This README.txt file was generated on <20220327> by ------------------- GENERAL INFORMATION ------------------- 1. Title of Dataset/PhD: Climate change, wildlife trade, and the ecophysiological consequences of nocturnal vs. diurnal activity patterns. 2. Author Information First author Pauline C. Dufour Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China pdufour@connect.hku.hk Corresponding author Timothy C. Bonebrake Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China tbone@hku.hk --------------------- DATA & FILE OVERVIEW --------------------- Directory of Files: A. Filename: Dufour_Chapter1_Dielvariation_thermaltolerance.csv Short description: Critical thermal maximum (Ctmax) and Critical thermal minimum (Ctmin) values for 101 lizards (6 species) captured in Hong Kong and South Africa measured during the day and the night B. Filename: Dufour_Chapter2_Dielvariation_thermalpreference.csv Short description: Thermal parameters for 36 lizards (3 species) captured in Hong Kong C. Filename: Dufour_Chapter3_thermaltolerance_precipitation gradient.csv Short description: Operative temperature recordings for 6 sites and 4 different microhabitats at each site in the Western Cape, South Africa, as well as corresponding values of thermal tolerance for population of Chondrodactylus bibronii and Trachylepis variegata, at each site D. Filename: Dufour_chapter4_fasta_sequences.fasta Short description: Sequences obtained for an 1038-bp of NADH dehydrogenase subunit 2 (ND2) for 81 individual Tokay geckos, obtained from local wild populations and TCM shops. E. Filename: Dufour_chapter4_captures_tokaygeckos.csv Short description: Field sampling sheet recording information (morphometrical and morphological) on Tokay geckos captured around HK F. Filename: Dufour_chapter4_results_stable_isotopes.csv Short description: Nitrogen-15 and carbon-13 (d15N and d13C) ratios in ~1mg of the tail tip of wild (41), captive (3), and TCM shops (36) individual Tokay geckos, obtained in Hong Kong G. Filename: Dufour_chapter4_price_markets.csv Short description: Price (HKD) of a pair dried Tokay geckos purchased in April 2021 in Traditional Chinese Medicine Shops in Hong Kong. File Naming Convention: Dufour_Chapter-number of chapter_description of data ------------------------------------------------------------------------ DATA DESCRIPTION FOR: [Dufour_chapter1_Dielvariation_thermaltolerance] ------------------------------------------------------------------------ 1. Title of Chapter: No consistent effect of daytime versus night-time measurement of thermal tolerance in nocturnal and diurnal lizards. 2. Author Information #First author Pauline C. Dufour Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China pdufour@connect.hku.hk #Corresponding author Timothy C. Bonebrake Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China tbone@hku.hk #Co-authors Toby P. N. Tsang Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China paknok@connect.hku.hk Susana Clusella-Trullas Department of Botany and Zoology Stellenbosch University, Stellenbosch, South Africa sct333@sun.ac.za 3. Date of data collection: 2018-SEPT to 2019-NOV 4. Geographic location of data collection: Hong Kong and South Africa 5. Funding sources: Hong Kong Research Grant Council General Research Fund [17152316] --------------------- DATA --------------------- Accepted for publication (February 2022) in Conservation Physiology (open-access) Pauline C. Dufour, Toby P. N. Tsang, Susana Clusella-Trullas, Timothy C. Bonebrake. No consistent effect of daytime versus night-time measurement of thermal tolerance in nocturnal and diurnal lizards. Dryad access doi:10.5061/dryad.pc866t1qw File list: dufour_dielviariation_thermaltolerance_lizards.csv File description: dufour_dielviariation_thermaltolerance_lizards.csv contains thermal tolerance data measured for lizards in Hong Kong and South Africa. 1. Number of variables: 18 2. Number of cases/rows: 201 3. Missing data codes: NA 4. Variable List "Ind" identifies the individual number. "Location" notes where the experiment took place. "Site" identifies where the lizards originated. "Family" "Genus" and "Species" indicates the taxonomic information of each individual. "SVL" is the snout-vent length. "Mass" and "total_length" are the measured weights and lengths of the individual. "Sex" indicates whether the individual was identified as male, female or juvenile. "Period" is when the thermal tolerance measurement was taken, day or night. "Ctmin" is the critical thermal minimum and "Ctmax" is the critical thermal maximum. "No_Ctmin" and "No_Ctmax" indicate the points in the sequence for which the measurement (Ctmin and Ctmax respectively) was taken. "Hour_Ctmin" and "Hour_Ctmax" notes the hour in which the measurments were taken. "Activity" is the described activity pattern of the species, dirunal, nocturnal or cathemeral. ------------------------------------------------------------------------ DATA DESCRIPTION FOR: [Dufour_chapter2_Dielvariation_thermalpreference] ------------------------------------------------------------------------ 1. Title of Chapter: Diel variation in body temperature selection for nocturnal lizards measured by machine learning 2. Author Information #First author Pauline C. Dufour Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China pdufour@connect.hku.hk #Corresponding author Timothy C. Bonebrake Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China tbone@hku.hk #Co-authors Felix Hol Center for Interdisplinarity & Institut Pasteur Paris, France felixhol@gmail.com Elliott Miot Center for Immunology & Infection Science Park, Hong Kong SAR, China elliott.miot@c2i.hk Tin Yan Hui Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China hty13@connect.hku.hk Susana Clusella-Trullas Department of Botany and Zoology Stellenbosch University, Stellenbosch, South Africa sct-333@sun.ac.za 3. Date of data collection: 2019-MAR to 2019-AUG 4. Geographic location of data collection: Hong Kong 5. Funding sources: Hong Kong Research Grant Council General Research Fund [17152316] --------------------- DATA --------------------- File list: Dufour_chapter2_dielviariation_thermalpreference.csv File description: dDufour_chapter2_dielviariation_thermalpreference.csv contains thermal parameters values measured for lizards in Hong Kong in a thermal gradient. 1. Number of variables: 16 2. Number of cases/rows: 68 3. Missing data codes: NA 4. Variable List: "Species" identifies the species "ID" identifies the individual "SVL" is the Snout-Vent Length "bodyparts" is the body part detected by the algorithm "light" is the level of light (i.e., '0' for dark, '1' for light) "period" is the period of time (i.e., "night" or "day") "median" is the median value of Tb recorded "median Tset" "mean_temp" is the mean value for Tb "sd" is the standard deviation around the mean value for temperature selected "Q1_ind" corresponds to the 25th percentile of temperature selected "Q3_ind" corresponds to the 75th percentile of temperature selected "IQR_ind" corresponds to the Interquartile Range (i.e. Q3_ind - Q1_ind) "VTM_ind" corresponds to the Voluntary Thermal Maximum, calculated as the 90th percentile "dist_total_ind" identifies the total distance (in pixels) covered by each individual inside the gradient "Ctmax" identifies the critical thermal maximum "Ctmin" identifies the critical thermal minimum --------------------------------------------------------------------------------------------- DATA DESCRIPTION FOR: [Dufour_chapter3_thermaltolerance_precipitationgradient] --------------------------------------------------------------------------------------------- 1. Title of Chapter: Intra-specific variation in thermal tolerance for a diurnal and a nocturnal lizard species along a precipitation gradient 2. Author Information #First author Pauline C. Dufour Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China pdufour@connect.hku.hk #Corresponding author Timothy C. Bonebrake Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China tbone@hku.hk #Co-authors Toby P. N. Tsang Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China paknok@connect.hku.hk Susana Clusella-Trullas Department of Botany and Zoology Stellenbosch University, Stellenbosch, South Africa sct333@sun.ac.za 3. Date of data collection: 2018-SEPT to 2019-NOV 4. Geographic location of data collection: South Africa 5. Funding sources: Hong Kong Research Grant Council General Research Fund [17152316] -------------------- DATA --------------------- File list: Dufour_chapter3_thermaltolerance_precipitationgradient.csv File description: Dufour_chapter3_thermaltolerance_precipitationgradient.csv contains operative temperature recordings for 6 sites and 4 different microhabitats at each site in the Western Cape, South Africa, as well as corresponding values of thermal tolerance for population of Chondrodactylus bibronii and Trachylepis variegata, at each site 1. Number of variables: 14 2. Number of cases/rows: 300,362 3. Missing data codes: NA 4. Variable List: "time" corresponds to the time and the date of the recording (one recording every hour of every day) "temp" corresponds to the hourly temperature reading "otm" corresponds to the number of the operative temperature model collecting data on temperature and time "period" corresponds to the 6-month period during which the recordings took place (i.e., p1, p2, p3, or p4, from end of 2018 to end of 2019) "site" corresponds to the site of sampling "microhab" identifies the type of microhabitat "Cbib_avgCtmax" is the mean value of Ctmax (Critical Thermal Maximum) for each population of Chondrodactylus bibronii "Cbib_sdCtmax" is the standard value around the mean Ctmax for each population of Chondrodactylus bibronii "Cbib_avgCtmin" is the mean value of Ctmin (Critical Thermal Minimum) for each population of Chondrodactylus bibronii "Cbib_sdCtmin" is the standard value around the mean Ctmin for each population of Chondrodactylus bibronii "Tvar_avgCtmax" is the mean value of Ctmax (Critical Thermal Maximum) for each population of Trachylepis variegata "Tvar_sdCtmax" is the standard value around the mean Ctmax for each population of Trachylepis variegata "Tvar_avgCtmin" is the mean value of Ctmin (Critical Thermal Minimum) for each population of Trachylepis variegata "Tvar_sdCtmin" is the standard value around the mean Ctmin for each population of Trachylepis variegata --------------------------------------------------------------------------------------------- DATA DESCRIPTION FOR: [Dufour_chapter4_fasta_sequences] --------------------------------------------------------------------------------------------- 1. Title of Chapter: Home and hub: pet trade and traditional medicine impact reptile populations in source locations and destinations 2. Author Information #First author Pauline C. Dufour Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China pdufour@connect.hku.hk #Corresponding author Timothy C. Bonebrake Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China tbone@hku.hk #Co-authors Elliott F. Miot Center for Immunology & Infection Science Park, Hong Kong SAR, China elliott.miot@c2i.hk Tsz Chun So Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China u3547046@connect.hku.hk Shun Long Tang Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China tsl0736@connect.hku.hk Emily E. Jones Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China jonese@hku.hk Tsz Ching Kong Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China u3547452@connect.hku.hk Felix Landry Yuan Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China felixlandryyuan@gmail.com Yik-Hei Sung Science Unit Lingnan University, Hong Kong SAR, China heisyh@gmail.com Caroline Dingle Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China cdingle@hku.hk 3. Date of data collection: 2020-AUG to 2020-NOV 4. Geographic location of data collection: Hong Kong 5. Funding sources: Ocean Park Conservation Foundation (2020/21) ----------------- DATA ----------------- Name: Dufour_chapter4_fasta_sequences Description: Sequences obtained for an 752-bp of NADH dehydrogenase subunit 2 (ND2) for 81 individual Tokay geckos, obtained from local wild populations and TCM shops. 1. Number of variables: 1 2. Number of cases/rows: 81 3. Missing data codes: NA 4. Variable List- not applicable -------------------------- METHODOLOGICAL INFORMATION -------------------------- 1. Software-specific information: Name: Geneious Version: 10 Software description: Geneious Prime® 2021.1.1, Build 2021-03-12 13:25, Java Version 11.0.9+11 (64 bit) Open Source? (N) --------------------------------------------------------------------------------------------- DATA DESCRIPTION FOR: [Dufour_chapter4_captures_tokaygeckos] --------------------------------------------------------------------------------------------- 1. Title of Chapter: Home and hub: pet trade and traditional medicine impact reptile populations in source locations and destinations 2. Author Information #First author Pauline C. Dufour Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China pdufour@connect.hku.hk #Corresponding author Timothy C. Bonebrake Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China tbone@hku.hk #Co-authors Elliott F. Miot Center for Immunology & Infection Science Park, Hong Kong SAR, China elliott.miot@c2i.hk Tsz Chun So Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China u3547046@connect.hku.hk Shun Long Tang Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China tsl0736@connect.hku.hk Emily E. Jones Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China jonese@hku.hk Tsz Ching Kong Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China u3547452@connect.hku.hk Felix Landry Yuan Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China felixlandryyuan@gmail.com Yik-Hei Sung Science Unit Lingnan University, Hong Kong SAR, China heisyh@gmail.com Caroline Dingle Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China cdingle@hku.hk 3. Date of data collection: 2020-AUG to 2020-NOV 4. Geographic location of data collection: Hong Kong 5. Funding sources: Ocean Park Conservation Foundation (2020/21) ------------ DATA ------------ Name: Dufour_chapter4_captures_tokaygeckos.csv Description: Field sampling sheet recording information (morphometrical and morphological) on Tokay geckos captured around HK 1. Number of variables: 13 2. Number of cases/rows: 54 3. Missing data codes: NA 4. Variable List "Date" corresponds to the date of capture "Time" corresponds to the time HH:mm "Location" corresponds to the broad location of capture "Species" identifies the species "Ind" identifies the individual identifier "Ta" corresponds to the air temperature measured at the time of capture "SVL" stands for Snout-Vent length (mm) measured with a caliper "TailLength" is for the length of the tail (mm) measured with a caliper "TotalLength" is the total length (mm) measured with a caliper "Mass" is the mass (g) obtained with a scale "surface type" identifies the substrate the animal was first spotted on "Sex" identifies the sex M or F or hatchling "Devpt_stage" identifies whether it is an adule, a juvenile, or a hatchling --------------------------------------------------------------------------------------------- DATA DESCRIPTION FOR: [Dufour_chapter4_stable_isotopes] --------------------------------------------------------------------------------------------- 1. Title of Chapter: Home and hub: pet trade and traditional medicine impact reptile populations in source locations and destinations 2. Author Information #First author Pauline C. Dufour Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China pdufour@connect.hku.hk #Corresponding author Timothy C. Bonebrake Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China tbone@hku.hk #Co-authors Elliott F. Miot Center for Immunology & Infection Science Park, Hong Kong SAR, China elliott.miot@c2i.hk Tsz Chun So Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China u3547046@connect.hku.hk Shun Long Tang Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China tsl0736@connect.hku.hk Emily E. Jones Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China jonese@hku.hk Tsz Ching Kong Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China u3547452@connect.hku.hk Felix Landry Yuan Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China felixlandryyuan@gmail.com Yik-Hei Sung Science Unit Lingnan University, Hong Kong SAR, China heisyh@gmail.com Caroline Dingle Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China cdingle@hku.hk 3. Date of data collection: 2021-APR to 2021-JUN 4. Geographic location of data collection: Hong Kong 5. Funding sources: Ocean Park Conservation Foundation (2020/21) ------------ DATA ------------ Name: Dufour_chapter4_stable_isotopes.csv Description: Ratios of carbon (d13C) and nitrogen (d15N) in tissues (tail tip or shedded skin) for 88 samples of Tokay gecko individuals 1. Number of variables: 10 2. Number of cases/rows: 89 3. Missing data codes: NA 4. Variable List "IndID" is the sample ID corresponding to a unique individual "Population" corresponds to the site individual was collected from "Bred" corresponds to the breeding conditions: wild vs. captive or shop when unknown and breeding was only alledged "SampleType" is the part of the body used for the sample "Mass(mg)" is the mass of the sample in milligrams "d15N" is the nitrogen ratio "d13C" is the carbon ratio "percentN" stands for percentage of nitrogen in the sample "percentC" stands for percentage of carbon in the sample "CNratio" is the ratio between Carbon and Nitrogen for each sample --------------------------------------------------------------------------------------------- DATA DESCRIPTION FOR: [Dufour_chapter4_pricemarket] --------------------------------------------------------------------------------------------- 1. Title of Chapter: Home and hub: pet trade and traditional medicine impact reptile populations in source locations and destinations 2. Author Information #First author Pauline C. Dufour Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China pdufour@connect.hku.hk #Corresponding author Timothy C. Bonebrake Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China tbone@hku.hk #Co-authors Elliott F. Miot Center for Immunology & Infection Science Park, Hong Kong SAR, China elliott.miot@c2i.hk Tsz Chun So Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China u3547046@connect.hku.hk Shun Long Tang Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China tsl0736@connect.hku.hk Emily E. Jones Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China jonese@hku.hk Tsz Ching Kong Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China u3547452@connect.hku.hk Felix Landry Yuan Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China felixlandryyuan@gmail.com Yik-Hei Sung Science Unit Lingnan University, Hong Kong SAR, China heisyh@gmail.com Caroline Dingle Area of Ecology & Biodiversity, School of Biological Sciences The University of Hong Kong, Hong Kong SAR, China cdingle@hku.hk 3. Date of data collection: 2021-FEB to 2021-APR 4. Geographic location of data collection: Hong Kong 5. Funding sources: Ocean Park Conservation Foundation (2020/21) ------------ DATA ------------ Name: Dufour_chapter4_price_market.csv Description: Price and alledged origin of the dried Tokay geckos sold in Hong Kong in Traditional Chinese Medicine Shops, as advertised 1. Number of variables: 6 2. Number of cases/rows: 19 3. Missing data codes: NA 4. Variable List "ShopID" is the anonymised Traditional Chinese Medicine shop identifier "SupposedOrigin" identifies the advertised origin on the label or described by the TCM shopkeeper "Country" identifies the advertised country of origin "Morph" identifies the morph (i.e., Red-spotted vs. Black-spotted) of dried Tokay geckos sold "PriceHKD" corresponds to the price in HKD at the moment of survey "PriceUSD" corresponds to the price in USD, obtained from the rate HKD -> USD at that time