intergenic 798143 NM_009093 20090 Mm.379006 NM_009093 ENSMUSG00000034892 Rps29 - ribosomal protein S29 protein-coding 0.005000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2458 chr3 137482729 137482929 + -1.68304 NA Intergenic Intergenic 69833 NM_177665 229862 Mm.246591 NM_177665 Gm4861 9230109N16|EG229862 predicted gene 4861 protein-coding 0.010000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1049 chr13 116517539 116517739 + -1.68582 NA Intergenic Intergenic -207951 NM_021459 16392 Mm.42242 NM_021459 ENSMUSG00000042258 Isl1 - ISL1 transcription factor, LIM/homeodomain protein-coding 0.000000 0.288557 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1852 chr19 20291340 20291540 + -1.68582 NA Intergenic ORR1C1|LTR|ERVL-MaLR 99231 NM_010730 16952 Mm.248360 NM_010730 ENSMUSG00000024659 Anxa1 Anx-1|Anx-A1|C430014K04Rik|Lpc-1|Lpc1 annexin A1 protein-coding 0.000000 0.363184 -97(CTTTGAATGAAAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2018 chr2 57955081 57955281 + -1.68582 NA Intergenic Lx4A|LINE|L1 -42974 NM_172855 241391 Mm.484118 NM_172855 ENSMUSG00000026828 Galnt5 4832424J23 polypeptide N-acetylgalactosaminyltransferase 5 protein-coding 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-618 chr11 51809735 51809935 + -1.68582 NA Intergenic Intergenic 46172 NM_025535 66397 Mm.196592 NM_025535 ENSMUSG00000020386 Sar1b 2310075M17Rik|2900019I22Rik|CMRD|Sara1b|Sara2|Sarb secretion associated Ras related GTPase 1B protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3059 chr6 116807874 116808074 + -1.68582 NA Intergenic Intergenic -91216 NM_178768 319776 Mm.133120 NM_178768 ENSMUSG00000048108 Tmem72 C230095G01Rik transmembrane protein 72 protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-457 chr10 77565536 77565736 + -1.68582 NA TTS (NR_157229) TTS (NR_157229) -16019 NM_145925 108705 Mm.28853 NM_145925 ENSMUSG00000009291 Pttg1ip 1810010L20Rik|AI314311|AU018448|C79540|PBF pituitary tumor-transforming 1 interacting protein protein-coding 0.010000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2136 chr2 136645807 136646007 + -1.68582 NA Intergenic Intergenic -67543 NR_149318 20614 Mm.45953 NM_011428 ENSMUSG00000027273 Snap25 Bdr|GENA70|SNAP-25|SUP|sp synaptosomal-associated protein 25 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-804 chr12 59582709 59582909 + -1.68582 NA Intergenic HAL1b|LINE|L1 -363326 NM_001033156 70611 Mm.311026 NM_001033156 ENSMUSG00000035329 Fbxo33 5730501N20Rik|AI642135 F-box protein 33 protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2612 chr4 75266588 75266788 + -1.68582 NA Intergenic Intergenic 11604 NM_025849 66928 Mm.24332 NM_025849 ENSMUSG00000028398 Dmac1 1700027K24Rik|3110001D03Rik|Tmem261 distal membrane arm assembly complex 1 protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1045 chr13 114794192 114794392 + -1.68582 NA Intergenic Lx9|LINE|L1 -23945 NM_013826 17434 Mm.19027 NM_013826 ENSMUSG00000015536 Mocs2 AI415403 molybdenum cofactor synthesis 2 protein-coding 0.005000 0.388060 27(CATAAATATGCAAA,+,0.00),27(CATAAATATGCAAA,-,0.00) -68(CTTTTCTCCTTCAGAT,+,0.00),-20(TCATTGCCTTTCAGAT,+,0.00),16(ATTTACATAGGCATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2565 chr4 45888219 45888419 + -1.68582 NA Intergenic L1_Rod|LINE|L1 -1984 NM_198660 381522 Mm.54220 NM_198660 ENSMUSG00000035539 Ccdc180 E230008N13Rik|Gm1025 coiled-coil domain containing 180 protein-coding 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3153 chr7 79133452 79133652 + -1.69471 NA TTS (NM_008594) TTS (NM_008594) -2534 NM_178255 67666 Mm.178759 NM_178255 ENSMUSG00000030606 Hapln3 4930554N11Rik|Lpr3 hyaluronan and proteoglycan link protein 3 protein-coding 0.010000 0.601990 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1218 chr14 117516085 117516285 + -1.69522 NA intron (NM_001079844, intron 3 of 9) intron (NM_001079844, intron 3 of 9) 437662 NR_105747 102465148 NR_105747 ENSMUSG00000098648 Mir6239 Gm28025|mmu-mir-6239 microRNA 6239 ncRNA 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1229 chr14 122482469 122482669 + -1.69614 NA Intergenic Intergenic -1796 NR_153443 110821 Mm.23876 NM_144844 ENSMUSG00000041650 Pcca C79630 propionyl-Coenzyme A carboxylase, alpha polypeptide protein-coding 0.035000 0.567164 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1375 chr15 90742402 90742602 + -1.69614 NA Intergenic Lx8|LINE|L1 -63114 NM_001033851 66871 Mm.290991 NM_025815 ENSMUSG00000052560 Cpne8 1200003E11Rik|1500031E20Rik copine VIII protein-coding 0.010000 0.388060 -25(AATTGCATGATACTGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2877 chr5 119755509 119755709 + -1.69614 NA Intergenic Intergenic -64391 NR_040416 433944 Mm.491053 NR_040416 ENSMUSG00000086847 Tbx3os2 Gm16065 T-box 3, opposite strand 2 ncRNA 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-632 chr11 60120633 60120833 + -1.69614 NA intron (NM_009021, intron 1 of 5) intron (NM_009021, intron 1 of 5) 15720 NM_009021 19377 Mm.296366 NM_009021 ENSMUSG00000062115 Rai1 Gt1 retinoic acid induced 1 protein-coding 0.000000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1812 chr18 81652788 81652988 + -1.69614 NA Intergenic Intergenic 339192 NR_039589 100628596 NR_039589 ENSMUSG00000093036 Mir5127 mmu-mir-5127|mu-mir-5127 microRNA 5127 ncRNA 0.035000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3388 chr8 80869510 80869710 + -1.69614 NA intron (NM_021356, intron 1 of 9) intron (NM_021356, intron 1 of 9) 10869 NM_021356 14388 Mm.277409 NM_021356 ENSMUSG00000031714 Gab1 AA408973|AW107238 growth factor receptor bound protein 2-associated protein 1 protein-coding 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1186 chr14 96280287 96280487 + -1.69614 NA intron (NM_053105, intron 4 of 10) intron (NM_053105, intron 4 of 10) 238647 NM_053105 93688 Mm.308735 NM_053105 ENSMUSG00000022076 Klhl1 mKIAA1490 kelch-like 1 protein-coding 0.000000 0.333333 -17(GCATTGTAATTGTAAT,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-253 chr17 50127494 50127694 + -1.69628 NA intron (NM_181397, intron 2 of 9) intron (NM_181397, intron 2 of 9) 62903 NM_181397 76438 Mm.41854 NM_181397 ENSMUSG00000039316 Rftn1 2310015N21Rik|AI853526 raftlin lipid raft linker 1 protein-coding 0.015000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1609 chr17 50127453 50127653 + -1.69754 NA intron (NM_181397, intron 2 of 9) intron (NM_181397, intron 2 of 9) 62944 NM_181397 76438 Mm.41854 NM_181397 ENSMUSG00000039316 Rftn1 2310015N21Rik|AI853526 raftlin lipid raft linker 1 protein-coding 0.010000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2486 chr3 149963561 149963761 + -1.69904 NA Intergenic Intergenic 688924 NR_040591 381482 Mm.393866 NR_040591 Gm1653 - predicted gene 1653 ncRNA 0.000000 0.378109 81(ATTAGCAAAAGAAGTC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1959 chr2 20482516 20482716 + -1.69950 NA intron (NM_001081006, intron 2 of 21) intron (NM_001081006, intron 2 of 21) -27431 NM_029895 208618 Mm.237935 NM_029895 ENSMUSG00000036617 Etl4 6620402G01Rik|9430077C05Rik|BC026657|E330027G05Rik|Etl-4|Skt enhancer trap locus 4 protein-coding 0.020000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2397 chr3 117310820 117311020 + -1.70081 NA Intergenic Intergenic 49956 NM_177664 229791 Mm.140138 NM_177664 ENSMUSG00000044667 Plppr4 A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455 phospholipid phosphatase related 4 protein-coding 0.005000 0.452736 29(ATTTCCATGACAATGA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-377 chr3 117310753 117310953 + -1.70081 NA Intergenic Intergenic 50023 NM_177664 229791 Mm.140138 NM_177664 ENSMUSG00000044667 Plppr4 A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455 phospholipid phosphatase related 4 protein-coding 0.005000 0.447761 -82(TTTTCCATAAAAATGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2398 chr3 117310979 117311179 + -1.70081 NA Intergenic Intergenic 49797 NM_177664 229791 Mm.140138 NM_177664 ENSMUSG00000044667 Plppr4 A330086D10|D3Bwg0562e|Lppr4|PRG-1|mKIAA0455 phospholipid phosphatase related 4 protein-coding 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3334 chr8 44493173 44493373 + -1.70257 NA Intergenic Intergenic -456935 NM_001081286 14107 Mm.27365 NM_001081286 ENSMUSG00000070047 Fat1 2310038E12Rik|AU023433|Fath|mFat1 FAT atypical cadherin 1 protein-coding 0.015000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-991 chr13 81901044 81901244 + -1.70257 NA Intergenic (TCCC)n|Simple_repeat|Simple_repeat 117897 NM_007684 12626 Mm.12481 NM_007684 ENSMUSG00000021537 Cetn3 MmCEN3 centrin 3 protein-coding 0.000000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-338 chr10 9651541 9651741 + -1.70257 NA intron (NM_177271, intron 1 of 1) intron (NM_177271, intron 1 of 1) 23567 NM_177271 320825 Mm.101115 NM_177271 ENSMUSG00000060487 Samd5 E130306M17Rik sterile alpha motif domain containing 5 protein-coding 0.015000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3410 chr8 93900139 93900339 + -1.70545 NA intron (NM_001113384, intron 3 of 7) intron (NM_001113384, intron 3 of 7) -86684 NR_026888 75809 Mm.443272 NM_029449 4930488L21Rik 4930452J22Rik RIKEN cDNA 4930488L21 gene ncRNA 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2520 chr4 15679048 15679248 + -1.70545 NA Intergenic Intergenic -202116 NM_009788 12307 Mm.277665 NM_009788 ENSMUSG00000028222 Calb1 Brain-2|CB|Calb|Calb-1 calbindin 1 protein-coding 0.005000 0.363184 -51(CTTTTCTCTTGCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3422 chr8 101528913 101529113 + -1.70545 NA Intergenic Intergenic 1256098 NM_009866 12552 Mm.1571 NM_009866 ENSMUSG00000031673 Cdh11 Cad11|OSF-4 cadherin 11 protein-coding 0.010000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2710 chr5 3299970 3300170 + -1.70545 NA Intergenic Intergenic -43823 NM_009873 12571 Mm.31672 NM_009873 ENSMUSG00000040274 Cdk6 AI504062|Crk2 cyclin-dependent kinase 6 protein-coding 0.005000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1582 chr17 12998539 12998739 + -1.70545 NA Intergenic Lx4A|LINE|L1 -6100 NM_175394 60532 Mm.275521 NM_175394 ENSMUSG00000060475 Wtap 2810408K05Rik|9430038B09Rik Wilms tumour 1-associating protein protein-coding 0.000000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2363 chr3 101146091 101146291 + -1.70828 NA Intergenic Intergenic -36025 NM_011197 19221 Mm.24807 NM_011197 ENSMUSG00000027864 Ptgfrn 4833445A08Rik|AU042434|CD9P-1|EWI-F|FPRP|Trim45 prostaglandin F2 receptor negative regulator protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3755 chrX 144442574 144442774 + -1.70852 NA intron (NM_009428, intron 3 of 10) Tigger5b|DNA|TcMar-Tigger -13908 NM_001195579 100503240 Mm.387258 NM_001195579 ENSMUSG00000072934 Trpc5os Gm15070 transient receptor potential cation channel, subfamily C, member 5, opposite strand protein-coding 0.010000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1075 chr14 20423070 20423270 + -1.71028 NA intron (NM_001163639, intron 13 of 27) B4A|SINE|B4 29055 NM_001163639 76670 Mm.159759 NM_029698 ENSMUSG00000039543 Cfap70 Ttc18 cilia and flagella associated protein 70 protein-coding 0.015000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1569 chr17 5377068 5377268 + -1.71028 NA Intergenic Intergenic 41599 NM_175349 106557 Mm.432764 NM_175349 ENSMUSG00000101959 Ldhal6b 4933402O15Rik|AI326310|LDHL|Ldhal lactate dehydrogenase A-like 6B protein-coding 0.010000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2953 chr6 36334315 36334515 + -1.71028 NA non-coding (NR_015589, exon 6 of 6) non-coding (NR_015589, exon 6 of 6) -53669 NM_203491 243764 Mm.448632 NM_203491 ENSMUSG00000045613 Chrm2 AChR-M2|Chrm-2|M2 cholinergic receptor, muscarinic 2, cardiac protein-coding 0.005000 0.368159 56(TATTTTTGTTGCATAT,+,0.00),70(ATTTTGTTATGCTGAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2130 chr2 134131157 134131357 + -1.71028 NA Intergenic Intergenic 423095 NM_010403 15112 Mm.26634 NM_010403 ENSMUSG00000027261 Hao1 GOX|Gox1|Hao-1 hydroxyacid oxidase 1, liver protein-coding 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3704 chrX 59202425 59202625 + -1.71028 NA intron (NM_001356335, intron 1 of 4) L1MDa|LINE|L1 -36437 NM_001290415 14168 Mm.7995 NM_010200 ENSMUSG00000031137 Fgf13 Fhf2 fibroblast growth factor 13 protein-coding 0.000000 0.313433 -61(ATTTGAATGACAGTGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1907 chr19 49026363 49026563 + -1.71028 NA Intergenic Intergenic 820438 NM_025696 66673 Mm.70980 NM_025696 ENSMUSG00000063434 Sorcs3 6330404A12Rik|AW045579 sortilin-related VPS10 domain containing receptor 3 protein-coding 0.000000 0.318408 -32(ATAAGAATGAGAAAAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-308 chr1 186018696 186018896 + -1.71028 NA Intergenic Intergenic 98514 NM_146106 226791 Mm.257116 NM_146106 ENSMUSG00000039246 Lyplal1 BC027340|Q96AVO lysophospholipase-like 1 protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1752 chr18 47087382 47087582 + -1.71028 NA 3' UTR (NM_178377, exon 7 of 7) 3' UTR (NM_178377, exon 7 of 7) 128606 NM_178377 69456 Mm.210734 NM_178377 ENSMUSG00000042705 Commd10 2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre COMM domain containing 10 protein-coding 0.005000 0.497512 13(GTTTGCAAGACCAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-736 chr12 15457361 15457561 + -1.71028 NA Intergenic Intergenic 343640 NR_105809 102465204 NR_105809 ENSMUSG00000098480 Mir6387 Gm27281|mmu-mir-6387 microRNA 6387 ncRNA 0.000000 0.303483 -17(CTTTACATGAGTATGT,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-526 chr8 73571204 73571404 + -1.71069 NA Intergenic RLTR13D4|LTR|ERVK -217764 NM_010687 16795 Mm.324371 NM_010687 ENSMUSG00000004383 Large1 BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd LARGE xylosyl- and glucuronyltransferase 1 protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1154 chr14 74542292 74542492 + -1.71069 NA Intergenic Intergenic -98482 NM_172812 15558 Mm.214351 NM_172812 ENSMUSG00000034997 Htr2a 5-HT-2|5-HT-2A|E030013E04|Htr-2|Htr2 5-hydroxytryptamine (serotonin) receptor 2A protein-coding 0.015000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2512 chr4 8812735 8812935 + -1.71288 NA intron (NM_001277149, intron 7 of 37) intron (NM_001277149, intron 7 of 37) 61511 NM_001355382 320790 Mm.138792 NM_001033395 ENSMUSG00000041235 Chd7 A730019I05Rik|Cycn|Cyn|Dz|Edy|Flo|GENA 47|GENA 60|Gena 52|Lda|Mt|Obt|Todo|WBE1|Whi|metis chromodomain helicase DNA binding protein 7 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2568 chr4 48579653 48579853 + -1.71288 NA Intergenic Intergenic -5421 NM_021436 230157 Mm.422686 NM_021436 ENSMUSG00000028347 Tmeff1 A830033E11|M7365|TR-1|Tr1 transmembrane protein with EGF-like and two follistatin-like domains 1 protein-coding 0.010000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1889 chr19 38857085 38857285 + -1.71581 NA intron (NM_001362424, intron 1 of 10) intron (NM_001362424, intron 1 of 10) 20606 NM_145952 209478 Mm.391153 NM_145952 ENSMUSG00000048720 Tbc1d12 BC033574 TBC1D12: TBC1 domain family, member 12 protein-coding 0.010000 0.373134 -74(CATACATATTCACA,+,0.00),8(TATGTATATGTATG,+,0.00),8(TATGTATATGTATG,-,0.00),86(TATGCATACGCATA,+,0.00),86(TATGCATACGCATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1710 chr18 27928241 27928441 + -1.71581 NA Intergenic Intergenic -631823 NR_045398 320624 Mm.50107 NR_045398 ENSMUSG00000117473 4930474G06Rik - RIKEN cDNA 4930474G06 gene ncRNA 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1616 chr17 57509728 57509928 + -1.71581 NA intron (NM_001104591, intron 6 of 6) intron (NM_001104591, intron 6 of 6) 35486 NM_001104591 224916 Mm.469889 NM_001104591 ENSMUSG00000090655 Vmn2r120 EG224916 vomeronasal 2, receptor 120 protein-coding 0.000000 0.358209 51(ATATTCATAATAAAAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-242 chr1 142899261 142899461 + -1.72067 NA Intergenic Intergenic -741336 NM_020025 26878 Mm.285580 NM_020025 ENSMUSG00000033849 B3galt2 - UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2171 chr2 151569579 151569779 + -1.72067 NA Intergenic Intergenic -2944 NM_145535 228765 Mm.32068 NM_145535 ENSMUSG00000027456 Sdcbp2 - syndecan binding protein (syntenin) 2 protein-coding 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3670 chr9 124046520 124046720 + -1.72225 NA Intergenic Intergenic 24649 NM_009914 12771 Mm.57050 NM_009914 ENSMUSG00000035448 Ccr3 CC-CKR3|CKR3|Cmkbr1l2|Cmkbr3 chemokine (C-C motif) receptor 3 protein-coding 0.000000 0.323383 -17(AATGCATATGTATT,+,0.00),-17(AATGCATATGTATT,-,0.00),18(TTTAAATATGCATT,+,0.00) -28(GTTAGAAAAAGAATGC,-,0.00),9(GTATTGATATTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1975 chr2 33507345 33507545 + -1.72225 NA Intergenic Intergenic -38913 NM_001355611 71834 Mm.44186 NM_027947 ENSMUSG00000026788 Zbtb43 1700010E06Rik|Zfp297b|mKIAA0414 zinc finger and BTB domain containing 43 protein-coding 0.010000 0.363184 -52(ATATGCTCATGCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-506 chr10 104730932 104731132 + -1.72225 NA Intergenic Intergenic 443763 NR_105838 102465222 NR_105838 ENSMUSG00000099264 Mir6411 Gm27767|mmu-mir-6411 microRNA 6411 ncRNA 0.010000 0.378109 9(TCTTTATGATGCTCAT,+,0.00),40(ATATGAATGGCTAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3035 chr6 101584442 101584642 + -1.72225 NA Intergenic Intergenic -189707 NR_027989 207157 Mm.57632 NM_177579 ENSMUSG00000052236 Gm9871 0610005I04|EG207157 predicted gene 9871 ncRNA 0.015000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2637 chr4 91477252 91477452 + -1.72225 NA Intergenic Intergenic -77368 NM_207685 15569 Mm.318042 NM_010486 ENSMUSG00000008489 Elavl2 Hub|mel-N1 ELAV like RNA binding protein 1 protein-coding 0.010000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-183 chr1 107614559 107614759 + -1.72225 NA Intergenic Lx6|LINE|L1 24653 NM_011459 20725 Mm.83909 NM_011459 ENSMUSG00000026315 Serpinb8 CAP-2|CAP2|NK10|Spi8|ovalbumin serine (or cysteine) peptidase inhibitor, clade B, member 8 protein-coding 0.000000 0.318408 -64(ATTTACATAACAGATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-328 chr10 5591747 5591947 + -1.72225 NA Intergenic Intergenic -1881 NM_026793 68632 Mm.338242 NM_026793 ENSMUSG00000046916 Myct1 1110020B04Rik|AI225941|AI642973|Mtmc1 myc target 1 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-304 chr1 184690074 184690274 + -1.72432 NA Intergenic Lx5|LINE|L1 -22323 NR_040627 74971 Mm.410816 NR_040627 ENSMUSG00000092578 4930488B22Rik - RIKEN cDNA 4930488B22 gene ncRNA 0.010000 0.462687 53(CTCCTGTCATGCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1378 chr15 90999860 91000060 + -1.72545 NA intron (NM_001109041, intron 1 of 35) intron (NM_001109041, intron 1 of 35) 49991 NM_016705 16564 Mm.41379 NM_016705 ENSMUSG00000022629 Kif21a - kinesin family member 21A protein-coding 0.005000 0.338308 -31(AATGATTTATGCAAG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-582 chrX 144442499 144442699 + -1.72585 NA intron (NM_009428, intron 3 of 10) intron (NM_009428, intron 3 of 10) -13983 NM_001195579 100503240 Mm.387258 NM_001195579 ENSMUSG00000072934 Trpc5os Gm15070 transient receptor potential cation channel, subfamily C, member 5, opposite strand protein-coding 0.015000 0.417910 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-175 chr14 74542254 74542454 + -1.72757 NA Intergenic Intergenic -98520 NM_172812 15558 Mm.214351 NM_172812 ENSMUSG00000034997 Htr2a 5-HT-2|5-HT-2A|E030013E04|Htr-2|Htr2 5-hydroxytryptamine (serotonin) receptor 2A protein-coding 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3546 chr9 57965736 57965936 + -1.73022 NA Intergenic Intergenic 25724 NM_011352 20361 Mm.335187 NM_011352 ENSMUSG00000038264 Sema7a 2900057C09Rik|CDw108|H-Sema K1|H-Sema-L|M-Sema-L|Semal|sema K1|sema L sema domain, immunoglobulin domain (Ig), and GPI membrane anchor, (semaphorin) 7A protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3249 chr7 136674512 136674712 + -1.73022 NA intron (NR_046021, intron 5 of 5) intron (NR_046021, intron 5 of 5) 35992 NR_046021 621677 Mm.207290 NR_046021 ENSMUSG00000110101 Gm6249 EG621677 predicted gene 6249 ncRNA 0.005000 0.388060 -32(ATCTGCAGAACAAACA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3272 chr8 11061866 11062066 + -1.73022 NA Intergenic Intergenic -53037 NM_001081212 384783 Mm.407207 NM_001081212 ENSMUSG00000038894 Irs2 Irs-2 insulin receptor substrate 2 protein-coding 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1059 chr14 10130498 10130698 + -1.73022 NA intron (NM_001308286, intron 2 of 6) intron (NM_001308286, intron 2 of 6) 246503 NR_030680 100042415 Mm.235938 NR_030680 ENSMUSG00000089686 Mnd1-ps Gm3833 Mnd1 retrotransposed pseudogene pseudo 0.010000 0.363184 -42(ACATTTGCTTTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1857 chr19 23211186 23211386 + -1.73022 NA intron (NM_153808, intron 21 of 23) intron (NM_153808, intron 21 of 23) 61313 NM_001252685 226026 Mm.23267 NM_153808 ENSMUSG00000024943 Smc5 MLZ-453|SMC-5|Smc5l1|mKIAA0594|mSMC5 structural maintenance of chromosomes 5 protein-coding 0.005000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3223 chr7 123598322 123598522 + -1.73022 NA Intergenic MLT1A1|LTR|ERVL-MaLR -97796 NM_001081329 210162 Mm.135397 NM_175435 ENSMUSG00000030757 Zkscan2 9430065N20Rik|AW493225|Zfp694 zinc finger with KRAB and SCAN domains 2 protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1568 chr17 5124261 5124461 + -1.73022 NA intron (NM_001085355, intron 3 of 19) intron (NM_001085355, intron 3 of 19) 129287 NM_001085355 239985 Mm.133401 NM_001085355 ENSMUSG00000069729 Arid1b 8030481M12|9330189K18Rik|AI836955|Ardi1b|B230217J03Rik|BAF250B|mKIAA1235 AT rich interactive domain 1B (SWI-like) protein-coding 0.005000 0.283582 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1346 chr15 67571729 67571929 + -1.73022 NA Intergenic Intergenic 345060 NR_045140 69334 Mm.63770 NR_045140 ENSMUSG00000102069 1700012I11Rik - RIKEN cDNA 1700012I11 gene ncRNA 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3532 chr9 47608735 47608935 + -1.73022 NA intron (NM_001025600, intron 1 of 8) intron (NM_001025600, intron 1 of 8) 78483 NM_207675 54725 Mm.234832 NM_018770 ENSMUSG00000032076 Cadm1 2900073G06Rik|3100001I08Rik|AI987920|Bl2|Igsf4|Igsf4a|Necl2|RA175|RA175A|RA175B|RA175C|RA175N|ST17|SgIGSF|SynCam|Tslc1 cell adhesion molecule 1 protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-570 chr11 20263075 20263275 + -1.73022 NA Intergenic Intergenic -13751 NM_172260 216543 Mm.260314 NM_172260 ENSMUSG00000044066 Cep68 6030463E10Rik|AI481761|BC027174|Kiaa0582 centrosomal protein 68 protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3276 chr8 11236503 11236703 + -1.73022 NA intron (NR_133670, intron 18 of 52) intron (NR_133670, intron 18 of 52) -76202 NM_009932 12827 Mm.181021 NM_009932 ENSMUSG00000031503 Col4a2 Col4a-2 collagen, type IV, alpha 2 protein-coding 0.015000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-967 chr13 57125227 57125427 + -1.73022 NA Intergenic Intergenic -229538 NM_001302373 26946 Mm.62409 NM_012035 ENSMUSG00000021541 Trpc7 TRP7|Trrp8 transient receptor potential cation channel, subfamily C, member 7 protein-coding 0.025000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2124 chr2 129389322 129389522 + -1.73022 NA Intergenic Intergenic -18283 NM_008361 16176 Mm.222830 NM_008361 ENSMUSG00000027398 Il1b IL-1beta|Il-1b interleukin 1 beta protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3182 chr7 93839796 93839996 + -1.73022 NA Intergenic Lx9|LINE|L1 -655720 NM_001358087 100040298 Mm.260904 NM_001358087 Gm15501 EyeLinc5 predicted pseudogene 15501 protein-coding 0.010000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2531 chr4 23446898 23447098 + -1.73310 NA Intergenic Intergenic 956450 NR_131335 105500046 NR_131335 ENSMUSG00000107859 Gm30731 Pnky|lnc-pou3f2 predicted gene, 30731 ncRNA 0.010000 0.407960 -20(CATGCATATTTCAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1955 chr2 19622576 19622776 + -1.73345 NA Intergenic Intergenic -35055 NM_027715 71198 Mm.83981 NM_027715 ENSMUSG00000043415 Otud1 4933428L19Rik OTU domain containing 1 protein-coding 0.000000 0.333333 -60(CAATTGAAATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3499 chr9 23907004 23907204 + -1.73345 NA Intergenic Intergenic -190914 NM_175678 319239 Mm.130824 NM_175678 ENSMUSG00000043659 Npsr1 9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 0.000000 0.328358 -6(AGTGAATAATTTATG,+,0.00),-6(AGTGAATAATTTATG,-,0.00) 32(ATTTTAAAGATAATGA,-,0.00),83(ATATAAAAGAAAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1480 chr16 55766074 55766274 + -1.73425 NA Intergenic Lx7|LINE|L1 55964 NM_001159394 80859 Mm.247272 NM_030612 ENSMUSG00000035356 Nfkbiz AA408868|INAP|Mail nuclear factor of kappa light polypeptide gene enhancer in B cells inhibitor, zeta protein-coding 0.000000 0.303483 -36(ATTTGCAAGTTAATGA,-,0.00),24(ATATATTCATGTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-537 chr10 125545030 125545230 + -1.73425 NA Intergenic Intergenic -216167 NM_011391 20503 Mm.29161 NM_011391 ENSMUSG00000020102 Slc16a7 4921534N07Rik|9030411M13Rik|D630004K10Rik|Mct2 solute carrier family 16 (monocarboxylic acid transporters), member 7 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1429 chr16 23479439 23479639 + -1.73425 NA intron (NM_001359083, intron 8 of 10) intron (NM_001359083, intron 8 of 10) 41276 NM_008555 17174 Mm.1213 NM_008555 ENSMUSG00000022887 Masp1 AW048060|CCPII|Crarf|Masp1/3 mannan-binding lectin serine peptidase 1 protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3674 chrX 13085505 13085705 + -1.73425 NA intron (NM_009481, intron 1 of 44) intron (NM_009481, intron 1 of 44) 14107 NM_009481 22284 Mm.242646 NM_009481 ENSMUSG00000031010 Usp9x 5730589N07Rik|AA407302|AA407699|AL022658|AL022749|Dffrx|FAF-X|Fafl ubiquitin specific peptidase 9, X chromosome protein-coding 0.000000 0.318408 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-36 chr1 184690050 184690250 + -1.73995 NA Intergenic Lx5|LINE|L1 -22347 NR_040627 74971 Mm.410816 NR_040627 ENSMUSG00000092578 4930488B22Rik - RIKEN cDNA 4930488B22 gene ncRNA 0.010000 0.422886 77(CTCCTGTCATGCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2604 chr4 70916662 70916862 + -1.74191 NA Intergenic Intergenic -381834 NM_172694 230316 Mm.251188 NM_172694 ENSMUSG00000039270 Megf9 4933405H16Rik|9630025C07|Egfl5|mKIAA0818 multiple EGF-like-domains 9 protein-coding 0.000000 0.313433 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-274 chr18 43725478 43725678 + -1.74341 NA Intergenic Lx8|LINE|L1 11659 NM_009258 20730 Mm.272 NM_009258 ENSMUSG00000024503 Spink1 Spink3|p12 serine peptidase inhibitor, Kazal type 1 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3645 chr9 111136330 111136530 + -1.74765 NA intron (NM_027742, intron 2 of 13) intron (NM_027742, intron 2 of 13) 18319 NM_001164838 71268 Mm.302287 NM_027742 ENSMUSG00000032497 Lrrfip2 5133400F20Rik|AI850587 leucine rich repeat (in FLII) interacting protein 2 protein-coding 0.015000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2943 chr6 25774716 25774916 + -1.74984 NA intron (NM_133931, intron 7 of 17) L1_Mus1|LINE|L1 34402 NM_133931 101185 Mm.274589 NM_133931 ENSMUSG00000029676 Pot1a 1500031H18Rik|AI851169|Pot1 protection of telomeres 1A protein-coding 0.015000 0.393035 -85(CCTTAGTCTTGCAAAC,+,0.00),19(ATGTAAATGAAAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3762 chrX 151491147 151491347 + -1.74984 NA Intergenic Intergenic -29425 NM_001113354 320595 Mm.17156 NM_177201 ENSMUSG00000041229 Phf8 9830141C09Rik|mKIAA1111 PHD finger protein 8 protein-coding 0.005000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-13 chr1 13143805 13144005 + -1.74984 NA intron (NM_008678, intron 22 of 22) PB1D11|SINE|Alu -16742 NM_001081209 383491 Mm.309380 NM_001081209 ENSMUSG00000042414 Prdm14 - PR domain containing 14 protein-coding 0.025000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1102 chr14 36328284 36328484 + -1.74984 NA Intergenic Intergenic 233419 NM_175008 218921 Mm.212464 NM_175008 ENSMUSG00000096405 4930474N05Rik - RIKEN cDNA 4930474N05 gene protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1424 chr16 18028567 18028767 + -1.74984 NA Intergenic Intergenic -24193 NM_010047 13353 Mm.27155 NM_010047 ENSMUSG00000003531 Dgcr6 - DiGeorge syndrome critical region gene 6 protein-coding 0.020000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3365 chr8 68251471 68251671 + -1.74984 NA Intergenic MTE2a|LTR|ERVL-MaLR -24957 NM_028182 72281 Mm.40974 NM_028182 ENSMUSG00000053886 Sh2d4a 2210402M20Rik|SH2A SH2 domain containing 4A protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3092 chr7 3275570 3275770 + -1.74984 NA Intergenic Intergenic -13368 NM_001093764 50918 Mm.29874 NM_016969 ENSMUSG00000068566 Myadm D7Wsu62e myeloid-associated differentiation marker protein-coding 0.010000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-686 chr11 97791742 97791942 + -1.74984 NA Intergenic B3|SINE|B2 -7723 NM_010688 16796 Mm.271967 NM_010688 ENSMUSG00000038366 Lasp1 AA408629|Def-4|LASP-1|MLN 50|SH3P6|Tg(Col1a1-lacZ)1Ngma LIM and SH3 protein 1 protein-coding 0.000000 0.393035 -36(TCATTTGCATGTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3172 chr7 88963105 88963305 + -1.74984 NA Intergenic Lx2A1|LINE|L1 375582 NM_028343 72759 Mm.208477 NM_028343 ENSMUSG00000039428 Tmem135 2810439K08Rik|AW319712|PMP52 transmembrane protein 135 protein-coding 0.000000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2225 chr3 20218762 20218962 + -1.75100 NA intron (NM_007753, intron 10 of 10) intron (NM_007753, intron 10 of 10) 3497 NR_105974 102465609 NR_105974 ENSMUSG00000099105 Mir7007 Gm27897|mmu-mir-7007 microRNA 7007 ncRNA 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1835 chr19 11017272 11017472 + -1.75225 NA intron (NM_001251849, intron 1 of 6) intron (NM_001251849, intron 1 of 6) 591 NM_001251849 76002 Mm.139320 NM_001251849 ENSMUSG00000094584 Ms4a18 5033428B15Rik membrane-spanning 4-domains, subfamily A, member 18 protein-coding 0.010000 0.422886 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-195 chr15 23092688 23092888 + -1.75225 NA intron (NM_001081299, intron 1 of 11) intron (NM_001081299, intron 1 of 11) 56325 NM_001081299 320865 Mm.241965 NM_001081299 ENSMUSG00000040420 Cdh18 B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol cadherin 18 protein-coding 0.010000 0.378109 6(TTCTCCATGAGAATAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3423 chr8 102570471 102570671 + -1.75226 NA Intergenic Intergenic 214540 NM_009866 12552 Mm.1571 NM_009866 ENSMUSG00000031673 Cdh11 Cad11|OSF-4 cadherin 11 protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-888 chr13 8855402 8855602 + -1.75226 NA intron (NM_001039389, intron 3 of 4) intron (NM_001039389, intron 3 of 4) 15542 NM_001039389 207615 Mm.284654 NM_172445 ENSMUSG00000021147 Wdr37 - WD repeat domain 37 protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3060 chr6 117381682 117381882 + -1.75226 NA Intergenic Lx10|LINE|L1 -113453 NR_152214 100126203 Mm.217172 NR_152214 6820426E19Rik Gm43983 RIKEN cDNA 6820426E19 gene ncRNA 0.005000 0.393035 65(TATGTATATGTATG,+,0.00),65(TATGTATATGTATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3643 chr9 109630820 109631020 + -1.75272 NA Intergenic Intergenic -4861 NM_001013776 382106 Mm.441401 NM_001013776 ENSMUSG00000062275 Fbxw24 EG382106|Gm5162 F-box and WD-40 domain protein 24 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-270 chr1 160025025 160025225 + -1.75751 NA Intergenic MER96B|DNA|hAT-Tip100 -19255 NR_028111 67647 Mm.171518 NM_001024470 ENSMUSG00000090394 4930523C07Rik - RIKEN cDNA 4930523C07 gene protein-coding 0.015000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1361 chr15 81393896 81394096 + -1.75939 NA intron (NM_133726, intron 1 of 11) B3|SINE|B2 5698 NM_133726 70356 Mm.180337 NM_133726 ENSMUSG00000022403 St13 1110007I03Rik|3110002K08Rik|AW555194|HIP|HOP|HSPABP|HSPABP1|PRO0786|SNC6|p48 suppression of tumorigenicity 13 protein-coding 0.000000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3740 chrX 133654952 133655152 + -1.75939 NA intron (NM_001105246, intron 2 of 4) intron (NM_001105246, intron 2 of 4) -32728 NR_153117 102632590 Mm.403836 NR_153117 ENSMUSG00000096978 Gm26851 - predicted gene, 26851 ncRNA 0.000000 0.273632 -40(AATAAATAAATCATT,+,0.00) -30(TCATTATTTTTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1214 chr14 116656890 116657090 + -1.75939 NA Intergenic Intergenic -268307 NM_001079844 23888 Mm.440025 NM_011821 ENSMUSG00000058571 Gpc6 - glypican 6 protein-coding 0.010000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1151 chr14 73682243 73682443 + -1.75939 NA Intergenic Intergenic 129557 NM_001361638 20916 Mm.38951 NM_011506 ENSMUSG00000022110 Sucla2 4930547K18Rik|A-SCS|SCS-betaA succinate-Coenzyme A ligase, ADP-forming, beta subunit protein-coding 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1719 chr18 31542567 31542767 + -1.75939 NA Intergenic Intergenic 67263 NM_026165 67453 Mm.23896 NM_026165 ENSMUSG00000024259 Slc25a46 1200007B05Rik|AI325987 solute carrier family 25, member 46 protein-coding 0.005000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1092 chr14 29141322 29141522 + -1.75939 NA intron (NM_009785, intron 13 of 37) intron (NM_009785, intron 13 of 37) 123214 NM_176920 319476 Mm.95780 NM_176920 ENSMUSG00000045776 Lrtm1 A930016D02Rik leucine-rich repeats and transmembrane domains 1 protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-838 chr12 89050623 89050823 + -1.75939 NA intron (NM_172544, intron 2 of 19) MLTR14|LTR|ERV1 97333 NM_172544 18191 Mm.425766 NM_172544 ENSMUSG00000066392 Nrxn3 - neurexin III protein-coding 0.010000 0.393035 55(ATTACCACAACAATTA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-726 chr12 7960842 7961042 + -1.75939 NA Intergenic B4A|SINE|B4 -16735 NM_009693 238055 Mm.221239 NM_009693 ENSMUSG00000020609 Apob AI315052|Apo B-100|apob-100|apob-48 apolipoprotein B protein-coding 0.005000 0.472637 -45(TATGTATAATGCATG,+,0.00),-45(TATGTATAATGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-723 chr12 6115258 6115458 + -1.75939 NA Intergenic (TATATG)n|Simple_repeat|Simple_repeat 739638 NR_015579 72669 Mm.10434 NM_028318 2810032G03Rik AI461720 RIKEN cDNA 2810032G03 gene ncRNA 0.000000 0.378109 -56(CATGCATATGTATC,+,0.00),-56(CATGCATATGTATC,-,0.00),-26(CATGCATATGTATC,+,0.00),-26(CATGCATATGTATC,-,0.00) -63(CTATAGGCATGCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-661 chr11 78454435 78454635 + -1.75939 NA Intergenic Intergenic -11166 NM_026740 52466 Mm.131618 NM_026740 ENSMUSG00000020829 Slc46a1 1110002C08Rik|D11Ertd18e|HCP1|Pcft solute carrier family 46, member 1 protein-coding 0.025000 0.552239 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3656 chr9 117026612 117026812 + -1.75939 NA intron (NM_001172123, intron 3 of 14) intron (NM_001172123, intron 3 of 14) 225771 NM_001172126 207181 Mm.326411 NM_178660 ENSMUSG00000039607 Rbms3 6720477E09Rik|8430436O14Rik RNA binding motif, single stranded interacting protein protein-coding 0.015000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2226 chr3 20219047 20219247 + -1.76076 NA intron (NM_007753, intron 10 of 10) intron (NM_007753, intron 10 of 10) 3212 NR_105974 102465609 NR_105974 ENSMUSG00000099105 Mir7007 Gm27897|mmu-mir-7007 microRNA 7007 ncRNA 0.005000 0.283582 -74(ACATTGTAATTGTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3754 chrX 144442435 144442635 + -1.76076 NA intron (NM_009428, intron 3 of 10) intron (NM_009428, intron 3 of 10) -14047 NM_001195579 100503240 Mm.387258 NM_001195579 ENSMUSG00000072934 Trpc5os Gm15070 transient receptor potential cation channel, subfamily C, member 5, opposite strand protein-coding 0.005000 0.427861 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-379 chr3 124434188 124434388 + -1.76385 NA Intergenic L1_Mur3|LINE|L1 -8249 NM_001357195 71824 Mm.331353 NM_027939 ENSMUSG00000027973 1700006A11Rik - RIKEN cDNA 1700006A11 gene protein-coding 0.000000 0.308458 -78(AATGTATCATGTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2632 chr4 87464848 87465048 + -1.76456 NA Intergenic Intergenic -234408 NM_172426 76376 Mm.490487 NM_172426 ENSMUSG00000037996 Slc24a2 2810021B17Rik|6330417K15Rik|AI847460|Nckx2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 protein-coding 0.010000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1676 chr18 7239503 7239703 + -1.76506 NA intron (NM_001357492, intron 11 of 20) L1_Mus1|LINE|L1 58333 NM_001357492 74934 Mm.107918 NM_001081393 ENSMUSG00000061802 Armc4 4930463I21Rik|b2b227.1Clo|b2b643Clo armadillo repeat containing 4 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2432 chr3 126343625 126343825 + -1.76506 NA Intergenic Intergenic -20127 NM_173451 271970 Mm.317021 NM_173451 ENSMUSG00000046561 Arsj 9330196J05Rik|D830047F08 arylsulfatase J protein-coding 0.000000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-476 chr10 88162833 88163033 + -1.76506 NA intron (NM_027191, intron 5 of 9) Lx7|LINE|L1 15862 NM_028334 69736 Mm.222184 NM_027191 ENSMUSG00000035351 Nup37 2410003L22Rik|2810039M17Rik nucleoporin 37 protein-coding 0.015000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1278 chr15 26373213 26373413 + -1.76664 NA intron (NM_001310774, intron 2 of 2) intron (NM_001310774, intron 2 of 2) 64265 NM_177597 211147 Mm.54257 NM_177597 ENSMUSG00000022269 March11 9630025C22 membrane-associated ring finger (C3HC4) 11 protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2796 chr5 62924655 62924855 + -1.76664 NA Intergenic Intergenic 113099 NM_001170705 100322896 NM_001170705 ENSMUSG00000090326 Dthd1 Gm17384 death domain containing 1 protein-coding 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3414 chr8 96920134 96920334 + -1.77057 NA Intergenic Intergenic -1031833 NM_010325 14719 Mm.230169 NM_010325 ENSMUSG00000031672 Got2 AL022787|FABP-pm|Got-2|Kyat4|mAspAT glutamatic-oxaloacetic transaminase 2, mitochondrial protein-coding 0.010000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-472 chr10 85591231 85591431 + -1.77057 NA intron (NM_028709, intron 3 of 16) intron (NM_028709, intron 3 of 16) -7080 NM_001017525 74007 Mm.36544 NM_028709 ENSMUSG00000020042 Btbd11 6330404E16Rik BTB (POZ) domain containing 11 protein-coding 0.015000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-234 chr1 137639738 137639938 + -1.77057 NA Intergenic Intergenic -326617 NR_029795 735252 NR_029795 ENSMUSG00000065565 Mir181a-1 Mirn181a-1|Mirn213|miR-213|mir-181a-1|mmu-mir-213 microRNA 181a-1 ncRNA 0.010000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1748 chr18 44774503 44774703 + -1.77057 NA intron (NM_001085373, intron 1 of 18) intron (NM_001085373, intron 1 of 18) 37579 NM_001085373 328949 Mm.312511 NM_001033406 ENSMUSG00000071856 Mcc D18Ertd451e|E330037C19 mutated in colorectal cancers protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2262 chr3 52024932 52025132 + -1.77057 NA intron (NM_001004176, intron 1 of 4) intron (NM_001004176, intron 1 of 4) 79974 NM_001004176 433586 Mm.234972 NM_001004176 ENSMUSG00000061143 Maml3 AV234550|BC049812|Mam-2|mKIAA1816 mastermind like transcriptional coactivator 3 protein-coding 0.000000 0.517413 84(CTGTCCATGACAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1697 chr18 20309249 20309449 + -1.77057 NA Intergenic Intergenic -1524 NM_010079 13510 Mm.37953 NM_010079 ENSMUSG00000069441 Dsg1a DG1|DGI|Dsg1|dsg1-alpha desmoglein 1 alpha protein-coding 0.000000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-154 chr1 87111658 87111858 + -1.77057 NA Intergenic Intergenic -10152 NM_001081082 76768 Mm.58068 NM_001081082 ENSMUSG00000079440 Alpi 2010001C14Rik|Akp6|gIAP alkaline phosphatase, intestinal protein-coding 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3103 chr7 35611849 35612049 + -1.77057 NA intron (NM_001358876, intron 12 of 27) intron (NM_001358876, intron 12 of 27) 25702 NM_001358876 245886 Mm.272620 NM_145633 ENSMUSG00000034867 Ankrd27 AA408090|BC016493|D330003H11Rik|Varp ankyrin repeat domain 27 (VPS9 domain) protein-coding 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-652 chr11 68933874 68934074 + -1.77057 NA Intergenic B3A|SINE|B2 -6893 NM_145746 252868 Mm.76826 NM_145746 ENSMUSG00000032921 Odf4 Oppo1 outer dense fiber of sperm tails 4 protein-coding 0.010000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1000 chr13 86438113 86438313 + -1.77057 NA Intergenic Lx6|LINE|L1 -391418 NM_007749 12867 Mm.378898 NM_007749 ENSMUSG00000017778 Cox7c COXVIIc|Cox7c1 cytochrome c oxidase subunit 7C protein-coding 0.005000 0.477612 -35(TTTTGCATGACAATTT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1925 chr19 59620824 59621024 + -1.77057 NA Intergenic Intergenic 127788 NR_045308 72647 Mm.410849 NR_045308 ENSMUSG00000100119 2700089I24Rik - RIKEN cDNA 2700089I24 gene ncRNA 0.005000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-953 chr13 47347898 47348098 + -1.77057 NA Intergenic Intergenic 153995 NM_001170643 218215 Mm.287609 NM_146042 ENSMUSG00000038068 Rnf144b BC025007|E130105P19Rik|Ibrdc2|Pir2 ring finger protein 144B protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3363 chr8 67171447 67171647 + -1.77057 NA Intergenic Intergenic 311330 NM_001163564 234344 Mm.334561 NM_001163564 ENSMUSG00000014907 Naf1 Gm174 nuclear assembly factor 1 ribonucleoprotein protein-coding 0.010000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-835 chr12 85317041 85317241 + -1.77057 NA intron (NM_145138, intron 10 of 21) RLTR22_Mur|LTR|ERVK 22221 NM_145138 217718 Mm.29071 NM_145138 ENSMUSG00000034290 Nek9 C130021H08Rik NIMA (never in mitosis gene a)-related expressed kinase 9 protein-coding 0.005000 0.363184 37(CTTACATATGCATA,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-458 chr6 9503996 9504196 + -1.77515 NA Intergenic Intergenic 554077 NM_008751 18231 Mm.46954 NM_008751 ENSMUSG00000046178 Nxph1 C130005L03Rik neurexophilin 1 protein-coding 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2921 chr6 9504019 9504219 + -1.77515 NA Intergenic Intergenic 554100 NM_008751 18231 Mm.46954 NM_008751 ENSMUSG00000046178 Nxph1 C130005L03Rik neurexophilin 1 protein-coding 0.015000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1774 chr18 56979244 56979444 + -1.77750 NA Intergenic Intergenic -3965 NM_029909 77422 Mm.256874 NM_029909 ENSMUSG00000024592 C330018D20Rik AU018666 RIKEN cDNA C330018D20 gene protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2688 chr4 126810621 126810821 + -1.77750 NA intron (NM_001035526, intron 3 of 23) ORR1A3|LTR|ERVL-MaLR 56951 NM_001355196 100317 Mm.206206 NM_133886 ENSMUSG00000028830 AU040320 A730047D20Rik|AAVR|Kiaa0319l expressed sequence AU040320 protein-coding 0.015000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1167 chr14 86102039 86102239 + -1.77750 NA Intergenic Intergenic -143831 NR_040457 75155 Mm.399239 NR_040457 ENSMUSG00000115271 4930529K09Rik 4930507G21Rik RIKEN cDNA 4930529K09 gene ncRNA 0.005000 0.268657 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1747 chr18 43725337 43725537 + -1.77859 NA Intergenic Lx8|LINE|L1 11800 NM_009258 20730 Mm.272 NM_009258 ENSMUSG00000024503 Spink1 Spink3|p12 serine peptidase inhibitor, Kazal type 1 protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3429 chr8 105919510 105919710 + -1.78113 NA intron (NM_173432, intron 2 of 2) intron (NM_173432, intron 2 of 2) 14252 NM_023182 109660 Mm.2745 NM_023182 ENSMUSG00000031896 Ctrl 0910001G08Rik|1810004D15Rik|AV005227|Ctra-1|Ctra1|chymopasin|mFLJ00366 chymotrypsin-like protein-coding 0.010000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1884 chr19 36698299 36698499 + -1.78113 NA Intergenic Intergenic -8920 NR_033510 668215 Mm.394223 NR_033510 ENSMUSG00000087579 Hectd2os 1500017E21Rik Hectd2, opposite strand ncRNA 0.010000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2631 chr4 87455998 87456198 + -1.78113 NA Intergenic Lx7|LINE|L1 -225558 NM_172426 76376 Mm.490487 NM_172426 ENSMUSG00000037996 Slc24a2 2810021B17Rik|6330417K15Rik|AI847460|Nckx2 solute carrier family 24 (sodium/potassium/calcium exchanger), member 2 protein-coding 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2791 chr5 61586032 61586232 + -1.78113 NA Intergenic RLTR17B_Mm|LTR|ERVK -222711 NM_019468 14380 Mm.347430 NM_019468 ENSMUSG00000089992 G6pd2 G6pdx-ps1|Gpd-2|Gpd2 glucose-6-phosphate dehydrogenase 2 protein-coding 0.000000 0.338308 81(ATATGCAAAAATATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1042 chr13 114496386 114496586 + -1.78801 NA Intergenic Intergenic -37535 NM_001301375 14313 Mm.4913 NM_008046 ENSMUSG00000021765 Fst AL033346|FS follistatin protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1942 chr2 10453702 10453902 + -1.78801 NA intron (NM_177386, intron 9 of 22) intron (NM_177386, intron 9 of 22) -12861 NR_130333 100526481 NR_130333 ENSMUSG00000092793 Mir466m mmu-mir-466m microRNA 466m ncRNA 0.010000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3371 chr8 73571114 73571314 + -1.79322 NA Intergenic RLTR13D4|LTR|ERVK -217674 NM_010687 16795 Mm.324371 NM_010687 ENSMUSG00000004383 Large1 BPFD#36|Gyltl1a|Large|Mbp-1|Mbp1|enr|fg|froggy|myd LARGE xylosyl- and glucuronyltransferase 1 protein-coding 0.005000 0.407960 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-350 chr3 20218889 20219089 + -1.79719 NA intron (NM_007753, intron 10 of 10) MER58B|DNA|hAT-Charlie 3370 NR_105974 102465609 NR_105974 ENSMUSG00000099105 Mir7007 Gm27897|mmu-mir-7007 microRNA 7007 ncRNA 0.000000 0.343284 84(ACATTGTAATTGTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1606 chr17 44560114 44560314 + -1.79892 NA intron (NR_073425, intron 5 of 5) intron (NR_073425, intron 5 of 5) 175962 NM_001271631 12393 Mm.391013 NM_009820 ENSMUSG00000039153 Runx2 AML3|Cbf|Cbfa-1|Cbfa1|LS3|Osf2|PEBP2aA|Pebp2a1|Pebpa2a runt related transcription factor 2 protein-coding 0.030000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2023 chr2 60913227 60913427 + -1.79892 NA intron (NM_020296, intron 1 of 13) intron (NM_020296, intron 1 of 13) -31889 NM_001141931 56878 Mm.259667 NM_020296 ENSMUSG00000026970 Rbms1 2600014B10Rik|AI255215|MSSP-1|MSSP-2|MSSP-3|YC1 RNA binding motif, single stranded interacting protein 1 protein-coding 0.010000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1194 chr14 99587724 99587924 + -1.79892 NA Intergenic Intergenic 289133 NM_009769 12224 Mm.30262 NM_009769 ENSMUSG00000005148 Klf5 4930520J07Rik|Bteb2|CKLF|IKLF Kruppel-like factor 5 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3475 chr9 5741192 5741392 + -1.79892 NA Intergenic Intergenic 395816 NM_009808 12364 Mm.42163 NM_009808 ENSMUSG00000025887 Casp12 - caspase 12 protein-coding 0.000000 0.303483 -44(TTTTTCTCTTTCATAT,+,0.00),48(CATATGTTATGTTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-837 chr12 85813104 85813304 + -1.79892 NA 3' UTR (NM_145447, exon 10 of 10) 3' UTR (NM_145447, exon 10 of 10) 11689 NM_001360451 58520 Mm.143795 NM_021446 ENSMUSG00000021252 Erg28 0610007P14Rik|1190004E09Rik|AU019315|C77855|ORF11 ergosterol biosynthesis 28 protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2584 chr4 54704984 54705184 + -1.79892 NA Intergenic Intergenic -242861 NM_172867 242466 Mm.102904 NM_172867 ENSMUSG00000060206 Zfp462 6030417H05|9430078C22Rik|Gt4-2|Zfpip|Znf462 zinc finger protein 462 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1669 chr18 3574697 3574897 + -1.79892 NA Intergenic Intergenic 66840 NM_026505 68010 Mm.284863 NM_026505 ENSMUSG00000024232 Bambi 2610003H06Rik BMP and activin membrane-bound inhibitor protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1197 chr14 102863393 102863593 + -1.79910 NA Intergenic ORR1D1|LTR|ERVL-MaLR 119139 NR_039592 100628599 NR_039592 ENSMUSG00000092901 Mir5130 mir-5130|mmu-mir-5130|mu-mir-5130 microRNA 5130 ncRNA 0.005000 0.393035 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-319 chr2 67472355 67472555 + -1.79954 NA intron (NM_001024618, intron 1 of 8) intron (NM_001024618, intron 1 of 8) 26453 NM_001083919 241431 Mm.261043 NM_001024618 ENSMUSG00000027022 Xirp2 2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2 xin actin-binding repeat containing 2 protein-coding 0.010000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-748 chr12 26232135 26232335 + -1.80167 NA intron (NR_046278, intron 2 of 2) intron (NR_046278, intron 2 of 2) 20310 NR_136895 102631696 Mm.118143 NR_136895 ENSMUSG00000113813 Gm29968 - predicted gene, 29968 ncRNA 0.015000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1725 chr18 33336909 33337109 + -1.80167 NA Intergenic Intergenic -123147 NM_001347624 170459 Mm.127058 NM_133774 ENSMUSG00000024378 Stard4 4632419C16Rik|9030213J02Rik StAR-related lipid transfer (START) domain containing 4 protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1220 chr14 117892137 117892337 + -1.80167 NA intron (NM_011821, intron 6 of 8) intron (NM_011821, intron 6 of 8) 61610 NR_105747 102465148 NR_105747 ENSMUSG00000098648 Mir6239 Gm28025|mmu-mir-6239 microRNA 6239 ncRNA 0.010000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-412 chr10 51388892 51389092 + -1.80167 NA Intergenic MERVL_2A-int|LTR|ERVL -91620 NM_001291892 14727 Mm.439661 NM_008147 ENSMUSG00000112023 Lilr4b Gp49a|gp49 leukocyte immunoglobulin-like receptor, subfamily B, member 4B protein-coding 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3727 chrX 96855201 96855401 + -1.80445 NA Intergenic L1_Mus3|LINE|L1 141833 NM_029536 76206 Mm.256065 NM_029536 ENSMUSG00000031210 Gpr165 6530406P05Rik G protein-coupled receptor 165 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1657 chr17 83385142 83385342 + -1.80445 NA intron (NM_001114361, intron 1 of 23) B4A|SINE|B4 34311 NM_001114362 78798 Mm.295565 NM_199466 ENSMUSG00000032624 Eml4 4930443C24Rik|AI644019 echinoderm microtubule associated protein like 4 protein-coding 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3320 chr8 38095938 38096138 + -1.80445 NA intron (NM_145841, intron 1 of 7) (CA)n|Simple_repeat|Simple_repeat 156164 NR_029884 723860 NR_029884 ENSMUSG00000065457 Mir383 Mirn383|mir-383|mmu-mir-383 microRNA 383 ncRNA 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2005 chr2 51118909 51119109 + -1.80445 NA Intergenic Intergenic 30102 NM_028810 74194 Mm.46497 NM_028810 ENSMUSG00000017144 Rnd3 2610017M01Rik|AI661404|Arhe|Rhoe Rho family GTPase 3 protein-coding 0.015000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3142 chr7 74971893 74972093 + -1.80667 NA Intergenic Intergenic -58218 NR_131122 75205 Mm.399304 NR_131122 ENSMUSG00000108803 4930533N22Rik Gm44904 RIKEN cDNA 4930533N22 gene ncRNA 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1965 chr2 22706532 22706732 + -1.80667 NA Intergenic Intergenic 52349 NR_039548 100628608 NR_039548 ENSMUSG00000106199 Mir3967 mmu-mir-3967|mu-mir-3967 microRNA 3967 ncRNA 0.005000 0.477612 -36(ATTTACCTCACAAACA,-,0.00),72(ATTTGCAAAACACAAG,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-318 chr2 65453656 65453856 + -1.81160 NA Intergenic MTD-int|LTR|ERVL-MaLR -89356 NR_105755 102466151 NR_105755 ENSMUSG00000099184 Mir6337 Gm27877|mmu-mir-6337 microRNA 6337 ncRNA 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1377 chr15 90999583 90999783 + -1.81361 NA intron (NM_001109041, intron 1 of 35) intron (NM_001109041, intron 1 of 35) 50268 NM_016705 16564 Mm.41379 NM_016705 ENSMUSG00000022629 Kif21a - kinesin family member 21A protein-coding 0.000000 0.363184 -48(CATACATATACATA,+,0.00),-48(CATACATATACATA,-,0.00) -43(ATATACATAACTAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3632 chr9 102972150 102972350 + -1.82568 NA Intergenic Intergenic -36237 NR_157194 24059 Mm.207106 NM_033314 ENSMUSG00000032548 Slco2a1 2310021C19Rik|Pgt|Slc21a2 solute carrier organic anion transporter family, member 2a1 protein-coding 0.020000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2272 chr3 56500373 56500573 + -1.82658 NA Intergenic L1MA4|LINE|L1 -316772 NM_030595 26422 Mm.384353 NM_030595 ENSMUSG00000027799 Nbea Lyst2|mKIAA1544 neurobeachin protein-coding 0.005000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1753 chr18 47124312 47124512 + -1.82658 NA Intergenic Lx9|LINE|L1 165536 NM_178377 69456 Mm.210734 NM_178377 ENSMUSG00000042705 Commd10 2310003A05Rik|AU019438|DRWMS2|Tg(Vav1-icre)A2Kio|Vav-cre|Vav-iCre|Vav1-Cre|VavCre COMM domain containing 10 protein-coding 0.005000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3598 chr9 87627118 87627318 + -1.82658 NA Intergenic Intergenic 104042 NM_023814 76365 Mm.158789 NM_023814 ENSMUSG00000032419 Tbx18 2810012F10Rik|2810404D13Rik T-box18 protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-201 chr1 113109843 113110043 + -1.82658 NA Intergenic Intergenic -693025 NR_157044 102635484 NR_157044 Gm32810 Gm18406 predicted gene, 32810 ncRNA 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1491 chr16 60835378 60835578 + -1.82801 NA Intergenic RLTR12A|LTR|ERVK -229947 NM_007938 13840 Mm.455790 NM_007938 ENSMUSG00000055540 Epha6 Ehk2|Hek12|m-ehk2 Eph receptor A6 protein-coding 0.005000 0.388060 -38(ATTTGAATAACACAGT,-,0.00),71(ATATAAAAGACCAAGA,-,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-50 chr10 31917650 31917850 + -1.82841 NA intron (NM_001013411, intron 4 of 6) intron (NM_001013411, intron 4 of 6) -308025 NM_001146349 268291 Mm.295212 NM_001146349 ENSMUSG00000063760 Rnf217 AU016819|Ibrdc1 ring finger protein 217 protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1614 chr17 54300483 54300683 + -1.82849 NA Intergenic Intergenic -1549 NM_022025 63993 Mm.155241 NM_022025 ENSMUSG00000023945 Slc5a7 CHT1 solute carrier family 5 (choline transporter), member 7 protein-coding 0.010000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1086 chr14 25015379 25015579 + -1.82849 NA Intergenic Intergenic -93782 NR_153781 102634576 Mm.317855 NR_153781 Gm32123 - predicted gene, 32123 ncRNA 0.025000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1367 chr15 84657772 84657972 + -1.82849 NA Intergenic Intergenic -5334 NM_001346662 109270 Mm.291372 NM_146061 ENSMUSG00000036106 Prr5 AU043908|Arhgap8|C030017C09Rik|C78947|Protor-1|Protor1 proline rich 5 (renal) protein-coding 0.010000 0.562189 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2317 chr3 76015439 76015639 + -1.82849 NA Intergenic Intergenic -58590 NM_175193 73124 Mm.249232 NM_175193 ENSMUSG00000034109 Golim4 3110027H23Rik|GIMPC|GPP130|Golph4|P138 golgi integral membrane protein 4 protein-coding 0.005000 0.368159 -34(ATATTGTGTTGCAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3496 chr9 23269154 23269354 + -1.82849 NA intron (NM_028472, intron 3 of 14) intron (NM_028472, intron 3 of 14) 46178 NM_028472 73230 Mm.335020 NM_028472 ENSMUSG00000031963 Bmper 3110056H04Rik|CV-2|Crim3|Cv2 BMP-binding endothelial regulator protein-coding 0.005000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3443 chr8 113248265 113248465 + -1.82849 NA Intergenic B1F|SINE|Alu 181103 NR_033584 791378 Mm.350576 NR_033584 ENSMUSG00000110541 Gm10280 - predicted gene 10280 ncRNA 0.010000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1514 chr16 72251741 72251941 + -1.82849 NA Intergenic Intergenic -17514 NR_131115 319533 Mm.373754 NR_131115 ENSMUSG00000116769 8030451O07Rik - RIKEN cDNA 8030451O07 gene ncRNA 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-995 chr13 84618789 84618989 + -1.82849 NA Intergenic Intergenic 396593 NR_155262 72745 Mm.295063 NM_175187 ENSMUSG00000035762 Tmem161b 2810446P07Rik|AI843389 transmembrane protein 161B protein-coding 0.010000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2876 chr5 119530182 119530382 + -1.82849 NA Intergenic Intergenic 50076 NR_045702 100993 Mm.381453 NR_045702 ENSMUSG00000087516 AW549542 - expressed sequence AW549542 ncRNA 0.010000 0.417910 80(ACATTGTTTTGCAGAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1209 chr14 112622541 112622741 + -1.82849 NA Intergenic Lx10|LINE|L1 947526 NM_198865 75409 Mm.235097 NM_029273 ENSMUSG00000033214 Slitrk5 2610019D03Rik SLIT and NTRK-like family, member 5 protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-115 chr1 69429398 69429598 + -1.83432 NA Intergenic Intergenic 256462 NM_011770 22779 Mm.106343 NM_011770 ENSMUSG00000025997 Ikzf2 A730095J18Rik|Helios|Zfpn1a2|Znfn1a2 IKAROS family zinc finger 2 protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1953 chr2 18756137 18756337 + -1.83923 NA intron (NR_126079, intron 1 of 4) MER91B|DNA|hAT-Tip100 4625 NR_126079 100041479 Mm.393659 NR_126079 ENSMUSG00000092353 Gm3363 - predicted gene 3363 ncRNA 0.010000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2754 chr5 31770461 31770661 + -1.83923 NA intron (NM_181279, intron 5 of 13) intron (NM_181279, intron 5 of 13) 72511 NM_181281 107976 Mm.482126 NM_144541 ENSMUSG00000052139 Babam2 6030405P19Rik|AI429776|B830038C02Rik|Bre BRISC and BRCA1 A complex member 2 protein-coding 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2081 chr2 107701087 107701287 + -1.83923 NA Intergenic (TG)n|Simple_repeat|Simple_repeat 410598 NM_021275 16492 Mm.142718 NM_021275 ENSMUSG00000042604 Kcna4 Kv1.4 potassium voltage-gated channel, shaker-related subfamily, member 4 protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2567 chr4 48132032 48132232 + -1.83923 NA intron (NM_026343, intron 2 of 7) intron (NM_026343, intron 2 of 7) 7213 NM_026343 67727 Mm.171334 NM_026343 ENSMUSG00000061455 Stx17 4833418L03Rik|6330411F21Rik|9030425C21Rik|AW048351 syntaxin 17 protein-coding 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-380 chr10 31987781 31987981 + -1.83923 NA intron (NM_001013411, intron 3 of 6) intron (NM_001013411, intron 3 of 6) -378156 NM_001146349 268291 Mm.295212 NM_001146349 ENSMUSG00000063760 Rnf217 AU016819|Ibrdc1 ring finger protein 217 protein-coding 0.000000 0.368159 64(CCTTTGTGATGCACAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3742 chrX 136147180 136147380 + -1.83923 NA Intergenic Intergenic 8284 NM_212457 406217 Mm.336245 NM_212457 ENSMUSG00000047844 Bex4 - brain expressed X-linked 4 protein-coding 0.015000 0.363184 -25(ATTTCCAAGTGAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2029 chr2 63680267 63680467 + -1.83923 NA Intergenic Intergenic -105079 NR_152174 667257 Mm.417007 NR_152174 Gm8541 EG667257 predicted gene 8541 ncRNA 0.005000 0.308458 -24(ATTTGCATCACATTAT,-,0.00),69(ATAAGAATGACAATCA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3055 chr6 113224646 113224846 + -1.83923 NA Intergenic Intergenic -13097 NM_001362182 97287 Mm.197816 NM_026849 ENSMUSG00000030269 Mtmr14 1110061O04Rik|AW553738|C76151 myotubularin related protein 14 protein-coding 0.000000 0.353234 -29(ATTTAAATAATAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1411 chr16 8164370 8164570 + -1.83923 NA Intergenic Intergenic 260666 NM_029070 74720 Mm.159318 NM_029070 ENSMUSG00000022715 Tmem114 4930511J11Rik|Cldn26 transmembrane protein 114 protein-coding 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1389 chr15 93864185 93864385 + -1.83923 NA Intergenic L1ME2z|LINE|L1 62826 NR_045737 77248 Mm.410768 NR_045737 ENSMUSG00000116360 9430014N10Rik - RIKEN cDNA 9430014N10 gene ncRNA 0.010000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2256 chr3 48097371 48097571 + -1.83923 NA Intergenic L1_Mus2|LINE|L1 -70712 NR_040408 666202 Mm.465057 NR_040408 ENSMUSG00000103257 Gm7977 EG666202 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, theta polypeptide pseudogene pseudo 0.000000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3196 chr7 107986247 107986447 + -1.84620 NA Intergenic Intergenic -4020 NM_146926 258928 Mm.377751 NM_146926 ENSMUSG00000096151 Olfr477 MOR204-1 olfactory receptor 477 protein-coding 0.005000 0.343284 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-157 chr13 114496426 114496626 + -1.84709 NA Intergenic Intergenic -37575 NM_001301375 14313 Mm.4913 NM_008046 ENSMUSG00000021765 Fst AL033346|FS follistatin protein-coding 0.005000 0.482587 49(CCTTGGTCTTGCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1477 chr16 54748596 54748796 + -1.84709 NA Intergenic L1_Rod|LINE|L1 534541 NM_178720 239852 Mm.245045 NM_178720 ENSMUSG00000064310 Zpld1 9430016A21Rik zona pellucida like domain containing 1 protein-coding 0.005000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-249 chr1 147423672 147423872 + -1.84713 NA Intergenic Lx4A|LINE|L1 926085 NM_001145807 215378 Mm.441817 NM_153539 ENSMUSG00000035131 Brinp3 B830045N13Rik|Fam5c bone morphogenetic protein/retinoic acid inducible neural specific 3 protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1008 chr13 92147143 92147343 + -1.84713 NA Intergenic RLTR13D4|LTR|ERVK -15415 NM_009027 19418 Mm.248630 NM_009027 ENSMUSG00000021708 Rasgrf2 6330417G04Rik|AW048350|Grf2|Ras-GRF2 RAS protein-specific guanine nucleotide-releasing factor 2 protein-coding 0.005000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1758 chr18 49029713 49029913 + -1.84713 NA Intergenic Intergenic -493476 NR_033785 67321 Mm.245802 NR_033785 ENSMUSG00000100297 1700044K03Rik - RIKEN cDNA 1700044K03 gene ncRNA 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2692 chr4 128607824 128608024 + -1.84894 NA intron (NM_177758, intron 1 of 7) intron (NM_177758, intron 1 of 7) 2174 NM_177758 269585 Mm.153291 NM_177758 ENSMUSG00000061894 Zscan20 C130001F22|Zfp31|Zkscan20 zinc finger and SCAN domains 20 protein-coding 0.015000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-379 chr10 31917889 31918089 + -1.85131 NA intron (NM_001013411, intron 4 of 6) intron (NM_001013411, intron 4 of 6) -308264 NM_001146349 268291 Mm.295212 NM_001146349 ENSMUSG00000063760 Rnf217 AU016819|Ibrdc1 ring finger protein 217 protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1271 chr15 23092742 23092942 + -1.85131 NA intron (NM_001081299, intron 1 of 11) intron (NM_001081299, intron 1 of 11) 56379 NM_001081299 320865 Mm.241965 NM_001081299 ENSMUSG00000040420 Cdh18 B230220E17Rik|Cdh14l|Tg(GFAP-APOE_i4)1Hol cadherin 18 protein-coding 0.005000 0.378109 -48(TTCTCCATGAGAATAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3099 chr7 28635407 28635607 + -1.85173 NA Intergenic L1ME3A|LINE|L1 -4594 NM_175319 101744 Mm.26022 NM_175319 ENSMUSG00000037469 Acp7 AU017076|C330005M16Rik|Papl acid phosphatase 7, tartrate resistant protein-coding 0.000000 0.437811 -7(GCATTGTCAGGCAATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2020 chr2 58711854 58712054 + -1.85173 NA intron (NM_001289660, intron 1 of 7) intron (NM_001289660, intron 1 of 7) -43230 NM_029692 76654 Mm.200370 NM_029692 ENSMUSG00000026839 Upp2 1700124F02Rik|AI266885|UDRPASE2|UP2|UPASE2 uridine phosphorylase 2 protein-coding 0.015000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-39 chr1 30420138 30420338 + -1.85173 NA Intergenic Intergenic -281402 NR_157037 102633704 NR_157037 Gm31465 - predicted gene, 31465 ncRNA 0.005000 0.427861 -6(ATTTGAATAGCAAGAG,-,0.00),-1(AATAGCAAGAGAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1502 chr16 66166570 66166770 + -1.85173 NA Intergenic ORR1F|LTR|ERVL-MaLR 351481 NM_001368760 73569 Mm.25670 NM_028572 ENSMUSG00000091243 Vgll3 1700110N18Rik|4832416J22|C80713|Vgl-3|Vito-2 vestigial like family member 3 protein-coding 0.000000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2030 chr2 65453676 65453876 + -1.85935 NA Intergenic MTD-int|LTR|ERVL-MaLR -89376 NR_105755 102466151 NR_105755 ENSMUSG00000099184 Mir6337 Gm27877|mmu-mir-6337 microRNA 6337 ncRNA 0.015000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-645 chr11 64900715 64900915 + -1.86195 NA Intergenic Intergenic -78220 NM_023479 68626 Mm.157711 NM_023479 ENSMUSG00000020549 Elac2 1110017O07Rik|D11Wsu80e|Hpc2 elaC ribonuclease Z 2 protein-coding 0.010000 0.373134 45(CTTTTATCATATAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-383 chr10 32696874 32697074 + -1.86448 NA intron (NM_001013411, intron 1 of 6) intron (NM_001013411, intron 1 of 6) 192941 NM_001025286 432450 Mm.49665 NM_001013411 ENSMUSG00000069670 Nkain2 6330571D19Rik|AW455467|Tcba1 Na+/K+ transporting ATPase interacting 2 protein-coding 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2780 chr5 51671317 51671517 + -1.86448 NA Intergenic RMER1B|Other|Other -103692 NR_132764 19017 Mm.259072 NM_008904 ENSMUSG00000029167 Ppargc1a A830037N07Rik|Gm11133|PGC-1|PPARGC-1-alpha|Pgc-1alpha|Pgc1|Pgco1|Ppargc1 peroxisome proliferative activated receptor, gamma, coactivator 1 alpha protein-coding 0.020000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-98 chr1 62325409 62325609 + -1.86457 NA intron (NM_001081050, intron 16 of 22) intron (NM_001081050, intron 16 of 22) -189400 NR_151537 105243940 NR_151537 Pard3bos2 Gm12747 par-3 family cell polarity regulator beta, opposite strand 2 ncRNA 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2330 chr3 80787589 80787789 + -1.86457 NA intron (NR_152148, intron 2 of 17) intron (NR_152148, intron 2 of 17) 15146 NR_152148 14800 Mm.220224 NM_013540 ENSMUSG00000033981 Gria2 GluA2|GluR-B|Glur-2|Glur2|gluR-K2 glutamate receptor, ionotropic, AMPA2 (alpha 2) protein-coding 0.005000 0.348259 -28(ATATGCAAAACCAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-788 chr12 48543146 48543346 + -1.86457 NA Intergenic L1_Mus3|LINE|L1 -839637 NM_001160112 15228 Mm.4704 NM_008241 ENSMUSG00000020950 Foxg1 2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1 forkhead box G1 protein-coding 0.000000 0.487562 0(CCTTAGTCTTGCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-585 chr11 28389877 28390077 + -1.86457 NA intron (NM_001166661, intron 3 of 3) intron (NM_001166661, intron 3 of 3) 194347 NM_001166661 216613 Mm.93759 NM_181577 ENSMUSG00000032878 Ccdc85a - coiled-coil domain containing 85A protein-coding 0.005000 0.363184 -51(ATTTCCAAGACAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-962 chr13 53592769 53592969 + -1.86457 NA Intergenic Intergenic 46332 NR_131079 77398 Mm.174307 NR_131079 ENSMUSG00000113599 9530014B07Rik - RIKEN cDNA 9530014B07 gene ncRNA 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2307 chr3 70163056 70163256 + -1.86457 NA Intergenic Intergenic 155543 NM_001018031 229389 Mm.331071 NM_001018031 ENSMUSG00000027788 Otol1 Gm414 otolin 1 protein-coding 0.015000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2100 chr2 115568303 115568503 + -1.86457 NA Intergenic ORR1A1|LTR|ERVL-MaLR -13313 NM_001145898 399568 Mm.134929 NM_207264 ENSMUSG00000040282 BC052040 - cDNA sequence BC052040 protein-coding 0.000000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-617 chr11 51103062 51103262 + -1.86457 NA Intergenic L1_Mur3|LINE|L1 18075 NR_045865 619293 Mm.387061 NM_001033798 ENSMUSG00000072982 9230009I02Rik - RIKEN cDNA 9230009I02 gene ncRNA 0.015000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2727 chr5 13460445 13460645 + -1.86457 NA intron (NM_001243072, intron 4 of 17) intron (NM_001243072, intron 4 of 17) 61236 NM_009152 20346 Mm.372039 NM_009152 ENSMUSG00000028883 Sema3a Hsema-I|SEMA1|SemD|Semad|coll-1 sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3A protein-coding 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1974 chr2 33075115 33075315 + -1.86457 NA intron (NM_001355200, intron 3 of 29) intron (NM_001355200, intron 3 of 29) 11242 NM_001355202 99326 Mm.41290 NM_178888 ENSMUSG00000038860 Garnl3 AW120551 GTPase activating RANGAP domain-like 3 protein-coding 0.005000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1307 chr15 47824785 47824985 + -1.86457 NA intron (NM_001081391, intron 31 of 70) intron (NM_001081391, intron 31 of 70) 967104 NM_001081391 239420 Mm.309363 NM_001081391 ENSMUSG00000022311 Csmd3 4930500N14Rik|mKIAA1894 CUB and Sushi multiple domains 3 protein-coding 0.000000 0.338308 7(GTATGAATGAAAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2401 chr3 118090586 118090786 + -1.86457 NA Intergenic Intergenic -221750 NM_029655 76561 Mm.33824 NM_029655 ENSMUSG00000028007 Snx7 2510028H01Rik sorting nexin 7 protein-coding 0.010000 0.378109 -39(ATACACTCATGTAAAT,+,0.00),-25(ATTAAAAAAAAAAAAC,-,0.00),46(CTTTGAATAAGAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3515 chr9 33543844 33544044 + -1.86457 NA Intergenic Intergenic -498427 NR_040744 77119 Mm.367930 NR_040744 ENSMUSG00000098758 7630403G23Rik TH-cre|Tg(Th-cre)1Tmd RIKEN cDNA 7630403G23 gene ncRNA 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-95 chr1 61741859 61742059 + -1.86457 NA intron (NM_001081050, intron 1 of 22) intron (NM_001081050, intron 1 of 22) 103135 NM_001081050 72823 Mm.35153 NM_001081050 ENSMUSG00000052062 Pard3b 1810008K04Rik|2010002N16Rik|2810455B10Rik|Als2cr19|PAR3B|PAR3L|PAR3beta par-3 family cell polarity regulator beta protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2031 chr2 67472412 67472612 + -1.86506 NA intron (NM_001024618, intron 1 of 8) intron (NM_001024618, intron 1 of 8) 26510 NM_001083919 241431 Mm.261043 NM_001024618 ENSMUSG00000027022 Xirp2 2310003D02Rik|2310008C07Rik|A530024P18Rik|AI452089|Cmya3|Gm352|Xin2 xin actin-binding repeat containing 2 protein-coding 0.010000 0.353234 85(ATTTCAAAAGCAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1904 chr19 45882148 45882348 + -1.87066 NA intron (NM_198296, intron 23 of 25) intron (NM_198296, intron 23 of 25) -66185 NM_145703 80906 Mm.213204 NM_030716 ENSMUSG00000025221 Kcnip2 KChIP2 Kv channel-interacting protein 2 protein-coding 0.010000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1113 chr14 56010843 56011043 + -1.87066 NA non-coding (NR_002889, exon 1 of 1) non-coding (NR_002889, exon 1 of 1) 537 NR_002889 545056 Mm.266575 NR_002889 Gm5801 EG545056 ubiquitin-conjugating enzyme E2, J2 homolog pseudogene pseudo 0.025000 0.482587 -91(ACTTTATCTTTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1800 chr18 75197150 75197350 + -1.87419 NA intron (NM_027727, intron 13 of 16) intron (NM_027727, intron 13 of 16) 100067 NR_045394 100503117 Mm.250517 NR_045393 ENSMUSG00000102047 2010010A06Rik 5033420E22Rik RIKEN cDNA 2010010A06 gene ncRNA 0.005000 0.293532 47(AAATTGATATTCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2476 chr3 144981466 144981666 + -1.87419 NA Intergenic Intergenic -6521 NM_207208 99663 Mm.442050 NM_207208 ENSMUSG00000068547 Clca4a 9130020L07Rik|AI504701|Clca4|Clca6 chloride channel accessory 4A protein-coding 0.005000 0.318408 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-487 chr6 137270421 137270621 + -1.87431 NA intron (NM_001164401, intron 1 of 25) intron (NM_001164401, intron 1 of 25) 18222 NM_001164401 19277 Mm.186361 NM_011216 ENSMUSG00000030223 Ptpro D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O protein tyrosine phosphatase, receptor type, O protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3679 chrX 17565873 17566073 + -1.87939 NA intron (NM_001313746, intron 3 of 4) intron (NM_001313746, intron 3 of 4) 6034 NM_001313746 72018 Mm.41558 NM_028058 ENSMUSG00000025040 Fundc1 1500005J14Rik|1810033P05Rik FUN14 domain containing 1 protein-coding 0.000000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2927 chr6 14345300 14345500 + -1.88423 NA Intergenic Intergenic 409874 NM_080464 140491 Mm.209429 NM_080464 ENSMUSG00000042717 Ppp1r3a GM|RG1|RGL protein phosphatase 1, regulatory subunit 3A protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3345 chr8 53721428 53721628 + -1.88423 NA Intergenic L1_Mus2|LINE|L1 -82463 NM_146208 234258 Mm.281749 NM_146208 ENSMUSG00000039396 Neil3 AI449477|BC034753|C85903 nei like 3 (E. coli) protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3605 chr9 90953428 90953628 + -1.88423 NA Intergenic Intergenic 412271 NM_009573 22771 Mm.335350 NM_009573 ENSMUSG00000032368 Zic1 ZIC|ZNF201 zinc finger protein of the cerebellum 1 protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1002 chr13 89639352 89639552 + -1.88423 NA Intergenic Intergenic 98816 NM_013500 12950 Mm.266790 NM_013500 ENSMUSG00000021613 Hapln1 BB099155|CLP|Crtl1|Crtl1l|LP|LP-1 hyaluronan and proteoglycan link protein 1 protein-coding 0.000000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3567 chr9 73934685 73934885 + -1.88651 NA intron (NM_001081153, intron 1 of 31) intron (NM_001081153, intron 1 of 31) 34252 NM_001081153 208898 Mm.41035 NM_001081153 ENSMUSG00000062151 Unc13c 1500037O19Rik|D9Ertd414e|Munc13-3|Unc13h3 unc-13 homolog C protein-coding 0.005000 0.378109 33(ATTTTATCATTGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2610 chr4 74293433 74293633 + -1.88651 NA intron (NM_001356561, intron 3 of 20) intron (NM_001356561, intron 3 of 20) 41654 NM_001356561 76804 Mm.209059 NM_144787 ENSMUSG00000028397 Kdm4c 2410141F18Rik|AA517467|Gasc1|Jmjd2c lysine (K)-specific demethylase 4C protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2200 chr2 171893612 171893812 + -1.89976 NA Intergenic Intergenic 69087 NR_040509 75655 Mm.396203 NR_040509 ENSMUSG00000086823 1700028P15Rik - RIKEN cDNA 1700028P15 gene ncRNA 0.000000 0.447761 -98(ACTTTTTCATTTAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1161 chr14 78191476 78191676 + -1.89976 NA promoter-TSS (NR_035499) promoter-TSS (NR_035499) -98 NR_035499 100316715 NR_035499 ENSMUSG00000087932 Mir1971 mmu-mir-1971 microRNA 1971 ncRNA 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-403 chr10 45352226 45352426 + -1.89976 NA intron (NM_024285, intron 5 of 7) Lx5c|LINE|L1 16591 NM_024285 23828 Mm.332793 NM_024285 ENSMUSG00000071317 Bves Pop1|Popdc1|mBVES blood vessel epicardial substance protein-coding 0.015000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2709 chr4 153805953 153806153 + -1.89976 NA Intergenic Intergenic 144423 NR_040670 407793 Mm.260950 NR_040670 BC039966 - cDNA sequence BC039966 ncRNA 0.015000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3591 chr9 83797720 83797920 + -1.89976 NA intron (NM_148941, intron 1 of 5) intron (NM_148941, intron 1 of 5) 8485 NM_148941 83603 Mm.83949 NM_148941 ENSMUSG00000032262 Elovl4 - elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 4 protein-coding 0.040000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3018 chr6 88178039 88178239 + -1.89976 NA Intergenic L1MD|LINE|L1 -15752 NM_001355253 14461 Mm.491156 NM_008090 ENSMUSG00000015053 Gata2 Gata-2 GATA binding protein 2 protein-coding 0.020000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-433 chr10 61201892 61202092 + -1.89976 NA intron (NM_001081127, intron 19 of 21) intron (NM_001081127, intron 19 of 21) 26730 NM_001017409 65971 Mm.30227 NM_023064 ENSMUSG00000020096 Tbata 1700021K02Rik|AI428928|Spatial|Titest thymus, brain and testes associated protein-coding 0.020000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2636 chr4 89979804 89980004 + -1.90006 NA Intergenic Lx5|LINE|L1 -238916 NM_153102 236537 Mm.214642 NM_153102 ENSMUSG00000070902 Zfp352 2czf48 zinc finger protein 352 protein-coding 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1168 chr14 86102296 86102496 + -1.90006 NA Intergenic L1_Mus2|LINE|L1 -143574 NR_040457 75155 Mm.399239 NR_040457 ENSMUSG00000115271 4930529K09Rik 4930507G21Rik RIKEN cDNA 4930529K09 gene ncRNA 0.010000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1915 chr19 52523024 52523224 + -1.90006 NA Intergenic Lx|LINE|L1 258827 NM_008386 16333 Mm.46269 NM_008386 ENSMUSG00000035804 Ins1 Ins-1|Ins2-rs1 insulin I protein-coding 0.000000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-384 chr10 32925097 32925297 + -1.90006 NA Intergenic RLTR22_Mur|LTR|ERVK -35282 NM_001013411 432450 Mm.49665 NM_001013411 ENSMUSG00000069670 Nkain2 6330571D19Rik|AW455467|Tcba1 Na+/K+ transporting ATPase interacting 2 protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2021 chr2 59642977 59643177 + -1.90016 NA intron (NM_198294, intron 1 of 26) intron (NM_198294, intron 1 of 26) -3692 NM_001290659 66860 Mm.27917 NM_198294 ENSMUSG00000035168 Tanc1 1200003E16Rik|Tanc|mKIAA1728 tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 1 protein-coding 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1854 chr19 21155373 21155573 + -1.90016 NA Intergenic Intergenic 50763 NR_126458 75354 Mm.243873 NR_126458 ENSMUSG00000118047 4930554I06Rik - RIKEN cDNA 4930554I06 gene ncRNA 0.005000 0.358209 -79(CATGTATATGTATG,+,0.00),-79(CATGTATATGTATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3082 chr6 137270366 137270566 + -1.90554 NA intron (NM_001164401, intron 1 of 25) intron (NM_001164401, intron 1 of 25) 18167 NM_001164401 19277 Mm.186361 NM_011216 ENSMUSG00000030223 Ptpro D28|GLEPP1|PTPBK|PTPROt|PTPU2|PTPoc|PTPphi|Ptpn15|R-PTP-O protein tyrosine phosphatase, receptor type, O protein-coding 0.010000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1911 chr19 51833599 51833799 + -1.90554 NA Intergenic Intergenic -430598 NM_008386 16333 Mm.46269 NM_008386 ENSMUSG00000035804 Ins1 Ins-1|Ins2-rs1 insulin I protein-coding 0.010000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1231 chr14 123095223 123095423 + -1.91185 NA Intergenic Intergenic -73180 NR_045145 380934 Mm.393838 NR_045143 ENSMUSG00000115016 AA536875 Gm1591 expressed sequence AA536875 ncRNA 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2155 chr2 144941470 144941670 + -1.91185 NA Intergenic Intergenic 117904 NM_025490 66328 Mm.45377 NM_025490 ENSMUSG00000027431 Scp2d1 1700010M22Rik SCP2 sterol-binding domain containing 1 protein-coding 0.010000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-816 chr12 68688584 68688784 + -1.91185 NA Intergenic Intergenic 470502 NM_009093 20090 Mm.379006 NM_009093 ENSMUSG00000034892 Rps29 - ribosomal protein S29 protein-coding 0.000000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1114 chr14 56011038 56011238 + -1.91347 NA non-coding (NR_002889, exon 1 of 1) non-coding (NR_002889, exon 1 of 1) 342 NR_002889 545056 Mm.266575 NR_002889 Gm5801 EG545056 ubiquitin-conjugating enzyme E2, J2 homolog pseudogene pseudo 0.010000 0.422886 -69(GGGTTATCATGTAAAT,+,0.00),-14(TTTTCCATGATAATAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-20 chr1 15131465 15131665 + -1.91347 NA Intergenic Intergenic -155360 NM_001098528 98741 Mm.156081 NM_001033195 ENSMUSG00000092083 Kcnb2 9630047L19Rik|BB130875|Kv2.2 potassium voltage gated channel, Shab-related subfamily, member 2 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1763 chr18 51602328 51602528 + -1.91347 NA Intergenic Intergenic 484530 NM_001081224 71373 Mm.63546 NM_001081224 ENSMUSG00000073565 Prr16 5430406M13Rik|AI607429 proline rich 16 protein-coding 0.015000 0.348259 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-336 chr2 142038708 142038908 + -1.91417 NA intron (NM_001013802, intron 8 of 18) intron (NM_001013802, intron 8 of 18) 862656 NM_001355123 16558 Mm.251934 NM_001081133 ENSMUSG00000038844 Kif16b 8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590 kinesin family member 16B protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2477 chr3 144981686 144981886 + -1.91417 NA Intergenic MIR|SINE|MIR -6741 NM_207208 99663 Mm.442050 NM_207208 ENSMUSG00000068547 Clca4a 9130020L07Rik|AI504701|Clca4|Clca6 chloride channel accessory 4A protein-coding 0.020000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3110 chr7 49816744 49816944 + -1.91498 NA intron (NM_133740, intron 10 of 15) intron (NM_133740, intron 10 of 15) 38486 NM_133740 71974 Mm.33202 NM_133740 ENSMUSG00000030505 Prmt3 2010005E20Rik|2410018A17Rik|AL033309|Hrmt1l3 protein arginine N-methyltransferase 3 protein-coding 0.000000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-423 chr10 56598303 56598503 + -1.91498 NA Intergenic Intergenic 166422 NR_152769 102640560 Mm.417249 NR_152768 Gm36595 - predicted gene, 36595 ncRNA 0.015000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2775 chr5 49237892 49238092 + -1.91498 NA intron (NM_001199244, intron 1 of 7) intron (NM_001199244, intron 1 of 7) 47667 NM_001199244 80334 Mm.160172 NM_030265 ENSMUSG00000029088 Kcnip4 AV032399|Calp|Calp250|KChIP4|KChIP4a Kv channel interacting protein 4 protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2490 chr3 150719769 150719969 + -1.91498 NA Intergenic Intergenic 303993 NR_039540 100628568 NR_039540 ENSMUSG00000092830 Mir3963 mmu-mir-3963|mu-mir-3963 microRNA 3963 ncRNA 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2418 chr3 123613859 123614059 + -1.91498 NA intron (NM_031186, intron 3 of 12) intron (NM_031186, intron 3 of 12) 5491 NM_001293682 83398 Mm.443908 NM_031186 ENSMUSG00000027977 Ndst3 4921531K01Rik|4930511P15Rik|N-HSST 3|NDST-3 N-deacetylase/N-sulfotransferase (heparan glucosaminyl) 3 protein-coding 0.030000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3340 chr8 47787755 47787955 + -1.91498 NA Intergenic Intergenic 30362 NR_151456 105243184 Mm.297069 NR_151456 ENSMUSG00000110464 1700061N14Rik Gm45862 RIKEN cDNA 1700061N14 gene ncRNA 0.025000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1476 chr16 52062123 52062323 + -1.91498 NA intron (NM_001033238, intron 3 of 17) intron (NM_001033238, intron 3 of 17) 30674 NM_001033238 208650 Mm.328206 NM_001033238 ENSMUSG00000022637 Cblb AI429560|AI851073|Cbl-b Casitas B-lineage lymphoma b protein-coding 0.020000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2993 chr6 71775332 71775532 + -1.91498 NA intron (NM_178608, intron 4 of 6) L1M2|LINE|L1 48352 NM_025430 66223 Mm.28579 NM_025430 ENSMUSG00000052962 Mrpl35 1110066C01Rik mitochondrial ribosomal protein L35 protein-coding 0.005000 0.358209 0(GATTCATATTCATG,+,0.00),0(GATTCATATTCATG,-,0.00) 34(ATCAACATGATAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3263 chr8 3435321 3435521 + -1.91498 NA intron (NM_133962, intron 6 of 19) ID_B1|SINE|B4 32227 NM_028594 69129 Mm.45279 NM_026951 ENSMUSG00000069633 Pex11g 1810022F11Rik|1810049N02Rik|Pex11c|Pex11gamma peroxisomal biogenesis factor 11 gamma protein-coding 0.010000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3599 chr9 87719217 87719417 + -1.91498 NA intron (NM_023814, intron 4 of 7) intron (NM_023814, intron 4 of 7) 11943 NM_023814 76365 Mm.158789 NM_023814 ENSMUSG00000032419 Tbx18 2810012F10Rik|2810404D13Rik T-box18 protein-coding 0.000000 0.343284 12(TTTTTGTCATTAAATT,+,0.00),25(ATTTTTTCATTTACAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2999 chr6 74234447 74234647 + -1.91498 NA Intergenic Lx8|LINE|L1 -625874 NR_157242 102634075 Mm.78553 NR_157242 ENSMUSG00000107441 Gm31747 - predicted gene, 31747 ncRNA 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1399 chr15 99914908 99915108 + -1.91498 NA Intergenic Intergenic 16650 NM_028180 72277 Mm.61024 NM_028180 ENSMUSG00000045350 Fam186a 1700030F18Rik|Gm920 family with sequence similarity 186, member A protein-coding 0.030000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1832 chr19 10619026 10619226 + -1.91498 NA intron (NM_015735, intron 11 of 26) intron (NM_015735, intron 11 of 26) 13529 NM_015735 13194 Mm.289915 NM_015735 ENSMUSG00000024740 Ddb1 127kDa|AA408517|p127-Ddb1 damage specific DNA binding protein 1 protein-coding 0.025000 0.532338 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-578 chr11 25189293 25189493 + -1.91498 NA Intergenic Intergenic -136714 NR_045853 71234 Mm.158627 NR_045853 ENSMUSG00000033015 4933427E13Rik - RIKEN cDNA 4933427E13 gene ncRNA 0.010000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1445 chr16 31189442 31189642 + -1.91498 NA intron (NM_030138, intron 1 of 22) intron (NM_030138, intron 1 of 22) 11696 NM_030138 78618 Mm.274646 NM_030138 ENSMUSG00000049076 Acap2 4832442G16|9530039J15Rik|CNT-B2|Centb2|mKIAA0041 ArfGAP with coiled-coil, ankyrin repeat and PH domains 2 protein-coding 0.015000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2939 chr6 22668606 22668806 + -1.91498 NA Intergenic Intergenic -206796 NM_001311064 19283 Mm.41639 NM_011219 ENSMUSG00000068748 Ptprz1 AI850339|DSD-1-PG|PTPbeta|PTPzeta|Ptprz|Ptpz|R-PTP-zeta|RPTPz|Rptpbeta protein tyrosine phosphatase, receptor type Z, polypeptide 1 protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2306 chr3 69283222 69283422 + -1.91498 NA Intergenic Intergenic -33596 NM_178726 242083 Mm.40577 NM_178726 ENSMUSG00000027784 Ppm1l 3222401G13|5930404J21Rik|AI481720|AW045850|PP2C|PP2Cepsilon|Pp2ce|Ppp2ce|mKIAA4175 protein phosphatase 1 (formerly 2C)-like protein-coding 0.015000 0.407960 -38(TATGCAAATGCATC,+,0.00),-38(TATGCAAATGCATC,-,0.00) -61(ATTTACAAGCCAATTA,-,0.00),-45(CTTATATTATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2264 chr3 52359015 52359215 + -1.91498 NA Intergenic MLTR11A|LTR|ERVK 90778 NM_019739 56458 Mm.29891 NM_019739 ENSMUSG00000044167 Foxo1 AI876417|Afxh|FKHR|Fkhr1|Foxo1a forkhead box O1 protein-coding 0.020000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-487 chr10 98007734 98007934 + -1.91635 NA Intergenic Lx9|LINE|L1 -40744 NR_033537 100038699 Mm.467933 NR_033537 ENSMUSG00000074776 Gm10754 - predicted gene 10754 ncRNA 0.010000 0.412935 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-75 chr10 98007792 98007992 + -1.92453 NA Intergenic Lx9|LINE|L1 -40802 NR_033537 100038699 Mm.467933 NR_033537 ENSMUSG00000074776 Gm10754 - predicted gene 10754 ncRNA 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1289 chr15 33480209 33480409 + -1.92487 NA intron (NM_176073, intron 6 of 7) intron (NM_176073, intron 6 of 7) -74370 NR_033608 73486 Mm.483393 NM_028551 ENSMUSG00000058101 1700084J12Rik - ribosomal protein L7-like 1 pseudogene pseudo 0.005000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-583 chr11 27223211 27223411 + -1.92487 NA Intergenic Intergenic 438203 NR_002890 654472 Mm.347777 NR_002890 Gm12070 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3624 chr9 98589992 98590192 + -1.92742 NA exon (NM_025485, exon 7 of 8) exon (NM_025485, exon 7 of 8) 11587 NM_025485 64655 Mm.17949 NM_025485 ENSMUSG00000032459 Mrps22 3100002P07Rik|Rpms22 mitochondrial ribosomal protein S22 protein-coding 0.005000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1916 chr19 53054162 53054362 + -1.92742 NA Intergenic Lx7|LINE|L1 -15608 NM_133216 170750 Mm.99776 NM_133216 ENSMUSG00000025027 Xpnpep1 D230045I08Rik|sAMP X-prolyl aminopeptidase (aminopeptidase P) 1, soluble protein-coding 0.000000 0.313433 33(ATCTAAATAATAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2184 chr2 161869695 161869895 + -1.92742 NA intron (NM_001291151, intron 9 of 30) L1MEd|LINE|L1 -521018 NR_040617 77645 Mm.447752 NR_040617 ENSMUSG00000084919 Ptprtos C330008G21Rik protein tyrosine phosphatase, receptor type T, opposite strand ncRNA 0.005000 0.298507 60(TTTAACATGATAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-702 chr11 107159074 107159274 + -1.92742 NA intron (NM_001308498, intron 1 of 2) intron (NM_001308498, intron 1 of 2) 1766 NM_001308498 105734734 NM_001308498 Gm11715 - predicted gene 11715 protein-coding 0.000000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1238 chr15 6359600 6359800 + -1.92742 NA intron (NM_001008702, intron 1 of 13) intron (NM_001008702, intron 1 of 13) -27048 NM_001102400 13132 Mm.240830 NM_023118 ENSMUSG00000022150 Dab2 5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96 disabled 2, mitogen-responsive phosphoprotein protein-coding 0.005000 0.273632 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3760 chrX 151320509 151320709 + -1.93150 NA TTS (NM_001271679) TTS (NM_001271679) 21270 NR_015600 331547 Mm.101344 NR_015600 ENSMUSG00000084771 A230072E10Rik C130073P14|Gm15139 RIKEN cDNA A230072E10 gene ncRNA 0.010000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-907 chr13 17624930 17625130 + -1.93793 NA intron (NM_138654, intron 6 of 13) intron (NM_138654, intron 6 of 13) 69735 NM_138654 192136 Mm.364180 NM_138654 ENSMUSG00000055137 Sugct 5033411D12Rik|D17907 succinyl-CoA glutarate-CoA transferase protein-coding 0.005000 0.308458 -40(ATTTTCATGACAAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3498 chr9 23856630 23856830 + -1.93793 NA Intergenic Intergenic -241288 NM_175678 319239 Mm.130824 NM_175678 ENSMUSG00000043659 Npsr1 9330128H10Rik|GPRA|Gpr154|MVTR|PGR14|VRR1 neuropeptide S receptor 1 protein-coding 0.000000 0.368159 -43(AATGTATATGAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3572 chr9 77481188 77481388 + -1.93793 NA intron (NM_172528, intron 2 of 13) intron (NM_172528, intron 2 of 13) 62771 NM_172528 214345 Mm.28534 NM_172528 ENSMUSG00000032352 Lrrc1 A430093J20Rik|AU016091|D030059I21|mKIAA4018 leucine rich repeat containing 1 protein-coding 0.020000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-37 chr1 30234190 30234390 + -1.93793 NA Intergenic L1_Mur3|LINE|L1 -95454 NR_157037 102633704 NR_157037 Gm31465 - predicted gene, 31465 ncRNA 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1488 chr16 58991249 58991449 + -1.93793 NA Intergenic ERVL-B4-int|LTR|ERVL -4055 NM_146485 258478 Mm.271400 NM_146485 ENSMUSG00000062105 Olfr183 MOR183-2 olfactory receptor 183 protein-coding 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2156 chr2 144941634 144941834 + -1.94361 NA Intergenic Intergenic 118068 NM_025490 66328 Mm.45377 NM_025490 ENSMUSG00000027431 Scp2d1 1700010M22Rik SCP2 sterol-binding domain containing 1 protein-coding 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-820 chr12 70657619 70657819 + -1.94704 NA intron (NR_037248, intron 4 of 4) intron (NR_037248, intron 4 of 4) -167795 NM_028127 319710 Mm.2962 NM_028127 ENSMUSG00000048285 Frmd6 2610019M19Rik|4930488L10Rik|AW212977|Willin FERM domain containing 6 protein-coding 0.010000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1484 chr16 56892988 56893188 + -1.94704 NA Intergenic Intergenic -6925 NM_019631 56277 Mm.262328 NM_019631 ENSMUSG00000022754 Tmem45a C630002M10Rik|M32486|p19.5 transmembrane protein 45a protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1795 chr18 70707513 70707713 + -1.94704 NA Intergenic L1_Mur3|LINE|L1 139321 NM_001311071 17191 Mm.322 NM_010773 ENSMUSG00000024513 Mbd2 MBD2a methyl-CpG binding domain protein 2 protein-coding 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-100 chr1 62655770 62655970 + -1.94704 NA Intergenic Intergenic -47447 NM_001077405 18187 Mm.266341 NM_010939 ENSMUSG00000025969 Nrp2 1110048P06Rik|Np-2|Np2|Npn-2|Npn2 neuropilin 2 protein-coding 0.005000 0.363184 -14(ATTTGAATAACAAAAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-538 chr10 125866779 125866979 + -1.94704 NA Intergenic Intergenic -99340 NM_177152 320398 Mm.275586 NM_177152 ENSMUSG00000020105 Lrig3 9030421L11Rik|9130004I02Rik|9430095K15Rik|mKIAA3016 leucine-rich repeats and immunoglobulin-like domains 3 protein-coding 0.000000 0.273632 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2251 chr3 44968296 44968496 + -1.94704 NA Intergenic Intergenic 409864 NR_045172 72511 Mm.140700 NR_045172 ENSMUSG00000097040 2610316D01Rik - RIKEN cDNA 2610316D01 gene ncRNA 0.005000 0.363184 -32(GAATTCTCATTCAATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1426 chr16 21295930 21296130 + -1.94743 NA intron (NR_046162, intron 1 of 4) intron (NR_046162, intron 1 of 4) 842 NR_046162 328646 Mm.404748 NR_046162 ENSMUSG00000096918 Gm16863 A830060N17 predicted gene, 16863 ncRNA 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3483 chr9 9742794 9742994 + -1.95437 NA intron (NM_001033359, intron 14 of 20) intron (NM_001033359, intron 14 of 20) -151537 NR_105745 102466147 NR_105745 ENSMUSG00000098408 Mir6237 Gm27411|mmu-mir-6237 microRNA 6237 ncRNA 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2677 chr4 118267391 118267591 + -1.95508 NA intron (NM_011213, intron 5 of 32) L1ME4a|LINE|L1 23906 NM_011213 19268 Mm.29855 NM_011213 ENSMUSG00000033295 Ptprf AA591035|LAR|LARS|RPTP-LAR protein tyrosine phosphatase, receptor type, F protein-coding 0.000000 0.343284 57(CTTTTTTTTTTTTAAT,+,0.00),63(TTTTTTTAATGGTAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2790 chr5 59942005 59942205 + -1.95508 NA Intergenic Intergenic 43897 NR_040683 71057 Mm.50817 NR_040682 ENSMUSG00000106013 4933402J10Rik - RIKEN cDNA 4933402J10 gene ncRNA 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2066 chr2 97889213 97889413 + -1.95508 NA Intergenic Intergenic 421656 NM_178725 241568 Mm.241682 NM_178725 ENSMUSG00000050587 Lrrc4c 6430556C10Rik|NGL-1 leucine rich repeat containing 4C protein-coding 0.005000 0.373134 23(GTTTTGTCATTCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2000 chr2 49545373 49545573 + -1.95508 NA intron (NM_172663, intron 10 of 13) intron (NM_172663, intron 10 of 13) -73813 NM_008449 16574 Mm.256342 NM_008449 ENSMUSG00000026764 Kif5c KINN|Khc|NKHC|NKHC2 kinesin family member 5C protein-coding 0.010000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-245 chr1 144600886 144601086 + -1.95508 NA Intergenic Intergenic -33319 NR_110891 624910 Mm.389199 NM_001290269 ENSMUSG00000098509 Rgs21 EG624910 regulator of G-protein signalling 21 protein-coding 0.000000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2065 chr2 97889142 97889342 + -1.95508 NA Intergenic Intergenic 421585 NM_178725 241568 Mm.241682 NM_178725 ENSMUSG00000050587 Lrrc4c 6430556C10Rik|NGL-1 leucine rich repeat containing 4C protein-coding 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3538 chr9 49570779 49570979 + -1.95508 NA intron (NM_001081445, intron 1 of 17) intron (NM_001081445, intron 1 of 17) 52591 NR_029465 100036537 Mm.437541 NR_029465 ENSMUSG00000079564 Gm11149 - predicted gene 11149 ncRNA 0.000000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1853 chr19 21155205 21155405 + -1.95508 NA Intergenic MER44D|DNA|TcMar-Tigger 50595 NR_126458 75354 Mm.243873 NR_126458 ENSMUSG00000118047 4930554I06Rik - RIKEN cDNA 4930554I06 gene ncRNA 0.015000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-982 chr13 76190228 76190428 + -1.96226 NA Intergenic Intergenic 81616 NM_001370926 238726 Mm.71912 NM_001370926 ENSMUSG00000109228 Fam81b Gm276 family with sequence similarity 81, member B protein-coding 0.005000 0.417910 -27(ATTTACATAACATGGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2554 chr4 36990491 36990691 + -1.96226 NA Intergenic Intergenic 37625 NR_151511 100042132 Mm.126874 NR_151511 Gm12371 - predicted gene 12371 ncRNA 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-189 chr1 109514512 109514712 + -1.96226 NA Intergenic Intergenic -468288 NM_001316743 241201 Mm.213407 NM_172853 ENSMUSG00000026312 Cdh7 9330156F07Rik|CDH7L1 cadherin 7, type 2 protein-coding 0.005000 0.378109 81(ATTTGAAAACAAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1169 chr14 86175920 86176120 + -1.96876 NA Intergenic Intergenic -69950 NR_040457 75155 Mm.399239 NR_040457 ENSMUSG00000115271 4930529K09Rik 4930507G21Rik RIKEN cDNA 4930529K09 gene ncRNA 0.000000 0.348259 -81(CTTTTCTTATTGACAT,+,0.00),-60(AATAACATGACAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2068 chr2 100817797 100817997 + -1.97106 NA Intergenic Intergenic 803149 NM_001362687 68170 Mm.31263 NM_026592 ENSMUSG00000027165 B230118H07Rik NWC RIKEN cDNA B230118H07 gene protein-coding 0.005000 0.303483 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-250 chr1 147638467 147638667 + -1.97470 NA Intergenic MLTR25A|LTR|ERVK 1140880 NM_001145807 215378 Mm.441817 NM_153539 ENSMUSG00000035131 Brinp3 B830045N13Rik|Fam5c bone morphogenetic protein/retinoic acid inducible neural specific 3 protein-coding 0.000000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1716 chr18 31258592 31258792 + -1.97470 NA intron (NM_009065, intron 1 of 4) intron (NM_009065, intron 1 of 4) 58436 NM_009065 19762 Mm.5163 NM_009065 ENSMUSG00000057455 Rit2 RIBA|Rin|Roc2 Ras-like without CAAX 2 protein-coding 0.005000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1764 chr18 52082294 52082494 + -1.98016 NA Intergenic Intergenic 41152 NR_029788 723830 NR_029788 ENSMUSG00000065494 Mir28a Mir28|Mirn28|mmu-mir-28|mmu-mir-28a microRNA 28a ncRNA 0.005000 0.398010 -73(ATTAACATAAGACAGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-116 chr1 69429659 69429859 + -1.98521 NA Intergenic Intergenic 256201 NM_011770 22779 Mm.106343 NM_011770 ENSMUSG00000025997 Ikzf2 A730095J18Rik|Helios|Zfpn1a2|Znfn1a2 IKAROS family zinc finger 2 protein-coding 0.015000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2332 chr3 82090565 82090765 + -1.98521 NA Intergenic Intergenic 15644 NR_105977 102466991 NR_105977 ENSMUSG00000098712 Mir7010 Gm28029|mmu-mir-7010 microRNA 7010 ncRNA 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3202 chr7 110787435 110787635 + -1.98704 NA intron (NM_001276301, intron 2 of 14) intron (NM_001276301, intron 2 of 14) 14931 NM_009667 11717 Mm.3238 NM_009667 ENSMUSG00000005686 Ampd3 - adenosine monophosphate deaminase 3 protein-coding 0.015000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-157 chr1 89500003 89500203 + -1.98704 NA intron (NM_001037136, intron 1 of 16) intron (NM_001037136, intron 1 of 16) 45292 NM_178119 347722 Mm.291135 NM_178119 ENSMUSG00000055013 Agap1 Centg2|Ggap1|R75364|mKIAA1099 ArfGAP with GTPase domain, ankyrin repeat and PH domain 1 protein-coding 0.025000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3686 chrX 22999605 22999805 + -1.98704 NA Intergenic Intergenic 267097 NM_001310466 67455 Mm.224306 NM_026167 ENSMUSG00000036782 Klhl13 1200009K10Rik|AI451128|Bklhd2|D130072F20Rik kelch-like 13 protein-coding 0.005000 0.318408 36(GTATGAATAACAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1446 chr16 31910892 31911092 + -1.98704 NA Intergenic (TG)n|Simple_repeat|Simple_repeat -22859 NM_172822 239827 Mm.440388 NM_172822 ENSMUSG00000045625 Pigz F630022B06Rik phosphatidylinositol glycan anchor biosynthesis, class Z protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-524 chr10 117471526 117471726 + -1.98704 NA Intergenic Intergenic -24191 NR_152734 102634600 Mm.399106 NR_152734 ENSMUSG00000112344 Gm32141 - predicted gene, 32141 ncRNA 0.010000 0.368159 17(GTTTTGTTTTTGAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-532 chr10 122724793 122724993 + -1.98704 NA intron (NM_176919, intron 1 of 8) Kanga1|DNA|TcMar-Tc2 45578 NR_106182 102466884 NR_106182 ENSMUSG00000099225 Mir8104 Gm27380|mmu-mir-8104 microRNA 8104 ncRNA 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-10 chr1 10144477 10144677 + -1.98704 NA intron (NM_001102430, intron 34 of 37) L2|LINE|L2 88093 NM_001102430 211673 Mm.229141 NM_001102430 ENSMUSG00000067851 Arfgef1 ARFGEP1|BIG1|D130059B05Rik|D730028O18Rik|P200 ADP-ribosylation factor guanine nucleotide-exchange factor 1(brefeldin A-inhibited) protein-coding 0.030000 0.547264 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3253 chr7 137091434 137091634 + -1.98704 NA intron (NM_008598, intron 3 of 4) intron (NM_008598, intron 3 of 4) -143149 NR_045885 100038555 Mm.444788 NR_045885 ENSMUSG00000109722 Gm10578 - predicted gene 10578 ncRNA 0.010000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1395 chr15 98541191 98541391 + -1.98704 NA non-coding (NR_160872, exon 8 of 8) non-coding (NR_160872, exon 8 of 8) -7022 NR_153345 69612 Mm.229107 NM_133714 ENSMUSG00000022992 Kansl2 2310037I24Rik|B930009D17 KAT8 regulatory NSL complex subunit 2 protein-coding 0.020000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1325 chr15 54115511 54115711 + -1.98704 NA Intergenic MIRb|SINE|MIR 162873 NM_008764 18383 Mm.15383 NM_008764 ENSMUSG00000063727 Tnfrsf11b OCIF|Opg|TR1 tumor necrosis factor receptor superfamily, member 11b (osteoprotegerin) protein-coding 0.010000 0.333333 -15(ATGATCATGACAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2043 chr2 75714654 75714854 + -1.98704 NA Intergenic Intergenic -10091 NR_132727 18024 Mm.1025 NM_010902 ENSMUSG00000015839 Nfe2l2 Nrf2 nuclear factor, erythroid derived 2, like 2 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3465 chr8 126337200 126337400 + -1.98704 NA intron (NM_175434, intron 2 of 6) B4|SINE|B4 38721 NM_175434 210027 Mm.405238 NM_175434 ENSMUSG00000057060 Slc35f3 B230375D17Rik solute carrier family 35, member F3 protein-coding 0.005000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3225 chr7 124480985 124481185 + -1.98771 NA Intergenic MTB_Mm-int|LTR|ERVL-MaLR 227850 NR_045907 73076 Mm.417827 NR_045907 ENSMUSG00000086254 3100003L05Rik - RIKEN cDNA 3100003L05 gene ncRNA 0.000000 0.273632 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2575 chr4 51475276 51475476 + -1.98771 NA Intergenic Intergenic 258698 NM_001162865 74914 Mm.159368 NM_001162865 ENSMUSG00000039555 Cylc2 4930488P18Rik cylicin, basic protein of sperm head cytoskeleton 2 protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1504 chr16 66643003 66643203 + -1.98771 NA Intergenic Intergenic -14015 NR_040512 75501 Mm.394300 NR_040512 ENSMUSG00000092599 1700010K23Rik - RIKEN cDNA 1700010K23 gene ncRNA 0.000000 0.233831 34(TCTGAATATGTATG,+,0.00),34(TCTGAATATGTATG,-,0.00) -62(GTATTGTCATTTAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3732 chrX 107177222 107177422 + -1.98771 NA Intergenic Intergenic 27707 NM_175442 213438 Mm.265244 NM_175442 ENSMUSG00000054293 P2ry10b A630033H20Rik|AI662791|P2ry10 purinergic receptor P2Y, G-protein coupled 10B protein-coding 0.000000 0.293532 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-261 chr1 155071237 155071437 + -1.98771 NA intron (NR_151545, intron 3 of 6) intron (NR_151545, intron 3 of 6) 11927 NR_151545 671336 Mm.393476 NR_151545 ENSMUSG00000096950 Gm9530 - predicted gene 9530 ncRNA 0.010000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2205 chr3 3351461 3351661 + -1.98771 NA Intergenic L1_Mus3|LINE|L1 -156469 NM_013920 30942 Mm.330897 NM_013920 ENSMUSG00000017688 Hnf4g NR2A2 hepatocyte nuclear factor 4, gamma protein-coding 0.000000 0.437811 -31(ATATTAAAAACAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1226 chr14 120895767 120895967 + -1.98771 NA Intergenic Intergenic -15327 NM_023579 70572 Mm.221452 NM_023579 ENSMUSG00000030662 Ipo5 1110011C18Rik|5730478E03Rik|AA409333|C76941|IMB3|Kpnb3|Ranbp5|imp5 importin 5 protein-coding 0.020000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2073 chr2 105214656 105214856 + -1.98771 NA Intergenic Intergenic -9586 NM_001159638 74088 Mm.46188 NM_028747 ENSMUSG00000055312 Them7 0610012H03Rik thioesterase superfamily member 7 protein-coding 0.020000 0.402985 69(ATTTGCATACCAGAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1690 chr18 16165610 16165810 + -1.98771 NA Intergenic Intergenic -405553 NM_001364992 71367 Mm.329304 NM_199055 ENSMUSG00000047161 Chst9 5430438D01Rik|GalNAc4ST-2|galNAc-4-ST2 carbohydrate (N-acetylgalactosamine 4-0) sulfotransferase 9 protein-coding 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1432 chr16 24575291 24575491 + -1.98929 NA intron (NM_178665, intron 4 of 12) intron (NM_178665, intron 4 of 12) 46077 NR_038091 624582 Mm.439775 NR_038091 Morf4l1-ps1 A730098P11Rik mortality factor 4 like 1, pseudogene 1 pseudo 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2607 chr4 71800026 71800226 + -1.98929 NA Intergenic Tigger7|DNA|TcMar-Tigger 400767 NM_001285532 21885 Mm.278444 NM_011599 ENSMUSG00000008305 Tle1 C230057C06Rik|Estm14|Grg-1|Grg1|Tle4l transducin-like enhancer of split 1 protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-778 chr12 43370970 43371170 + -1.98929 NA Intergenic L1MCb|LINE|L1 -336853 NR_148724 102636207 NR_148724 Gm33340 Gm40882 predicted gene, 33340 ncRNA 0.005000 0.427861 -81(CATGAAAATGCATG,+,0.00),-81(CATGAAAATGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-168 chr1 98351441 98351641 + -1.98929 NA Intergenic Intergenic -69583 NM_027584 70866 Mm.389164 NM_027584 ENSMUSG00000026336 Slco6d1 4921511I05Rik solute carrier organic anion transporter family, member 6d1 protein-coding 0.010000 0.462687 -77(ATTTGCATATCAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1410 chr16 7382262 7382462 + -1.98929 NA intron (NM_001359725, intron 15 of 16) intron (NM_001359725, intron 15 of 16) 312527 NM_183188 268859 Mm.370334 NM_021477 ENSMUSG00000008658 Rbfox1 A2bp|A2bp1|Hrnbp1|fox-1 RNA binding protein, fox-1 homolog (C. elegans) 1 protein-coding 0.005000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2511 chr4 8289286 8289486 + -1.98976 NA Intergenic Intergenic -50345 NM_007592 12319 Mm.119320 NM_007592 ENSMUSG00000041261 Car8 AW546993|Ca8|Cals|Cals1|Carp|wdl carbonic anhydrase 8 protein-coding 0.005000 0.383085 -63(GTATAAATGAGAATAA,-,0.00),-22(CTTTCCATGACAACAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2420 chr3 124129060 124129260 + -1.98976 NA Intergenic Zaphod|DNA|hAT-Tip100 -191877 NM_146140 229801 Mm.165810 NM_146140 ENSMUSG00000044528 Tram1l1 A830091N21Rik translocation associated membrane protein 1-like 1 protein-coding 0.000000 0.323383 -45(TATTTGTCAAGTTAAT,+,0.00),-17(TCTTTCCTTTGTAAAC,+,0.00),18(TCTTTGTAATACAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-847 chr12 94293461 94293661 + -1.98976 NA Intergenic Intergenic 366223 NR_106201 102466888 NR_106201 ENSMUSG00000098931 Mir8099-2 Gm27692|mmu-mir-8099-2 microRNA 8099-2 ncRNA 0.025000 0.373134 67(TATGAATAATGCATA,+,0.00),67(TATGAATAATGCATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3613 chr9 94483466 94483666 + -1.98976 NA Intergenic Intergenic 54515 NM_001033145 68861 Mm.258746 NM_001033145 ENSMUSG00000045414 Dipk2a 1190002N15Rik|GoPro49|HASF divergent protein kinase domain 2A protein-coding 0.000000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3354 chr8 59351571 59351771 + -1.98976 NA Intergenic Intergenic 439916 NM_173411 234290 Mm.39244 NM_173411 ENSMUSG00000049946 BC030500 - cDNA sequence BC030500 protein-coding 0.005000 0.278607 23(ATTTACATAAAAATAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-69 chr1 47850821 47851021 + -1.99249 NA Intergenic Intergenic -383796 NR_105768 102466969 NR_105768 ENSMUSG00000098876 Mir6350 Gm27958|mmu-mir-6350 microRNA 6350 ncRNA 0.000000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3702 chrX 56812499 56812699 + -1.99249 NA intron (NM_177293, intron 6 of 15) RSINE1|SINE|B4 9726 NM_177293 320923 Mm.186745 NM_177293 ENSMUSG00000067878 Map7d3 4933424A10Rik|Mtap7d3 MAP7 domain containing 3 protein-coding 0.005000 0.457711 19(CATGCATATGTACA,+,0.00) ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-278 chr18 50864530 50864730 + -1.99432 NA Intergenic Intergenic -253268 NM_001081224 71373 Mm.63546 NM_001081224 ENSMUSG00000073565 Prr16 5430406M13Rik|AI607429 proline rich 16 protein-coding 0.005000 0.253731 26(CATGATTATGCATT,+,0.00),26(CATGATTATGCATT,-,0.00) -87(ATTACAATAATAATAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3061 chr6 117381887 117382087 + -1.99554 NA Intergenic Intergenic -113248 NR_152214 100126203 Mm.217172 NR_152214 6820426E19Rik Gm43983 RIKEN cDNA 6820426E19 gene ncRNA 0.015000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-187 chr1 108302340 108302540 + -1.99846 NA Intergenic L1_Mus2|LINE|L1 385181 NR_102307 319596 Mm.136054 NR_102306 ENSMUSG00000100457 D830032E09Rik - RIKEN cDNA D830032E09 gene ncRNA 0.000000 0.333333 ESKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-532 chr8 82140183 82140383 + -1.99916 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat 262303 NM_001254747 16168 Mm.4392 NM_008357 ENSMUSG00000031712 Il15 AI503618|IL-15 interleukin 15 protein-coding 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3391 chr8 82140198 82140398 + -1.99916 NA Intergenic (TAA)n|Simple_repeat|Simple_repeat 262288 NM_001254747 16168 Mm.4392 NM_008357 ENSMUSG00000031712 Il15 AI503618|IL-15 interleukin 15 protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-22 chr1 19301862 19302062 + -2.00195 NA Intergenic L1_Mus3|LINE|L1 89908 NM_001025305 21419 Mm.137021 NM_009334 ENSMUSG00000025927 Tfap2b AI606113|AP-2(beta)|E130018K07Rik|Tcfap2b transcription factor AP-2 beta protein-coding 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-188 chr1 108302632 108302832 + -2.01722 NA Intergenic L1_Mus2|LINE|L1 385473 NR_102307 319596 Mm.136054 NR_102306 ENSMUSG00000100457 D830032E09Rik - RIKEN cDNA D830032E09 gene ncRNA 0.010000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-385 chr10 32925238 32925438 + -2.03432 NA Intergenic RLTR22_Mur|LTR|ERVK -35423 NM_001013411 432450 Mm.49665 NM_001013411 ENSMUSG00000069670 Nkain2 6330571D19Rik|AW455467|Tcba1 Na+/K+ transporting ATPase interacting 2 protein-coding 0.005000 0.363184 46(CTTACATATGCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2074 chr2 105408504 105408704 + -2.03441 NA Intergenic Intergenic -9285 NM_009037 19672 Mm.4876 NM_009037 ENSMUSG00000005973 Rcn1 Rcn reticulocalbin 1 protein-coding 0.020000 0.442786 -18(CCATTGGCATGCAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3006 chr6 79056606 79056806 + -2.03441 NA Intergenic Intergenic 24664 NR_040302 100504701 Mm.400420 NR_040301 ENSMUSG00000108072 Gm20362 - predicted gene, 20362 ncRNA 0.000000 0.278607 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-121 chr1 71117430 71117630 + -2.03441 NA Intergenic MTE2b|LTR|ERVL-MaLR -14558 NM_007525 12021 Mm.10764 NM_007525 ENSMUSG00000026196 Bard1 - BRCA1 associated RING domain 1 protein-coding 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3761 chrX 151320949 151321149 + -2.03492 NA TTS (NM_001271679) TTS (NM_001271679) 20830 NR_015600 331547 Mm.101344 NR_015600 ENSMUSG00000084771 A230072E10Rik C130073P14|Gm15139 RIKEN cDNA A230072E10 gene ncRNA 0.005000 0.422886 16(TATGCATATGCAAA,+,0.00),16(TATGCATATGCAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1668 chr17 94398770 94398970 + -2.03657 NA Intergenic Intergenic 351149 NM_001357137 76781 Mm.139146 NM_176917 ENSMUSG00000055660 Mettl4 2410198H06Rik|A730091E08Rik|AV296509|HsT661 methyltransferase like 4 protein-coding 0.010000 0.338308 34(TTTAAAATAAGAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3128 chr7 66981297 66981497 + -2.03657 NA intron (NM_001033877, intron 8 of 22) RCHARR1|DNA|hAT-Charlie 141662 NM_001033877 233332 Mm.445763 NM_001033877 ENSMUSG00000058145 Adamts17 AU023434 a disintegrin-like and metallopeptidase (reprolysin type) with thrombospondin type 1 motif, 17 protein-coding 0.000000 0.263682 -81(TATAAATAAATCATA,+,0.00) -3(ATTTACATAGTAATGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1166 chr14 82050139 82050339 + -2.03657 NA Intergenic Lx9|LINE|L1 2025051 NR_153783 102635012 Mm.399509 NR_153783 ENSMUSG00000115043 Gm32455 - predicted gene, 32455 ncRNA 0.000000 0.402985 30(GCATTATTTTGTAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2150 chr2 142038839 142039039 + -2.03704 NA intron (NM_001013802, intron 8 of 18) intron (NM_001013802, intron 8 of 18) 862525 NM_001355123 16558 Mm.251934 NM_001081133 ENSMUSG00000038844 Kif16b 8430434E15Rik|AA623607|AI789011|C80253|C80902|mKIAA1590 kinesin family member 16B protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-108 chr1 67554992 67555192 + -2.03982 NA Intergenic Lx|LINE|L1 432065 NM_001080809 227231 Mm.343942 NM_001080809 ENSMUSG00000025991 Cps1 4732433M03Rik|CPS|D1Ucla3 carbamoyl-phosphate synthetase 1 protein-coding 0.010000 0.402985 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2221 chr3 16944459 16944659 + -2.03982 NA Intergenic Intergenic 127465 NR_153388 102632048 Mm.417635 NR_153388 Gm30223 - predicted gene, 30223 ncRNA 0.000000 0.253731 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1015 chr13 96723023 96723223 + -2.03982 NA Intergenic L1_Rod|LINE|L1 -25170 NM_001370928 625662 NM_001370928 ENSMUSG00000109561 Ankrd31 - ankyrin repeat domain 31 protein-coding 0.010000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2537 chr4 27395733 27395933 + -2.03982 NA Intergenic Lx9|LINE|L1 -690384 NR_040656 75360 Mm.67233 NR_040656 ENSMUSG00000086257 4930548K13Rik - RIKEN cDNA 4930548K13 gene ncRNA 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2250 chr3 43420454 43420654 + -2.03982 NA Intergenic Intergenic 1677936 NM_028667 73852 Mm.29006 NM_027271 ENSMUSG00000025766 D3Ertd751e 2810009O15Rik|4930415G15Rik DNA segment, Chr 3, ERATO Doi 751, expressed protein-coding 0.000000 0.318408 -54(TCTCTCTCTTTTAAAT,+,0.00),-33(CTTTTATTTTTCAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1603 chr17 43069155 43069355 + -2.04563 NA intron (NM_178589, intron 4 of 5) intron (NM_178589, intron 4 of 5) 52700 NM_178589 94185 Mm.200792 NM_178589 ENSMUSG00000023915 Tnfrsf21 AA959878|DR6|R74815|TR7 tumor necrosis factor receptor superfamily, member 21 protein-coding 0.010000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1544 chr16 86907672 86907872 + -2.04563 NA Intergenic Lx9|LINE|L1 -101259 NR_153789 102635020 Mm.132956 NR_153789 Gm32461 - predicted gene, 32461 ncRNA 0.000000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2178 chr2 158439899 158440099 + -2.04563 NA intron (NM_001363006, intron 10 of 30) intron (NM_001363006, intron 10 of 30) 29897 NM_001363006 228850 Mm.398185 NM_177227 ENSMUSG00000027652 Ralgapb AI507211|B230339M05Rik|p170 Ral GTPase activating protein, beta subunit (non-catalytic) protein-coding 0.005000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1816 chr18 85721301 85721501 + -2.04563 NA Intergenic Intergenic -673551 NM_144946 246317 Mm.329578 NM_144946 ENSMUSG00000050321 Neto1 AI851453|Btcl1|C130005O10Rik neuropilin (NRP) and tolloid (TLL)-like 1 protein-coding 0.005000 0.363184 -2(TATGCATATTCAGG,+,0.00),-2(TATGCATATTCAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-805 chr12 59786918 59787118 + -2.04563 NA Intergenic Intergenic -567535 NM_001033156 70611 Mm.311026 NM_001033156 ENSMUSG00000035329 Fbxo33 5730501N20Rik|AI642135 F-box protein 33 protein-coding 0.010000 0.417910 26(AGTTGCATAATAATAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-252 chr1 148825116 148825316 + -2.04563 NA Intergenic Lx9|LINE|L1 1097223 NM_001305632 18783 Mm.4186 NM_008869 ENSMUSG00000056220 Pla2g4a Pla2g4|cPLA2|cPLA2-alpha|cPLA2alpha phospholipase A2, group IVA (cytosolic, calcium-dependent) protein-coding 0.005000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2303 chr3 67876991 67877191 + -2.05574 NA Intergenic Intergenic -15129 NM_177585 208426 Mm.246568 NM_177585 ENSMUSG00000051777 Iqcj D230050A05|EG208426 IQ motif containing J protein-coding 0.020000 0.457711 29(CTGTGAAAGACAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-582 chr11 27202405 27202605 + -2.05574 NA Intergenic ERVB5_1-I_MM-int|LTR|ERVK 417397 NR_002890 654472 Mm.347777 NR_002890 Gm12070 - glyceraldehyde-3-phosphate dehydrogenase pseudogene pseudo 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1403 chr15 103436710 103436910 + -2.05574 NA Intergenic B4A|SINE|B4 -6383 NM_028797 74174 Mm.325325 NM_028797 ENSMUSG00000022487 Gtsf1 1700006H03Rik|Cue110 gametocyte specific factor 1 protein-coding 0.000000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3580 chr9 80687204 80687404 + -2.05574 NA Intergenic Intergenic -221866 NM_022016 63859 Mm.422780 NM_022016 ENSMUSG00000032343 Impg1 A930015H12Rik|IMP150|SPACR interphotoreceptor matrix proteoglycan 1 protein-coding 0.010000 0.288557 -90(CATGCATAGTAATG,-,0.00),38(TATGTATATTTATT,+,0.00) -97(GCATTGACATGCATAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2648 chr4 97173299 97173499 + -2.05574 NA Intergenic Intergenic -388239 NM_001081284 620779 Mm.439625 NM_001081284 ENSMUSG00000078639 Gm12695 - predicted gene 12695 protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2965 chr6 41616046 41616246 + -2.05574 NA exon (NM_001146351, exon 7 of 18) exon (NM_001146351, exon 7 of 18) 10664 NM_001146351 13848 Mm.271976 NM_007680 ENSMUSG00000029869 Ephb6 Cekl|Mep Eph receptor B6 protein-coding 0.045000 0.631841 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1572 chr17 9404094 9404294 + -2.06299 NA Intergenic Intergenic -236172 NR_027881 67791 Mm.158175 NR_027881 ENSMUSG00000097049 6530411M01Rik - RIKEN cDNA 6530411M01 gene ncRNA 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2426 chr3 124861384 124861584 + -2.06423 NA Intergenic L1MCa|LINE|L1 -280393 NM_001368235 384775 Mm.489851 NM_001368235 ENSMUSG00000039174 1700003H04Rik 4930538K10Rik|4933400D22Rik RIKEN cDNA 1700003H04 gene protein-coding 0.010000 0.358209 -17(TCATTGTTTTTCTAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1943 chr2 10453921 10454121 + -2.06423 NA intron (NM_177386, intron 9 of 22) intron (NM_177386, intron 9 of 22) -12642 NR_130333 100526481 NR_130333 ENSMUSG00000092793 Mir466m mmu-mir-466m microRNA 466m ncRNA 0.010000 0.383085 -5(GTTCAATTATGCATA,+,0.00) 2(TATGCATATATATG,-,0.00),48(TGTGCATATGCATG,+,0.00),48(TGTGCATATGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-463 chr10 83088909 83089109 + -2.06617 NA intron (NM_021439, intron 1 of 2) intron (NM_021439, intron 1 of 2) 103512 NM_021439 58250 Mm.360747 NM_021439 ENSMUSG00000034612 Chst11 1110020P09Rik|C4ST|C4ST-1|C4ST1|C4s carbohydrate sulfotransferase 11 protein-coding 0.005000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1381 chr15 91584114 91584314 + -2.06907 NA Intergenic Intergenic -10953 NM_001033633 239606 Mm.360596 NM_001033633 ENSMUSG00000036298 Slc2a13 6530403A04|A630029G22Rik|AI505012|Gm308 solute carrier family 2 (facilitated glucose transporter), member 13 protein-coding 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2383 chr3 110054426 110054626 + -2.06907 NA intron (NM_030699, intron 2 of 7) intron (NM_030699, intron 2 of 7) 88946 NM_133488 80883 Mm.39262 NM_030699 ENSMUSG00000059857 Ntng1 A930010C08Rik|AI853992|Lmnt1 netrin G1 protein-coding 0.000000 0.398010 -34(ATCTGCAATATAAAAC,-,0.00),55(TCTTTGTTAAGTAAAC,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2748 chr5 28357057 28357257 + -2.07328 NA intron (NM_028234, intron 7 of 18) intron (NM_028234, intron 7 of 18) 39968 NM_028234 381626 Mm.304075 NM_028234 ENSMUSG00000048271 Rbm33 3200001K10Rik|6430512A10Rik|AA386890|Prr8 RNA binding motif protein 33 protein-coding 0.015000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3396 chr8 86629461 86629661 + -2.07328 NA intron (NM_025827, intron 1 of 14) intron (NM_025827, intron 1 of 14) 5518 NM_025827 66887 Mm.324550 NM_025827 ENSMUSG00000047866 Lonp2 1300002A08Rik|AU015403|Lonp lon peptidase 2, peroxisomal protein-coding 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-238 chr1 141379431 141379631 + -2.07371 NA Intergenic Intergenic -723129 NR_040604 75910 Mm.483845 NR_040604 ENSMUSG00000102368 4930590L20Rik - RIKEN cDNA 4930590L20 gene ncRNA 0.000000 0.343284 10(ATATGCAAGACAATTG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2704 chr4 147404566 147404766 + -2.07371 NA Intergenic RLTR11B|LTR|ERVK -38448 NM_001371349 0.000000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1754 chr18 47811265 47811465 + -2.07371 NA Intergenic ORR1D1|LTR|ERVL-MaLR -21832 NR_152200 100042982 Mm.125235 NR_152200 Gm4146 Gm45939 predicted gene 4146 ncRNA 0.005000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1766 chr18 52162738 52162938 + -2.07371 NA Intergenic Intergenic -39292 NR_029788 723830 NR_029788 ENSMUSG00000065494 Mir28a Mir28|Mirn28|mmu-mir-28|mmu-mir-28a microRNA 28a ncRNA 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3040 chr6 103627376 103627576 + -2.07371 NA intron (NM_007697, intron 2 of 26) Lx5c|LINE|L1 116600 NM_007697 12661 Mm.251288 NM_007697 ENSMUSG00000030077 Chl1 A530023M13Rik|AI465420|CALL|LICAM2 cell adhesion molecule L1-like protein-coding 0.010000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-624 chr11 54549510 54549710 + -2.07371 NA intron (NM_001252496, intron 3 of 28) intron (NM_001252496, intron 3 of 28) 26765 NM_001252494 192786 Mm.254404 NM_175258 ENSMUSG00000037533 Rapgef6 A530068K01|AI844632|BB085664|C030018K18Rik|PDZ-GEF2|Pdzgef2|RA-GEF-2|Ragef2|mKIAA4052 Rap guanine nucleotide exchange factor (GEF) 6 protein-coding 0.000000 0.273632 81(ATTTTCTCATGAATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-293 chr1 176681067 176681267 + -2.07371 NA Intergenic Intergenic 91256 NR_029775 723921 NR_029775 ENSMUSG00000065573 Mir350 Mirn350|mir-350|mmu-mir-350 microRNA 350 ncRNA 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2839 chr5 91019094 91019294 + -2.07938 NA intron (NM_026788, intron 7 of 7) intron (NM_026788, intron 7 of 7) -8323 NM_053087 71920 Mm.197319 NM_053087 ENSMUSG00000035020 Epgn 2310069M11Rik|epigen epithelial mitogen protein-coding 0.010000 0.487562 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1914 chr19 52332243 52332443 + -2.08523 NA Intergenic Intergenic 68046 NM_008386 16333 Mm.46269 NM_008386 ENSMUSG00000035804 Ins1 Ins-1|Ins2-rs1 insulin I protein-coding 0.015000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2969 chr6 43667833 43668033 + -2.08523 NA Intergenic RMER10A|LTR|ERVL -1655 NM_001311111 29807 Mm.320979 NM_013861 ENSMUSG00000029735 Tpk1 - thiamine pyrophosphokinase protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2840 chr5 91246008 91246208 + -2.08523 NA Intergenic MTEb|LTR|ERVL-MaLR 36968 NR_040428 100503265 Mm.125059 NR_040428 ENSMUSG00000107198 Gm19619 - predicted gene, 19619 ncRNA 0.005000 0.487562 -50(GAATTATTATGGAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1818 chr18 86796676 86796876 + -2.08710 NA Intergenic Intergenic 84465 NM_001361145 12405 Mm.70775 NM_172633 ENSMUSG00000024647 Cbln2 6330593N19Rik|A730004O05 cerebellin 2 precursor protein protein-coding 0.000000 0.308458 -43(TATGCATTTGCATG,+,0.00),-43(TATGCATTTGCATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1041 chr13 114000777 114000977 + -2.08825 NA intron (NM_172595, intron 4 of 4) intron (NM_172595, intron 4 of 4) 150715 NR_045836 319803 Mm.386896 NM_177004 ENSMUSG00000114213 A430090L17Rik - RIKEN cDNA A430090L17 gene ncRNA 0.010000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2091 chr2 110609632 110609832 + -2.08825 NA intron (NM_001003915, intron 3 of 14) intron (NM_001003915, intron 3 of 14) 12433 NM_001177624 241612 Mm.277148 NM_001003915 ENSMUSG00000041644 Slc5a12 AI315119|D630015G19|SMCT2 solute carrier family 5 (sodium/glucose cotransporter), member 12 protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1534 chr16 83796280 83796480 + -2.08825 NA Intergenic Intergenic -574763 NR_040567 75247 Mm.417813 NR_040567 ENSMUSG00000116907 4930553E22Rik - RIKEN cDNA 4930553E22 gene ncRNA 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1573 chr17 9404395 9404595 + -2.09291 NA Intergenic Intergenic -236473 NR_027881 67791 Mm.158175 NR_027881 ENSMUSG00000097049 6530411M01Rik - RIKEN cDNA 6530411M01 gene ncRNA 0.015000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1159 chr14 78127089 78127289 + -2.09726 NA Intergenic Intergenic -38182 NM_177629 219170 Mm.320428 NM_177629 ENSMUSG00000045655 Fam216b 9330158N17|AU021034 family with sequence similarity 216, member B protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-251 chr1 147638605 147638805 + -2.09726 NA Intergenic MLTR25A|LTR|ERVK 1141018 NM_001145807 215378 Mm.441817 NM_153539 ENSMUSG00000035131 Brinp3 B830045N13Rik|Fam5c bone morphogenetic protein/retinoic acid inducible neural specific 3 protein-coding 0.000000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1647 chr17 79154658 79154858 + -2.09726 NA Intergenic MER21B|LTR|ERVL 102852 NM_001316729 70536 Mm.293870 NM_027455 ENSMUSG00000024084 Qpct 5730422A13Rik glutaminyl-peptide cyclotransferase (glutaminyl cyclase) protein-coding 0.005000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3485 chr9 10233276 10233476 + -2.10136 NA intron (NM_001170787, intron 3 of 24) intron (NM_001170787, intron 3 of 24) 338945 NR_105745 102466147 NR_105745 ENSMUSG00000098408 Mir6237 Gm27411|mmu-mir-6237 microRNA 6237 ncRNA 0.010000 0.393035 43(CTTTTGTTTTGTTTAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-957 chr13 48154637 48154837 + -2.10136 NA intron (NR_102303, intron 1 of 2) intron (NR_102303, intron 1 of 2) -106379 NM_031166 15904 Mm.458006 NM_031166 ENSMUSG00000021379 Id4 Idb4|bHLHb27 inhibitor of DNA binding 4 protein-coding 0.005000 0.447761 -36(TTTTTTTTTTTTATAT,+,0.00),-32(TTTTTTTTATATAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2036 chr2 71699237 71699437 + -2.10136 NA intron (NR_039557, intron 2 of 3) intron (NR_039557, intron 2 of 3) -20080 NR_037979 381371 Mm.330284 NM_201366 ENSMUSG00000064263 Platr26 Gm1631 pluripotency associated transcript 26 ncRNA 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-349 chr10 17599345 17599545 + -2.10136 NA Intergenic Intergenic -123783 NM_010828 17684 Mm.272321 NM_010828 ENSMUSG00000039910 Cited2 AI835299|ER154-like|Mrg1|Msg2|p35srj Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 protein-coding 0.020000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1624 chr17 62458979 62459179 + -2.10136 NA Intergenic Intergenic 422238 NM_207654 13640 Mm.7978 NM_010109 ENSMUSG00000048915 Efna5 AL-1|AV158822|EFL-5|Ephrin-A5|Epl7|LERK-7|RAGS ephrin A5 protein-coding 0.005000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2681 chr4 120066847 120067047 + -2.10136 NA intron (NM_010657, intron 3 of 8) intron (NM_010657, intron 3 of 8) -94259 NM_007902 13615 Mm.284855 NM_007902 ENSMUSG00000028635 Edn2 ET-2|PPET2|VIC endothelin 2 protein-coding 0.005000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2879 chr5 121970438 121970638 + -2.10779 NA intron (NM_007804, intron 2 of 22) intron (NM_007804, intron 2 of 22) 77287 NM_007804 13048 Mm.156172 NM_007804 ENSMUSG00000042589 Cux2 1700051K22Rik|Cutl2|Cux-2 cut-like homeobox 2 protein-coding 0.010000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2108 chr2 121636976 121637176 + -2.10779 NA intron (NM_001360084, intron 1 of 13) intron (NM_001360084, intron 1 of 13) 128583 NM_001369185 241627 Mm.293284 NM_030234 ENSMUSG00000027242 Wdr76 5830411K18Rik|6030457D09|AA517836 WD repeat domain 76 protein-coding 0.000000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-288 chr1 175360853 175361053 + -2.10779 NA intron (NM_001357129, intron 2 of 15) ORR1F|LTR|ERVL-MaLR 131592 NM_001357129 24012 Mm.7956 NM_011880 ENSMUSG00000026527 Rgs7 - regulator of G protein signaling 7 protein-coding 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2286 chr3 62016446 62016646 + -2.11067 NA Intergenic Intergenic -322231 NM_001081295 622434 Mm.153974 NM_001081295 ENSMUSG00000036885 Arhgef26 4631416L12Rik|8430436L14Rik|AI303572|AW491953|SGEF Rho guanine nucleotide exchange factor (GEF) 26 protein-coding 0.010000 0.323383 -27(AATAGCATTACAAAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1236 chr15 3831856 3832056 + -2.12098 NA Intergenic L1M3|LINE|L1 147617 NM_134099 106052 Mm.234191 NM_134099 ENSMUSG00000022184 Fbxo4 1700096C12Rik|AI851261|AW494535|Fbx4 F-box protein 4 protein-coding 0.015000 0.378109 -96(CTTTGAATAATAAATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-985 chr13 77999428 77999628 + -2.12138 NA intron (NM_001163419, intron 7 of 9) intron (NM_001163419, intron 7 of 9) -25374 NM_029315 75507 Mm.443255 NM_029315 ENSMUSG00000093668 Pou5f2 1700013G10Rik|SPRM-1|Sprm1 POU domain class 5, transcription factor 2 protein-coding 0.005000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-441 chr10 68434063 68434263 + -2.12138 NA intron (NM_028491, intron 7 of 7) intron (NM_028491, intron 7 of 7) 107712 NM_028491 73287 Mm.141830 NM_028491 ENSMUSG00000019945 Cabcoco1 1700040L02Rik ciliary associated calcium binding coiled-coil 1 protein-coding 0.010000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1370 chr15 85718099 85718299 + -2.12138 NA Intergenic Intergenic 10880 NR_029727 387245 NR_029727 ENSMUSG00000065564 Mirlet7b Mirnlet7b|let-7b|mmu-let-7b microRNA let7b ncRNA 0.010000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2478 chr3 145892357 145892557 + -2.12138 NA 3' UTR (NM_026993, exon 6 of 6) 3' UTR (NM_026993, exon 6 of 6) -31805 NM_009740 12042 Mm.239141 NM_009740 ENSMUSG00000028191 Bcl10 AI132454|BCL-10|C81403|CARMEN|CIPER|CLAP|ME10|cE10 B cell leukemia/lymphoma 10 protein-coding 0.015000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1805 chr18 76204599 76204799 + -2.12138 NA Intergenic MER77|LTR|ERVL 34147 NR_105776 102465184 NR_105776 ENSMUSG00000098276 Mir6358 Gm27830|mmu-mir-6358 microRNA 6358 ncRNA 0.000000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3649 chr9 112828586 112828786 + -2.12138 NA Intergenic RMER15|LTR|ERVL 572112 NR_033433 620760 Mm.259863 NR_015468 ENSMUSG00000087038 2900079G21Rik C130083B14|Gm6179 RIKEN cDNA 2900079G21 gene ncRNA 0.010000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2309 chr3 70801068 70801268 + -2.12138 NA intron (NR_040556, intron 1 of 3) intron (NR_040556, intron 1 of 3) 6123 NR_040556 625901 Mm.366028 NR_040556 ENSMUSG00000097252 Gm6634 EG625901 predicted gene 6634 ncRNA 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2844 chr5 93146297 93146497 + -2.12138 NA intron (NM_001009818, intron 2 of 9) intron (NM_001009818, intron 2 of 9) 52981 NM_001310669 52398 Mm.394184 NM_001009818 ENSMUSG00000058013 Sept11 6230410I01Rik|AW548875|D5Ertd606e septin 11 protein-coding 0.010000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-313 chr1 187992517 187992717 + -2.12138 NA intron (NM_001357534, intron 2 of 7) intron (NM_001357534, intron 2 of 7) -5210 NM_011935 26381 Mm.89989 NM_011935 ENSMUSG00000026610 Esrrg ERR3|Errg|NR3B3|mKIAA0832 estrogen-related receptor gamma protein-coding 0.035000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1723 chr18 32181706 32181906 + -2.12138 NA intron (NM_011946, intron 1 of 16) L1_Mur3|LINE|L1 18717 NM_011946 26405 Mm.211762 NM_011946 ENSMUSG00000024383 Map3k2 9630061B06Rik|AI585793|Mekk2|Mekk2b mitogen-activated protein kinase kinase kinase 2 protein-coding 0.000000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1353 chr15 74458481 74458681 + -2.12138 NA intron (NR_144499, intron 2 of 3) B3A|SINE|B2 29065 NR_144499 102634630 NR_144499 Gm32168 - predicted gene, 32168 ncRNA 0.015000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2218 chr3 13921704 13921904 + -2.12138 NA intron (NM_001357034, intron 2 of 7) L1M5|LINE|L1 -24501 NM_001163330 76897 Mm.422625 NM_178631 ENSMUSG00000039717 Ralyl 0710005M24Rik RALY RNA binding protein-like protein-coding 0.000000 0.268657 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2315 chr3 75262179 75262379 + -2.12138 NA intron (NM_026460, intron 2 of 8) intron (NM_026460, intron 2 of 8) 7799 NM_026460 67931 Mm.259446 NM_026460 ENSMUSG00000034139 Serpini2 Spi14 serine (or cysteine) peptidase inhibitor, clade I, member 2 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1913 chr19 52332011 52332211 + -2.13067 NA Intergenic Lx9|LINE|L1 67814 NM_008386 16333 Mm.46269 NM_008386 ENSMUSG00000035804 Ins1 Ins-1|Ins2-rs1 insulin I protein-coding 0.005000 0.338308 -16(ATTTGAAGGAGAATGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2762 chr5 40812951 40813151 + -2.13513 NA Intergenic Intergenic 894640 NM_001310592 100972 Mm.41555 NM_027295 ENSMUSG00000029128 Rab28 2700023P08Rik|AW496496 RAB28, member RAS oncogene family protein-coding 0.005000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1991 chr2 45655516 45655716 + -2.13513 NA Intergenic Intergenic -40989 NR_040497 69405 Mm.396184 NR_040497 ENSMUSG00000086202 1700019E08Rik - RIKEN cDNA 1700019E08 gene ncRNA 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-523 chr10 116380214 116380414 + -2.13513 NA intron (NM_029928, intron 30 of 31) intron (NM_029928, intron 30 of 31) -37807 NR_028107 67342 Mm.245800 NM_026098 ENSMUSG00000020164 Kcnmb4os1 1700058G18Rik potassium large conductance calcium-activated channel, subfamily M, beta member 4, opposite strand 1 ncRNA 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-901 chr13 16222899 16223099 + -2.14714 NA Intergenic Intergenic -199576 NR_155430 100503142 Mm.359204 NR_155430 B230303A05Rik B230303A05|EG328191 U1 small nuclear ribonucleoprotein 1C pseudogene pseudo 0.010000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1279 chr15 26572321 26572521 + -2.14714 NA intron (NM_176959, intron 2 of 3) intron (NM_176959, intron 2 of 3) 263373 NM_177597 211147 Mm.54257 NM_177597 ENSMUSG00000022269 March11 9630025C22 membrane-associated ring finger (C3HC4) 11 protein-coding 0.000000 0.373134 -7(AACTCCATGACAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-340 chr10 10089862 10090062 + -2.14714 NA Intergenic Intergenic -188922 NM_001081344 78808 Mm.331751 NM_030191 ENSMUSG00000019790 Stxbp5 0710001E20Rik|4930565N16Rik|AW742610|LGL3|mKIAA1006 syntaxin binding protein 5 (tomosyn) protein-coding 0.000000 0.323383 -74(TAGTTGTCATGTAAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1761 chr18 50864784 50864984 + -2.15288 NA Intergenic Intergenic -253014 NM_001081224 71373 Mm.63546 NM_001081224 ENSMUSG00000073565 Prr16 5430406M13Rik|AI607429 proline rich 16 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3331 chr8 44378053 44378253 + -2.15355 NA Intergenic L1MA9|LINE|L1 -572055 NM_001081286 14107 Mm.27365 NM_001081286 ENSMUSG00000070047 Fat1 2310038E12Rik|AU023433|Fath|mFat1 FAT atypical cadherin 1 protein-coding 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2209 chr3 4846890 4847090 + -2.15355 NA Intergenic L1_Mus3|LINE|L1 48282 NR_045272 100503859 Mm.75172 NR_045272 ENSMUSG00000098659 1110015O18Rik - RIKEN cDNA 1110015O18 gene ncRNA 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-519 chr10 113404571 113404771 + -2.15355 NA Intergenic Lx8|LINE|L1 -475645 NM_001033474 382423 Mm.431239 NM_001033474 ENSMUSG00000074748 Atxn7l3b 4921506J03Rik|6230409E21Rik|AI315132 ataxin 7-like 3B protein-coding 0.005000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-171 chr1 99724258 99724458 + -2.15507 NA Intergenic Intergenic -48043 NM_172851 241175 Mm.251301 NM_172851 ENSMUSG00000067028 Cntnap5b C230078M14Rik|Caspr5-2 contactin associated protein-like 5B protein-coding 0.000000 0.343284 60(GGTTTATTATGCAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3609 chr9 92158301 92158501 + -2.15507 NA Intergenic L1MA4|LINE|L1 -34692 NM_001195693 100504689 NM_001195693 ENSMUSG00000095654 Plscr5 331000 phospholipid scramblase family, member 5 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-83 chr1 54220879 54221079 + -2.15507 NA Intergenic Intergenic -25945 NM_001001883 329152 Mm.132150 NM_172655 ENSMUSG00000042807 Hecw2 A730039N16Rik|D030049F17Rik|Gm971|Nedl2|mKIAA1301 HECT, C2 and WW domain containing E3 ubiquitin protein ligase 2 protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3608 chr9 92158077 92158277 + -2.15507 NA Intergenic RMER15|LTR|ERVL -34916 NM_001195693 100504689 NM_001195693 ENSMUSG00000095654 Plscr5 331000 phospholipid scramblase family, member 5 protein-coding 0.000000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1416 chr16 12180018 12180218 + -2.15507 NA intron (NM_028277, intron 2 of 4) intron (NM_028277, intron 2 of 4) 196005 NM_001174086 72555 Mm.310139 NM_028277 ENSMUSG00000022494 Shisa9 2700045P11Rik|Ckamp44 shisa family member 9 protein-coding 0.015000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1724 chr18 32727081 32727281 + -2.15507 NA intron (NR_045381, intron 4 of 4) intron (NR_045381, intron 4 of 4) -88202 NM_021367 53603 Mm.143716 NM_021367 ENSMUSG00000024379 Tslp - thymic stromal lymphopoietin protein-coding 0.005000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2208 chr3 4797166 4797366 + -2.16667 NA Intergenic Intergenic -1442 NR_045272 100503859 Mm.75172 NR_045272 ENSMUSG00000098659 1110015O18Rik - RIKEN cDNA 1110015O18 gene ncRNA 0.015000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3355 chr8 59448389 59448589 + -2.16826 NA Intergenic Intergenic -377160 NR_126087 75017 Mm.60775 NR_126087 ENSMUSG00000110406 4930470O06Rik - RIKEN cDNA 4930470O06 gene ncRNA 0.000000 0.373134 -23(CTTTCCATGACAATCC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3614 chr9 94531451 94531651 + -2.16866 NA intron (NM_001033145, intron 1 of 2) L1_Mus3|LINE|L1 6530 NM_001033145 68861 Mm.258746 NM_001033145 ENSMUSG00000045414 Dipk2a 1190002N15Rik|GoPro49|HASF divergent protein kinase domain 2A protein-coding 0.000000 0.482587 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-289 chr1 175650149 175650349 + -2.18058 NA intron (NM_133809, intron 7 of 14) RLTR17B_Mm|LTR|ERVK 18056 NM_133809 98256 Mm.27217 NM_133809 ENSMUSG00000039783 Kmo AI046660 kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) protein-coding 0.005000 0.328358 -43(CATACATATGCATC,+,0.00),-43(CATACATATGCATC,-,0.00),15(CATACATATGTATA,+,0.00),15(CATACATATGTATA,-,0.00),28(ACTGCATATGTATG,+,0.00),28(ACTGCATATGTATG,-,0.00),40(TGTAAATATGCATG,-,0.00),50(CATGCATATTTATA,+,0.00),50(CATGCATATTTATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-290 chr1 175650317 175650517 + -2.18058 NA intron (NM_133809, intron 7 of 14) intron (NM_133809, intron 7 of 14) 18224 NM_133809 98256 Mm.27217 NM_133809 ENSMUSG00000039783 Kmo AI046660 kynurenine 3-monooxygenase (kynurenine 3-hydroxylase) protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-790 chr12 50026578 50026778 + -2.18058 NA Intergenic Intergenic -545816 NR_045472 69054 Mm.417838 NR_045472 ENSMUSG00000100844 1810007C17Rik - RIKEN cDNA 1810007C17 gene ncRNA 0.005000 0.298507 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3378 chr8 76949469 76949669 + -2.18273 NA intron (NM_001083906, intron 2 of 8) intron (NM_001083906, intron 2 of 8) 47239 NM_001083906 110784 Mm.324393 NM_001083906 ENSMUSG00000031618 Nr3c2 MR|Mlr nuclear receptor subfamily 3, group C, member 2 protein-coding 0.015000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1312 chr15 49340147 49340347 + -2.18424 NA Intergenic Lx3A|LINE|L1 -548258 NM_001081391 239420 Mm.309363 NM_001081391 ENSMUSG00000022311 Csmd3 4930500N14Rik|mKIAA1894 CUB and Sushi multiple domains 3 protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-893 chr13 11636514 11636714 + -2.18424 NA intron (NM_023868, intron 79 of 104) intron (NM_023868, intron 79 of 104) 114562 NR_027813 664793 Mm.410565 NR_027813 ENSMUSG00000113593 Zp4-ps EG664793|Zp4|Zpb zona pellucida glycoprotein 4, pseudogene pseudo 0.025000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-239 chr1 142174637 142174837 + -2.18424 NA Intergenic Intergenic -1465960 NM_020025 26878 Mm.285580 NM_020025 ENSMUSG00000033849 B3galt2 - UDP-Gal:betaGlcNAc beta 1,3-galactosyltransferase, polypeptide 2 protein-coding 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-103 chr1 66217007 66217207 + -2.18424 NA intron (NM_008632, intron 2 of 13) intron (NM_008632, intron 2 of 13) 41778 NM_001039934 17756 Mm.256966 NM_008632 ENSMUSG00000015222 Map2 G1-397-34|MAP-2|Mtap-2|Mtap2|repro4 microtubule-associated protein 2 protein-coding 0.005000 0.368159 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2551 chr4 34336974 34337174 + -2.18679 NA Intergenic Intergenic -213541 NM_001007589 433693 Mm.389532 NM_026019 ENSMUSG00000028291 Akirin2 2700059D21Rik|AA114675|AA522011|AU019887|Akirin-2 akirin 2 protein-coding 0.015000 0.477612 -7(CATCACTATGCATC,+,0.00) 14(ATTTGAATGACAGAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2207 chr3 4796875 4797075 + -2.19149 NA Intergenic Intergenic -1733 NR_045272 100503859 Mm.75172 NR_045272 ENSMUSG00000098659 1110015O18Rik - RIKEN cDNA 1110015O18 gene ncRNA 0.015000 0.457711 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2668 chr4 110671557 110671757 + -2.20083 NA intron (NM_001284190, intron 3 of 12) intron (NM_001284190, intron 3 of 12) 273959 NM_030231 78933 Mm.435620 NM_030231 ENSMUSG00000061298 Agbl4 4930578N11Rik|4931433A01Rik ATP/GTP binding protein-like 4 protein-coding 0.000000 0.368159 15(TTCTGAATGATAATGC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1203 chr14 109211562 109211762 + -2.20689 NA Intergenic RMER6C|LTR|ERVK -297423 NM_199065 76965 Mm.257268 NM_199065 ENSMUSG00000075478 Slitrk1 3200001I04Rik SLIT and NTRK-like family, member 1 protein-coding 0.005000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2794 chr5 62202375 62202575 + -2.20689 NA Intergenic Intergenic 393632 NM_019468 14380 Mm.347430 NM_019468 ENSMUSG00000089992 G6pd2 G6pdx-ps1|Gpd-2|Gpd2 glucose-6-phosphate dehydrogenase 2 protein-coding 0.005000 0.298507 12(ATATCCATGACACTAC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2142 chr2 138490923 138491123 + -2.20689 NA Intergenic Intergenic 212530 NM_145534 228662 Mm.153405 NM_145534 ENSMUSG00000062098 Btbd3 mKIAA0952 BTB (POZ) domain containing 3 protein-coding 0.000000 0.318408 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2524 chr4 18979191 18979391 + -2.20689 NA intron (NM_001371269, intron 4 of 12) intron (NM_001371269, intron 4 of 12) 143259 NM_001371269 0.010000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-394 chr10 36847600 36847800 + -2.21748 NA Intergenic Intergenic -126844 NM_008229 15182 Mm.19806 NM_008229 ENSMUSG00000019777 Hdac2 D10Wsu179e|YAF1|Yy1bp|mRPD3 histone deacetylase 2 protein-coding 0.005000 0.358209 77(CATCAATATTCAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-825 chr12 76395153 76395353 + -2.22466 NA 3' UTR (NM_001364323, exon 3 of 3) 3' UTR (NM_001364323, exon 3 of 3) -8923 NM_001002012 15512 Mm.296181 NM_008301 ENSMUSG00000059970 Hspa2 70kDa|HSP70.2|HSP70A2|Hsp70-2 heat shock protein 2 protein-coding 0.010000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-673 chr11 87774058 87774258 + -2.22466 NA intron (NM_172449, intron 16 of 31) intron (NM_172449, intron 16 of 31) 13617 NM_172449 207777 Mm.342019 NM_172449 ENSMUSG00000034156 Tspoap1 Bzrap1|D230016K05|PRAX-1|mKIAA0612 TSPO associated protein 1 protein-coding 0.015000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1819 chr18 86847911 86848111 + -2.22930 NA Intergenic Lx9|LINE|L1 135700 NM_001361145 12405 Mm.70775 NM_172633 ENSMUSG00000024647 Cbln2 6330593N19Rik|A730004O05 cerebellin 2 precursor protein protein-coding 0.005000 0.293532 4(TATGCTTTATGTATA,-,0.00) 57(ATTTGAAAGAGAGAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1369 chr15 85112743 85112943 + -2.22930 NA exon (NM_080470, exon 10 of 25) exon (NM_080470, exon 10 of 25) 19114 NM_080470 140557 Mm.182737 NM_080470 ENSMUSG00000022432 Smc1b SMC-1B|SMC1beta|Smc1l2 structural maintenance of chromosomes 1B protein-coding 0.015000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1296 chr15 37778651 37778851 + -2.22930 NA intron (NM_134094, intron 1 of 6) intron (NM_134094, intron 1 of 6) 13249 NM_001170866 52589 Mm.283370 NM_134094 ENSMUSG00000051359 Ncald AI848120|D030020D09Rik|D15Ertd412e neurocalcin delta protein-coding 0.010000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2293 chr3 64272489 64272689 + -2.22930 NA intron (NM_001104614, intron 3 of 5) RMER15|LTR|ERVL 14828 NM_001104614 637004 Mm.469887 NM_001104614 ENSMUSG00000091572 Vmn2r3 EG637004 vomeronasal 2, receptor 3 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1105 chr14 39415153 39415353 + -2.23151 NA intron (NM_001190187, intron 1 of 9) intron (NM_001190187, intron 1 of 9) -57176 NR_131973 432842 Mm.352566 NR_131973 LOC432842 - uncharacterized LOC432842 ncRNA 0.010000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1640 chr17 72314883 72315083 + -2.23919 NA intron (NM_007439, intron 3 of 28) intron (NM_007439, intron 3 of 28) 289324 NM_007439 11682 Mm.311854 NM_007439 ENSMUSG00000055471 Alk CD246|Tcrz anaplastic lymphoma kinase protein-coding 0.005000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-960 chr13 51250755 51250955 + -2.23919 NA Intergenic Intergenic -47789 NR_132443 667728 NR_132443 Hist1h2al EG667728 histone cluster 1, H2al pseudo 0.015000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1384 chr15 93100205 93100405 + -2.24452 NA Intergenic Intergenic 174874 NM_001033275 223827 Mm.22819 NM_001033275 ENSMUSG00000036197 Gxylt1 Glt8d3|Gm1228|Gm87 glucoside xylosyltransferase 1 protein-coding 0.030000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3117 chr7 55133630 55133830 + -2.24452 NA intron (NM_178705, intron 5 of 11) L1_Mus2|LINE|L1 298485 NM_178705 233271 Mm.387344 NM_178705 ENSMUSG00000063297 Luzp2 9330154K17Rik|D130073E01 leucine zipper protein 2 protein-coding 0.000000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1060 chr14 11154214 11154414 + -2.24452 NA intron (NM_001308285, intron 1 of 9) intron (NM_001308285, intron 1 of 9) 7721 NM_001360141 14198 Mm.397619 NM_010210 ENSMUSG00000060579 Fhit AW045638|Fra14A2 fragile histidine triad gene protein-coding 0.010000 0.368159 -3(TATAAATATTCAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3145 chr7 75471646 75471846 + -2.24452 NA intron (NM_029332, intron 1 of 36) L1MB3|LINE|L1 16212 NM_029332 75547 Mm.216107 NM_029332 ENSMUSG00000066406 Akap13 1700026G02Rik|5730522G15Rik|5830460E08Rik|AKAP-13|AKAP-Lbc|BRX|Ht31|LBC|PROTO-LB|PROTO-LBC A kinase (PRKA) anchor protein 13 protein-coding 0.015000 0.402985 -84(TCATTGTGTTGTATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1380 chr15 91583688 91583888 + -2.25143 NA Intergenic Intergenic -10527 NM_001033633 239606 Mm.360596 NM_001033633 ENSMUSG00000036298 Slc2a13 6530403A04|A630029G22Rik|AI505012|Gm308 solute carrier family 2 (facilitated glucose transporter), member 13 protein-coding 0.010000 0.308458 -97(CTCTGAAAGAAAAAAA,-,0.00),60(ATTTGAATGAGAACTG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2890 chr5 130910463 130910663 + -2.25143 NA intron (NM_145218, intron 6 of 10) intron (NM_145218, intron 6 of 10) 396959 NM_145218 212996 Mm.299204 NM_145218 ENSMUSG00000034040 Galnt17 AA388321|E330012B09Rik|Galnt19|Gcap8|Wbscr17 polypeptide N-acetylgalactosaminyltransferase 17 protein-coding 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-40 chr1 31061713 31061913 + -2.25143 NA intron (NR_136907, intron 1 of 3) Lx8|LINE|L1 34641 NR_136907 102634473 Mm.484482 NR_136907 ENSMUSG00000086727 Gm29669 - predicted gene 29669 ncRNA 0.000000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1478 chr16 54748920 54749120 + -2.25417 NA Intergenic ORR1C1|LTR|ERVL-MaLR 534217 NM_178720 239852 Mm.245045 NM_178720 ENSMUSG00000064310 Zpld1 9430016A21Rik zona pellucida like domain containing 1 protein-coding 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1481 chr16 56452174 56452374 + -2.25696 NA Intergenic Intergenic -25572 NM_001014424 320712 Mm.209236 NM_178790 ENSMUSG00000035258 Abi3bp 5033411B22Rik|AI506287|BG172926|D930038M13Rik|TARSH|eratin ABI gene family, member 3 (NESH) binding protein protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2892 chr5 132489829 132490029 + -2.26197 NA intron (NM_001363480, intron 1 of 19) intron (NM_001363480, intron 1 of 19) 53291 NM_001363480 319974 Mm.409595 NM_177047 ENSMUSG00000029673 Auts2 2700063G02Rik|A730011F23Rik|D830032G16Rik autism susceptibility candidate 2 protein-coding 0.010000 0.393035 -99(CCGTTTTTATGGAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2893 chr5 132489985 132490185 + -2.28461 NA intron (NM_001363480, intron 1 of 19) intron (NM_001363480, intron 1 of 19) 53135 NM_001363480 319974 Mm.409595 NM_177047 ENSMUSG00000029673 Auts2 2700063G02Rik|A730011F23Rik|D830032G16Rik autism susceptibility candidate 2 protein-coding 0.015000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2469 chr3 143056941 143057141 + -2.30136 NA Intergenic Intergenic 26427 NM_029164 102636203 Mm.416931 NM_029164 4930519L02Rik - RIKEN cDNA 4930519L02 gene protein-coding 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1299 chr15 41729852 41730052 + -2.30136 NA intron (NR_152565, intron 3 of 17) intron (NR_152565, intron 3 of 17) -58989 NM_001130165 170719 Mm.254267 NM_130885 ENSMUSG00000022307 Oxr1 2210416C20Rik|C7|C7B oxidation resistance 1 protein-coding 0.010000 0.343284 13(TCCTTTTCTTGAAAAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-724 chr12 6587431 6587631 + -2.30136 NA Intergenic Intergenic 792799 NR_045045 73575 Mm.179463 NR_045045 ENSMUSG00000102096 1700101O22Rik - RIKEN cDNA 1700101O22 gene ncRNA 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2856 chr5 101755041 101755241 + -2.30136 NA Intergenic RMER6D|LTR|ERVK -9989 NM_173370 74596 Mm.46764 NM_173370 ENSMUSG00000029330 Cds1 4833409J18Rik|AI314024|AW125888 CDP-diacylglycerol synthase 1 protein-coding 0.015000 0.432836 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1463 chr16 46607185 46607385 + -2.30136 NA Intergenic L3|LINE|CR1 -110318 NM_021496 58998 Mm.40477 NM_021495 ENSMUSG00000022656 Nectin3 2610301B19Rik|3000002N23Rik|4921513D19Rik|AA407785|AU016832|AW538082|CD113|Pvrl3 nectin cell adhesion molecule 3 protein-coding 0.005000 0.398010 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1905 chr19 48137106 48137306 + -2.30136 NA Intergenic Intergenic -68819 NM_025696 66673 Mm.70980 NM_025696 ENSMUSG00000063434 Sorcs3 6330404A12Rik|AW045579 sortilin-related VPS10 domain containing receptor 3 protein-coding 0.010000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3672 chrX 6171796 6171996 + -2.30499 NA intron (NM_001031664, intron 1 of 1) intron (NM_001031664, intron 1 of 1) 1095 NM_001031664 102954 Mm.426101 NM_001031664 ENSMUSG00000073293 Nudt10 AI853080|DIPP3-beta|Dipp3a|Dipp3b|Nudt11 nudix (nucleoside diphosphate linked moiety X)-type motif 10 protein-coding 0.035000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2656 chr4 100360929 100361129 + -2.30499 NA intron (NM_013845, intron 4 of 8) intron (NM_013845, intron 4 of 8) -117838 NM_001033773 381534 Mm.318133 NM_001033773 ENSMUSG00000069733 Ube2u - ubiquitin-conjugating enzyme E2U (putative) protein-coding 0.010000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1529 chr16 79522346 79522546 + -2.30499 NA Intergenic RMER13A1|LTR|ERVK -431349 NM_178855 19146 Mm.5184 NM_008941 ENSMUSG00000022857 Tmprss15 Entk|Prss7 transmembrane protease, serine 15 protein-coding 0.000000 0.527363 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-455 chr10 77203512 77203712 + -2.30538 NA Intergenic MTC|LTR|ERVL-MaLR -37082 NM_009929 12822 Mm.4352 NM_009929 ENSMUSG00000001435 Col18a1 - collagen, type XVIII, alpha 1 protein-coding 0.005000 0.462687 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1610 chr17 50742248 50742448 + -2.30538 NA intron (NM_028162, intron 19 of 21) intron (NM_028162, intron 19 of 21) 43667 NM_001297747 12228 Mm.392910 NM_009770 ENSMUSG00000022863 Btg3 ANA|tob5 B cell translocation gene 3 protein-coding 0.010000 0.472637 -65(GCTGAATATTCAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1164 chr14 80942457 80942657 + -2.30538 NA Intergenic Intergenic 942255 NM_001351947 380924 Mm.26456 NM_001030294 ENSMUSG00000022026 Olfm4 GC1|GW112|Gm296|Gm913|OlfD|pPD4 olfactomedin 4 protein-coding 0.005000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3665 chr9 122315016 122315216 + -2.31305 NA Intergenic RLTR23|LTR|ERV1 -20693 NM_001271873 102566 Mm.87676 NM_133979 ENSMUSG00000037949 Ano10 AI604832|Tmem16k anoctamin 10 protein-coding 0.010000 0.457711 -54(ATTTGCAAAATAGAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1104 chr14 39415036 39415236 + -2.31707 NA intron (NM_001190187, intron 1 of 9) L1_Mus2|LINE|L1 -57293 NR_131973 432842 Mm.352566 NR_131973 LOC432842 - uncharacterized LOC432842 ncRNA 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-600 chr11 39281416 39281616 + -2.34883 NA Intergenic Intergenic 108709 NR_126439 75315 Mm.461295 NR_126439 4930553C11Rik - RIKEN cDNA 4930553C11 gene ncRNA 0.015000 0.378109 -28(GTTTGAATGAGAAAAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1696 chr18 20217301 20217501 + -2.34954 NA Intergenic Intergenic -29939 NM_181680 211924 Mm.391118 NM_181680 ENSMUSG00000034774 Dsg1c Dsg1gamma|Dsg6|dsg1g desmoglein 1 gamma protein-coding 0.005000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2392 chr3 115307341 115307541 + -2.34954 NA Intergenic Lx9|LINE|L1 226476 NM_153157 229759 Mm.54183 NM_153157 ENSMUSG00000027965 Olfm3 B230206G02Rik olfactomedin 3 protein-coding 0.015000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3739 chrX 133610783 133610983 + -2.35227 NA intron (NM_001105246, intron 4 of 4) intron (NM_001105246, intron 4 of 4) -76897 NR_153117 102632590 Mm.403836 NR_153117 ENSMUSG00000096978 Gm26851 - predicted gene, 26851 ncRNA 0.005000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1879 chr19 34614917 34615117 + -2.35818 NA Intergenic Intergenic 7060 NM_001005858 667370 Mm.271850 NM_001005858 ENSMUSG00000062488 Ifit3b I830012O16Rik interferon-induced protein with tetratricopeptide repeats 3B protein-coding 0.005000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3552 chr9 61804533 61804733 + -2.35818 NA Intergenic Intergenic 109877 NM_018853 56040 Mm.3158 NM_018853 ENSMUSG00000007892 Rplp1 2410042H16Rik|Arpp1|C430017H15Rik ribosomal protein, large, P1 protein-coding 0.010000 0.482587 -56(TTTTTGTCATGTACAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1485 chr16 56916343 56916543 + -2.35818 NA intron (NM_001347042, intron 2 of 2) B1F1|SINE|Alu 11496 NM_001347042 100503609 Mm.457937 NM_001347042 ENSMUSG00000109588 Lnp1 Gm19797 leukemia NUP98 fusion partner 1 protein-coding 0.005000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2522 chr4 16482765 16482965 + -2.35818 NA Intergenic Intergenic 318755 NR_045765 100415915 Mm.387180 NR_045765 ENSMUSG00000085112 A530072M11Rik - RIKEN cDNA gene A530072M11 ncRNA 0.005000 0.388060 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1222 chr14 118766090 118766290 + -2.35818 NA Intergenic Intergenic -21681 NM_023878 58187 Mm.390755 NM_021386 ENSMUSG00000022132 Cldn10 6720456I16Rik|Cldn10a|Cldn10b|D14Ertd728e claudin 10 protein-coding 0.030000 0.517413 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1727 chr18 34076323 34076523 + -2.37006 NA Intergenic Lx8|LINE|L1 -69217 NM_013512 13824 Mm.3465 NM_013512 ENSMUSG00000024376 Epb41l4a Epb4.1l4|Epb4.1l4a|NBL4 erythrocyte membrane protein band 4.1 like 4a protein-coding 0.015000 0.358209 -19(CATATATATTCATG,+,0.00),-19(CATATATATTCATG,-,0.00) -64(TAAATGTCATGCACAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3402 chr8 89538563 89538763 + -2.37006 NA Intergenic Intergenic -494501 NM_021390 58198 Mm.214361 NM_021390 ENSMUSG00000031665 Sall1 Msal-3 spalt like transcription factor 1 protein-coding 0.010000 0.467662 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2188 chr2 164698118 164698318 + -2.37006 NA promoter-TSS (NM_030058) promoter-TSS (NM_030058) -283 NM_030058 78239 Mm.160060 NM_030058 ENSMUSG00000017310 Spint4 9230105I15Rik serine protease inhibitor, Kunitz type 4 protein-coding 0.015000 0.393035 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1099 chr14 32906547 32906747 + -2.37006 NA intron (NM_001361602, intron 5 of 5) L1ME1|LINE|L1 49891 NM_001361602 320736 Mm.187910 NM_178791 ENSMUSG00000050666 Vstm4 E130203B14Rik V-set and transmembrane domain containing 4 protein-coding 0.005000 0.432836 22(AATTAAATAACAATGT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-247 chr1 146796823 146797023 + -2.37006 NA intron (NM_001357572, intron 7 of 8) RMER6D|LTR|ERVK 299236 NM_001145807 215378 Mm.441817 NM_153539 ENSMUSG00000035131 Brinp3 B830045N13Rik|Fam5c bone morphogenetic protein/retinoic acid inducible neural specific 3 protein-coding 0.000000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2526 chr4 20166442 20166642 + -2.37629 NA intron (NM_001290410, intron 4 of 5) intron (NM_001290410, intron 4 of 5) 124490 NM_010281 14590 Mm.20461 NM_010281 ENSMUSG00000073987 Ggh gamma-GH gamma-glutamyl hydrolase protein-coding 0.000000 0.412935 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2492 chr3 151578479 151578679 + -2.39452 NA Intergenic Intergenic 140697 NM_133222 170757 Mm.317261 NM_133222 ENSMUSG00000039167 Adgrl4 1110033N21Rik|ETL1|Eltd1|Etl adhesion G protein-coupled receptor L4 protein-coding 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-508 chr10 105332699 105332899 + -2.39452 NA intron (NM_177368, intron 4 of 11) intron (NM_177368, intron 4 of 11) 241680 NM_177368 278279 Mm.25225 NM_177368 ENSMUSG00000036019 Tmtc2 8430438D04Rik|D330034A10Rik transmembrane and tetratricopeptide repeat containing 2 protein-coding 0.005000 0.283582 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2174 chr2 153842274 153842474 + -2.39452 NA intron (NM_001370916, intron 26 of 28) intron (NM_001370916, intron 26 of 28) 28710 NM_001305048 76407 Mm.33629 NM_029599 ENSMUSG00000027480 Sun5 1700021O15Rik|SPAG4L-2|SRG4|Spag4l Sad1 and UNC84 domain containing 5 protein-coding 0.015000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-203 chr1 114155598 114155798 + -2.39452 NA Intergenic L1MA7|LINE|L1 -1529039 NM_001077425 636808 Mm.101576 NM_001077425 ENSMUSG00000070695 Cntnap5a Caspr5-1|EG636808 contactin associated protein-like 5A protein-coding 0.010000 0.348259 27(CTATGCATGACAGAAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1642 chr17 74028198 74028398 + -2.39452 NA intron (NM_053188, intron 1 of 4) intron (NM_053188, intron 1 of 4) 19562 NM_053188 94224 Mm.38933 NM_053188 ENSMUSG00000038541 Srd5a2 5ART2|S5AR 2 steroid 5 alpha-reductase 2 protein-coding 0.000000 0.407960 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2258 chr3 50814785 50814985 + -2.39771 NA Intergenic L1MA4|LINE|L1 -371272 NM_011990 26570 Mm.260988 NM_011990 ENSMUSG00000027737 Slc7a11 9930009M05Rik|AI451155|sut|xCT solute carrier family 7 (cationic amino acid transporter, y+ system), member 11 protein-coding 0.000000 0.358209 -89(CATTCATTTTGCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3133 chr7 69830980 69831180 + -2.41189 NA Intergenic Intergenic 334986 NR_045940 73796 Mm.410832 NR_045940 ENSMUSG00000108885 4930402F11Rik - RIKEN cDNA 4930402F11 gene ncRNA 0.000000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2667 chr4 110004536 110004736 + -2.43570 NA Intergenic RMER4B|LTR|ERVK 26611 NM_172296 242620 Mm.32825 NM_172296 ENSMUSG00000047143 Dmrta2 Dmrt5 doublesex and mab-3 related transcription factor like family A2 protein-coding 0.005000 0.378109 -93(ATATGCATGAAAGAAG,-,0.00),-44(TTTAGAATGACAGAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3458 chr8 122697397 122697597 + -2.43570 NA intron (NM_009824, intron 1 of 11) intron (NM_009824, intron 1 of 11) 1612 NM_009824 12398 Mm.194339 NM_009824 ENSMUSG00000006362 Cbfa2t3 A630044F12Rik|AI465270|AW229127|Cbfa2t3h|ETO-2|Eto2|MTGR2 CBFA2/RUNX1 translocation partner 3 protein-coding 0.000000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-787 chr12 48426736 48426936 + -2.46371 NA Intergenic L1VL4|LINE|L1 -956047 NM_001160112 15228 Mm.4704 NM_008241 ENSMUSG00000020950 Foxg1 2900064B05Rik|BF-1|Bf1|Hfh9|Hfhbf1 forkhead box G1 protein-coding 0.000000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-793 chr12 50670463 50670663 + -2.46945 NA Intergenic L1MDa|LINE|L1 -21340 NM_008858 18760 Mm.133719 NM_008858 ENSMUSG00000002688 Prkd1 PKD|PKD1|Pkcm|Prkcm protein kinase D1 protein-coding 0.005000 0.343284 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3085 chr6 142089057 142089257 + -2.47893 NA intron (NM_023718, intron 14 of 14) intron (NM_023718, intron 14 of 14) -80412 NM_001081318 625716 Mm.295865 NM_001081318 ENSMUSG00000079263 Gm6614 EG625716 predicted gene 6614 protein-coding 0.000000 0.383085 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1600 chr17 36590207 36590407 + -2.47893 NA Intergenic RLTR22_Mus|LTR|ERVK 43232 NM_177635 224754 Mm.246582 NM_177635 ENSMUSG00000037537 H2-M11 - histocompatibility 2, M region locus 11 protein-coding 0.015000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2570 chr4 48726987 48727187 + -2.47983 NA Intergenic Intergenic 63573 NM_026509 68016 Mm.133444 NM_026509 ENSMUSG00000028348 Cavin4 2310039E09Rik|Murc caveolae associated 4 protein-coding 0.010000 0.407960 -13(ATTAGAAAATCAAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2556 chr4 38358296 38358496 + -2.49855 NA Intergenic Intergenic 497087 NR_151606 102636968 Mm.136083 NR_151606 ENSMUSG00000085632 Gm12381 - predicted gene 12381 ncRNA 0.000000 0.338308 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3588 chr9 82572048 82572248 + -2.49855 NA Intergenic Lx10|LINE|L1 -257658 NM_001168240 65099 Mm.41415 NM_022986 ENSMUSG00000032251 Irak1bp1 4921528N06Rik|AI851240|Aabp3|Aip70|Simpl interleukin-1 receptor-associated kinase 1 binding protein 1 protein-coding 0.000000 0.373134 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-348 chr10 17434103 17434303 + -2.49855 NA Intergenic Intergenic -289025 NM_010828 17684 Mm.272321 NM_010828 ENSMUSG00000039910 Cited2 AI835299|ER154-like|Mrg1|Msg2|p35srj Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 2 protein-coding 0.005000 0.383085 -40(TCTTAGCCATGCAAAG,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2479 chr3 147135895 147136095 + -2.51377 NA Intergenic Intergenic 283628 NM_001357217 70892 Mm.187793 NM_027594 ENSMUSG00000036745 Ttll7 1110049N09Rik|4921517B04Rik|C630030B20|mTTLL7 tubulin tyrosine ligase-like family, member 7 protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-650 chr11 67945773 67945973 + -2.51377 NA intron (NM_027963, intron 5 of 13) intron (NM_027963, intron 5 of 13) 19769 NM_027963 71860 Mm.441823 NM_027963 ENSMUSG00000020904 Cfap52 1700019F09Rik|4933417B11Rik|WDRPUH|Wdr16 cilia and flagella associated protein 52 protein-coding 0.010000 0.378109 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-93 chr1 59917732 59917932 + -2.51377 NA intron (NM_001037725, intron 1 of 7) Tigger2b|DNA|TcMar-Tigger 4826 NM_001037725 72750 Mm.258250 NM_001037725 ENSMUSG00000041040 Fam117b 2810425F24Rik|6330416D14Rik|Als2cr13 family with sequence similarity 117, member B protein-coding 0.000000 0.308458 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1438 chr16 24955104 24955304 + -2.53672 NA intron (NM_178665, intron 10 of 12) intron (NM_178665, intron 10 of 12) -104435 NR_040374 319487 Mm.137341 NR_040374 ENSMUSG00000096960 A230028O05Rik - RIKEN cDNA A230028O05 gene ncRNA 0.025000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1567 chr17 4439805 4440005 + -2.55884 NA Intergenic Intergenic -195075 NR_130984 75117 Mm.429393 NR_130984 ENSMUSG00000116767 4930517M08Rik - RIKEN cDNA 4930517M08 gene ncRNA 0.010000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3647 chr9 112134766 112134966 + -2.55989 NA intron (NM_001362029, intron 14 of 19) intron (NM_001362029, intron 14 of 19) -16155 NR_029823 723815 NR_029823 ENSMUSG00000065441 Mir128-2 Mirn128-2|Mirn128b|mir-128-2|mir-128b microRNA 128-2 ncRNA 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3473 chr9 5217605 5217805 + -2.56220 NA Intergenic Intergenic -80812 NM_009807 12362 Mm.1051 NM_009807 ENSMUSG00000025888 Casp1 ICE|Il1bc caspase 1 protein-coding 0.005000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1160 chr14 78127540 78127740 + -2.56667 NA Intergenic L1MA4|LINE|L1 -38633 NM_177629 219170 Mm.320428 NM_177629 ENSMUSG00000045655 Fam216b 9330158N17|AU021034 family with sequence similarity 216, member B protein-coding 0.000000 0.417910 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2805 chr5 72586671 72586871 + -2.56948 NA intron (NR_163693, intron 1 of 2) intron (NR_163693, intron 1 of 2) 779 NR_163693 545758 Mm.332426 NM_001024147 ENSMUSG00000060204 Gm5868 EG545758 predicted gene 5868 pseudo 0.025000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-676 chr11 89041368 89041568 + -2.56948 NA exon (NM_019505, exon 10 of 11) exon (NM_019505, exon 10 of 11) 19280 NR_156181 56077 Mm.153695 NM_019505 ENSMUSG00000000276 Dgke C87606|DAGK6|DGK|DGK-epsilon diacylglycerol kinase, epsilon protein-coding 0.035000 0.502488 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-792 chr12 50670227 50670427 + -2.58096 NA Intergenic Intergenic -21104 NM_008858 18760 Mm.133719 NM_008858 ENSMUSG00000002688 Prkd1 PKD|PKD1|Pkcm|Prkcm protein kinase D1 protein-coding 0.005000 0.328358 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2592 chr4 65905715 65905915 + -2.60606 NA intron (NM_207109, intron 10 of 22) intron (NM_207109, intron 10 of 22) 300829 NM_001161782 69807 Mm.22786 NM_053084 ENSMUSG00000051675 Trim32 1810045E12Rik|3f3|BBS11|Zfp117 tripartite motif-containing 32 protein-coding 0.005000 0.442786 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2077 chr2 106041269 106041469 + -2.61676 NA Intergenic Intergenic -37820 NM_026992 99349 Mm.25661 NM_026992 ENSMUSG00000027166 Dnajc24 1700030A21Rik|2610027M02Rik|AV066965|AW240712|Dph4|MmDjC7|Zcsl3 DnaJ heat shock protein family (Hsp40) member C24 protein-coding 0.025000 0.477612 -64(CTTTAAATAACAAAAG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3462 chr8 124176128 124176328 + -2.63453 NA Intergenic Intergenic -55166 NM_139272 108148 Mm.33808 NM_139272 ENSMUSG00000089704 Galnt2 AI480629 polypeptide N-acetylgalactosaminyltransferase 2 protein-coding 0.025000 0.497512 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-937 chr13 34550843 34551043 + -2.64442 NA Intergenic Intergenic 101738 NM_025831 66895 Mm.28943 NM_025831 ENSMUSG00000021411 Pxdc1 1300014I06Rik PX domain containing 1 protein-coding 0.005000 0.452736 -21(ATCTGAATACCAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3352 chr8 58050869 58051069 + -2.65453 NA intron (NM_175032, intron 4 of 11) L1M5|LINE|L1 -397914 NM_144731 108150 Mm.62886 NM_144731 ENSMUSG00000031608 Galnt7 AI225872 polypeptide N-acetylgalactosaminyltransferase 7 protein-coding 0.010000 0.303483 35(ATAAGAATCAGAAAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-791 chr12 50026760 50026960 + -2.65453 NA Intergenic Intergenic -545998 NR_045472 69054 Mm.417838 NR_045472 ENSMUSG00000100844 1810007C17Rik - RIKEN cDNA 1810007C17 gene ncRNA 0.000000 0.323383 -83(ATATGAATCAGAAAAT,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-177 chr1 104704762 104704962 + -2.65453 NA Intergenic Lx2|LINE|L1 -63658 NM_011800 23836 Mm.103640 NM_011800 ENSMUSG00000050840 Cdh20 Cdh7 cadherin 20 protein-coding 0.000000 0.492537 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2227 chr3 21419234 21419434 + -2.67250 NA Intergenic Intergenic -657318 NM_030732 81004 Mm.202966 NM_030732 ENSMUSG00000027630 Tbl1xr1 8030499H02Rik|A630076E03Rik|AW539987|C21|C230089I12Rik|DC42|Ira1|TBLR1 transducin (beta)-like 1X-linked receptor 1 protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1383 chr15 92229260 92229460 + -2.67893 NA intron (NM_001358051, intron 6 of 25) intron (NM_001358051, intron 6 of 25) 68003 NM_001159647 12805 Mm.4911 NM_007727 ENSMUSG00000055022 Cntn1 AW495098|CNTN|F3cam|usl contactin 1 protein-coding 0.005000 0.363184 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3074 chr6 133186606 133186806 + -2.68464 NA Intergenic Intergenic 81467 NM_001271582 381820 Mm.291762 NM_001163445 ENSMUSG00000072704 Smim10l1 2700089E24Rik|AI662692 small integral membrane protein 10 like 1 protein-coding 0.010000 0.452736 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1016 chr13 97780152 97780352 + -2.70181 NA Intergenic Intergenic 29140 NR_152263 111365222 Mm.440079 NR_152263 Eyelinc18 - uncharacterized EyeLinc18 ncRNA 0.015000 0.393035 52(TCTTTGTCATGAATTT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-749 chr12 27048606 27048806 + -2.70283 NA Intergenic Intergenic 66289 NR_045052 100504347 Mm.130500 NR_045052 ENSMUSG00000094002 Gm20187 - predicted gene, 20187 ncRNA 0.005000 0.402985 45(GTTTGCATCACTAAGG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-491 chr10 100903090 100903290 + -2.70658 NA Intergenic Intergenic -161555 NR_152765 102639396 Mm.404529 NR_152765 Gm35722 - predicted gene, 35722 ncRNA 0.000000 0.353234 43(CCTCTATTTTGCTAAT,+,0.00),60(TTTTAGTCATTCTTAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-392 chr10 36301911 36302111 + -2.70658 NA Intergenic Intergenic -204796 NM_001253355 319415 Mm.332442 NM_001081208 ENSMUSG00000044499 Hs3st5 D930005L05Rik|Gm1151|Hs3ost5 heparan sulfate (glucosamine) 3-O-sulfotransferase 5 protein-coding 0.005000 0.318408 -96(CATGCATATTCTTA,+,0.00),-45(TATACATATGCAGA,+,0.00),-45(TATACATATGCAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3075 chr6 133186759 133186959 + -2.70946 NA Intergenic L1Md_F2|LINE|L1 81620 NM_001271582 381820 Mm.291762 NM_001163445 ENSMUSG00000072704 Smim10l1 2700089E24Rik|AI662692 small integral membrane protein 10 like 1 protein-coding 0.000000 0.373134 -54(ATTTCAATCACAATTA,-,0.00),-36(TTTTACAAAACAATCC,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1427 chr16 21929800 21930000 + -2.71827 NA 3' UTR (NM_172821, exon 13 of 13) 3' UTR (NM_172821, exon 13 of 13) 17652 NM_025693 66664 Mm.46480 NM_025693 ENSMUSG00000022856 Tmem41a 2900010K02Rik|5730578N08Rik transmembrane protein 41a protein-coding 0.015000 0.333333 -76(GTATTGTTTTGTTAAA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1212 chr14 115156525 115156725 + -2.72620 NA intron (NM_175500, intron 2 of 7) Lx9|LINE|L1 64410 NM_175500 103978 Mm.320791 NM_175500 ENSMUSG00000022112 Gpc5 A230034F01Rik glypican 5 protein-coding 0.005000 0.368159 35(CATGAATAATGATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3119 chr7 57199052 57199252 + -2.73387 NA intron (NM_008074, intron 3 of 9) intron (NM_008074, intron 3 of 9) 188063 NM_008074 14407 Mm.322667 NM_008074 ENSMUSG00000055026 Gabrg3 6330406O05Rik|B230362M20Rik|Gabrg-3 gamma-aminobutyric acid (GABA) A receptor, subunit gamma 3 protein-coding 0.000000 0.313433 33(TTATTCTCATGCACAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3254 chr7 137735181 137735381 + -2.73392 NA Intergenic Intergenic 297607 NR_033611 620016 Mm.388932 NR_033611 ENSMUSG00000100863 Gm12669 - glutaredoxin 3 pseudogene pseudo 0.010000 0.422886 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-142 chr1 80551954 80552154 + -2.77528 NA intron (NM_175291, intron 28 of 55) intron (NM_175291, intron 28 of 55) 106122 NR_040460 72208 Mm.396181 NR_040460 ENSMUSG00000101483 1700016L21Rik CD11c-DTR|DCKO|DTR-GFP|DTR-GRP|Jr3|Tg(Itgax-DTR/EGFP)57Lan RIKEN cDNA 1700016L21 gene ncRNA 0.005000 0.378109 -34(ATTTGAAGAACAGAGA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3725 chrX 96127395 96127595 + -2.77528 NA intron (NM_010833, intron 1 of 12) intron (NM_010833, intron 1 of 12) 31450 NM_010833 17698 Mm.138876 NM_010833 ENSMUSG00000031207 Msn C78546 moesin protein-coding 0.005000 0.358209 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1335 chr15 57199107 57199307 + -2.77803 NA Intergenic Intergenic 65954 NM_001357930 210463 Mm.26555 NM_172378 ENSMUSG00000022366 Slc22a22 oat-pg solute carrier family 22 (organic cation transporter), member 22 protein-coding 0.015000 0.437811 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3151 chr7 77882917 77883117 + -2.77803 NA Intergenic Intergenic 694821 NM_008746 18213 Mm.33496 NM_008746 ENSMUSG00000059146 Ntrk3 AW125844|Ntrk3_tv3|TrkC neurotrophic tyrosine kinase, receptor, type 3 protein-coding 0.010000 0.273632 -59(ATATAAATAAAAAATA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1228 chr14 122367193 122367393 + -2.78082 NA intron (NR_033326, intron 3 of 3) intron (NR_033326, intron 3 of 3) 83822 NR_033325 328479 Mm.86095 NR_033325 ENSMUSG00000064052 Gm5089 6530402A20|C030005G22Rik|EG328479 predicted gene 5089 ncRNA 0.030000 0.512438 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-105 chr1 66570979 66571179 + -2.78303 NA intron (NM_001368824, intron 23 of 64) intron (NM_001368824, intron 23 of 64) 103145 NM_175510 329178 Mm.44798 NM_175510 ENSMUSG00000055567 Unc80 C030018G13Rik|C230061B10Rik|UNC-80 unc-80, NALCN activator protein-coding 0.005000 0.338308 -77(TCTTTTGCATGCTAAT,+,0.00),70(ATTTACATCTCAAATG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2714 chr5 5673408 5673608 + -2.78861 NA exon (NM_028734, exon 6 of 6) exon (NM_028734, exon 6 of 6) -9276 NM_172447 207686 Mm.319007 NM_172447 ENSMUSG00000040473 Cfap69 4921525K03|A330021E22Rik|AI427898 cilia and flagella associated protein 69 protein-coding 0.030000 0.472637 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3159 chr7 82392038 82392238 + -2.79421 NA intron (NM_001190374, intron 3 of 29) intron (NM_001190374, intron 3 of 29) 56444 NM_001190374 269959 Mm.65306 NM_001190374 ENSMUSG00000070469 Adamtsl3 9230119C12Rik|C130057K09|mKIAA1233 ADAMTS-like 3 protein-coding 0.025000 0.507463 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1237 chr15 6305115 6305315 + -2.82809 NA intron (NM_001008702, intron 1 of 13) L1M4b|LINE|L1 5426 NM_001008702 13132 Mm.240830 NM_023118 ENSMUSG00000022150 Dab2 5730435J12Rik|AA960054|AI957090|D15Wsu122e|D630005B22Rik|Doc-2|Doc2|p96 disabled 2, mitogen-responsive phosphoprotein protein-coding 0.000000 0.313433 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2222 chr3 17631972 17632172 + -2.84093 NA Intergenic Intergenic -157849 NR_033490 70441 Mm.458192 NR_033490 ENSMUSG00000100252 Mir124-2hg 100040120|2610100L16Rik|6430547I21Rik|A930005K07Rik|AW125202|Gm2612 Mir124-2 host gene (non-protein coding) ncRNA 0.000000 0.328358 -44(CATAAATAATGCAAA,+,0.00),-44(CATAAATAATGCAAA,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2061 chr2 96308698 96308898 + -2.84093 NA Intergenic Lx5b|LINE|L1 -9371 NM_001289742 241568 Mm.241682 NM_178725 ENSMUSG00000050587 Lrrc4c 6430556C10Rik|NGL-1 leucine rich repeat containing 4C protein-coding 0.000000 0.482587 33(TCCTTCTCATTGAGAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1655 chr17 82060427 82060627 + -2.87613 NA Intergenic Intergenic -322140 NM_001112798 20541 Mm.265834 NM_011406 ENSMUSG00000054640 Slc8a1 AI852629|AV344025|D930008O12Rik|Ncx1 solute carrier family 8 (sodium/calcium exchanger), member 1 protein-coding 0.030000 0.427861 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3750 chrX 141755974 141756174 + -2.90378 NA Intergenic L1MB7|LINE|L1 -30857 NM_010572 16370 Mm.261591 NM_010572 ENSMUSG00000054667 Irs4 IRS-4 insulin receptor substrate 4 protein-coding 0.005000 0.333333 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2880 chr5 122251062 122251262 + -2.92340 NA intron (NM_001039153, intron 6 of 13) intron (NM_001039153, intron 6 of 13) 13298 NM_001039153 654470 Mm.28804 NM_001039153 ENSMUSG00000038593 Tctn1 G730031O11Rik|Tect1 tectonic family member 1 protein-coding 0.005000 0.542289 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2088 chr2 108623557 108623757 + -2.96407 NA Intergenic Intergenic 654633 NM_029790 76894 Mm.330451 NM_029790 ENSMUSG00000057234 Mettl15 0610027B03Rik|AI303697|AW049952|Mett5d1 methyltransferase like 15 protein-coding 0.005000 0.323383 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2653 chr4 98914952 98915152 + -2.96566 NA Intergenic ERV3-16A3_I-int|LTR|ERVL -8758 NM_001356424 230484 Mm.371692 NM_146144 ENSMUSG00000028560 Usp1 - ubiquitin specific peptidase 1 protein-coding 0.005000 0.402985 -75(AATCAATGATGCATA,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2569 chr4 48726634 48726834 + -3.00909 NA Intergenic Intergenic 63220 NM_026509 68016 Mm.133444 NM_026509 ENSMUSG00000028348 Cavin4 2310039E09Rik|Murc caveolae associated 4 protein-coding 0.020000 0.368159 -57(GCTTTATAATGCACAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1746 chr18 42909115 42909315 + -3.03833 NA intron (NM_028392, intron 1 of 8) intron (NM_028392, intron 1 of 8) -9709 NR_073583 72930 Mm.26134 NM_027531 ENSMUSG00000024500 Ppp2r2b 2900026H06Rik|6330404L05Rik|E130009M08Rik|PP2A-PR55B|PR55-BETA|SCA12 protein phosphatase 2, regulatory subunit B, beta protein-coding 0.010000 0.363184 -26(CTATCCATGACAATTG,-,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3584 chr9 81954696 81954896 + -3.09735 NA intron (NM_175213, intron 3 of 4) intron (NM_175213, intron 3 of 4) 91126 NM_001357477 75033 Mm.335329 NM_175213 ENSMUSG00000043289 Mei4 4930486G11Rik meiotic double-stranded break formation protein 4 protein-coding 0.000000 0.358209 -27(TTTGAATATGGATT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3765 chrX 157519040 157519240 + -3.13143 NA Intergenic Lx4A|LINE|L1 -21664 NR_040420 625253 Mm.463485 NR_040420 Gm6568 EG625253 DnaJ (Hsp40) homolog, subfamily B, member 9 pseudogene pseudo 0.005000 0.477612 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-3160 chr7 82392269 82392469 + -3.23833 NA intron (NM_001190374, intron 3 of 29) intron (NM_001190374, intron 3 of 29) 56675 NM_001190374 269959 Mm.65306 NM_001190374 ENSMUSG00000070469 Adamtsl3 9230119C12Rik|C130057K09|mKIAA1233 ADAMTS-like 3 protein-coding 0.000000 0.353234 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2801 chr5 69548390 69548590 + -3.27772 NA Intergenic Intergenic -5843 NM_023784 75581 Mm.154776 NM_023784 ENSMUSG00000029158 Yipf7 2310016N21Rik|Yip1b Yip1 domain family, member 7 protein-coding 0.000000 0.442786 -73(GTATACCCATGCATAT,+,0.00) OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2633 chr4 88393470 88393670 + -3.27772 NA exon (NM_001081184, exon 37 of 44) exon (NM_001081184, exon 37 of 44) 45356 NM_025760 66775 Mm.386788 NM_025760 ENSMUSG00000028497 Hacd4 4933428I03Rik|Hcad4|Ptplad2 3-hydroxyacyl-CoA dehydratase 4 protein-coding 0.040000 0.522388 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-34 chr1 25759744 25759944 + -3.27772 NA intron (NM_175642, intron 2 of 30) intron (NM_175642, intron 2 of 30) 69863 NM_175642 210933 Mm.336569 NM_175642 ENSMUSG00000033569 Adgrb3 A830096D10Rik|Bai3 adhesion G protein-coupled receptor B3 protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-1108 chr14 46240433 46240633 + -3.29741 NA Intergenic Intergenic -138991 NR_037981 100041724 Mm.383311 NM_001099324 ENSMUSG00000079261 Gm15217 - predicted gene 15217 ncRNA 0.015000 0.447761 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-344 chr10 15272372 15272572 + -3.42764 NA Intergenic L1_Mus2|LINE|L1 512525 NM_008703 18101 Mm.487342 NM_008703 ENSMUSG00000019865 Nmbr BB182387 neuromedin B receptor protein-coding 0.000000 0.348259 OSKM-D3-R2_trimmed_macs2_callpeak_summits.bed_rmchrM_unique-2821 chr5 83067584 83067784 + -3.94202 NA Intergenic Intergenic -268619 NR_035415 100316803 NR_035415 ENSMUSG00000080586 Mir1187 Mirn1187|mir-1187|mmu-mir-1187 microRNA 1187 ncRNA 0.015000 0.368159